lowQualScore : 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444
lowQualScore : 222 1 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 777777 1 22222 22222 333 2 1 4444444444444 1 4444 333 222 1 333 33 111 2 2222 11 2 55555 1 2 11 333 1 22 222 1 222222 111 1 11 1111 2222 1 1 111 111 22222 1111 1111 1111 111 11111 1111111 11111 11111
lowQualScore : 111 7 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 333333 5 4 77777 66666 77 555 2 0 2 3 2 4 5 3333333333333 2 4 4 2 5 2222 55 2 2 4 2 555 000 2 3 2 3 5 555 2 00 2 2 2 4 4 2 55 2 3 3 2 666 0 2 2 2 777 66 3 999 2 3333 2 88 0 00000 3 3 66 2 4 3 4 4 2 3 5 2 66 0 3 66 2 88 555 5 77 000 1 0 2 3 2 888888 777 2 0 2 2 33 1 1 4444 2 1111 0 3 3 6 1 2 8 0 1 7 444 8 0 111 6 99 00000 1111 77 0000 1 1 22 88888 2222 5 66 777 66 666 4 4 55 4 55 4 2 7777 4 5 44 3 4 4 2 4 0 99 00000 1 55 55 55 4 4444444 22222 22222 5 77 77 1
lowQualScore : ... . ............................................................................................ ...... . . ..... ..... .. ... . . . . . . . ............. . . . . . .... .. . . . . ... ... . . . . . ... . .. . . . . . . .. . . . . ... . . . . ... .. . ... . .... . .. . ..... . . .. . . . . . . . . . .. . . .. . .. ... . .. ... . . . . . ...... ... . . . . .. . . .... . .... . . . . . . . . . . ... . . ... . .. ..... .... .. .... . . .. ..... .... . .. ... .. ... . . .. . .. . . .... . . .. . . . . . . .. ..... . .. .. .. . ....... ..... ..... . .. .. .
lowQualScore : 000 0 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 000000 5 0 00000 00000 00 000 5 0 5 0 5 0 5 0000000000000 5 0 0 5 0 5555 55 5 5 0 5 000 555 5 0 5 0 5 000 5 55 5 5 5 0 0 5 00 5 0 0 5 000 0 5 5 5 555 00 0 555 5 5555 5 00 0 00000 0 0 55 5 0 0 0 0 5 0 5 5 55 0 0 00 5 00 000 5 55 000 2 0 5 5 5 888888 555 5 0 0 5 88 2 2 8888 2 2222 0 2 2 0 2 5 0 8 8 0 000 0 8 777 7 22 00000 3333 99 1111 4 7 99 99999 1111 7 99 666 11 222 4 0 55 0 55 0 3 2222 8 3 77 0 0 0 4 0 9 55 00000 2 55 55 55 4 4444444 55555 55555 0 99 99 0
consensus : NNNNNNGACATTTCAAACTCTACATCAGAATCGAGTCACAGC-TTTA----CAAAC-----TCAACTTTT---AGCTT-------GGTAGGCAGC---CCAGAAGCTTCATCCTCGCCGAAACCTAA-GCT-CCAACATTGGNAATCATCCAAAACCAGCCAAANNCAAGGCGAGCNCTACGAATNTTGANCGTCAACTNCCAGAGTGTNCGCAGGAAAGGGAAGCTGCTGGAATATCGNCGTTNTAGNCGANACAGACAAGGCCAGACATCATNNTNGGNACNGAGACNTGGCTGTCAGACCCAGACATCGNATCTNCANANTTACTTCGACCCNCCCAGCTNGGNTTTGACGTCTNCCGTCGNGATNGGCCGAACGNNCCCCATGGCGGNGTNCTTNTNGCANCCAGGAGACGACNTCNAANTNNNAGACGTCGNNACACGCAAGCANNNTGAGCTNATCAGTGCCTNGTTCACCGTCAAAATAGGCAAGAAGAGAATNGCCNTCGCNNCNTNCTACNGNCCNCCCGACAAAGTTGACGAAGNTTACCTATNANNTGGTCAGNGNNGANTTCNTCAAGACTCTAAGGATAAACAGGCCAAGAAGGGCATCTTAATTATAGCTGGAGACTTCAACCTCCCTGACGTAGACTGGA-AAGACCAAACCATAACTGGAAA------CCA---ATACCCGTCTA-GAGTCAACCAATCATTCCTGGACATGGTATCA--GACAACAGTTTTGAACAAATCGTCAACTTCCCCACAAGAAAACAGAACACATTAGACATCGTCCTAACAACTCATCCCAGCTTCAAACAACGATGCAAGCCCATGCCTTCTATTGG--T-AACAGCGACCACGATATTGTCCTGTTCGATAC----TA-CAATCACTGCGACACGTCCAAAACCACCAAGAAGAAAGATTCTCCTGTGGAAGAAAGCAGACATCNAAGGCATCAGGGACGACTTATCCGACCTATCGAGTATAACCAACCTGAATGACCCCTCCATAGAAGACTCTTGGGCTAGACTGAAGTCAAAAATACAAACTACCATTGAAAAGCGAGTCCCTTCGAAAATGACA-ACATCTAGAAACACACACCCATGGATGAATACCGAGAT---CAAGA-GATTAATTCGTAGAAAGCAGCGAGCACATAAGAAAGCGAGGCATTCC---AA-TC--AGAAACGGGACCTTGACAGG-----TATAAGC--GCCTACAGAAAG--AAGTA---CAATACCAGATACGNAAGGCC--A--ACA----AGAAGTACT-TAGTGGACACG--GTGAGCCAT--GACTTCAA--AGA--CGA-CTCTAAGAAGTTCTGGGCCTTCGTCAAAA-GT--AAA-GGACA--GGA-AGCCACTGGTGT-T--GCGCCACTNAA-AAATAA-GG-ATGGTTACCTC-CAAAGCGACAAT--GAAGCT-----AGAGCTAACATTCTCAACGAGCAATT--T--GTC--TCTGCCTTCACC-CGTGAAA-------ACA-----CCACCTACATC-----CCAGACA-TGGGTCAGAGTGAAATACCATCAATGCCA--AACATTACAGTCGACTGGAAAGGGGTCCACAAATTGCTGATG--AATCTCAAGACCAAGAAAGCCACTGGCCCAGACGAGATTCCAGCCTTCAT
Reference ( gi|1 ) : ATCTCAGACATTTCACAATCAACA--AGAACC-AGT-ACAGCATCTGAACCCGACCATATGTCTACCTTTGACAGCTTTAATACTAGTA--CAGTTTTCCAGA--CTTCATC---ACCGAAACCTAGTACTACCAACATTAGAAATCATCCAAAACCAGCTAAATTCAAG---AGCCTTA-GAATCTTGAATATCAACTGCCAGAGTATTCGCAGGAAAGGGAAGCTGCTGGAA----GCCATTATAGACGACACAGAC----CCAGACATCATCATCGGCACTGAGACGTGGCT---AGACCCAGACATCAGATCTACAGAATTACT---ACCCCCCAAGCTGGAGTTTGACATCTTCCGTCGTGATCGACCAAACAGCCCCCATGGCGGCGTTCTTATCGCATCCAAGAAAC-ACCTCCAACTCGGAAACATCATTACAAGCAAACACAATGAGCTGATCAGTGCCTCGTTCACCG-CAAA-----CAAGAAGAAAATTGCCATTGCAGCCTTCTACAGACCACCCAACAAAGTTGACGAAGTTTACCTATCATCTG-TTAAAGAAGACTTCCTCA---CTCTAAGGA--AACAGGCCAAGAAGGGCATCTTAATTATAGCTGGAGACTTCAATCTCCCTGACATAGACTGGA-AAGACCAAACCATAACTGGAAA------CCA---ATACCCGTCTA-GAGTCAACCAGTCATTCCTGGACATGGTATCA--GACAACAGTTTTGAACAAATCGTCAACTTCCCCACAAGAAAACAGAACACATTAGACATCATCCTAACAACTCATCCCAGCTTCAAACAACGATGCAAGCCCATGCCTTCTATTGG--T-AACAGCGACCATGATATTGTCCTGTTCGATAC----TA-CAATCACTGCGACACGTCCAAAACCACCAAGAAGAAAAATTCTCCTGTGGAAGAAAGCAGACATCCAAGGCATCAGGGACGACTTATCCGACCTATCGAGTATAACCAACCTGAATGACCCCTCCATAGAAGACTCTTGGGCTAGACTAAAGTCAAAAATACAAACTACCATTGAAAAGCGAGTCCCTTCGAAAATGACA-ACATCTAGAAATACTCACCCATGGATGAATACCGAGAT---CAAGA-GATTAATTCGTAGAAAACAACGAGCACATAAGAAAGCGAGGCATTCC---AA-TC--AGAAACGGGACCTTGACAGG-----TATAAGC--GCCTACAGAAAG--AAGTA---CAATACCAGATACGAAAGGCC--A--ACA----AGAAGTACT-TAGTGGACACG--GTGAGTCAG--GACTTCAA--AGA--CGA-CTCTAAGAAGTTCTGGGCCTTCGTCAAAA-GT--AAA-GGACA--GGA-AGCCACTGGTGT-T--GCGCCACTAAA-AAACAA-GG-ATGGTTACCTC-CAAAGCAACAAT--GAAGCT-----AGAGCTAACATTCTCAACGAGCAATT--T--GTC--TCTGCCTTCACC-CGTGAAA-------ACA-----CCACCTACATC-----CCAGACA-TGGGTCAGAGTGAAATACCATCAATGTCA--AACATTACAGTCGACTGGAAAGGGGTCCACAAATTGCTGATG--AATCTCAAGACCAAGAAAGCCACTGGCCCAGACGAGATTCCAGCCTTCAT
gi|3 : GACATTTCAAACTCTACATCAGAATCGAGTCACAGC-TTTA----CAAAC-----TCAACTTTT---AGCTT-------GGTAGGCAGC---CCAGAAGCTTCATCCTCGCCGAAACCTAA-GCT-CCAAT-TTGGTA-----CCAAA-----CCAAAGACAAGGCGAGCACTACGAATATTGACCGTTAACTTCCAGAGTGTACGCAAGAA-GGGAAG------GAATATCGATGTTTTAGTTGAAACA-ACAAGGCCAGACATCATACTAGGAACAGAAACCTGGCTGTCAGAT---GACATCGCATCTCCATACTT-CTTCGATCCGTC--GCTTGGTTTTAAAGTTTACCGTCGAGATAGGCCGAATGTACCCCATGGCGGAGTGCTTCTAGCAGT-AAAAGACGATATTAAAGTGTTAGATGTTGGGACACACAAGCAACTTGAACTTATC----TCTGGT--ACCATCAAAATAGGCAAGAAGAGAATGGTCCTCACTTCATACTACCGTCCTCCAGATAAAGTTGATGAAAGTTATCT-TGAAATGGTCAGCGCCGAATTCA-CAAGACTC-AAGAATAAATA---CAAGAAGGCTATATTCATCATTGGAGGAGACTTCAACATTCCAGACGTTGATTGGACAAGA---AAC-ACAATTTCAAAGGCACCTCATATATACCC-TCAACGTGTGAGCCAGGCATTCCTTGATAT--TGTCATGGATATGAGCCTTGAACAACTAGTAGATTTCCCAACTAGACTACAGAACACGCTTGATCTTGTTTTCACAAGCCACCCAAGTTTCAAGATACGATGCAAACCATTACCACCAATAGGACTAAAGAGTGACCATGTCATTGTTCTCCTAGACACAGCTCATCAACCCCAACGAC---TCC--GACTTCCTCGTAGAAAGATATATTTATGGAAGAAGGCCAACATAGATGGCATCA
gi|2 : tacccctACATTAGAAATCATCCAAAACCAGCTAAATTCAAG---AGCCTTA-GAATCTTGAATATCAACTGCCAGAGTATTCGCAGGAAAGGGAAGCTGCTGGAA----GCCATTATAGACGACACAGAC----CCAGACATCATCATCGGCACTGAGACGTGGCT---AGACCCAGACATCAGATCTACAGAATTACT---ACCCCCCCAGCTGGAGTTTGACATCTTCCGTCGTGATCGACCAAACAGCCCCCATGGCGGCGTTCTTATCGCATCCAGGAAAC-ACCTCCAACTCGGAAACATCATTACAAGCAAACACAATGAGCTGATCAGTGCCTCGTTCACCG-CAAA-----CAAGAAGAAAATTGCCATTGCAGCCTTCTACAGACCACCCAACAAAGTTGACGAAGTTTACCTATCATCTG-TTAAAGAAGACTTCCTCA---CTCTAAGGA--AACAGGCCAAGAAGGGCATCTTAATTATAGCTGGAGACTTCAATCTCCCTGACATAGACTGGA-AAGACCAAACCATAACTGGAAA------CCA---ATACCCGTCTA-GAGTCAACCAATCATTCCTGGACATGGTATCA--GACAACAGTTTTGAACAAATCGTCAACTTCCCCACAAGAAAACAGAACACATTAGACATCATCCTAACAACTCATCCCAGCTTCAAACAACGATGCAAGCCCATGCCTTCTATTGG--T-AACAGCGACCACGATATTGTCCTGTTCGATAC----TA-CAATCACTGCGACACGTCCAAAACCACCAAGAAGAAAGATTCTCCTGTGGAAGAAAGCAGACATCAAAGGCATCAGGGACGACTTATCCGACCTATCGAGTATAACCAACCTGAATGACCCCTCCATAGAAGACTCTTGGGCTAGACTAAAGTCAAAAATACAAACTACCATTGAAAAGCGAGTCCCTTCGAAAATGACA-ACATCTAGAAATACACACCCATGGATGAATACCGAGAT---CAAGA-GATTAATTCGTAGAAAACAACGAGCATATAAGAAAGCGAGGCATTCC---AA-TC--AGAAACGGGACCTTGACAGG-----TATAAGC--GCCTACAGAAAG--AAGTA---CAATACCAGATACGAAAGGCC--A--ACA----AGAAGTACT-TAGTGGACACG--GTGAGTCAC--GACTTCAA--AGA--CGA-CTCTAAGAAGTTCTGGACCTTCGTCAAAA-GT--AAA-GGACA--GGA-AGCCACTGGTGT-T--GCGCCACTAAA-AAACAA-GG-ATGGTTACCTC-CAAAGCAACAAT--GAAGCT-----AGAGCTAACATTCTCAACGAGCAATT--T--GTC--TCTGCCTTCACC-CGTGAAA-------ACA-----CCACCTACATC-----CCAGACA-TGGGTCAGAGTGAAATACCATCAATGTCA--AACATTACAGTCGACTGGAAAGGGGTCCACAAATTGCTGATG--AATCTCAAGACCAAGAAAGCCACTGGCCCAGACGAGATTCCAGCCTTCATaacatcatatgacgcagtacagtcagacgtttaccgacacaaccttccagtctattgaatatatgtggacatcattcaaggcagtcatcgcatcatctttagaacagtatatccctactaaaatgtcctgcactcgacagacacacccttgggtcaccaccaagctgcgtaggatgatgagaaggaagcagagagcccactggagggccaggaagtctgggaactctaagacatgggaaagatacaagatattacaaacagcagtccagaaagagaccaggacagctgagaagtcctacattcaagacgtcgttagcgatgatctgaggaagagccccaagcgtttctggtcatatataaagagtaagaggcaagagacagaaggtgtatctcccctcatcaataaggacagattccttcagagtgaaagctcaagaaaagcggacatcttcaatgaccaattccagtcagtctataccaaagaagacactacaagtattccagacaagg
gi|4 : CAAGAAGGGCATCTTAATTATAGCTGGAGACTTCAATCTCCCTGACATAGACTGGA-AAGACCAAACCATAACTGGAAA------CCA---ATACCCGTTTA-GAGTCAACCAATCATTCCTGGACATGGTAGCA--GATAACAGTTTTGAACAAATCGTCAACTTCCCCACAAGAAAACAGAACACATTAGACATCATCCTAACTACTCATCCCAGCTTCAATCAACGATGCAAACCCATGCCTTCTATTGG--T-AACAGCGACCACGATATTGTCCTGTTCGATAC----TA-CAATCACTGCGACACGTCCAAAACCACCAAGAAGAAAGATTCTCCTGTGGAAGAAAGCAGACATCCAAGGCATCAGGGACGACTTATCCGACCTATCGGGTATAACCAACCTGAATGACCCCTCAATAGAAGACTCTTGGGCTACACTAAAGTCAAAAATACAAACTACCATTGAAAAGCGAGTCCCTTCGAAAATGACA-ACATCTAGAAATACACACCCATGGATGAATACTGAGAT---CAAGA-GACTAATTCGTAGAAAACAACGAGCACATAAGAAAGCGAGGCATTCC---AA-TC--AGAAACGGGACCTTGACAG
gi|9 : CATCTTAATAATAGCTGGAGACTTCAACCTCCCTGACGAAGACTGGA-AAAACCTAACCATAACTGGAAA------CCA---ATACCTGTTTA-GAGTCAACCAATAATTCCTGGACATGGTATCA--GACAACAGTTTTAAACAAATCGTCAACTTCCCCACAAGAAAACAGAACACATTAGACATCATCCTAACAACTCATCCCAGCTACAAACAACGATGCAAGCCCATACCCTCTATTGG--T-AACAGCGACCACGATATTGTCCTGTTCGATAC----TA-AGATCACTGCGACACGTCCAAAACCACCAAGAAGAAAGATTCTCTTATGGAAGAATGCAGACATCCAAGGCATCAGGGGCTACTTATCTGACCAATCAAGTATAATCAAACTGAATAATCCTTCCATAGaagtacttagtggacacggtgagtcatgacttcaaagacgactctaagaagttctgggccttcgtcaaaaagtaaaggacaggaagccactggtgttgcgccactaaaaaataaggatggttacctccaaagcaacaacgaagctagagctaacattctcaacgagcaatttgtctctgccttcacccgtgaaaacaccacctacatcccagacatgggtcagagtgaaataccatcaatgtcaaacattacagtcgactggaaaggggtccacaaattgctgatgaatctcaagaccaagaaagccactggcccagacgagattccagccttcatc
gi|5 : GATCCCTCCATAGAAGACTCTTGGGCTAGATTGAAGTCAAAAATACAAACTGCCATTGAAAAGCGAGTCCCTTCGAAAATGACA-ACATCTAGAAACACAAACCCATGGATGAATGCTGAGAT---CAAGA-GATTGATTCTTAGAAAGCAGCGAGCACATAAGAAAGCGAGGCATTCC---AA-TC--AGAAACAGGACCTTGACAGG-----TATAAGC--CTCTACAGAAAG--AGGTA---CAATACTAGATACGTAAGGCC--A--ACA----AGAAGTACT-TAGTGGACACG--GTGAGTCAT--GACTCCAA--AGA--CGA-CTCTAAGAAGTTCTGGGCCTTCATCAAAA-GC--AAA-GGACA--GGA-AGCCACTGGTGT-T--GCACAACTGAA-AAATAA-GG-ATGGTTACCTC-CAAAGCGACAAT--GAAGCT-----CTAGCTAACATTCTCGATGAGCAATT--T--GTC--TCCGCCTTCACC-AGTGAAA-------ACACCAGTCCACCTATACT-----CCAGACA-TGGGTCAGAGTGAAATACCCTCAATGCCA--AACATTGCAGTCGACTAGAAAGGGGTCCACAAATTGCTGATG--AATCTCAAGACAAAGAAAGCAGCTGGCCCAAACGAGATTCCAGCCTTTA
gi|6 : ACTCTTGGGCTAGATTGAAGTTATAAATACAAACTACCATTGAAAAGTGAGTCCCTTCAAAAATGACA-ACATCTAGAAACACAAACCCATGGATGAATACTGAGAT---CAAGA-GGTTGATTCATAGAAAGCAGCGAGCACATAAGAAAGTGAGGCATTCC---AA-TC--AGAAATGGGACCTTGACAGGACTGGTATAAGC--ATCTACAGAAAG--AAGTA---CAATACCAGATACGTAAGTCC--A--ACA----AGAAGTACT-TAGTAGACACG--GTGAGCCAT--GACTTCAA--AGA--CGA-CTCTAAGAAGTTCTAGGCCTTCGTCAAAA-GC--AAA-GGACA--GGA-AGCCACTGGTGT-T--GCACCACTGAA-AAATAA-GG-ATGGTTACCTC-CAAAGCGACAAT--GAAGCT-----AGAGCTAACATTCTCAATGAGCAATT--T--GTC--TATACCTTCACC-CGTGAAA-------ACA-----CCAACTACATT-----CCAAACA-TGGGTCAGAGTGAAATACTCTCAGTGCCA--AACATTGCAGTTGACTGGAAAGGGGTCCACAAATTGCTGATGAAAATCTCAAGGCGAAGAAAGCCA--------------ATTCCAGCCTTCAT
gi|3 : TCCCTACTAAAATGTCCTGCA-CTCGACAGACACACCCTTGGGTCACCACCAAGCTGCGTAGGATGATGA----GAAGGAAGCAGAGAGCCCACTGGAGGGCCAGGAAGTCTGGGAACTCTAAGACATGGGA-----A-AGA-----TACAAGA--TATTACAAACAG--CAGT---------CCAGA---AAGAGACC--AGGACAGCTGAGAAGTCCTACATTCAAGACGTCGTTAGCGAT--GATCT-GA--GGA--AGAGCCCCAAGCGTTTCTGGTCATATATAAAGA-GT--AAG-AGGCA--AGA-GACAGAAGGTGT-A--TCTCCCCTCAT-CAATAA-GG-ACAGATTCCTT-CAGAGTGA-------AAGCTCAAGAAAAGCGGACATCTTCAATGACCAATT--C--CAG--TCAGTCTATACC-AAAGAAG-------ACA-----CTACAAGTATT-----CCAGACA-AGGc
gi|8 : tacccctgacatttcaaactctacatcagaatcgagtcacagctttacaaactcaacttttagcttggtaggcagcccagaagcttcatcctcgccgaaacctaagctccaatttggtaccaaaccaaagacaaggcgagcactacgaatattgaccgttaacttccagagtgtacgcaagaagggaaggaatatcgatgttttagttgaaacaacaaggccagacatcatactaggaacagaaacctggctgtcagatgacatcgcatctccatacttcttcgatccgtcgcttggttttaaagtttaccgtcgagataggccgaatgtaccccatggcggagtgcttctagcagtaaaagacgatattaaagtgttagatgttgggacacacaagcaacttgaacttatctctggtaccatcaaaataggcaagaagagaatggtcctcacttcatactaccgtcctccagataaagttgatgaaagttatcttgaaatggtcagcgccgaattcacaagactcaagaataaatacaagaaggctatattcatcattggaggagacttcaacattccagacgttgattggacaagaaacacaatttcaaaggcacctcatatataccctcaacgtgtgagccaggcattccttgatattgtcatggatatgagccttgaacaactagtagatttcccaactagactacagaacacgcttgatcttgttttcacaagccacccaagtttcaagatacgatgcaaaccattaccaccaataggactaaagagtgaccatgtcattgttctcctagacacagctcatcaaccccaacgactccgacttcctcgtagaaagatatatttatggaagaaggccaacatagatggcatcaaacatcatatgacgcagtacagtcagacgtttaccgacacaaccttccagtctattgaatatatgtggacatcattcaaggcagtcatcgcatcatctttagaacagtataCC---AA-TC--AGAAACGGGACCTTGACAGG-----TATAAGC--GCCTACAGAAAG--AAGTA---CATTACCAGATACGAAAGGCC--A--ACA----AGAAGTACT-TAGTGGACACG--GTGAGTCAT--GACTTCAA--AGA--TGA-CTCTAAGAAGTTCTGGGCCTTCGTCAAAA-GT--AAA-GGACA--GGA-AGCCACTGGTGT-T--GCGCCACTAAA-AAACAA-GG-ATGGTTACCTC-CAAAGCAACAAT--GAAGCT-----AGAGCTAACATTCTCAACGAGCAATT--T--GTC--TCTGCCTTCACC-CGTGAAA-------ACA-----CCACCTACATC-----CCAGACA-TGGGTCAGAGTGAAATACCATCAATGTCA--AACATTACAGTCGACTGGAAAGGGGTCCACAAATTGCTGATG--AATCTCAAGACCAAGAAAGCCACTGGCCCAGACGAGATTCCAGCCTTCA
gi|10 : ATAAACAGGACTGCAGAAAG--AAGTG---CAACACCAAATATGGAAGGTC--A--ACA----AGAAATACC-TTGGGGACACA--GTGAGCCAA--AACTTCAA--GGA--CAA-CTCC-ATAAGTTTTGGGATTTCATCAGAA-TC--AAA-TGACC--GGA-AGATACTGGTAT-T--GCA---------------------GGTTTGCTT-CAGAGCGATAAT--GCAGCC-----AGAACAAACAATCTAAACGTGCAATT--T--GTA--TCTGCATTTACC-CATGAGA-------A-----------------T-----TCAGACA-TGGGACAGAGCGACCTATCACCAATACCA--AGCATTAGTGTTGACTGGTAGGGTGTACACAAGTTGCTGCTG--AGTCTCAATACTGAAAATGCCACTACCCAAGATTAGATTTTAGCC
gi|4 : AGC--ACATA-AGAAAGCGAGGCATTCCAAT--CAGAAACGG--GACCTTG--ACA-----GAAGTACT-TAGTGGACACG--GTGAGTCAT--GACTTCAA--AGA--CGA-CTCTAAGAAGTTCTGGGCCTTCGTCAAAAAGT--AAA-GGACA--GGA-AGCCACTGGTGT-T--GCGCCACTAAA-AAATAA-GG-ATGGTTACCTC-CAAAGCAACAAC--GAAGCT-----AGAGCTAACATTCTCAACGAGCAATT--T--GTC--TCTGCCTTCACC-CGTGAAA-------ACA-----CCACCTACATC-----CCAGACA-TGGGTCAGAGTGAAATACCATCAATGTCA--AACATTACAGTCGACTGGAAAGGGGTCCACAAATTGCTGATG--AATCTCAAGACCAAGAAAGCCACTGGCCCAGACGAGATTCCAGCCTTCAT
gi|13 : caagaagggcatcttaattatagctggagacttcaatctccctgacatagactggaaagaccaaaccataactggaaaccaatacccgtttagagtcaaccaatcattcctggacatggtagcagataacagttttgaacaaatcgtcaacttccccacaagaaaacagaacacattagacatcatcctaactactcatcccagcttcaatcaacgatgcaaacccatgccttctattggtaacagcgaccacgatattgtcctgttcgatactacaatcactgcgacacgtccaaaaccaccaagaagaaagattctcctgtggaagaaagcagacatccaaggcatcagggacgacttatccgacctatcgggtataaccaacctgaatgacccctcaatagaagactcttgggctacactaaagtcaaaaatacaaactaccattgaaaagcgagtcccttcgaaaatgacaacatctagaaatacacacccatggatgaatactgagatcaagagactaattcgtagaaaacaacgACACG--ATGG--CAGACGA--TCAG--AGAAGCAA-CCCTAAACGGTTCTACAGCTTCATCAA---GTCCAAACGGA-A--GGG-TGCTTCTGGTGT-A--GTTCCTCTTAT-AAATAATGG-A-----ACATCACATAATGACAGTTTGAAG-------AAAGCTAACATCCTCAACGATCAGTTAAC--ATC---CTGTTTTTACTACG-GAAA-------Ac
gi|11 : cttatgtaggcaACTTGAAGCAGA----A-CTCCAAACGCTTCTATGCTTACGTGAAAA-GC--AAA-CGCCA--AGA-ATCTGAGGGGGTATCAGCTCTACTCAA----CAA-GG-AAGGCTTCCTA-CAGAGCAATAGC--AAACAG-----AAAGCAAATATCCTCAACGACCAGTT--TCAGTCAGTCTACa
gi|12 : cccatttgagagccaagaagtctggtagacagagggactgggacaaatataacgaacttcaagttgaggtccaaaaagacactagatcaactgaacgtgacgtggtatgcacatAAAATGTTTTGGAACTACATTAAA---T--CAA-GGAGAAGGGATAGC-ATGGGTGT-C--GCCTCACTGAATAAAGAA-AGCATTGCAATCTG-CGATGCC-CAATT-GAA----------AGCAAACATACTCAACGACCAATT--T--TTC--GCAGTATTCACT-AATGAAGATTTGTCACA-----CCGACCATATCTCCCTCCAAGCACCACGTC---------TTCCATCAATCCCATCACCGTGACAGTC------AAAGGTGTGCAAAAACTGCTCCAG--AACTTCAAac
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|7 ): ATATTTATGGAAGAAGGCCAACATAGATGGCATCAAGCATCATATGACGCAGTACAGTCAGACGTTTACCGACACAACCTTCCAGTCTATTGAATGTATGTGGGCATCATTCAAGGCAGCCATCGCATCTTCTTTAGAACAGTATATCCCTACTAAAATGTCCTGCACTCGACAGACACACCCTTGGGTCACCACCAAGCTGCGTAGGATGATGAGAAGGAAGCAGAGAGCCCACTGGCGGGCCAGGAAGTCTGGGAACTCTAAGACATGGGAAAGATACAAGATATTACAAACAGCAGTCCAGAAAGAGACCAGAACAGCTGAGAAGTCCTACATTCAAGACGTCGTTAGCGATGATCTGAGGAAGAGCCCCAAGCGTTTCTGGTCATATATAAAGAGTAAGAGGCAAGAGACAGAAGGTGTATCTCCCCTCATCAATAAGGACGGATTCCTTCAGAGTGAAAGCTCAAGAAAAGCGGACATCCTCAATGACCAATTCCAGTCAGTCTATACCAAAGAAGACACTACAAGT
Unaligned ( gi|14 ): GACATCCTCAATGACCAATTCCAGTCAGTCTATATCAAAGAAGACACTATAAGTATTCCAGACAAGGGACCAAGCCCTCACCCAACTATGATGGGACTCAAGATCCGCCCCACCGGAGTCGCAAAGCTTCTTGGTAACCTTAAACCA
Unaligned ( gi|15 ): ATAGTCACTAATGAGTGAGATTCTGTCACACTGACCATCTCTCTCTCTTAGCACCAAGCCCTCCGTGAACCCCATCACCGGGACAGTCAAGGGAGTGCAGAACTTCTCCACAACCTG
Unaligned ( gi|16 ): ACTGATCACATACTCTCCCTCCAAACATAATGCTCTCCATAAACCCCATCACCACGAGAGTCAAAAGAGTGCAGAAACTACTCCAGAACCT
Unaligned ( gi|17 ): CCTCACCCAACTATGATGGGACTCAAGATCCGCCCCAACGGAGTCGCAAAGCTTCTTGGTAACCTTAAACCA
Unaligned ( gi|18 ): ATGATCAGAGAAGCAACACCAAAAGGATCATCAAATCCAAACAGCTTTTGGTGTAGCTCCTCTAACAAACA
Alignments
lowQualScore : 11 1 1 2 66666666666666 333 6666666 11 333 11 222 2 2 333 2 4444 4444 333 333 1 2 2 55555 2 333 33 222222 111 11 11 1111 1 222 1 111 1 11 11111 11 11111 1111111 11111 11111
lowQualScore : 3 2 4 88 5 5 0 55555555555555 4 555 5555555 77 555 88 000 0 0 7 0 1 7 7 0 22 666 11 3 1 222 1 0 1 7 6 4444 1 0 1 1 1 6 4444 22 1 1 1 1 777 6 11 1 1 1 7 777 1 5 1 11 0 1 1 1 0 0 222 1 1 1 1 1 6 0 0 3 1 1 1 333 0 0 222 6 0 333 1 7 1 7 3 11111 0 1 1 0 22 1 1 1 1 1 0 1 7 1 22 3 0 11 22 1 88 777 7 00 6 8 0 333333 444 8 11 2 11 8 7777 8 0 0 1 1 5 4 000 1 5 777 0 33 2 2 44444 9999 66 8888 2 33 66 66 4 9999 8 00 55 55 0 55 555 7 3 44 3 44 3 2 6666 4 2 44 3 3 1 3 1 77 66666 1 0 44 44 44 3 0 1111111 00000 11111 4 66 66
lowQualScore : . . . .. . . . .............. . ... ....... .. ... .. ... . . . . . . . . .. ... .. . . ... . . . . . .... . . . . . . .... .. . . . . ... . .. . . . . ... . . . .. . . . . . . ... . . . . . . . . . . . . ... . . ... . . ... . . . . . ..... . . . . .. . . . . . . . . . .. . . .. .. . .. ... . .. . . . ...... ... . .. . .. . .... . . . . . . . ... . . ... . .. . . ..... .... .. .... . .. .. .. . .... . .. .. .. . .. ... . . .. . .. . . .... . . .. . . . . . .. ..... . . .. .. .. . . ....... ..... ..... . .. ..
lowQualScore : 0 5 0 00 0 0 0 00000000000000 0 000 0000000 55 000 00 555 0 0 3 7 0 3 3 7 00 777 77 3 0 333 0 7 0 3 7 3333 0 7 0 0 0 7 0000 00 0 0 0 0 000 7 77 0 0 0 3 000 0 0 0 77 7 0 0 0 7 7 777 0 0 0 0 0 7 7 7 3 0 0 0 000 7 7 777 7 7 000 0 3 0 3 7 00000 7 0 0 7 00 0 0 0 0 0 7 0 3 0 00 3 7 77 00 0 33 333 3 77 7 0 8 000000 000 0 00 8 00 0 0000 0 8 8 0 4 0 0 000 4 0 555 0 88 5 5 33333 9999 11 6666 0 33 11 11 4 4444 9 00 00 55 5 00 555 3 3 66 3 66 3 3 7777 4 2 44 3 3 8 3 0 99 77777 5 4 66 66 66 6 2 8888888 00000 11111 4 99 99
consensus : NNNNNNGACATTTCANANTCNACATCAGAACCGAGTCACAGCATCTGAACCCGANCATATGTCNACCTTTGACAGCTTTAATACTGGTAGGCAGCTTTCCAGAAGCTTCATCCTCGCCGAAACCTAGTGCTACCAACATTAGAAATCATCCAAAACCAGCTAAATTCAAG---AGCCTTA-GAATCTTGAATATCAACTGCCAGAGTATTCGCAGGAAAGGGAAGCTGCTGGAA----GCCGTTATAGACGACACAGAC----CCAGACATCATCATCGGCACTGAGACGTGGCT---AGACCCAGACATCGGATCTACAGAATTACT---ACCCCCC-AGCTGGAGTTTGACGTCTTCCGTCGTGATCGACCGAACGGCCCCCATGGCGGCGTTCTTATCGCATCCAAGAAAC-ACCTCCAACTCGGAAACGTCGTTACAAGCAAACACAATGAGCTGATCAGTGCCTCGTTCACCG-CAAA-----CAAGAAGAAAATTGCCATCGCAGCCTTCTACAGACCACCCGACAAAGTTGACGAAGTTTACCTATCATCTG-TTAAAGAAGACTTCCTCA---CTCTAAGGA--AACAGGCCAAGAAGGGCATCTTAATTATAGCTGGAGACTTCAATCTCCCTGACGTAGACTGGA-AAGACCAAACCATAACTGGAAA------CCA---ATACCCGTCTA-GAGTCAACCAATCATTCCTGGACATGGTATCA--GACAACAGTTTTGAACAAATCGTCAACTTCCCCACAAGAAAACAGAACACATTAGACATCATCCTAACAACTCATCCCAGCTTCAAACAACGATGCAAGCCCATGCCTTCTATTGG--T-AACAGCGACCACGATATTGTCCTGTTCGATAC----TA-CAATCACTGCGACACGTCCAAAACCACCAAGAAGAAAGATTCTCCTGTGGAAGAAAGCAGACATCCAAGGCATCAGGGACGACTTATCCGACCTATCGAGTATAACCAACCTGAATGACCCCTCCATAGAAGACTCTTGGGCTAGACTAAAGTCAAAAATACAAACTACCATTGAAAAGCGAGTCCCTTCGAAAATGACA-ACATCTAGAAANACACACCCATGGATGAATACCGAGAT---CAAGA-GATTAATTCGTAGAAAGCAGCGAGCACATAAGAAAGCGAGGCATTCC---AA-TC--AGAAACGGGACCTTGACAGG-----TATAAGC--GCCTACAGAAAG--AAGTA---CAATACCAGATACGAAAGGCC--A--AC-A----AGAAGTACT-TAGTGGACACG--GTG--AGC-CATGACTTCAA--AGA--CGA-CTCTAAGAAGTTCTGGGCCTTCGTCAAAA-GT--AAA-GGACA--GGA-AGCCGCTGGTGT-T--GCGCCACTNAA-AAATAA-GG-ATGGTTACCTC-CAAAGCGACAAT--GAAGCT-----AGAGCTAACATTCTCAACGAGCAATT--T--GTC--TCTGCCTTCACC-CGTGAAA-------ACA-----CCACCTACATC-----CCAGACA-TGGGTCAGAGTGAAATACCATCAATGCCA--AACATTACAGTCGACTGGAAAGGGGTCCACAAATTGCTGATG--AATCTCAAGACCAAGAAAGCCACTGGCCCAGACGAGATTCCAGCCTTCAT
Reference ( family-1 ) : NNNNNNGACATTTCAAACTCTACATCAGAATCGAGTCACAGC-TTTA----CAAAC-----TCAACTTTT---AGCTT-------GGTAGGCAGC---CCAGAAGCTTCATCCTCGCCGAAACCTAA-GCT-CCAACATTGGNAATCATCCAAAACCAGCCAAANNCAAGGCGAGCNCTACGAATNTTGANCGTCAACTNCCAGAGTGTNCGCAGGAAAGGGAAGCTGCTGGAATATCGNCGTTNTAGNCGANACAGACAAGGCCAGACATCATNNTNGGNACNGAGACNTGGCTGTCAGACCCAGACATCGNATCTNCANANTTACTTCGACCCNCCCAGCTNGGNTTTGACGTCTNCCGTCGNGATNGGCCGAACGNNCCCCATGGCGGNGTNCTTNTNGCANCCAGGAGACGACNTCNAANTNNNAGACGTCGNNACACGCAAGCANNNTGAGCTNATCAGTGCCTNGTTCACCGTCAAAATAGGCAAGAAGAGAATNGCCNTCGCNNCNTNCTACNGNCCNCCCGACAAAGTTGACGAAGNTTACCTATNANNTGGTCAGNGNNGANTTCNTCAAGACTCTAAGGATAAACAGGCCAAGAAGGGCATCTTAATTATAGCTGGAGACTTCAACCTCCCTGACGTAGACTGGA-AAGACCAAACCATAACTGGAAA------CCA---ATACCCGTCTA-GAGTCAACCAATCATTCCTGGACATGGTATCA--GACAACAGTTTTGAACAAATCGTCAACTTCCCCACAAGAAAACAGAACACATTAGACATCGTCCTAACAACTCATCCCAGCTTCAAACAACGATGCAAGCCCATGCCTTCTATTGG--T-AACAGCGACCACGATATTGTCCTGTTCGATAC----TA-CAATCACTGCGACACGTCCAAAACCACCAAGAAGAAAGATTCTCCTGTGGAAGAAAGCAGACATCNAAGGCATCAGGGACGACTTATCCGACCTATCGAGTATAACCAACCTGAATGACCCCTCCATAGAAGACTCTTGGGCTAGACTGAAGTCAAAAATACAAACTACCATTGAAAAGCGAGTCCCTTCGAAAATGACA-ACATCTAGAAACACACACCCATGGATGAATACCGAGAT---CAAGA-GATTAATTCGTAGAAAGCAGCGAGCACATAAGAAAGCGAGGCATTCC---AA-TC--AGAAACGGGACCTTGACAGG-----TATAAGC--GCCTACAGAAAG--AAGTA---CAATACCAGATACGNAAGGCC--A--AC-A----AGAAGTACT-TAGTGGACACG--GTG--AGC-CATGACTTCAA--AGA--CGA-CTCTAAGAAGTTCTGGGCCTTCGTCAAAA-GT--AAA-GGACA--GGA-AGCCACTGGTGT-T--GCGCCACTNAA-AAATAA-GG-ATGGTTACCTC-CAAAGCGACAAT--GAAGCT-----AGAGCTAACATTCTCAACGAGCAATT--T--GTC--TCTGCCTTCACC-CGTGAAA-------ACA-----CCACCTACATC-----CCAGACA-TGGGTCAGAGTGAAATACCATCAATGCCA--AACATTACAGTCGACTGGAAAGGGGTCCACAAATTGCTGATG--AATCTCAAGACCAAGAAAGCCACTGGCCCAGACGAGATTCCAGCCTTCAT
gi|1 : GACATTTCACAATCAACA--AGAACC-AGT-ACAGCATCTGAACCCGACCATATGTCTACCTTTGACAGCTTTAATACTAGTA--CAGTTTTCCAGA--CTTCATC---ACCGAAACCTAGTACTACCAACATTAGAAATCATCCAAAACCAGCTAAATTCAAG---AGCCTTA-GAATCTTGAATATCAACTGCCAGAGTATTCGCAGGAAAGGGAAGCTGCTGGAA----GCCATTATAGACGACACAGAC----CCAGACATCATCATCGGCACTGAGACGTGGCT---AGACCCAGACATCAGATCTACAGAATTACT---ACCCCCCAAGCTGGAGTTTGACATCTTCCGTCGTGATCGACCAAACAGCCCCCATGGCGGCGTTCTTATCGCATCCAAGAAAC-ACCTCCAACTCGGAAACATCATTACAAGCAAACACAATGAGCTGATCAGTGCCTCGTTCACCG-CAAA-----CAAGAAGAAAATTGCCATTGCAGCCTTCTACAGACCACCCAACAAAGTTGACGAAGTTTACCTATCATCTG-TTAAAGAAGACTTCCTCA---CTCTAAGGA--AACAGGCCAAGAAGGGCATCTTAATTATAGCTGGAGACTTCAATCTCCCTGACATAGACTGGA-AAGACCAAACCATAACTGGAAA------CCA---ATACCCGTCTA-GAGTCAACCAGTCATTCCTGGACATGGTATCA--GACAACAGTTTTGAACAAATCGTCAACTTCCCCACAAGAAAACAGAACACATTAGACATCATCCTAACAACTCATCCCAGCTTCAAACAACGATGCAAGCCCATGCCTTCTATTGG--T-AACAGCGACCATGATATTGTCCTGTTCGATAC----TA-CAATCACTGCGACACGTCCAAAACCACCAAGAAGAAAAATTCTCCTGTGGAAGAAAGCAGACATCCAAGGCATCAGGGACGACTTATCCGACCTATCGAGTATAACCAACCTGAATGACCCCTCCATAGAAGACTCTTGGGCTAGACTAAAGTCAAAAATACAAACTACCATTGAAAAGCGAGTCCCTTCGAAAATGACA-ACATCTAGAAATACTCACCCATGGATGAATACCGAGAT---CAAGA-GATTAATTCGTAGAAAACAACGAGCACATAAGAAAGCGAGGCATTCC---AA-TC--AGAAACGGGACCTTGACAGG-----TATAAGC--GCCTACAGAAAG--AAGTA---CAATACCAGATACGAAAGGCC--A--AC-A----AGAAGTACT-TAGTGGACACG--GTG--AGT-CAGGACTTCAA--AGA--CGA-CTCTAAGAAGTTCTGGGCCTTCGTCAAAA-GT--AAA-GGACA--GGA-AGCCACTGGTGT-T--GCGCCACTAAA-AAACAA-GG-ATGGTTACCTC-CAAAGCAACAAT--GAAGCT-----AGAGCTAACATTCTCAACGAGCAATT--T--GTC--TCTGCCTTCACC-CGTGAAA-------ACA-----CCACCTACATC-----CCAGACA-TGGGTCAGAGTGAAATACCATCAATGTCA--AACATTACAGTCGACTGGAAAGGGGTCCACAAATTGCTGATG--AATCTCAAGACCAAGAAAGCCACTGGCCCAGACGAGATTCCAGCCTTCAT
gi|10 : atctcaATAAACAGGACTGCAGAAAG--AAGTG---CAACACCAAATATGGAAGGTC--A--AC-A----AGAAATACC-TTGGGGACACA--GTG--AGC-CAAAACTTCAA--GGA--CAA-CTCC-ATAAGTTTTGGGATTTCATCAGAA-TC--AAA-TGACC--GGA-AGATACTGGTAT-T--GCA---------------------GGTTTGCTT-CAGAGCGATAAT--GCAGCC-----AGAACAAACAATCTAAACGTGCAATT--T--GTA--TCTGCATTTACC-CATGAGA-------A-----------------T-----TCAGACA-TGGGACAGAGCGACCTATCACCAATACCA--AGCATTAGTGTTGACTGGTAGGGTGTACACAAGTTGCTGCTG--AGTCTCAATACTGAAAATGCCACTACCCAAGATTAGATTTTAGCC
gi|11 : GACGTG--GTA--TGCACAT-ACTTGAAGCAGA----A-CTCCAAACGCTTCTATGCTTACGTGAAAA-GC--AAA-CGCCA--AGA-ATCTGAGGGGGTATCAGCTCTACTCAA----CAA-GG-AAGGCTTCCTA-CAGAGCAATAGC--AAACAG-----AAAGCAAATATCCTCAACGACCAGTT--TCAGTCAGTCTAC
gi|12 : cccatttgagagccaagaagtctggtagacagagggactgggacaaatataacgaacttcaagttgaggtccaaaaagacactagatcaactgaacgtAAAATGTTTTGGAACTACATTAAA---T--CAA-GGAGAAGGGATAGC-ATGGGTGT-C--GCCTCACTGAATAAAGAA-AGCATTGCAATCTG-CGATGCC-CAATT-GAA----------AGCAAACATACTCAACGACCAATT--T--TTC--GCAGTATTCACT-AATGAAGATTTGTCACA-----CCGACCATATCTCCCTCCAAGCACCACGTC---------TTCCATCAATCCCATCACCGTGACAGTC------AAAGGTGTGCAAAAACTGCTCCAG--AACTTCAAac
gi|13 : ccgACACG--ATGGCAG---ACGA--TCAG--AGAAGCAA-CCCTAAACGGTTCTACAGCTTCATCAA---GTCCAAACGGA-A--GGG-TGCTTCTGGTGT-A--GTTCCTCTTAT-AAATAATGG-A-----ACATCACATAATGACAGTTTGAAG-------AAAGCTAACATCCTCAACGATCAGTTAAC--ATC---CTGTTTTTACTACG-GAAA-------A
gi|2 : cttatgtaggcaACATTAGAAATCATCCAAAACCAGCTAAATTCAAG---AGCCTTA-GAATCTTGAATATCAACTGCCAGAGTATTCGCAGGAAAGGGAAGCTGCTGGAA----GCCATTATAGACGACACAGAC----CCAGACATCATCATCGGCACTGAGACGTGGCT---AGACCCAGACATCAGATCTACAGAATTACT---ACCCCCCCAGCTGGAGTTTGACATCTTCCGTCGTGATCGACCAAACAGCCCCCATGGCGGCGTTCTTATCGCATCCAGGAAAC-ACCTCCAACTCGGAAACATCATTACAAGCAAACACAATGAGCTGATCAGTGCCTCGTTCACCG-CAAA-----CAAGAAGAAAATTGCCATTGCAGCCTTCTACAGACCACCCAACAAAGTTGACGAAGTTTACCTATCATCTG-TTAAAGAAGACTTCCTCA---CTCTAAGGA--AACAGGCCAAGAAGGGCATCTTAATTATAGCTGGAGACTTCAATCTCCCTGACATAGACTGGA-AAGACCAAACCATAACTGGAAA------CCA---ATACCCGTCTA-GAGTCAACCAATCATTCCTGGACATGGTATCA--GACAACAGTTTTGAACAAATCGTCAACTTCCCCACAAGAAAACAGAACACATTAGACATCATCCTAACAACTCATCCCAGCTTCAAACAACGATGCAAGCCCATGCCTTCTATTGG--T-AACAGCGACCACGATATTGTCCTGTTCGATAC----TA-CAATCACTGCGACACGTCCAAAACCACCAAGAAGAAAGATTCTCCTGTGGAAGAAAGCAGACATCAAAGGCATCAGGGACGACTTATCCGACCTATCGAGTATAACCAACCTGAATGACCCCTCCATAGAAGACTCTTGGGCTAGACTAAAGTCAAAAATACAAACTACCATTGAAAAGCGAGTCCCTTCGAAAATGACA-ACATCTAGAAATACACACCCATGGATGAATACCGAGAT---CAAGA-GATTAATTCGTAGAAAACAACGAGCATATAAGAAAGCGAGGCATTCC---AA-TC--AGAAACGGGACCTTGACAGG-----TATAAGC--GCCTACAGAAAG--AAGTA---CAATACCAGATACGAAAGGCC--A--AC-A----AGAAGTACT-TAGTGGACACG--GTG--AGT-CACGACTTCAA--AGA--CGA-CTCTAAGAAGTTCTGGACCTTCGTCAAAA-GT--AAA-GGACA--GGA-AGCCACTGGTGT-T--GCGCCACTAAA-AAACAA-GG-ATGGTTACCTC-CAAAGCAACAAT--GAAGCT-----AGAGCTAACATTCTCAACGAGCAATT--T--GTC--TCTGCCTTCACC-CGTGAAA-------ACA-----CCACCTACATC-----CCAGACA-TGGGTCAGAGTGAAATACCATCAATGTCA--AACATTACAGTCGACTGGAAAGGGGTCCACAAATTGCTGATG--AATCTCAAGACCAAGAAAGCCACTGGCCCAGACGAGATTCCAGCCTTCATa
gi|3 : GACATTTCAAACTCTACATCAGAATCGAGTCACAGC-TTTA----CAAAC-----TCAACTTTT---AGCTT-------GGTAGGCAGC---CCAGAAGCTTCATCCTCGCCGAAACCTAA-GCT-CCAAT-TTGGTA-----CCAAA-----CCAAAGACAAGGCGAGCACTACGAATATTGACCGTTAACTTCCAGAGTGTACGCAAGAA-GGGAAG------GAATATCGATGTTTTAGTTGAAACA-ACAAGGCCAGACATCATACTAGGAACAGAAACCTGGCTGTCAGAT---GACATCGCATCTCCATACTT-CTTCGATCCGTC--GCTTGGTTTTAAAGTTTACCGTCGAGATAGGCCGAATGTACCCCATGGCGGAGTGCTTCTAGCAGT-AAAAGACGATATTAAAGTGTTAGATGTTGGGACACACAAGCAACTTGAACTTATC----TCTGGT--ACCATCAAAATAGGCAAGAAGAGAATGGTCCTCACTTCATACTACCGTCCTCCAGATAAAGTTGATGAAAGTTATCT-TGAAATGGTCAGCGCCGAATTCA-CAAGACTC-AAGAATAAATA---CAAGAAGGCTATATTCATCATTGGAGGAGACTTCAACATTCCAGACGTTGATTGGACAAGA--AA--CACAATTTCAAAGGCACCTCATATATACCC-TCAACGTGTGAGCCAGGCATTCCTTGATAT--TGTCATGGATATGAGCCTTGAACAACTAGTAGATTTCCCAACTAGACTACAGAACACGCTTGATCTTGTTTTCACAAGCCACCCAAGTTTCAAGATACGATGCAAACCATTACCACCAATAGGACTAAAGAGTGACCATGTCATTGTTCTCCTAGACACAGCTCATCAACCCCAACGAC---TCC--GACTTCCTCGTAGAAAGATATATTTATGGAAGAAGGCCAACATAGATGGCATCA
gi|3 : tacccctTCCCTACTAAAATGTCCTGCA-CTCGACAGACACACCCTTGGGTCACCACCAAGCTGCGTAGGATGATGA----GAAGGAAGCAGAGAGCCCACTGGAGGGCCAGGAAGTCTGGGAACTCTAAGACATGGGA-----A-AGA-----TACAAGA--TATTACAAACAG--CAGTC---CAGAA--AGAGAC--CAGGAC--A--GCTG----AGAAGTCCTACATTCAAGACGTCGTT--AGC-GATGA-TCTGA--GGA--AGAGCCCCAAGCGTTTCTGGTCATATATAAAGA-GT--AAG-AGGCA--AGA-GACAGAAGGTGT-A--TCTCCCCTCAT-CAATAA-GG-ACAGATTCCTT-CAGAGTGA-------AAGCTCAAGAAAAGCGGACATCTTCAATGACCAATT--C--CAG--TCAGTCTATACC-AAAGAAG-------ACA-----CTACAAGTATT-----CCAGACA-AGGaacatcatatgacgcagtacagtcagacgtttaccgacacaaccttccagtctattgaatatatgtggacatcattcaaggcagtcatcgcatcatctttagaacagtatatccctactaaaatgtcctgcactcgacagacacacccttgggtcaccaccaagctgcgtaggatgatgagaaggaagcagagagcccactggagggccaggaagtctgggaactctaagacatgggaaagatacaagatattacaaacagcagtccagaaagagaccaggacagctgagaagtcctacattcaagacgtcgttagcgatgatctgaggaagagccccaagcgtttctggtcatatataaagagtaagaggcaagagacagaaggtgtatctcccctcatcaataaggacagattccttcagagtgaaagctcaagaaaagcggacatcttcaatgaccaattccagtcagtctataccaaagaagacactacaagtattccagacaagg
gi|4 : tacccctgacatttcaaactctacatcagaatcgagtcacagctttacaaactcaacttttagcttggtaggcagcccagaagcttcatcctcgccgaaacctaagctccaatttggtaccaaaccaaagacaaggcgagcactacgaatattgaccgttaacttccagagtgtacgcaagaagggaaggaatatcgatgttttagttgaaacaacaaggccagacatcatactaggaacagaaacctggctgtcagatgacatcgcatctccatacttcttcgatccgtcgcttggttttaaagtttaccgtcgagataggccgaatgtaccccatggcggagtgcttctagcagtaaaagacgatattaaagtgttagatgttgggacacacaagcaacttgaacttatctctggtaccatcaaaataggcaagaagagaatggtcctcacttcatactaccgtcctccagataaagttgatgaaagttatcttgaaatggtcagcgccgaattcacaagactcaagaataaatacaagaaggctatattcatcattggaggagacttcaacattccagacgttgattggacaagaaacacaatttcaaaggcacctcatatataccctcaacgtgtgagccaggcattccttgatattgtcatggatatgagccttgaacaactagtagatttcccaactagactacagaacacgcttgatcttgttttcacaagccacccaagtttcaagatacgatgcaaaccattaccaccaataggactaaagagtgaccatgtcattgttctcctagacacagctcatcaaccccaacgactccgacttcctcgtagaaagatatatttatggaagaaggccaacatagatggcatcaaacatcatatgacgcagtacagtcagacgtttaccgacacaaccttccagtctattgaatatatgtggacatcattcaaggcagtcatcgcatcatctttagaacagtataCAAGAAGGGCATCTTAATTATAGCTGGAGACTTCAATCTCCCTGACATAGACTGGA-AAGACCAAACCATAACTGGAAA------CCA---ATACCCGTTTA-GAGTCAACCAATCATTCCTGGACATGGTAGCA--GATAACAGTTTTGAACAAATCGTCAACTTCCCCACAAGAAAACAGAACACATTAGACATCATCCTAACTACTCATCCCAGCTTCAATCAACGATGCAAACCCATGCCTTCTATTGG--T-AACAGCGACCACGATATTGTCCTGTTCGATAC----TA-CAATCACTGCGACACGTCCAAAACCACCAAGAAGAAAGATTCTCCTGTGGAAGAAAGCAGACATCCAAGGCATCAGGGACGACTTATCCGACCTATCGGGTATAACCAACCTGAATGACCCCTCAATAGAAGACTCTTGGGCTACACTAAAGTCAAAAATACAAACTACCATTGAAAAGCGAGTCCCTTCGAAAATGACA-ACATCTAGAAATACACACCCATGGATGAATACTGAGAT---CAAGA-GACTAATTCGTAGAAAACAACGAGCACATAAGAAAGCGAGGCATTCC---AA-TC--AGAAACGGGACCTTGACAG
gi|4 : AGC--ACATA-AGAAAGCGAGGCATTCCAAT--CAGAAACGG--GACCTTG--AC-A-----GAAGTACT-TAGTGGACACG--GTG--AGT-CATGACTTCAA--AGA--CGA-CTCTAAGAAGTTCTGGGCCTTCGTCAAAAAGT--AAA-GGACA--GGA-AGCCACTGGTGT-T--GCGCCACTAAA-AAATAA-GG-ATGGTTACCTC-CAAAGCAACAAC--GAAGCT-----AGAGCTAACATTCTCAACGAGCAATT--T--GTC--TCTGCCTTCACC-CGTGAAA-------ACA-----CCACCTACATC-----CCAGACA-TGGGTCAGAGTGAAATACCATCAATGTCA--AACATTACAGTCGACTGGAAAGGGGTCCACAAATTGCTGATG--AATCTCAAGACCAAGAAAGCCACTGGCCCAGACGAGATTCCAGCCTTCATaagtacttagtggacacggtgagtcatgacttcaaagacgactctaagaagttctgggccttcgtcaaaaagtaaaggacaggaagccactggtgttgcgccactaaaaaataaggatggttacctccaaagcaacaacgaagctagagctaacattctcaacgagcaatttgtctctgccttcacccgtgaaaacaccacctacatcccagacatgggtcagagtgaaataccatcaatgtcaaacattacagtcgactggaaaggggtccacaaattgctgatgaatctcaagaccaagaaagccactggcccagacgagattccagccttcatc
gi|5 : caagaagggcatcttaattatagctggagacttcaatctccctgacatagactggaaagaccaaaccataactggaaaccaatacccgtttagagtcaaccaatcattcctggacatggtagcagataacagttttgaacaaatcgtcaacttccccacaagaaaacagaacacattagacatcatcctaactactcatcccagcttcaatcaacgatgcaaacccatgccttctattggtaacagcgaccacgatattgtcctgttcgatactacaatcactgcgacacgtccaaaaccaccaagaagaaagattctcctgtggaagaaagcagacatccaaggcatcagggacgacttatccgacctatcgggtataaccaacctgaatgacccctcaatagaagactcttgggctacactaaagtcaaaaatacaaactaccattgaaaagcgagtcccttcgaaaatgacaacatctagaaatacacacccatggatgaatactgagatcaagagactaattcgtagaaaacaacgGATCCCTCCATAGAAGACTCTTGGGCTAGATTGAAGTCAAAAATACAAACTGCCATTGAAAAGCGAGTCCCTTCGAAAATGACA-ACATCTAGAAACACAAACCCATGGATGAATGCTGAGAT---CAAGA-GATTGATTCTTAGAAAGCAGCGAGCACATAAGAAAGCGAGGCATTCC---AA-TC--AGAAACAGGACCTTGACAGG-----TATAAGC--CTCTACAGAAAG--AGGTA---CAATACTAGATACGTAAGGCC--A--AC-A----AGAAGTACT-TAGTGGACACG--GTG--AGT-CATGACTCCAA--AGA--CGA-CTCTAAGAAGTTCTGGGCCTTCATCAAAA-GC--AAA-GGACA--GGA-AGCCACTGGTGT-T--GCACAACTGAA-AAATAA-GG-ATGGTTACCTC-CAAAGCGACAAT--GAAGCT-----CTAGCTAACATTCTCGATGAGCAATT--T--GTC--TCCGCCTTCACC-AGTGAAA-------ACACCAGTCCACCTATACT-----CCAGACA-TGGGTCAGAGTGAAATACCCTCAATGCCA--AACATTGCAGTCGACTAGAAAGGGGTCCACAAATTGCTGATG--AATCTCAAGACAAAGAAAGCAGCTGGCCCAAACGAGATTCCAGCCTTTAc
gi|6 : ACTCTTGGGCTAGATTGAAGTTATAAATACAAACTACCATTGAAAAGTGAGTCCCTTCAAAAATGACA-ACATCTAGAAACACAAACCCATGGATGAATACTGAGAT---CAAGA-GGTTGATTCATAGAAAGCAGCGAGCACATAAGAAAGTGAGGCATTCC---AA-TC--AGAAATGGGACCTTGACAGGACTGGTATAAGC--ATCTACAGAAAG--AAGTA---CAATACCAGATACGTAAGTCC--A--AC-A----AGAAGTACT-TAGTAGACACG--GTG--AGC-CATGACTTCAA--AGA--CGA-CTCTAAGAAGTTCTAGGCCTTCGTCAAAA-GC--AAA-GGACA--GGA-AGCCACTGGTGT-T--GCACCACTGAA-AAATAA-GG-ATGGTTACCTC-CAAAGCGACAAT--GAAGCT-----AGAGCTAACATTCTCAATGAGCAATT--T--GTC--TATACCTTCACC-CGTGAAA-------ACA-----CCAACTACATT-----CCAAACA-TGGGTCAGAGTGAAATACTCTCAGTGCCA--AACATTGCAGTTGACTGGAAAGGGGTCCACAAATTGCTGATGAAAATCTCAAGGCGAAGAAAGCCA--------------ATTCCAGCCTTCAT
gi|7 : TCCCTACTAAAATGTCCTGCA-CTCGACAGACACACCCTTGGGTCACCACCAAGCTGCGTAGGATGATGA----GAAGGAAGCAGAGAGCCCACTGGCGGGCCAGGAAGTCTGGGAACTCTAAGACATGGGA-----A-AGA-----TACAAGA--TATTACAAACAG--CAGT---------CCAGA---AAGAGACC--AGAAC-AGCTGAGAAGTCCTACATTCAAGACGTCGTT--AGC-GATGATCT-GA--GGA--AGAGCCCCAAGCGTTTCTGGTCATATATAAAGA-GT--AAG-AGGCA--AGA-GACAGAAGGTGT-A--TCTCCCCTCAT-CAATAA-GG-ACGGATTCCTT-CAGAGTGA-------AAGCTCAAGAAAAGCGGACATCCTCAATGACCAATT--C--CAG--TCAGTCTATACC-AAAGAAG-------ACA-----CTACc
gi|8 : atatttatggaagaaggccaacatagatggcatcaagcatcatatgacgcagtacagtcagacgtttaccgacacaaccttccagtctattgaatgtatgtgggcatcattcaaggcagccatcgcatcttctttagaacagtataCC---AA-TC--AGAAACGGGACCTTGACAGG-----TATAAGC--GCCTACAGAAAG--AAGTA---CATTACCAGATACGAAAGGCC--A--AC-A----AGAAGTACT-TAGTGGACACG--GTG--AGT-CATGACTTCAA--AGA--TGA-CTCTAAGAAGTTCTGGGCCTTCGTCAAAA-GT--AAA-GGACA--GGA-AGCCACTGGTGT-T--GCGCCACTAAA-AAACAA-GG-ATGGTTACCTC-CAAAGCAACAAT--GAAGCT-----AGAGCTAACATTCTCAACGAGCAATT--T--GTC--TCTGCCTTCACC-CGTGAAA-------ACA-----CCACCTACATC-----CCAGACA-TGGGTCAGAGTGAAATACCATCAATGTCA--AACATTACAGTCGACTGGAAAGGGGTCCACAAATTGCTGATG--AATCTCAAGACCAAGAAAGCCACTGGCCCAGACGAGATTCCAGCCTTCAaagt
gi|9 : CATCTTAATAATAGCTGGAGACTTCAACCTCCCTGACGAAGACTGGA-AAAACCTAACCATAACTGGAAA------CCA---ATACCTGTTTA-GAGTCAACCAATAATTCCTGGACATGGTATCA--GACAACAGTTTTAAACAAATCGTCAACTTCCCCACAAGAAAACAGAACACATTAGACATCATCCTAACAACTCATCCCAGCTACAAACAACGATGCAAGCCCATACCCTCTATTGG--T-AACAGCGACCACGATATTGTCCTGTTCGATAC----TA-AGATCACTGCGACACGTCCAAAACCACCAAGAAGAAAGATTCTCTTATGGAAGAATGCAGACATCCAAGGCATCAGGGGCTACTTATCTGACCAATCAAGTATAATCAAACTGAATAATCCTTCCATAG
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): GACATCCTCAATGACCAATTCCAGTCAGTCTATATCAAAGAAGACACTATAAGTATTCCAGACAAGGGACCAAGCCCTCACCCAACTATGATGGGACTCAAGATCCGCCCCACCGGAGTCGCAAAGCTTCTTGGTAACCTTAAACCA
Unaligned ( gi|15 ): ATAGTCACTAATGAGTGAGATTCTGTCACACTGACCATCTCTCTCTCTTAGCACCAAGCCCTCCGTGAACCCCATCACCGGGACAGTCAAGGGAGTGCAGAACTTCTCCACAACCTG
Unaligned ( gi|16 ): ACTGATCACATACTCTCCCTCCAAACATAATGCTCTCCATAAACCCCATCACCACGAGAGTCAAAAGAGTGCAGAAACTACTCCAGAACCT
Unaligned ( gi|17 ): CCTCACCCAACTATGATGGGACTCAAGATCCGCCCCAACGGAGTCGCAAAGCTTCTTGGTAACCTTAAACCA
Unaligned ( gi|18 ): ATGATCAGAGAAGCAACACCAAAAGGATCATCAAATCCAAACAGCTTTTGGTGTAGCTCCTCTAACAAACA
Alignments
lowQualScore : 11 1 1 1 2222 22222 222 3333333 11 222 11 222 1 1 222 1 2222 2222 222 222 1 22 1 1 33333 1 222 11 222222 111 11 11 1111 1 222 1 111 1 11 11111 1111 11 1111 11 11111 1111111 11111 11111
lowQualScore : 1 1 1 88 5 5 5 3333 1 77777 1 000 3333333 77 111 88 000 5 5 7 7 7 333 3 7 6 8888 0 6 8888 333 6 0 7 333 3 00 0 0 0 7 3 0 0 7 7 3 33333 0 0 7 3 7 333 7 88 6 8 0 333333 444 8 11 11 8 7777 8 0 0 1 5 1 000 1 5 777 0 33 2 2 44444 9999 66 1111 1 4 0 22 66 8888 8 00 55 55 3 55 555 7 3 44 3 44 3 4444 6666 4 2 44 3 3 1 3 1 77 66666 1 0 44 44 44 3 0 1111111 00000 11111 4 66 66
lowQualScore : . . . .. . . . .... . ..... . ... ....... .. ... .. ... . . . . . ... . . . .... . . .... ... . . . ... . .. . . . . . . . . . . ..... . . . . . ... . .. . . . ...... ... . .. .. . .... . . . . . . ... . . ... . .. . . ..... .... .. .... . . . .. .. .... . .. .. .. . .. ... . . .. . .. . .... .... . . .. . . . . . .. ..... . . .. .. .. . . ....... ..... ..... . .. ..
lowQualScore : 0 0 0 00 0 0 5 5555 0 00000 0 555 0000000 55 555 00 555 5 5 3 3 3 333 3 3 7 3333 7 7 3333 333 7 7 3 333 3 77 7 7 7 3 3 7 7 3 3 3 33333 7 7 3 3 3 333 3 33 7 0 8 000000 000 0 00 00 0 0000 0 8 8 4 0 0 000 4 0 555 0 88 5 5 33333 9999 11 3333 8 8 1 22 11 9999 9 00 00 55 6 00 555 3 3 66 3 66 3 7777 7777 4 2 44 3 3 8 3 0 99 77777 5 4 66 66 66 6 2 8888888 00000 11111 4 99 99
consensus : NNNNNNGACATTTCANANTCNACATCAGAACCGAGTCACAGCATCTGAACCCGANCATATGTCNACCTTTGACAGCTTTAATACTGGTAGGCAGCTTTCCAGAAGCTTCATCCTCGCCGAAACCTAGTGCTACCAACATTAGAAATCATCCAAAACCAGCTAAATTCAA---GAGCCTTA-GAATCTTGAATATCAACTGCCAGAGTATTCGCAGGAAAGGGAAGCTGCTGGAA----GCCGTTATAGACGACACAGAC----CCAGACATCATCATCGGCACTGAGACGTGGCT---AGACCCAGACATCGGATCTACAGAATTACT---ACCCC-CCA-GCTGGAGTTTGACGTCTTCCGTCGTGATCGACCGAACGGCCCCCATGGCGGCGTTCTTATCGCATCCAAGAAAC-ACCTCCAACTCGGAAACGTCGTTACAAGCAAACACAATGAGCTGATCAGTGCCTCGTTCACCG-CAAA-----CAAGAAGAAAATTGCCATCGCAGCCTTCTACAGACCACCCGACAAAGTTGACGAAGTTTACCTATCATCT-GTTAAAGAAGACTTCCTC---ACTCTAAGG--AAACAGGCCAAGAAGGGCATCTTAATTATAGCTGGAGACTTCAATCTCCCTGACGTAGACTGGA-AAGACCAAACCATAACTGGAAA------CCA---ATACCCGTCTA-GAGTCAACCAATCATTCCTGGACATGGTATCA--GACAACAGTTTTGAACAAATCGTCAACTTCCCCACAAGAAAACAGAACACATTAGACATCATCCTAACAACTCATCCCAGCTTCAAACAACGATGCAAGCCCATGCCTTCTATTGG--T-AACAGCGACCACGATATTGTCCTGTTCGATAC----TA-CAATCACTGCGACACGTCCAAAACCACCAAGAAGAAAGATTCTCCTGTGGAAGAAAGCAGACATCCAAGGCATCAGGGACGACTTATCCGACCTATCGAGTATAACCAACCTGAATGACCCCTCCATAGAAGACTCTTGGGCTAGACTAAAGTCAAAAATACAAACTACCATTGAAAAGCGAGTCCCTTCGAAAATGACA-ACATCTAGAAANACACACCCATGGATGAATACCGAGAT---CAAGA-GATTAATTCGTAGAAAGCAGCGAGCACATAAGAAAGCGAGGCATTCC---AA-TC--AGAAACGGGACCTTGACAGG-----TATAAGC--GCCTACAGAAAG--AAGTA---CAATACCAGATACGAAAGGCC--A--ACA----AGAAGTACT-TAGTGGACACG--GTG--AGC-CATGACTTCAA--AGA--CGA-CTCTAAGAAGTTCTGGGCCTTCGTCAAAA-GT--AAA-GGACA--GGA-AGC-CGCTGGTGT-T--GCGCCACTNAA-AAATAA-GG-ATGGTTACCTC-CAAAGCGACAAT--GAAGCT-----AGAGCTAACATTCTCAACGAGCAATT--T--GTC--TCTGCCTTCACC-CGTGAAA-------ACA-----CCACCTACATC-----CCAGACA-TGGGTCAGAGTGAAATACCATCAATGCCA--AACATTACAGTCGACTGGAAAGGGGTCCACAAATTGCTGATG--AATCTCAAGACCAAGAAAGCCACTGGCCCAGACGAGATTCCAGCCTTCAT
Reference ( family-1 ) : NNNNNNGACATTTCANANTCNACATCAGAACCGAGTCACAGCATCTGAACCCGANCATATGTCNACCTTTGACAGCTTTAATACTGGTAGGCAGCTTTCCAGAAGCTTCATCCTCGCCGAAACCTAGTGCTACCAACATTAGAAATCATCCAAAACCAGCTAAATTCAA---GAGCCTTA-GAATCTTGAATATCAACTGCCAGAGTATTCGCAGGAAAGGGAAGCTGCTGGAA----GCCGTTATAGACGACACAGAC----CCAGACATCATCATCGGCACTGAGACGTGGCT---AGACCCAGACATCGGATCTACAGAATTACT---ACCCC-CCA-GCTGGAGTTTGACGTCTTCCGTCGTGATCGACCGAACGGCCCCCATGGCGGCGTTCTTATCGCATCCAAGAAAC-ACCTCCAACTCGGAAACGTCGTTACAAGCAAACACAATGAGCTGATCAGTGCCTCGTTCACCG-CAAA-----CAAGAAGAAAATTGCCATCGCAGCCTTCTACAGACCACCCGACAAAGTTGACGAAGTTTACCTATCATCT-GTTAAAGAAGACTTCCTC---ACTCTAAGG--AAACAGGCCAAGAAGGGCATCTTAATTATAGCTGGAGACTTCAATCTCCCTGACGTAGACTGGA-AAGACCAAACCATAACTGGAAA------CCA---ATACCCGTCTA-GAGTCAACCAATCATTCCTGGACATGGTATCA--GACAACAGTTTTGAACAAATCGTCAACTTCCCCACAAGAAAACAGAACACATTAGACATCATCCTAACAACTCATCCCAGCTTCAAACAACGATGCAAGCCCATGCCTTCTATTGG--T-AACAGCGACCACGATATTGTCCTGTTCGATAC----TA-CAATCACTGCGACACGTCCAAAACCACCAAGAAGAAAGATTCTCCTGTGGAAGAAAGCAGACATCCAAGGCATCAGGGACGACTTATCCGACCTATCGAGTATAACCAACCTGAATGACCCCTCCATAGAAGACTCTTGGGCTAGACTAAAGTCAAAAATACAAACTACCATTGAAAAGCGAGTCCCTTCGAAAATGACA-ACATCTAGAAANACACACCCATGGATGAATACCGAGAT---CAAGA-GATTAATTCGTAGAAAGCAGCGAGCACATAAGAAAGCGAGGCATTCC---AA-TC--AGAAACGGGACCTTGACAGG-----TATAAGC--GCCTACAGAAAG--AAGTA---CAATACCAGATACGAAAGGCC--A--ACA----AGAAGTACT-TAGTGGACACG--GTG--AGC-CATGACTTCAA--AGA--CGA-CTCTAAGAAGTTCTGGGCCTTCGTCAAAA-GT--AAA-GGACA--GGA-AGC-CGCTGGTGT-T--GCGCCACTNAA-AAATAA-GG-ATGGTTACCTC-CAAAGCGACAAT--GAAGCT-----AGAGCTAACATTCTCAACGAGCAATT--T--GTC--TCTGCCTTCACC-CGTGAAA-------ACA-----CCACCTACATC-----CCAGACA-TGGGTCAGAGTGAAATACCATCAATGCCA--AACATTACAGTCGACTGGAAAGGGGTCCACAAATTGCTGATG--AATCTCAAGACCAAGAAAGCCACTGGCCCAGACGAGATTCCAGCCTTCAT
gi|1 : GACATTTCACAATCAACA--AGAACC-AGT-ACAGCATCTGAACCCGACCATATGTCTACCTTTGACAGCTTTAATACTAGTA--CAGTTTTCCAGA--CTTCATC---ACCGAAACCTAGTACTACCAACATTAGAAATCATCCAAAACCAGCTAAATTCAA---GAGCCTTA-GAATCTTGAATATCAACTGCCAGAGTATTCGCAGGAAAGGGAAGCTGCTGGAA----GCCATTATAGACGACACAGAC----CCAGACATCATCATCGGCACTGAGACGTGGCT---AGACCCAGACATCAGATCTACAGAATTACT---ACCCC-CCAAGCTGGAGTTTGACATCTTCCGTCGTGATCGACCAAACAGCCCCCATGGCGGCGTTCTTATCGCATCCAAGAAAC-ACCTCCAACTCGGAAACATCATTACAAGCAAACACAATGAGCTGATCAGTGCCTCGTTCACCG-CAAA-----CAAGAAGAAAATTGCCATTGCAGCCTTCTACAGACCACCCAACAAAGTTGACGAAGTTTACCTATCATCT-GTTAAAGAAGACTTCCTC---ACTCTAAGG--AAACAGGCCAAGAAGGGCATCTTAATTATAGCTGGAGACTTCAATCTCCCTGACATAGACTGGA-AAGACCAAACCATAACTGGAAA------CCA---ATACCCGTCTA-GAGTCAACCAGTCATTCCTGGACATGGTATCA--GACAACAGTTTTGAACAAATCGTCAACTTCCCCACAAGAAAACAGAACACATTAGACATCATCCTAACAACTCATCCCAGCTTCAAACAACGATGCAAGCCCATGCCTTCTATTGG--T-AACAGCGACCATGATATTGTCCTGTTCGATAC----TA-CAATCACTGCGACACGTCCAAAACCACCAAGAAGAAAAATTCTCCTGTGGAAGAAAGCAGACATCCAAGGCATCAGGGACGACTTATCCGACCTATCGAGTATAACCAACCTGAATGACCCCTCCATAGAAGACTCTTGGGCTAGACTAAAGTCAAAAATACAAACTACCATTGAAAAGCGAGTCCCTTCGAAAATGACA-ACATCTAGAAATACTCACCCATGGATGAATACCGAGAT---CAAGA-GATTAATTCGTAGAAAACAACGAGCACATAAGAAAGCGAGGCATTCC---AA-TC--AGAAACGGGACCTTGACAGG-----TATAAGC--GCCTACAGAAAG--AAGTA---CAATACCAGATACGAAAGGCC--A--ACA----AGAAGTACT-TAGTGGACACG--GTG--AGT-CAGGACTTCAA--AGA--CGA-CTCTAAGAAGTTCTGGGCCTTCGTCAAAA-GT--AAA-GGACA--GGA-AGC-CACTGGTGT-T--GCGCCACTAAA-AAACAA-GG-ATGGTTACCTC-CAAAGCAACAAT--GAAGCT-----AGAGCTAACATTCTCAACGAGCAATT--T--GTC--TCTGCCTTCACC-CGTGAAA-------ACA-----CCACCTACATC-----CCAGACA-TGGGTCAGAGTGAAATACCATCAATGTCA--AACATTACAGTCGACTGGAAAGGGGTCCACAAATTGCTGATG--AATCTCAAGACCAAGAAAGCCACTGGCCCAGACGAGATTCCAGCCTTCAT
gi|10 : atctcaATAAACAGGACTGCAGAAAG--AAGTG---CAACACCAAATATGGAAGGTC--A--ACA----AGAAATACC-TTGGGGACACA--GTG--AGC-CAAAACTTCAA--GGA--CAA-CTCC-ATAAGTTTTGGGATTTCATCAGAA-TC--AAA-TGACC--GGA-AGA-TACTGGTAT-T--GCA---------------------GGTTTGCTT-CAGAGCGATAAT--GCAGCC-----AGAACAAACAATCTAAACGTGCAATT--T--GTA--TCTGCATTTACC-CATGAGA-------A-----------------T-----TCAGACA-TGGGACAGAGCGACCTATCACCAATACCA--AGCATTAGTGTTGACTGGTAGGGTGTACACAAGTTGCTGCTG--AGTCTCAATACTGAAAATGCCACTACCCAAGATTAGATTTTAGCC
gi|11 : GACGTG--GTA--TGCACAT-ACTTGAAGCAGA----A-CTCCAAACGCTTCTATGCTTACGTGAAAA-GC--AAA-CGCCA--AGA-ATC-TGAGGGGGTATCAGCTCTACTCAA----CAA-GG-AAGGCTTCCTA-CAGAGCAATAGC--AAACAG-----AAAGCAAATATCCTCAACGACCAGTT--TCAGTCAGTCTAC
gi|12 : cccatttgagagccaagaagtctggtagacagagggactgggacaaatataacgaacttcaagttgaggtccaaaaagacactagatcaactgaacgtAAAATGTTTTGGAACTACATTAAA---T--CAA-GGAGAAGGGATAGCATG--GGTGT-C--GCCTCACTGAATAAAGAA-AGCATTGCAATCTG-CGATGCC-CAATT-GAA----------AGCAAACATACTCAACGACCAATT--T--TTC--GCAGTATTCACT-AATGAAGATTTGTCACA-----CCGACCATATCTCCCTCCAAGCACCACGTC---------TTCCATCAATCCCATCACCGTGACAGTC------AAAGGTGTGCAAAAACTGCTCCAG--AACTTCAAac
gi|13 : ccgACACG--ATGGCAG---ACGA--TCAG--AGAAGCAA-CCCTAAACGGTTCTACAGCTTCATCAA---GTCCAAACGGA-A--GGG-TGC-TTCTGGTGT-A--GTTCCTCTTAT-AAATAATGG-A-----ACATCACATAATGACAGTTTGAAG-------AAAGCTAACATCCTCAACGATCAGTTAAC--ATC---CTGTTTTTACTACG-GAAA-------A
gi|2 : cttatgtaggcaACATTAGAAATCATCCAAAACCAGCTAAATTCAA---GAGCCTTA-GAATCTTGAATATCAACTGCCAGAGTATTCGCAGGAAAGGGAAGCTGCTGGAA----GCCATTATAGACGACACAGAC----CCAGACATCATCATCGGCACTGAGACGTGGCT---AGACCCAGACATCAGATCTACAGAATTACT---ACCCCCCCA-GCTGGAGTTTGACATCTTCCGTCGTGATCGACCAAACAGCCCCCATGGCGGCGTTCTTATCGCATCCAGGAAAC-ACCTCCAACTCGGAAACATCATTACAAGCAAACACAATGAGCTGATCAGTGCCTCGTTCACCG-CAAA-----CAAGAAGAAAATTGCCATTGCAGCCTTCTACAGACCACCCAACAAAGTTGACGAAGTTTACCTATCATCT-GTTAAAGAAGACTTCCTC---ACTCTAAGG--AAACAGGCCAAGAAGGGCATCTTAATTATAGCTGGAGACTTCAATCTCCCTGACATAGACTGGA-AAGACCAAACCATAACTGGAAA------CCA---ATACCCGTCTA-GAGTCAACCAATCATTCCTGGACATGGTATCA--GACAACAGTTTTGAACAAATCGTCAACTTCCCCACAAGAAAACAGAACACATTAGACATCATCCTAACAACTCATCCCAGCTTCAAACAACGATGCAAGCCCATGCCTTCTATTGG--T-AACAGCGACCACGATATTGTCCTGTTCGATAC----TA-CAATCACTGCGACACGTCCAAAACCACCAAGAAGAAAGATTCTCCTGTGGAAGAAAGCAGACATCAAAGGCATCAGGGACGACTTATCCGACCTATCGAGTATAACCAACCTGAATGACCCCTCCATAGAAGACTCTTGGGCTAGACTAAAGTCAAAAATACAAACTACCATTGAAAAGCGAGTCCCTTCGAAAATGACA-ACATCTAGAAATACACACCCATGGATGAATACCGAGAT---CAAGA-GATTAATTCGTAGAAAACAACGAGCATATAAGAAAGCGAGGCATTCC---AA-TC--AGAAACGGGACCTTGACAGG-----TATAAGC--GCCTACAGAAAG--AAGTA---CAATACCAGATACGAAAGGCC--A--ACA----AGAAGTACT-TAGTGGACACG--GTG--AGT-CACGACTTCAA--AGA--CGA-CTCTAAGAAGTTCTGGACCTTCGTCAAAA-GT--AAA-GGACA--GGA-AGC-CACTGGTGT-T--GCGCCACTAAA-AAACAA-GG-ATGGTTACCTC-CAAAGCAACAAT--GAAGCT-----AGAGCTAACATTCTCAACGAGCAATT--T--GTC--TCTGCCTTCACC-CGTGAAA-------ACA-----CCACCTACATC-----CCAGACA-TGGGTCAGAGTGAAATACCATCAATGTCA--AACATTACAGTCGACTGGAAAGGGGTCCACAAATTGCTGATG--AATCTCAAGACCAAGAAAGCCACTGGCCCAGACGAGATTCCAGCCTTCATa
gi|3 : GACATTTCAAACTCTACATCAGAATCGAGTCACAGC-TTTA----CAAAC-----TCAACTTTT---AGCT-------TGGTAGGCAGC---CCAGAAGCTTCATCCTCGCCGAAACCTAA-GCT-CCAAT-TTGGTA-----CCAAA-----CCAAAGACAAGGCGAGCACTACGAATATTGACCGTTAACTTCCAGAGTGTACGCAAG-AAGGGAA------GGAATATCGATGTTTTAGTTGAAACA-ACAAGGCCAGACATCATACTAGGAACAGAAACCTGGCTGTCAGAT---GACATCGCATCTCCATACTT-CTTCGATCCG-TC--GCTTGGTTTTAAAGTTTACCGTCGAGATAGGCCGAATGTACCCCATGGCGGAGTGCTTCTAGCA-GTAAAAGACGATATTAAAGTGTTAGATGTTGGGACACACAAGCAACTTGAACTTATC----TCTGGT--ACCATCAAAATAGGCAAGAAGAGAATGGTCCTCACTTCATACTACCGTCCTCCAGATAAAGTTGATGAAAGTTATCT-TGAAATGGTCAGCGCCGAATTCA-CAAGACTC-AAGAATAAATA---CAAGAAGGCTATATTCATCATTGGAGGAGACTTCAACATTCCAGACGTTGATTGGACAAGA--AA--CACAATTTCAAAGGCACCTCATATATACCC-TCAACGTGTGAGCCAGGCATTCCTTGATAT--TGTCATGGATATGAGCCTTGAACAACTAGTAGATTTCCCAACTAGACTACAGAACACGCTTGATCTTGTTTTCACAAGCCACCCAAGTTTCAAGATACGATGCAAACCATTACCACCAATAGGACTAAAGAGTGACCATGTCATTGTTCTCCTAGACACAGCTCATCAACCCCAACGAC---TCC--GACTTCCTCGTAGAAAGATATATTTATGGAAGAAGGCCAACATAGATGGCATCA
gi|3 : tacccctTCCCTACTAAAATGTCCTGCA-CTCGACAGACACACCCTTGGGTCACCACCAAGCTGCGTAGGATGATGA----GAAGGAAGCAGAGAGCCCACTGGAGGGCCAGGAAGTCTGGGAACTCTAAGACATGGGA-----A-AGA-----TACAAGA--TATTACAAACAG--CAGT---------CCAGA---AAGAGACC--AGGACAGCTGAGAAGTCCTACATTCAAGACGTCGTT--AGC-GATGA-TCTGA--GGA--AGAGCCCCAAGCGTTTCTGGTCATATATAAAGA-GT--AAG-AGGCA--AGA-GAC-AGAAGGTGT-A--TCTCCCCTCAT-CAATAA-GG-ACAGATTCCTT-CAGAGTGA-------AAGCTCAAGAAAAGCGGACATCTTCAATGACCAATT--C--CAG--TCAGTCTATACC-AAAGAAG-------ACA-----CTACAAGTATT-----CCAGACA-AGGaacatcatatgacgcagtacagtcagacgtttaccgacacaaccttccagtctattgaatatatgtggacatcattcaaggcagtcatcgcatcatctttagaacagtatatccctactaaaatgtcctgcactcgacagacacacccttgggtcaccaccaagctgcgtaggatgatgagaaggaagcagagagcccactggagggccaggaagtctgggaactctaagacatgggaaagatacaagatattacaaacagcagtccagaaagagaccaggacagctgagaagtcctacattcaagacgtcgttagcgatgatctgaggaagagccccaagcgtttctggtcatatataaagagtaagaggcaagagacagaaggtgtatctcccctcatcaataaggacagattccttcagagtgaaagctcaagaaaagcggacatcttcaatgaccaattccagtcagtctataccaaagaagacactacaagtattccagacaagg
gi|4 : tacccctgacatttcaaactctacatcagaatcgagtcacagctttacaaactcaacttttagcttggtaggcagcccagaagcttcatcctcgccgaaacctaagctccaatttggtaccaaaccaaagacaaggcgagcactacgaatattgaccgttaacttccagagtgtacgcaagaagggaaggaatatcgatgttttagttgaaacaacaaggccagacatcatactaggaacagaaacctggctgtcagatgacatcgcatctccatacttcttcgatccgtcgcttggttttaaagtttaccgtcgagataggccgaatgtaccccatggcggagtgcttctagcagtaaaagacgatattaaagtgttagatgttgggacacacaagcaacttgaacttatctctggtaccatcaaaataggcaagaagagaatggtcctcacttcatactaccgtcctccagataaagttgatgaaagttatcttgaaatggtcagcgccgaattcacaagactcaagaataaatacaagaaggctatattcatcattggaggagacttcaacattccagacgttgattggacaagaaacacaatttcaaaggcacctcatatataccctcaacgtgtgagccaggcattccttgatattgtcatggatatgagccttgaacaactagtagatttcccaactagactacagaacacgcttgatcttgttttcacaagccacccaagtttcaagatacgatgcaaaccattaccaccaataggactaaagagtgaccatgtcattgttctcctagacacagctcatcaaccccaacgactccgacttcctcgtagaaagatatatttatggaagaaggccaacatagatggcatcaaacatcatatgacgcagtacagtcagacgtttaccgacacaaccttccagtctattgaatatatgtggacatcattcaaggcagtcatcgcatcatctttagaacagtataCAAGAAGGGCATCTTAATTATAGCTGGAGACTTCAATCTCCCTGACATAGACTGGA-AAGACCAAACCATAACTGGAAA------CCA---ATACCCGTTTA-GAGTCAACCAATCATTCCTGGACATGGTAGCA--GATAACAGTTTTGAACAAATCGTCAACTTCCCCACAAGAAAACAGAACACATTAGACATCATCCTAACTACTCATCCCAGCTTCAATCAACGATGCAAACCCATGCCTTCTATTGG--T-AACAGCGACCACGATATTGTCCTGTTCGATAC----TA-CAATCACTGCGACACGTCCAAAACCACCAAGAAGAAAGATTCTCCTGTGGAAGAAAGCAGACATCCAAGGCATCAGGGACGACTTATCCGACCTATCGGGTATAACCAACCTGAATGACCCCTCAATAGAAGACTCTTGGGCTACACTAAAGTCAAAAATACAAACTACCATTGAAAAGCGAGTCCCTTCGAAAATGACA-ACATCTAGAAATACACACCCATGGATGAATACTGAGAT---CAAGA-GACTAATTCGTAGAAAACAACGAGCACATAAGAAAGCGAGGCATTCC---AA-TC--AGAAACGGGACCTTGACAG
gi|4 : AGC--ACATA-AGAAAGCGAGGCATTCCAAT--CAGAAACGG--GACCTTG--ACA-----GAAGTACT-TAGTGGACACG--GTG--AGT-CATGACTTCAA--AGA--CGA-CTCTAAGAAGTTCTGGGCCTTCGTCAAAAAGT--AAA-GGACA--GGA-AGC-CACTGGTGT-T--GCGCCACTAAA-AAATAA-GG-ATGGTTACCTC-CAAAGCAACAAC--GAAGCT-----AGAGCTAACATTCTCAACGAGCAATT--T--GTC--TCTGCCTTCACC-CGTGAAA-------ACA-----CCACCTACATC-----CCAGACA-TGGGTCAGAGTGAAATACCATCAATGTCA--AACATTACAGTCGACTGGAAAGGGGTCCACAAATTGCTGATG--AATCTCAAGACCAAGAAAGCCACTGGCCCAGACGAGATTCCAGCCTTCATaagtacttagtggacacggtgagtcatgacttcaaagacgactctaagaagttctgggccttcgtcaaaaagtaaaggacaggaagccactggtgttgcgccactaaaaaataaggatggttacctccaaagcaacaacgaagctagagctaacattctcaacgagcaatttgtctctgccttcacccgtgaaaacaccacctacatcccagacatgggtcagagtgaaataccatcaatgtcaaacattacagtcgactggaaaggggtccacaaattgctgatgaatctcaagaccaagaaagccactggcccagacgagattccagccttcatc
gi|5 : caagaagggcatcttaattatagctggagacttcaatctccctgacatagactggaaagaccaaaccataactggaaaccaatacccgtttagagtcaaccaatcattcctggacatggtagcagataacagttttgaacaaatcgtcaacttccccacaagaaaacagaacacattagacatcatcctaactactcatcccagcttcaatcaacgatgcaaacccatgccttctattggtaacagcgaccacgatattgtcctgttcgatactacaatcactgcgacacgtccaaaaccaccaagaagaaagattctcctgtggaagaaagcagacatccaaggcatcagggacgacttatccgacctatcgggtataaccaacctgaatgacccctcaatagaagactcttgggctacactaaagtcaaaaatacaaactaccattgaaaagcgagtcccttcgaaaatgacaacatctagaaatacacacccatggatgaatactgagatcaagagactaattcgtagaaaacaacgGATCCCTCCATAGAAGACTCTTGGGCTAGATTGAAGTCAAAAATACAAACTGCCATTGAAAAGCGAGTCCCTTCGAAAATGACA-ACATCTAGAAACACAAACCCATGGATGAATGCTGAGAT---CAAGA-GATTGATTCTTAGAAAGCAGCGAGCACATAAGAAAGCGAGGCATTCC---AA-TC--AGAAACAGGACCTTGACAGG-----TATAAGC--CTCTACAGAAAG--AGGTA---CAATACTAGATACGTAAGGCC--A--ACA----AGAAGTACT-TAGTGGACACG--GTG--AGT-CATGACTCCAA--AGA--CGA-CTCTAAGAAGTTCTGGGCCTTCATCAAAA-GC--AAA-GGACA--GGA-AGC-CACTGGTGT-T--GCACAACTGAA-AAATAA-GG-ATGGTTACCTC-CAAAGCGACAAT--GAAGCT-----CTAGCTAACATTCTCGATGAGCAATT--T--GTC--TCCGCCTTCACC-AGTGAAA-------ACACCAGTCCACCTATACT-----CCAGACA-TGGGTCAGAGTGAAATACCCTCAATGCCA--AACATTGCAGTCGACTAGAAAGGGGTCCACAAATTGCTGATG--AATCTCAAGACAAAGAAAGCAGCTGGCCCAAACGAGATTCCAGCCTTTAc
gi|6 : ACTCTTGGGCTAGATTGAAGTTATAAATACAAACTACCATTGAAAAGTGAGTCCCTTCAAAAATGACA-ACATCTAGAAACACAAACCCATGGATGAATACTGAGAT---CAAGA-GGTTGATTCATAGAAAGCAGCGAGCACATAAGAAAGTGAGGCATTCC---AA-TC--AGAAATGGGACCTTGACAGGACTGGTATAAGC--ATCTACAGAAAG--AAGTA---CAATACCAGATACGTAAGTCC--A--ACA----AGAAGTACT-TAGTAGACACG--GTG--AGC-CATGACTTCAA--AGA--CGA-CTCTAAGAAGTTCTAGGCCTTCGTCAAAA-GC--AAA-GGACA--GGA-AGC-CACTGGTGT-T--GCACCACTGAA-AAATAA-GG-ATGGTTACCTC-CAAAGCGACAAT--GAAGCT-----AGAGCTAACATTCTCAATGAGCAATT--T--GTC--TATACCTTCACC-CGTGAAA-------ACA-----CCAACTACATT-----CCAAACA-TGGGTCAGAGTGAAATACTCTCAGTGCCA--AACATTGCAGTTGACTGGAAAGGGGTCCACAAATTGCTGATGAAAATCTCAAGGCGAAGAAAGCCA--------------ATTCCAGCCTTCAT
gi|7 : TCCCTACTAAAATGTCCTGCA-CTCGACAGACACACCCTTGGGTCACCACCAAGCTGCGTAGGATGATGA----GAAGGAAGCAGAGAGCCCACTGGCGGGCCAGGAAGTCTGGGAACTCTAAGACATGGGA-----A-AGA-----TACAAGA--TATTACAAACAG--CAGT---------CCAGA---AAGAGACCAGA--ACAGCTGAGAAGTCCTACATTCAAGACGTCGTT--AGC-GATGA-TCTGA--GGA--AGAGCCCCAAGCGTTTCTGGTCATATATAAAGA-GT--AAG-AGGCA--AGA-GAC-AGAAGGTGT-A--TCTCCCCTCAT-CAATAA-GG-ACGGATTCCTT-CAGAGTGA-------AAGCTCAAGAAAAGCGGACATCCTCAATGACCAATT--C--CAG--TCAGTCTATACC-AAAGAAG-------ACA-----CTACc
gi|8 : atatttatggaagaaggccaacatagatggcatcaagcatcatatgacgcagtacagtcagacgtttaccgacacaaccttccagtctattgaatgtatgtgggcatcattcaaggcagccatcgcatcttctttagaacagtataCC---AA-TC--AGAAACGGGACCTTGACAGG-----TATAAGC--GCCTACAGAAAG--AAGTA---CATTACCAGATACGAAAGGCC--A--ACA----AGAAGTACT-TAGTGGACACG--GTG--AGT-CATGACTTCAA--AGA--TGA-CTCTAAGAAGTTCTGGGCCTTCGTCAAAA-GT--AAA-GGACA--GGA-AGC-CACTGGTGT-T--GCGCCACTAAA-AAACAA-GG-ATGGTTACCTC-CAAAGCAACAAT--GAAGCT-----AGAGCTAACATTCTCAACGAGCAATT--T--GTC--TCTGCCTTCACC-CGTGAAA-------ACA-----CCACCTACATC-----CCAGACA-TGGGTCAGAGTGAAATACCATCAATGTCA--AACATTACAGTCGACTGGAAAGGGGTCCACAAATTGCTGATG--AATCTCAAGACCAAGAAAGCCACTGGCCCAGACGAGATTCCAGCCTTCAaagt
gi|9 : CATCTTAATAATAGCTGGAGACTTCAACCTCCCTGACGAAGACTGGA-AAAACCTAACCATAACTGGAAA------CCA---ATACCTGTTTA-GAGTCAACCAATAATTCCTGGACATGGTATCA--GACAACAGTTTTAAACAAATCGTCAACTTCCCCACAAGAAAACAGAACACATTAGACATCATCCTAACAACTCATCCCAGCTACAAACAACGATGCAAGCCCATACCCTCTATTGG--T-AACAGCGACCACGATATTGTCCTGTTCGATAC----TA-AGATCACTGCGACACGTCCAAAACCACCAAGAAGAAAGATTCTCTTATGGAAGAATGCAGACATCCAAGGCATCAGGGGCTACTTATCTGACCAATCAAGTATAATCAAACTGAATAATCCTTCCATAG
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): GACATCCTCAATGACCAATTCCAGTCAGTCTATATCAAAGAAGACACTATAAGTATTCCAGACAAGGGACCAAGCCCTCACCCAACTATGATGGGACTCAAGATCCGCCCCACCGGAGTCGCAAAGCTTCTTGGTAACCTTAAACCA
Unaligned ( gi|15 ): ATAGTCACTAATGAGTGAGATTCTGTCACACTGACCATCTCTCTCTCTTAGCACCAAGCCCTCCGTGAACCCCATCACCGGGACAGTCAAGGGAGTGCAGAACTTCTCCACAACCTG
Unaligned ( gi|16 ): ACTGATCACATACTCTCCCTCCAAACATAATGCTCTCCATAAACCCCATCACCACGAGAGTCAAAAGAGTGCAGAAACTACTCCAGAACCT
Unaligned ( gi|17 ): CCTCACCCAACTATGATGGGACTCAAGATCCGCCCCAACGGAGTCGCAAAGCTTCTTGGTAACCTTAAACCA
Unaligned ( gi|18 ): ATGATCAGAGAAGCAACACCAAAAGGATCATCAAATCCAAACAGCTTTTGGTGTAGCTCCTCTAACAAACA
Alignments
lowQualScore : 11 1 1 1 2222 22222 222 3333333 11 222 11 222 1 1 222 1 2222 2222 222 222 1 22 1 1 33333 1 222 11 222222 111 11 11 1111 1 222 1 111 1 11 11111 1111 11 1111 11 11111 1111111 11111 11111
lowQualScore : 1 1 1 88 5 5 5 3333 1 77777 1 000 3333333 77 111 88 000 5 5 7 7 7 333 3 7 6 8888 0 6 8888 333 6 0 7 333 3 00 0 0 0 7 3 0 0 7 7 3 33333 0 0 7 3 7 333 7 88 6 8 0 333333 444 8 11 11 8 7777 8 0 0 1 5 1 000 1 5 777 0 33 2 2 44444 9999 66 1111 1 4 0 22 66 8888 8 00 55 55 3 55 555 7 3 44 3 44 3 4444 6666 4 2 44 3 3 1 3 1 77 66666 1 0 44 44 44 3 0 1111111 00000 11111 4 66 66
lowQualScore : . . . .. . . . .... . ..... . ... ....... .. ... .. ... . . . . . ... . . . .... . . .... ... . . . ... . .. . . . . . . . . . . ..... . . . . . ... . .. . . . ...... ... . .. .. . .... . . . . . . ... . . ... . .. . . ..... .... .. .... . . . .. .. .... . .. .. .. . .. ... . . .. . .. . .... .... . . .. . . . . . .. ..... . . .. .. .. . . ....... ..... ..... . .. ..
lowQualScore : 0 0 0 00 0 0 5 5555 0 00000 0 555 0000000 55 555 00 555 5 5 3 3 3 333 3 3 7 3333 7 7 3333 333 7 7 3 333 3 77 7 7 7 3 3 7 7 3 3 3 33333 7 7 3 3 3 333 3 33 7 0 8 000000 000 0 00 00 0 0000 0 8 8 4 0 0 000 4 0 555 0 88 5 5 33333 9999 11 3333 8 8 1 22 11 9999 9 00 00 55 6 00 555 3 3 66 3 66 3 7777 7777 4 2 44 3 3 8 3 0 99 77777 5 4 66 66 66 6 2 8888888 00000 11111 4 99 99
consensus : NNNNNNGACATTTCANANTCNACATCAGAACCGAGTCACAGCATCTGAACCCGANCATATGTCNACCTTTGACAGCTTTAATACTGGTAGGCAGCTTTCCAGAAGCTTCATCCTCGCCGAAACCTAGTGCTACCAACATTAGAAATCATCCAAAACCAGCTAAATTCAA---GAGCCTTA-GAATCTTGAATATCAACTGCCAGAGTATTCGCAGGAAAGGGAAGCTGCTGGAA----GCCGTTATAGACGACACAGAC----CCAGACATCATCATCGGCACTGAGACGTGGCT---AGACCCAGACATCGGATCTACAGAATTACT---ACCCC-CCA-GCTGGAGTTTGACGTCTTCCGTCGTGATCGACCGAACGGCCCCCATGGCGGCGTTCTTATCGCATCCAAGAAAC-ACCTCCAACTCGGAAACGTCGTTACAAGCAAACACAATGAGCTGATCAGTGCCTCGTTCACCG-CAAA-----CAAGAAGAAAATTGCCATCGCAGCCTTCTACAGACCACCCGACAAAGTTGACGAAGTTTACCTATCATCT-GTTAAAGAAGACTTCCTC---ACTCTAAGG--AAACAGGCCAAGAAGGGCATCTTAATTATAGCTGGAGACTTCAATCTCCCTGACGTAGACTGGA-AAGACCAAACCATAACTGGAAA------CCA---ATACCCGTCTA-GAGTCAACCAATCATTCCTGGACATGGTATCA--GACAACAGTTTTGAACAAATCGTCAACTTCCCCACAAGAAAACAGAACACATTAGACATCATCCTAACAACTCATCCCAGCTTCAAACAACGATGCAAGCCCATGCCTTCTATTGG--T-AACAGCGACCACGATATTGTCCTGTTCGATAC----TA-CAATCACTGCGACACGTCCAAAACCACCAAGAAGAAAGATTCTCCTGTGGAAGAAAGCAGACATCCAAGGCATCAGGGACGACTTATCCGACCTATCGAGTATAACCAACCTGAATGACCCCTCCATAGAAGACTCTTGGGCTAGACTAAAGTCAAAAATACAAACTACCATTGAAAAGCGAGTCCCTTCGAAAATGACA-ACATCTAGAAANACACACCCATGGATGAATACCGAGAT---CAAGA-GATTAATTCGTAGAAAGCAGCGAGCACATAAGAAAGCGAGGCATTCC---AA-TC--AGAAACGGGACCTTGACAGG-----TATAAGC--GCCTACAGAAAG--AAGTA---CAATACCAGATACGAAAGGCC--A--ACA----AGAAGTACT-TAGTGGACACG--GTG--AGC-CATGACTTCAA--AGA--CGA-CTCTAAGAAGTTCTGGGCCTTCGTCAAAA-GT--AAA-GGACA--GGA-AGC-CGCTGGTGT-T--GCGCCACTNAA-AAATAA-GG-ATGGTTACCTC-CAAAGCGACAAT--GAAGCT-----AGAGCTAACATTCTCAACGAGCAATT--T--GTC--TCTGCCTTCACC-CGTGAAA-------ACA-----CCACCTACATC-----CCAGACA-TGGGTCAGAGTGAAATACCATCAATGCCA--AACATTACAGTCGACTGGAAAGGGGTCCACAAATTGCTGATG--AATCTCAAGACCAAGAAAGCCACTGGCCCAGACGAGATTCCAGCCTTCAT
Reference ( family-1 ) : NNNNNNGACATTTCANANTCNACATCAGAACCGAGTCACAGCATCTGAACCCGANCATATGTCNACCTTTGACAGCTTTAATACTGGTAGGCAGCTTTCCAGAAGCTTCATCCTCGCCGAAACCTAGTGCTACCAACATTAGAAATCATCCAAAACCAGCTAAATTCAA---GAGCCTTA-GAATCTTGAATATCAACTGCCAGAGTATTCGCAGGAAAGGGAAGCTGCTGGAA----GCCGTTATAGACGACACAGAC----CCAGACATCATCATCGGCACTGAGACGTGGCT---AGACCCAGACATCGGATCTACAGAATTACT---ACCCC-CCA-GCTGGAGTTTGACGTCTTCCGTCGTGATCGACCGAACGGCCCCCATGGCGGCGTTCTTATCGCATCCAAGAAAC-ACCTCCAACTCGGAAACGTCGTTACAAGCAAACACAATGAGCTGATCAGTGCCTCGTTCACCG-CAAA-----CAAGAAGAAAATTGCCATCGCAGCCTTCTACAGACCACCCGACAAAGTTGACGAAGTTTACCTATCATCT-GTTAAAGAAGACTTCCTC---ACTCTAAGG--AAACAGGCCAAGAAGGGCATCTTAATTATAGCTGGAGACTTCAATCTCCCTGACGTAGACTGGA-AAGACCAAACCATAACTGGAAA------CCA---ATACCCGTCTA-GAGTCAACCAATCATTCCTGGACATGGTATCA--GACAACAGTTTTGAACAAATCGTCAACTTCCCCACAAGAAAACAGAACACATTAGACATCATCCTAACAACTCATCCCAGCTTCAAACAACGATGCAAGCCCATGCCTTCTATTGG--T-AACAGCGACCACGATATTGTCCTGTTCGATAC----TA-CAATCACTGCGACACGTCCAAAACCACCAAGAAGAAAGATTCTCCTGTGGAAGAAAGCAGACATCCAAGGCATCAGGGACGACTTATCCGACCTATCGAGTATAACCAACCTGAATGACCCCTCCATAGAAGACTCTTGGGCTAGACTAAAGTCAAAAATACAAACTACCATTGAAAAGCGAGTCCCTTCGAAAATGACA-ACATCTAGAAANACACACCCATGGATGAATACCGAGAT---CAAGA-GATTAATTCGTAGAAAGCAGCGAGCACATAAGAAAGCGAGGCATTCC---AA-TC--AGAAACGGGACCTTGACAGG-----TATAAGC--GCCTACAGAAAG--AAGTA---CAATACCAGATACGAAAGGCC--A--ACA----AGAAGTACT-TAGTGGACACG--GTG--AGC-CATGACTTCAA--AGA--CGA-CTCTAAGAAGTTCTGGGCCTTCGTCAAAA-GT--AAA-GGACA--GGA-AGC-CGCTGGTGT-T--GCGCCACTNAA-AAATAA-GG-ATGGTTACCTC-CAAAGCGACAAT--GAAGCT-----AGAGCTAACATTCTCAACGAGCAATT--T--GTC--TCTGCCTTCACC-CGTGAAA-------ACA-----CCACCTACATC-----CCAGACA-TGGGTCAGAGTGAAATACCATCAATGCCA--AACATTACAGTCGACTGGAAAGGGGTCCACAAATTGCTGATG--AATCTCAAGACCAAGAAAGCCACTGGCCCAGACGAGATTCCAGCCTTCAT
gi|1 : GACATTTCACAATCAACA--AGAACC-AGT-ACAGCATCTGAACCCGACCATATGTCTACCTTTGACAGCTTTAATACTAGTA--CAGTTTTCCAGA--CTTCATC---ACCGAAACCTAGTACTACCAACATTAGAAATCATCCAAAACCAGCTAAATTCAA---GAGCCTTA-GAATCTTGAATATCAACTGCCAGAGTATTCGCAGGAAAGGGAAGCTGCTGGAA----GCCATTATAGACGACACAGAC----CCAGACATCATCATCGGCACTGAGACGTGGCT---AGACCCAGACATCAGATCTACAGAATTACT---ACCCC-CCAAGCTGGAGTTTGACATCTTCCGTCGTGATCGACCAAACAGCCCCCATGGCGGCGTTCTTATCGCATCCAAGAAAC-ACCTCCAACTCGGAAACATCATTACAAGCAAACACAATGAGCTGATCAGTGCCTCGTTCACCG-CAAA-----CAAGAAGAAAATTGCCATTGCAGCCTTCTACAGACCACCCAACAAAGTTGACGAAGTTTACCTATCATCT-GTTAAAGAAGACTTCCTC---ACTCTAAGG--AAACAGGCCAAGAAGGGCATCTTAATTATAGCTGGAGACTTCAATCTCCCTGACATAGACTGGA-AAGACCAAACCATAACTGGAAA------CCA---ATACCCGTCTA-GAGTCAACCAGTCATTCCTGGACATGGTATCA--GACAACAGTTTTGAACAAATCGTCAACTTCCCCACAAGAAAACAGAACACATTAGACATCATCCTAACAACTCATCCCAGCTTCAAACAACGATGCAAGCCCATGCCTTCTATTGG--T-AACAGCGACCATGATATTGTCCTGTTCGATAC----TA-CAATCACTGCGACACGTCCAAAACCACCAAGAAGAAAAATTCTCCTGTGGAAGAAAGCAGACATCCAAGGCATCAGGGACGACTTATCCGACCTATCGAGTATAACCAACCTGAATGACCCCTCCATAGAAGACTCTTGGGCTAGACTAAAGTCAAAAATACAAACTACCATTGAAAAGCGAGTCCCTTCGAAAATGACA-ACATCTAGAAATACTCACCCATGGATGAATACCGAGAT---CAAGA-GATTAATTCGTAGAAAACAACGAGCACATAAGAAAGCGAGGCATTCC---AA-TC--AGAAACGGGACCTTGACAGG-----TATAAGC--GCCTACAGAAAG--AAGTA---CAATACCAGATACGAAAGGCC--A--ACA----AGAAGTACT-TAGTGGACACG--GTG--AGT-CAGGACTTCAA--AGA--CGA-CTCTAAGAAGTTCTGGGCCTTCGTCAAAA-GT--AAA-GGACA--GGA-AGC-CACTGGTGT-T--GCGCCACTAAA-AAACAA-GG-ATGGTTACCTC-CAAAGCAACAAT--GAAGCT-----AGAGCTAACATTCTCAACGAGCAATT--T--GTC--TCTGCCTTCACC-CGTGAAA-------ACA-----CCACCTACATC-----CCAGACA-TGGGTCAGAGTGAAATACCATCAATGTCA--AACATTACAGTCGACTGGAAAGGGGTCCACAAATTGCTGATG--AATCTCAAGACCAAGAAAGCCACTGGCCCAGACGAGATTCCAGCCTTCAT
gi|10 : atctcaATAAACAGGACTGCAGAAAG--AAGTG---CAACACCAAATATGGAAGGTC--A--ACA----AGAAATACC-TTGGGGACACA--GTG--AGC-CAAAACTTCAA--GGA--CAA-CTCC-ATAAGTTTTGGGATTTCATCAGAA-TC--AAA-TGACC--GGA-AGA-TACTGGTAT-T--GCA---------------------GGTTTGCTT-CAGAGCGATAAT--GCAGCC-----AGAACAAACAATCTAAACGTGCAATT--T--GTA--TCTGCATTTACC-CATGAGA-------A-----------------T-----TCAGACA-TGGGACAGAGCGACCTATCACCAATACCA--AGCATTAGTGTTGACTGGTAGGGTGTACACAAGTTGCTGCTG--AGTCTCAATACTGAAAATGCCACTACCCAAGATTAGATTTTAGCC
gi|11 : GACGTG--GTA--TGCACAT-ACTTGAAGCAGA----A-CTCCAAACGCTTCTATGCTTACGTGAAAA-GC--AAA-CGCCA--AGA-ATC-TGAGGGGGTATCAGCTCTACTCAA----CAA-GG-AAGGCTTCCTA-CAGAGCAATAGC--AAACAG-----AAAGCAAATATCCTCAACGACCAGTT--TCAGTCAGTCTAC
gi|12 : cccatttgagagccaagaagtctggtagacagagggactgggacaaatataacgaacttcaagttgaggtccaaaaagacactagatcaactgaacgtAAAATGTTTTGGAACTACATTAAA---T--CAA-GGAGAAGGGATAGCATG--GGTGT-C--GCCTCACTGAATAAAGAA-AGCATTGCAATCTG-CGATGCC-CAATT-GAA----------AGCAAACATACTCAACGACCAATT--T--TTC--GCAGTATTCACT-AATGAAGATTTGTCACA-----CCGACCATATCTCCCTCCAAGCACCACGTC---------TTCCATCAATCCCATCACCGTGACAGTC------AAAGGTGTGCAAAAACTGCTCCAG--AACTTCAAac
gi|13 : ccgACACG--ATGGCAG---ACGA--TCAG--AGAAGCAA-CCCTAAACGGTTCTACAGCTTCATCAA---GTCCAAACGGA-A--GGG-TGC-TTCTGGTGT-A--GTTCCTCTTAT-AAATAATGG-A-----ACATCACATAATGACAGTTTGAAG-------AAAGCTAACATCCTCAACGATCAGTTAAC--ATC---CTGTTTTTACTACG-GAAA-------A
gi|2 : cttatgtaggcaACATTAGAAATCATCCAAAACCAGCTAAATTCAA---GAGCCTTA-GAATCTTGAATATCAACTGCCAGAGTATTCGCAGGAAAGGGAAGCTGCTGGAA----GCCATTATAGACGACACAGAC----CCAGACATCATCATCGGCACTGAGACGTGGCT---AGACCCAGACATCAGATCTACAGAATTACT---ACCCCCCCA-GCTGGAGTTTGACATCTTCCGTCGTGATCGACCAAACAGCCCCCATGGCGGCGTTCTTATCGCATCCAGGAAAC-ACCTCCAACTCGGAAACATCATTACAAGCAAACACAATGAGCTGATCAGTGCCTCGTTCACCG-CAAA-----CAAGAAGAAAATTGCCATTGCAGCCTTCTACAGACCACCCAACAAAGTTGACGAAGTTTACCTATCATCT-GTTAAAGAAGACTTCCTC---ACTCTAAGG--AAACAGGCCAAGAAGGGCATCTTAATTATAGCTGGAGACTTCAATCTCCCTGACATAGACTGGA-AAGACCAAACCATAACTGGAAA------CCA---ATACCCGTCTA-GAGTCAACCAATCATTCCTGGACATGGTATCA--GACAACAGTTTTGAACAAATCGTCAACTTCCCCACAAGAAAACAGAACACATTAGACATCATCCTAACAACTCATCCCAGCTTCAAACAACGATGCAAGCCCATGCCTTCTATTGG--T-AACAGCGACCACGATATTGTCCTGTTCGATAC----TA-CAATCACTGCGACACGTCCAAAACCACCAAGAAGAAAGATTCTCCTGTGGAAGAAAGCAGACATCAAAGGCATCAGGGACGACTTATCCGACCTATCGAGTATAACCAACCTGAATGACCCCTCCATAGAAGACTCTTGGGCTAGACTAAAGTCAAAAATACAAACTACCATTGAAAAGCGAGTCCCTTCGAAAATGACA-ACATCTAGAAATACACACCCATGGATGAATACCGAGAT---CAAGA-GATTAATTCGTAGAAAACAACGAGCATATAAGAAAGCGAGGCATTCC---AA-TC--AGAAACGGGACCTTGACAGG-----TATAAGC--GCCTACAGAAAG--AAGTA---CAATACCAGATACGAAAGGCC--A--ACA----AGAAGTACT-TAGTGGACACG--GTG--AGT-CACGACTTCAA--AGA--CGA-CTCTAAGAAGTTCTGGACCTTCGTCAAAA-GT--AAA-GGACA--GGA-AGC-CACTGGTGT-T--GCGCCACTAAA-AAACAA-GG-ATGGTTACCTC-CAAAGCAACAAT--GAAGCT-----AGAGCTAACATTCTCAACGAGCAATT--T--GTC--TCTGCCTTCACC-CGTGAAA-------ACA-----CCACCTACATC-----CCAGACA-TGGGTCAGAGTGAAATACCATCAATGTCA--AACATTACAGTCGACTGGAAAGGGGTCCACAAATTGCTGATG--AATCTCAAGACCAAGAAAGCCACTGGCCCAGACGAGATTCCAGCCTTCATa
gi|3 : GACATTTCAAACTCTACATCAGAATCGAGTCACAGC-TTTA----CAAAC-----TCAACTTTT---AGCT-------TGGTAGGCAGC---CCAGAAGCTTCATCCTCGCCGAAACCTAA-GCT-CCAAT-TTGGTA-----CCAAA-----CCAAAGACAAGGCGAGCACTACGAATATTGACCGTTAACTTCCAGAGTGTACGCAAG-AAGGGAA------GGAATATCGATGTTTTAGTTGAAACA-ACAAGGCCAGACATCATACTAGGAACAGAAACCTGGCTGTCAGAT---GACATCGCATCTCCATACTT-CTTCGATCCG-TC--GCTTGGTTTTAAAGTTTACCGTCGAGATAGGCCGAATGTACCCCATGGCGGAGTGCTTCTAGCA-GTAAAAGACGATATTAAAGTGTTAGATGTTGGGACACACAAGCAACTTGAACTTATC----TCTGGT--ACCATCAAAATAGGCAAGAAGAGAATGGTCCTCACTTCATACTACCGTCCTCCAGATAAAGTTGATGAAAGTTATCT-TGAAATGGTCAGCGCCGAATTCA-CAAGACTC-AAGAATAAATA---CAAGAAGGCTATATTCATCATTGGAGGAGACTTCAACATTCCAGACGTTGATTGGACAAGA--AA--CACAATTTCAAAGGCACCTCATATATACCC-TCAACGTGTGAGCCAGGCATTCCTTGATAT--TGTCATGGATATGAGCCTTGAACAACTAGTAGATTTCCCAACTAGACTACAGAACACGCTTGATCTTGTTTTCACAAGCCACCCAAGTTTCAAGATACGATGCAAACCATTACCACCAATAGGACTAAAGAGTGACCATGTCATTGTTCTCCTAGACACAGCTCATCAACCCCAACGAC---TCC--GACTTCCTCGTAGAAAGATATATTTATGGAAGAAGGCCAACATAGATGGCATCA
gi|3 : tacccctTCCCTACTAAAATGTCCTGCA-CTCGACAGACACACCCTTGGGTCACCACCAAGCTGCGTAGGATGATGA----GAAGGAAGCAGAGAGCCCACTGGAGGGCCAGGAAGTCTGGGAACTCTAAGACATGGGA-----A-AGA-----TACAAGA--TATTACAAACAG--CAGT---------CCAGA---AAGAGACC--AGGACAGCTGAGAAGTCCTACATTCAAGACGTCGTT--AGC-GATGA-TCTGA--GGA--AGAGCCCCAAGCGTTTCTGGTCATATATAAAGA-GT--AAG-AGGCA--AGA-GAC-AGAAGGTGT-A--TCTCCCCTCAT-CAATAA-GG-ACAGATTCCTT-CAGAGTGA-------AAGCTCAAGAAAAGCGGACATCTTCAATGACCAATT--C--CAG--TCAGTCTATACC-AAAGAAG-------ACA-----CTACAAGTATT-----CCAGACA-AGGaacatcatatgacgcagtacagtcagacgtttaccgacacaaccttccagtctattgaatatatgtggacatcattcaaggcagtcatcgcatcatctttagaacagtatatccctactaaaatgtcctgcactcgacagacacacccttgggtcaccaccaagctgcgtaggatgatgagaaggaagcagagagcccactggagggccaggaagtctgggaactctaagacatgggaaagatacaagatattacaaacagcagtccagaaagagaccaggacagctgagaagtcctacattcaagacgtcgttagcgatgatctgaggaagagccccaagcgtttctggtcatatataaagagtaagaggcaagagacagaaggtgtatctcccctcatcaataaggacagattccttcagagtgaaagctcaagaaaagcggacatcttcaatgaccaattccagtcagtctataccaaagaagacactacaagtattccagacaagg
gi|4 : tacccctgacatttcaaactctacatcagaatcgagtcacagctttacaaactcaacttttagcttggtaggcagcccagaagcttcatcctcgccgaaacctaagctccaatttggtaccaaaccaaagacaaggcgagcactacgaatattgaccgttaacttccagagtgtacgcaagaagggaaggaatatcgatgttttagttgaaacaacaaggccagacatcatactaggaacagaaacctggctgtcagatgacatcgcatctccatacttcttcgatccgtcgcttggttttaaagtttaccgtcgagataggccgaatgtaccccatggcggagtgcttctagcagtaaaagacgatattaaagtgttagatgttgggacacacaagcaacttgaacttatctctggtaccatcaaaataggcaagaagagaatggtcctcacttcatactaccgtcctccagataaagttgatgaaagttatcttgaaatggtcagcgccgaattcacaagactcaagaataaatacaagaaggctatattcatcattggaggagacttcaacattccagacgttgattggacaagaaacacaatttcaaaggcacctcatatataccctcaacgtgtgagccaggcattccttgatattgtcatggatatgagccttgaacaactagtagatttcccaactagactacagaacacgcttgatcttgttttcacaagccacccaagtttcaagatacgatgcaaaccattaccaccaataggactaaagagtgaccatgtcattgttctcctagacacagctcatcaaccccaacgactccgacttcctcgtagaaagatatatttatggaagaaggccaacatagatggcatcaaacatcatatgacgcagtacagtcagacgtttaccgacacaaccttccagtctattgaatatatgtggacatcattcaaggcagtcatcgcatcatctttagaacagtataCAAGAAGGGCATCTTAATTATAGCTGGAGACTTCAATCTCCCTGACATAGACTGGA-AAGACCAAACCATAACTGGAAA------CCA---ATACCCGTTTA-GAGTCAACCAATCATTCCTGGACATGGTAGCA--GATAACAGTTTTGAACAAATCGTCAACTTCCCCACAAGAAAACAGAACACATTAGACATCATCCTAACTACTCATCCCAGCTTCAATCAACGATGCAAACCCATGCCTTCTATTGG--T-AACAGCGACCACGATATTGTCCTGTTCGATAC----TA-CAATCACTGCGACACGTCCAAAACCACCAAGAAGAAAGATTCTCCTGTGGAAGAAAGCAGACATCCAAGGCATCAGGGACGACTTATCCGACCTATCGGGTATAACCAACCTGAATGACCCCTCAATAGAAGACTCTTGGGCTACACTAAAGTCAAAAATACAAACTACCATTGAAAAGCGAGTCCCTTCGAAAATGACA-ACATCTAGAAATACACACCCATGGATGAATACTGAGAT---CAAGA-GACTAATTCGTAGAAAACAACGAGCACATAAGAAAGCGAGGCATTCC---AA-TC--AGAAACGGGACCTTGACAG
gi|4 : AGC--ACATA-AGAAAGCGAGGCATTCCAAT--CAGAAACGG--GACCTTG--ACA-----GAAGTACT-TAGTGGACACG--GTG--AGT-CATGACTTCAA--AGA--CGA-CTCTAAGAAGTTCTGGGCCTTCGTCAAAAAGT--AAA-GGACA--GGA-AGC-CACTGGTGT-T--GCGCCACTAAA-AAATAA-GG-ATGGTTACCTC-CAAAGCAACAAC--GAAGCT-----AGAGCTAACATTCTCAACGAGCAATT--T--GTC--TCTGCCTTCACC-CGTGAAA-------ACA-----CCACCTACATC-----CCAGACA-TGGGTCAGAGTGAAATACCATCAATGTCA--AACATTACAGTCGACTGGAAAGGGGTCCACAAATTGCTGATG--AATCTCAAGACCAAGAAAGCCACTGGCCCAGACGAGATTCCAGCCTTCATaagtacttagtggacacggtgagtcatgacttcaaagacgactctaagaagttctgggccttcgtcaaaaagtaaaggacaggaagccactggtgttgcgccactaaaaaataaggatggttacctccaaagcaacaacgaagctagagctaacattctcaacgagcaatttgtctctgccttcacccgtgaaaacaccacctacatcccagacatgggtcagagtgaaataccatcaatgtcaaacattacagtcgactggaaaggggtccacaaattgctgatgaatctcaagaccaagaaagccactggcccagacgagattccagccttcatc
gi|5 : caagaagggcatcttaattatagctggagacttcaatctccctgacatagactggaaagaccaaaccataactggaaaccaatacccgtttagagtcaaccaatcattcctggacatggtagcagataacagttttgaacaaatcgtcaacttccccacaagaaaacagaacacattagacatcatcctaactactcatcccagcttcaatcaacgatgcaaacccatgccttctattggtaacagcgaccacgatattgtcctgttcgatactacaatcactgcgacacgtccaaaaccaccaagaagaaagattctcctgtggaagaaagcagacatccaaggcatcagggacgacttatccgacctatcgggtataaccaacctgaatgacccctcaatagaagactcttgggctacactaaagtcaaaaatacaaactaccattgaaaagcgagtcccttcgaaaatgacaacatctagaaatacacacccatggatgaatactgagatcaagagactaattcgtagaaaacaacgGATCCCTCCATAGAAGACTCTTGGGCTAGATTGAAGTCAAAAATACAAACTGCCATTGAAAAGCGAGTCCCTTCGAAAATGACA-ACATCTAGAAACACAAACCCATGGATGAATGCTGAGAT---CAAGA-GATTGATTCTTAGAAAGCAGCGAGCACATAAGAAAGCGAGGCATTCC---AA-TC--AGAAACAGGACCTTGACAGG-----TATAAGC--CTCTACAGAAAG--AGGTA---CAATACTAGATACGTAAGGCC--A--ACA----AGAAGTACT-TAGTGGACACG--GTG--AGT-CATGACTCCAA--AGA--CGA-CTCTAAGAAGTTCTGGGCCTTCATCAAAA-GC--AAA-GGACA--GGA-AGC-CACTGGTGT-T--GCACAACTGAA-AAATAA-GG-ATGGTTACCTC-CAAAGCGACAAT--GAAGCT-----CTAGCTAACATTCTCGATGAGCAATT--T--GTC--TCCGCCTTCACC-AGTGAAA-------ACACCAGTCCACCTATACT-----CCAGACA-TGGGTCAGAGTGAAATACCCTCAATGCCA--AACATTGCAGTCGACTAGAAAGGGGTCCACAAATTGCTGATG--AATCTCAAGACAAAGAAAGCAGCTGGCCCAAACGAGATTCCAGCCTTTAc
gi|6 : ACTCTTGGGCTAGATTGAAGTTATAAATACAAACTACCATTGAAAAGTGAGTCCCTTCAAAAATGACA-ACATCTAGAAACACAAACCCATGGATGAATACTGAGAT---CAAGA-GGTTGATTCATAGAAAGCAGCGAGCACATAAGAAAGTGAGGCATTCC---AA-TC--AGAAATGGGACCTTGACAGGACTGGTATAAGC--ATCTACAGAAAG--AAGTA---CAATACCAGATACGTAAGTCC--A--ACA----AGAAGTACT-TAGTAGACACG--GTG--AGC-CATGACTTCAA--AGA--CGA-CTCTAAGAAGTTCTAGGCCTTCGTCAAAA-GC--AAA-GGACA--GGA-AGC-CACTGGTGT-T--GCACCACTGAA-AAATAA-GG-ATGGTTACCTC-CAAAGCGACAAT--GAAGCT-----AGAGCTAACATTCTCAATGAGCAATT--T--GTC--TATACCTTCACC-CGTGAAA-------ACA-----CCAACTACATT-----CCAAACA-TGGGTCAGAGTGAAATACTCTCAGTGCCA--AACATTGCAGTTGACTGGAAAGGGGTCCACAAATTGCTGATGAAAATCTCAAGGCGAAGAAAGCCA--------------ATTCCAGCCTTCAT
gi|7 : TCCCTACTAAAATGTCCTGCA-CTCGACAGACACACCCTTGGGTCACCACCAAGCTGCGTAGGATGATGA----GAAGGAAGCAGAGAGCCCACTGGCGGGCCAGGAAGTCTGGGAACTCTAAGACATGGGA-----A-AGA-----TACAAGA--TATTACAAACAG--CAGT---------CCAGA---AAGAGACCAGA--ACAGCTGAGAAGTCCTACATTCAAGACGTCGTT--AGC-GATGA-TCTGA--GGA--AGAGCCCCAAGCGTTTCTGGTCATATATAAAGA-GT--AAG-AGGCA--AGA-GAC-AGAAGGTGT-A--TCTCCCCTCAT-CAATAA-GG-ACGGATTCCTT-CAGAGTGA-------AAGCTCAAGAAAAGCGGACATCCTCAATGACCAATT--C--CAG--TCAGTCTATACC-AAAGAAG-------ACA-----CTACc
gi|8 : atatttatggaagaaggccaacatagatggcatcaagcatcatatgacgcagtacagtcagacgtttaccgacacaaccttccagtctattgaatgtatgtgggcatcattcaaggcagccatcgcatcttctttagaacagtataCC---AA-TC--AGAAACGGGACCTTGACAGG-----TATAAGC--GCCTACAGAAAG--AAGTA---CATTACCAGATACGAAAGGCC--A--ACA----AGAAGTACT-TAGTGGACACG--GTG--AGT-CATGACTTCAA--AGA--TGA-CTCTAAGAAGTTCTGGGCCTTCGTCAAAA-GT--AAA-GGACA--GGA-AGC-CACTGGTGT-T--GCGCCACTAAA-AAACAA-GG-ATGGTTACCTC-CAAAGCAACAAT--GAAGCT-----AGAGCTAACATTCTCAACGAGCAATT--T--GTC--TCTGCCTTCACC-CGTGAAA-------ACA-----CCACCTACATC-----CCAGACA-TGGGTCAGAGTGAAATACCATCAATGTCA--AACATTACAGTCGACTGGAAAGGGGTCCACAAATTGCTGATG--AATCTCAAGACCAAGAAAGCCACTGGCCCAGACGAGATTCCAGCCTTCAaagt
gi|9 : CATCTTAATAATAGCTGGAGACTTCAACCTCCCTGACGAAGACTGGA-AAAACCTAACCATAACTGGAAA------CCA---ATACCTGTTTA-GAGTCAACCAATAATTCCTGGACATGGTATCA--GACAACAGTTTTAAACAAATCGTCAACTTCCCCACAAGAAAACAGAACACATTAGACATCATCCTAACAACTCATCCCAGCTACAAACAACGATGCAAGCCCATACCCTCTATTGG--T-AACAGCGACCACGATATTGTCCTGTTCGATAC----TA-AGATCACTGCGACACGTCCAAAACCACCAAGAAGAAAGATTCTCTTATGGAAGAATGCAGACATCCAAGGCATCAGGGGCTACTTATCTGACCAATCAAGTATAATCAAACTGAATAATCCTTCCATAG
blockSeqs : A C T TC G C . . A . A . . GG . AG CTC . . A A A GGC C A G TATC G AAGG GTC C A TCG C A T G A T T ATAGG A G T AAG T AT G C GGCACC TAT C TG AC A AGCT T T T T GCG T A GGG C TA C C ACTGG AGGA CG ATTC A T TT GG GCTG A TC GC CA C GC AGC G A CC C AG T TAC ATCA A C TA T C A A T TT CAAGA A AA CA AG A ATTTGTC CCAGT TCCCT C TC AA
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T T G GCG T A GGG C TA C C . GC . G A T AG . GCTG A TC . C C . C G . . . . . TGA T T G A . . T . T T CAAGA A . . . . . . . . . .
blockSeqs : . . . . . . . . . . T T . . A . . . C C . TA . A A A . . . . . . T C . C . . . . . . ATG C C T A . . T . C . . A . . . . . . . . . .
blockSeqs : . . . . . . . . . . T C . . A . . . C C . AC . A A T . . . . . . C C . A . . . . . . TTC A T A C . . C . C . . T . . . . . . . . . .
blockSeqs : . . C . . . . . . C C . CT . A A T . . . . . . T C . C . . . . . . CAC T G C A . . T . C . . T . . . . . . . . . .
blockSeqs : . . G . . . . . . . . . AT . A . T . . . . . . T C . C . . . . . . AGA A T A A . . T . C . . G . . . . . . . . . .
blockSeqs : . . . . . TA . . . . . . . . . . C C . C . . . . . . CAC T G G A . . T . C . . T . . . . . . . . . .
blockSeqs : GC . . . . . . . . . . C . . A . . . . . . CAC T A G C . . C . C . . T . . . . . . . .
blockSeqs : . . T . . T . . . . . . CAC T A C A . . T . C . . T . . . . . .
blockSeqs : . . . . . . . . . . . . AGA A T A . . . . . . . . G . . . . .
blockSeqs : . . . . . CAC T G . . . . . . . . . T . . .
blockSeqCons :
originalCons : NNNNNNGACATTTCANANTCNACATCAGAACCGAGTCACAGCATCTGAACCCGANCATATGTCNACCTTTGACAGCTTTAATACTGGTAGGCAGCTTTCCAGAAGCTTCATCCTCGCCGAAACCTAGTGCTACCAACATTAGAAATCATCCAAAACCAGCTAAATTCAA---GAGCCTTA-GAATCTTGAATATCAACTGCCAGAGTATTCGCAGGAAAGGGAAGCTGCTGGAA----GCCGTTATAGACGACACAGAC----CCAGACATCATCATCGGCACTGAGACGTGGCT---AGACCCAGACATCGGATCTACAGAATTACT---ACCCC-CCA-GCTGGAGTTTGACGTCTTCCGTCGTGATCGACCGAACGGCCCCCATGGCGGCGTTCTTATCGCATCCAAGAAAC-ACCTCCAACTCGGAAACGTCGTTACAAGCAAACACAATGAGCTGATCAGTGCCTCGTTCACCG-CAAA-----CAAGAAGAAAATTGCCATCGCAGCCTTCTACAGACCACCCGACAAAGTTGACGAAGTTTACCTATCATCT-GTTAAAGAAGACTTCCTC---ACTCTAAGG--AAACAGGCCAAGAAGGGCATCTTAATTATAGCTGGAGACTTCAATCTCCCTGACGTAGACTGGA-AAGACCAAACCATAACTGGAAA------CCA---ATACCCGTCTA-GAGTCAACCAATCATTCCTGGACATGGTATCA--GACAACAGTTTTGAACAAATCGTCAACTTCCCCACAAGAAAACAGAACACATTAGACATCATCCTAACAACTCATCCCAGCTTCAAACAACGATGCAAGCCCATGCCTTCTATTGG--T-AACAGCGACCACGATATTGTCCTGTTCGATAC----TA-CAATCACTGCGACACGTCCAAAACCACCAAGAAGAAAGATTCTCCTGTGGAAGAAAGCAGACATCCAAGGCATCAGGGACGACTTATCCGACCTATCGAGTATAACCAACCTGAATGACCCCTCCATAGAAGACTCTTGGGCTAGACTAAAGTCAAAAATACAAACTACCATTGAAAAGCGAGTCCCTTCGAAAATGACA-ACATCTAGAAANACACACCCATGGATGAATACCGAGAT---CAAGA-GATTAATTCGTAGAAAGCAGCGAGCACATAAGAAAGCGAGGCATTCC---AA-TC--AGAAACGGGACCTTGACAGG-----TATAAGC--GCCTACAGAAAG--AAGTA---CAATACCAGATACGAAAGGCC--A--ACA----AGAAGTACT-TAGTGGACACG--GTG--AGC-CATGACTTCAA--AGA--CGA-CTCTAAGAAGTTCTGGGCCTTCGTCAAAA-GT--AAA-GGACA--GGA-AGC-CGCTGGTGT-T--GCGCCACTNAA-AAATAA-GG-ATGGTTACCTC-CAAAGCGACAAT--GAAGCT-----AGAGCTAACATTCTCAACGAGCAATT--T--GTC--TCTGCCTTCACC-CGTGAAA-------ACA-----CCACCTACATC-----CCAGACA-TGGGTCAGAGTGAAATACCATCAATGCCA--AACATTACAGTCGACTGGAAAGGGGTCCACAAATTGCTGATG--AATCTCAAGACCAAGAAAGCCACTGGCCCAGACGAGATTCCAGCCTTCAT
finalCons : NNNNNNGACATTTCANANTCNACATCAGAACCGAGTCACAGCATCTGAACCCGANCATATGTCNACCTTTGACAGCTTTAATACTGGTAGGCAGCTTTCCAGAAGCTTCATCCTCGCCGAAACCTAGTGCTACCAACATTAGAAATCATCCAAAACCAGCTAAATTCAA---GAGCCTTA-GAATCTTGAATATCAACTGCCAGAGTATTCGCAGGAAAGGGAAGCTGCTGGAA----GCCGTTATAGACGACACAGAC----CCAGACATCATCATCGGCACTGAGACGTGGCT---AGACCCAGACATCGGATCTACAGAATTACT---ACCCC-CCA-GCTGGAGTTTGACGTCTTCCGTCGTGATCGACCGAACGGCCCCCATGGCGGCGTTCTTATCGCATCCAAGAAAC-ACCTCCAACTCGGAAACGTCGTTACAAGCAAACACAATGAGCTGATCAGTGCCTCGTTCACCG-CAAA-----CAAGAAGAAAATTGCCATCGCAGCCTTCTACAGACCACCCGACAAAGTTGACGAAGTTTACCTATCATCT-GTTAAAGAAGACTTCCTC---ACTCTAAGG--AAACAGGCCAAGAAGGGCATCTTAATTATAGCTGGAGACTTCAATCTCCCTGACGTAGACTGGA-AAGACCAAACCATAACTGGAAA------CCA---ATACCCGTCTA-GAGTCAACCAATCATTCCTGGACATGGTATCA--GACAACAGTTTTGAACAAATCGTCAACTTCCCCACAAGAAAACAGAACACATTAGACATCATCCTAACAACTCATCCCAGCTTCAAACAACGATGCAAGCCCATGCCTTCTATTGG--T-AACAGCGACCACGATATTGTCCTGTTCGATAC----TA-CAATCACTGCGACACGTCCAAAACCACCAAGAAGAAAGATTCTCCTGTGGAAGAAAGCAGACATCCAAGGCATCAGGGACGACTTATCCGACCTATCGAGTATAACCAACCTGAATGACCCCTCCATAGAAGACTCTTGGGCTAGACTAAAGTCAAAAATACAAACTACCATTGAAAAGCGAGTCCCTTCGAAAATGACA-ACATCTAGAAANACACACCCATGGATGAATACCGAGAT---CAAGA-GATTAATTCGTAGAAAGCAGCGAGCACATAAGAAAGCGAGGCATTCC---AA-TC--AGAAACGGGACCTTGACAGG-----TATAAGC--GCCTACAGAAAG--AAGTA---CAATACCAGATACGAAAGGCC--A--ACA----AGAAGTACT-TAGTGGACACG--GTG--AGC-CATGACTTCAA--AGA--CGA-CTCTAAGAAGTTCTGGGCCTTCGTCAAAA-GT--AAA-GGACA--GGA-AGC-CGCTGGTGT-T--GCGCCACTNAA-AAATAA-GG-ATGGTTACCTC-CAAAGCGACAAT--GAAGCT-----AGAGCTAACATTCTCAACGAGCAATT--T--GTC--TCTGCCTTCACC-CGTGAAA-------ACA-----CCACCTACATC-----CCAGACA-TGGGTCAGAGTGAAATACCATCAATGCCA--AACATTACAGTCGACTGGAAAGGGGTCCACAAATTGCTGATG--AATCTCAAGACCAAGAAAGCCACTGGCCCAGACGAGATTCCAGCCTTCAT
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): GACATCCTCAATGACCAATTCCAGTCAGTCTATATCAAAGAAGACACTATAAGTATTCCAGACAAGGGACCAAGCCCTCACCCAACTATGATGGGACTCAAGATCCGCCCCACCGGAGTCGCAAAGCTTCTTGGTAACCTTAAACCA
Unaligned ( gi|15 ): ATAGTCACTAATGAGTGAGATTCTGTCACACTGACCATCTCTCTCTCTTAGCACCAAGCCCTCCGTGAACCCCATCACCGGGACAGTCAAGGGAGTGCAGAACTTCTCCACAACCTG
Unaligned ( gi|16 ): ACTGATCACATACTCTCCCTCCAAACATAATGCTCTCCATAAACCCCATCACCACGAGAGTCAAAAGAGTGCAGAAACTACTCCAGAACCT
Unaligned ( gi|17 ): CCTCACCCAACTATGATGGGACTCAAGATCCGCCCCAACGGAGTCGCAAAGCTTCTTGGTAACCTTAAACCA
Unaligned ( gi|18 ): ATGATCAGAGAAGCAACACCAAAAGGATCATCAAATCCAAACAGCTTTTGGTGTAGCTCCTCTAACAAACA
Alignments
lowQualScore : 11 1 1 1 2222 22222 222 3333333 11 222 11 222 1 1 222 1 2222 2222 222 222 1 22 1 1 33333 1 222 11 222222 111 11 11 1111 1 222 1 111 1 11 11111 1111 11 1111 11 11111 1111111 11111 11111
lowQualScore : 1 1 1 88 5 5 5 3333 1 77777 1 000 3333333 77 111 88 000 5 5 7 7 7 333 3 7 6 8888 0 6 8888 333 6 0 7 333 3 00 0 0 0 7 3 0 0 7 7 3 33333 0 0 7 3 7 333 7 88 6 8 0 333333 444 8 11 11 8 7777 8 0 0 1 5 1 000 1 5 777 0 33 2 2 44444 9999 66 1111 1 4 0 22 66 8888 8 00 55 55 3 55 555 7 3 44 3 44 3 4444 6666 4 2 44 3 3 1 3 1 77 66666 1 0 44 44 44 3 0 1111111 00000 11111 4 66 66
lowQualScore : . . . .. . . . .... . ..... . ... ....... .. ... .. ... . . . . . ... . . . .... . . .... ... . . . ... . .. . . . . . . . . . . ..... . . . . . ... . .. . . . ...... ... . .. .. . .... . . . . . . ... . . ... . .. . . ..... .... .. .... . . . .. .. .... . .. .. .. . .. ... . . .. . .. . .... .... . . .. . . . . . .. ..... . . .. .. .. . . ....... ..... ..... . .. ..
lowQualScore : 0 0 0 00 0 0 5 5555 0 00000 0 555 0000000 55 555 00 555 5 5 3 3 3 333 3 3 7 3333 7 7 3333 333 7 7 3 333 3 77 7 7 7 3 3 7 7 3 3 3 33333 7 7 3 3 3 333 3 33 7 0 8 000000 000 0 00 00 0 0000 0 8 8 4 0 0 000 4 0 555 0 88 5 5 33333 9999 11 3333 8 8 1 22 11 9999 9 00 00 55 6 00 555 3 3 66 3 66 3 7777 7777 4 2 44 3 3 8 3 0 99 77777 5 4 66 66 66 6 2 8888888 00000 11111 4 99 99
consensus : NNNNNNGACATTTCANANTCNACATCAGAACCGAGTCACAGCATCTGAACCCGANCATATGTCNACCTTTGACAGCTTTAATACTGGTAGGCAGCTTTCCAGAAGCTTCATCCTCGCCGAAACCTAGTGCTACCAACATTAGAAATCATCCAAAACCAGCTAAATTCAA---GAGCCTTA-GAATCTTGAATATCAACTGCCAGAGTATTCGCAGGAAAGGGAAGCTGCTGGAA----GCCGTTATAGACGACACAGAC----CCAGACATCATCATCGGCACTGAGACGTGGCT---AGACCCAGACATCGGATCTACAGAATTACT---ACCCC-CCA-GCTGGAGTTTGACGTCTTCCGTCGTGATCGACCGAACGGCCCCCATGGCGGCGTTCTTATCGCATCCAAGAAAC-ACCTCCAACTCGGAAACGTCGTTACAAGCAAACACAATGAGCTGATCAGTGCCTCGTTCACCG-CAAA-----CAAGAAGAAAATTGCCATCGCAGCCTTCTACAGACCACCCGACAAAGTTGACGAAGTTTACCTATCATCT-GTTAAAGAAGACTTCCTC---ACTCTAAGG--AAACAGGCCAAGAAGGGCATCTTAATTATAGCTGGAGACTTCAATCTCCCTGACGTAGACTGGA-AAGACCAAACCATAACTGGAAA------CCA---ATACCCGTCTA-GAGTCAACCAATCATTCCTGGACATGGTATCA--GACAACAGTTTTGAACAAATCGTCAACTTCCCCACAAGAAAACAGAACACATTAGACATCATCCTAACAACTCATCCCAGCTTCAAACAACGATGCAAGCCCATGCCTTCTATTGG--T-AACAGCGACCACGATATTGTCCTGTTCGATAC----TA-CAATCACTGCGACACGTCCAAAACCACCAAGAAGAAAGATTCTCCTGTGGAAGAAAGCAGACATCCAAGGCATCAGGGACGACTTATCCGACCTATCGAGTATAACCAACCTGAATGACCCCTCCATAGAAGACTCTTGGGCTAGACTAAAGTCAAAAATACAAACTACCATTGAAAAGCGAGTCCCTTCGAAAATGACA-ACATCTAGAAANACACACCCATGGATGAATACCGAGAT---CAAGA-GATTAATTCGTAGAAAGCAGCGAGCACATAAGAAAGCGAGGCATTCC---AA-TC--AGAAACGGGACCTTGACAGG-----TATAAGC--GCCTACAGAAAG--AAGTA---CAATACCAGATACGAAAGGCC--A--ACA----AGAAGTACT-TAGTGGACACG--GTG--AGC-CATGACTTCAA--AGA--CGA-CTCTAAGAAGTTCTGGGCCTTCGTCAAAA-GT--AAA-GGACA--GGA-AGC-CGCTGGTGT-T--GCGCCACTNAA-AAATAA-GG-ATGGTTACCTC-CAAAGCGACAAT--GAAGCT-----AGAGCTAACATTCTCAACGAGCAATT--T--GTC--TCTGCCTTCACC-CGTGAAA-------ACA-----CCACCTACATC-----CCAGACA-TGGGTCAGAGTGAAATACCATCAATGCCA--AACATTACAGTCGACTGGAAAGGGGTCCACAAATTGCTGATG--AATCTCAAGACCAAGAAAGCCACTGGCCCAGACGAGATTCCAGCCTTCAT
Reference ( family-1 ) : NNNNNNGACATTTCANANTCNACATCAGAACCGAGTCACAGCATCTGAACCCGANCATATGTCNACCTTTGACAGCTTTAATACTGGTAGGCAGCTTTCCAGAAGCTTCATCCTCGCCGAAACCTAGTGCTACCAACATTAGAAATCATCCAAAACCAGCTAAATTCAA---GAGCCTTA-GAATCTTGAATATCAACTGCCAGAGTATTCGCAGGAAAGGGAAGCTGCTGGAA----GCCGTTATAGACGACACAGAC----CCAGACATCATCATCGGCACTGAGACGTGGCT---AGACCCAGACATCGGATCTACAGAATTACT---ACCCC-CCA-GCTGGAGTTTGACGTCTTCCGTCGTGATCGACCGAACGGCCCCCATGGCGGCGTTCTTATCGCATCCAAGAAAC-ACCTCCAACTCGGAAACGTCGTTACAAGCAAACACAATGAGCTGATCAGTGCCTCGTTCACCG-CAAA-----CAAGAAGAAAATTGCCATCGCAGCCTTCTACAGACCACCCGACAAAGTTGACGAAGTTTACCTATCATCT-GTTAAAGAAGACTTCCTC---ACTCTAAGG--AAACAGGCCAAGAAGGGCATCTTAATTATAGCTGGAGACTTCAATCTCCCTGACGTAGACTGGA-AAGACCAAACCATAACTGGAAA------CCA---ATACCCGTCTA-GAGTCAACCAATCATTCCTGGACATGGTATCA--GACAACAGTTTTGAACAAATCGTCAACTTCCCCACAAGAAAACAGAACACATTAGACATCATCCTAACAACTCATCCCAGCTTCAAACAACGATGCAAGCCCATGCCTTCTATTGG--T-AACAGCGACCACGATATTGTCCTGTTCGATAC----TA-CAATCACTGCGACACGTCCAAAACCACCAAGAAGAAAGATTCTCCTGTGGAAGAAAGCAGACATCCAAGGCATCAGGGACGACTTATCCGACCTATCGAGTATAACCAACCTGAATGACCCCTCCATAGAAGACTCTTGGGCTAGACTAAAGTCAAAAATACAAACTACCATTGAAAAGCGAGTCCCTTCGAAAATGACA-ACATCTAGAAANACACACCCATGGATGAATACCGAGAT---CAAGA-GATTAATTCGTAGAAAGCAGCGAGCACATAAGAAAGCGAGGCATTCC---AA-TC--AGAAACGGGACCTTGACAGG-----TATAAGC--GCCTACAGAAAG--AAGTA---CAATACCAGATACGAAAGGCC--A--ACA----AGAAGTACT-TAGTGGACACG--GTG--AGC-CATGACTTCAA--AGA--CGA-CTCTAAGAAGTTCTGGGCCTTCGTCAAAA-GT--AAA-GGACA--GGA-AGC-CGCTGGTGT-T--GCGCCACTNAA-AAATAA-GG-ATGGTTACCTC-CAAAGCGACAAT--GAAGCT-----AGAGCTAACATTCTCAACGAGCAATT--T--GTC--TCTGCCTTCACC-CGTGAAA-------ACA-----CCACCTACATC-----CCAGACA-TGGGTCAGAGTGAAATACCATCAATGCCA--AACATTACAGTCGACTGGAAAGGGGTCCACAAATTGCTGATG--AATCTCAAGACCAAGAAAGCCACTGGCCCAGACGAGATTCCAGCCTTCAT
gi|1 : GACATTTCACAATCAACA--AGAACC-AGT-ACAGCATCTGAACCCGACCATATGTCTACCTTTGACAGCTTTAATACTAGTA--CAGTTTTCCAGA--CTTCATC---ACCGAAACCTAGTACTACCAACATTAGAAATCATCCAAAACCAGCTAAATTCAA---GAGCCTTA-GAATCTTGAATATCAACTGCCAGAGTATTCGCAGGAAAGGGAAGCTGCTGGAA----GCCATTATAGACGACACAGAC----CCAGACATCATCATCGGCACTGAGACGTGGCT---AGACCCAGACATCAGATCTACAGAATTACT---ACCCC-CCAAGCTGGAGTTTGACATCTTCCGTCGTGATCGACCAAACAGCCCCCATGGCGGCGTTCTTATCGCATCCAAGAAAC-ACCTCCAACTCGGAAACATCATTACAAGCAAACACAATGAGCTGATCAGTGCCTCGTTCACCG-CAAA-----CAAGAAGAAAATTGCCATTGCAGCCTTCTACAGACCACCCAACAAAGTTGACGAAGTTTACCTATCATCT-GTTAAAGAAGACTTCCTC---ACTCTAAGG--AAACAGGCCAAGAAGGGCATCTTAATTATAGCTGGAGACTTCAATCTCCCTGACATAGACTGGA-AAGACCAAACCATAACTGGAAA------CCA---ATACCCGTCTA-GAGTCAACCAGTCATTCCTGGACATGGTATCA--GACAACAGTTTTGAACAAATCGTCAACTTCCCCACAAGAAAACAGAACACATTAGACATCATCCTAACAACTCATCCCAGCTTCAAACAACGATGCAAGCCCATGCCTTCTATTGG--T-AACAGCGACCATGATATTGTCCTGTTCGATAC----TA-CAATCACTGCGACACGTCCAAAACCACCAAGAAGAAAAATTCTCCTGTGGAAGAAAGCAGACATCCAAGGCATCAGGGACGACTTATCCGACCTATCGAGTATAACCAACCTGAATGACCCCTCCATAGAAGACTCTTGGGCTAGACTAAAGTCAAAAATACAAACTACCATTGAAAAGCGAGTCCCTTCGAAAATGACA-ACATCTAGAAATACTCACCCATGGATGAATACCGAGAT---CAAGA-GATTAATTCGTAGAAAACAACGAGCACATAAGAAAGCGAGGCATTCC---AA-TC--AGAAACGGGACCTTGACAGG-----TATAAGC--GCCTACAGAAAG--AAGTA---CAATACCAGATACGAAAGGCC--A--ACA----AGAAGTACT-TAGTGGACACG--GTG--AGT-CAGGACTTCAA--AGA--CGA-CTCTAAGAAGTTCTGGGCCTTCGTCAAAA-GT--AAA-GGACA--GGA-AGC-CACTGGTGT-T--GCGCCACTAAA-AAACAA-GG-ATGGTTACCTC-CAAAGCAACAAT--GAAGCT-----AGAGCTAACATTCTCAACGAGCAATT--T--GTC--TCTGCCTTCACC-CGTGAAA-------ACA-----CCACCTACATC-----CCAGACA-TGGGTCAGAGTGAAATACCATCAATGTCA--AACATTACAGTCGACTGGAAAGGGGTCCACAAATTGCTGATG--AATCTCAAGACCAAGAAAGCCACTGGCCCAGACGAGATTCCAGCCTTCAT
gi|10 : atctcaATAAACAGGACTGCAGAAAG--AAGTG---CAACACCAAATATGGAAGGTC--A--ACA----AGAAATACC-TTGGGGACACA--GTG--AGC-CAAAACTTCAA--GGA--CAA-CTCC-ATAAGTTTTGGGATTTCATCAGAA-TC--AAA-TGACC--GGA-AGA-TACTGGTAT-T--GCA---------------------GGTTTGCTT-CAGAGCGATAAT--GCAGCC-----AGAACAAACAATCTAAACGTGCAATT--T--GTA--TCTGCATTTACC-CATGAGA-------A-----------------T-----TCAGACA-TGGGACAGAGCGACCTATCACCAATACCA--AGCATTAGTGTTGACTGGTAGGGTGTACACAAGTTGCTGCTG--AGTCTCAATACTGAAAATGCCACTACCCAAGATTAGATTTTAGCC
gi|11 : GACGTG--GTA--TGCACAT-ACTTGAAGCAGA----A-CTCCAAACGCTTCTATGCTTACGTGAAAA-GC--AAA-CGCCA--AGA-ATC-TGAGGGGGTATCAGCTCTACTCAA----CAA-GG-AAGGCTTCCTA-CAGAGCAATAGC--AAACAG-----AAAGCAAATATCCTCAACGACCAGTT--TCAGTCAGTCTAC
gi|12 : cccatttgagagccaagaagtctggtagacagagggactgggacaaatataacgaacttcaagttgaggtccaaaaagacactagatcaactgaacgtAAAATGTTTTGGAACTACATTAAA---T--CAA-GGAGAAGGGATAGCATG--GGTGT-C--GCCTCACTGAATAAAGAA-AGCATTGCAATCTG-CGATGCC-CAATT-GAA----------AGCAAACATACTCAACGACCAATT--T--TTC--GCAGTATTCACT-AATGAAGATTTGTCACA-----CCGACCATATCTCCCTCCAAGCACCACGTC---------TTCCATCAATCCCATCACCGTGACAGTC------AAAGGTGTGCAAAAACTGCTCCAG--AACTTCAAac
gi|13 : ccgACACG--ATGGCAG---ACGA--TCAG--AGAAGCAA-CCCTAAACGGTTCTACAGCTTCATCAA---GTCCAAACGGA-A--GGG-TGC-TTCTGGTGT-A--GTTCCTCTTAT-AAATAATGG-A-----ACATCACATAATGACAGTTTGAAG-------AAAGCTAACATCCTCAACGATCAGTTAAC--ATC---CTGTTTTTACTACG-GAAA-------A
gi|2 : cttatgtaggcaACATTAGAAATCATCCAAAACCAGCTAAATTCAA---GAGCCTTA-GAATCTTGAATATCAACTGCCAGAGTATTCGCAGGAAAGGGAAGCTGCTGGAA----GCCATTATAGACGACACAGAC----CCAGACATCATCATCGGCACTGAGACGTGGCT---AGACCCAGACATCAGATCTACAGAATTACT---ACCCCCCCA-GCTGGAGTTTGACATCTTCCGTCGTGATCGACCAAACAGCCCCCATGGCGGCGTTCTTATCGCATCCAGGAAAC-ACCTCCAACTCGGAAACATCATTACAAGCAAACACAATGAGCTGATCAGTGCCTCGTTCACCG-CAAA-----CAAGAAGAAAATTGCCATTGCAGCCTTCTACAGACCACCCAACAAAGTTGACGAAGTTTACCTATCATCT-GTTAAAGAAGACTTCCTC---ACTCTAAGG--AAACAGGCCAAGAAGGGCATCTTAATTATAGCTGGAGACTTCAATCTCCCTGACATAGACTGGA-AAGACCAAACCATAACTGGAAA------CCA---ATACCCGTCTA-GAGTCAACCAATCATTCCTGGACATGGTATCA--GACAACAGTTTTGAACAAATCGTCAACTTCCCCACAAGAAAACAGAACACATTAGACATCATCCTAACAACTCATCCCAGCTTCAAACAACGATGCAAGCCCATGCCTTCTATTGG--T-AACAGCGACCACGATATTGTCCTGTTCGATAC----TA-CAATCACTGCGACACGTCCAAAACCACCAAGAAGAAAGATTCTCCTGTGGAAGAAAGCAGACATCAAAGGCATCAGGGACGACTTATCCGACCTATCGAGTATAACCAACCTGAATGACCCCTCCATAGAAGACTCTTGGGCTAGACTAAAGTCAAAAATACAAACTACCATTGAAAAGCGAGTCCCTTCGAAAATGACA-ACATCTAGAAATACACACCCATGGATGAATACCGAGAT---CAAGA-GATTAATTCGTAGAAAACAACGAGCATATAAGAAAGCGAGGCATTCC---AA-TC--AGAAACGGGACCTTGACAGG-----TATAAGC--GCCTACAGAAAG--AAGTA---CAATACCAGATACGAAAGGCC--A--ACA----AGAAGTACT-TAGTGGACACG--GTG--AGT-CACGACTTCAA--AGA--CGA-CTCTAAGAAGTTCTGGACCTTCGTCAAAA-GT--AAA-GGACA--GGA-AGC-CACTGGTGT-T--GCGCCACTAAA-AAACAA-GG-ATGGTTACCTC-CAAAGCAACAAT--GAAGCT-----AGAGCTAACATTCTCAACGAGCAATT--T--GTC--TCTGCCTTCACC-CGTGAAA-------ACA-----CCACCTACATC-----CCAGACA-TGGGTCAGAGTGAAATACCATCAATGTCA--AACATTACAGTCGACTGGAAAGGGGTCCACAAATTGCTGATG--AATCTCAAGACCAAGAAAGCCACTGGCCCAGACGAGATTCCAGCCTTCATa
gi|3 : GACATTTCAAACTCTACATCAGAATCGAGTCACAGC-TTTA----CAAAC-----TCAACTTTT---AGCT-------TGGTAGGCAGC---CCAGAAGCTTCATCCTCGCCGAAACCTAA-GCT-CCAAT-TTGGTA-----CCAAA-----CCAAAGACAAGGCGAGCACTACGAATATTGACCGTTAACTTCCAGAGTGTACGCAAG-AAGGGAA------GGAATATCGATGTTTTAGTTGAAACA-ACAAGGCCAGACATCATACTAGGAACAGAAACCTGGCTGTCAGAT---GACATCGCATCTCCATACTT-CTTCGATCCG-TC--GCTTGGTTTTAAAGTTTACCGTCGAGATAGGCCGAATGTACCCCATGGCGGAGTGCTTCTAGCA-GTAAAAGACGATATTAAAGTGTTAGATGTTGGGACACACAAGCAACTTGAACTTATC----TCTGGT--ACCATCAAAATAGGCAAGAAGAGAATGGTCCTCACTTCATACTACCGTCCTCCAGATAAAGTTGATGAAAGTTATCT-TGAAATGGTCAGCGCCGAATTCA-CAAGACTC-AAGAATAAATA---CAAGAAGGCTATATTCATCATTGGAGGAGACTTCAACATTCCAGACGTTGATTGGACAAGA--AA--CACAATTTCAAAGGCACCTCATATATACCC-TCAACGTGTGAGCCAGGCATTCCTTGATAT--TGTCATGGATATGAGCCTTGAACAACTAGTAGATTTCCCAACTAGACTACAGAACACGCTTGATCTTGTTTTCACAAGCCACCCAAGTTTCAAGATACGATGCAAACCATTACCACCAATAGGACTAAAGAGTGACCATGTCATTGTTCTCCTAGACACAGCTCATCAACCCCAACGAC---TCC--GACTTCCTCGTAGAAAGATATATTTATGGAAGAAGGCCAACATAGATGGCATCA
gi|3 : tacccctTCCCTACTAAAATGTCCTGCA-CTCGACAGACACACCCTTGGGTCACCACCAAGCTGCGTAGGATGATGA----GAAGGAAGCAGAGAGCCCACTGGAGGGCCAGGAAGTCTGGGAACTCTAAGACATGGGA-----A-AGA-----TACAAGA--TATTACAAACAG--CAGT---------CCAGA---AAGAGACC--AGGACAGCTGAGAAGTCCTACATTCAAGACGTCGTT--AGC-GATGA-TCTGA--GGA--AGAGCCCCAAGCGTTTCTGGTCATATATAAAGA-GT--AAG-AGGCA--AGA-GAC-AGAAGGTGT-A--TCTCCCCTCAT-CAATAA-GG-ACAGATTCCTT-CAGAGTGA-------AAGCTCAAGAAAAGCGGACATCTTCAATGACCAATT--C--CAG--TCAGTCTATACC-AAAGAAG-------ACA-----CTACAAGTATT-----CCAGACA-AGGaacatcatatgacgcagtacagtcagacgtttaccgacacaaccttccagtctattgaatatatgtggacatcattcaaggcagtcatcgcatcatctttagaacagtatatccctactaaaatgtcctgcactcgacagacacacccttgggtcaccaccaagctgcgtaggatgatgagaaggaagcagagagcccactggagggccaggaagtctgggaactctaagacatgggaaagatacaagatattacaaacagcagtccagaaagagaccaggacagctgagaagtcctacattcaagacgtcgttagcgatgatctgaggaagagccccaagcgtttctggtcatatataaagagtaagaggcaagagacagaaggtgtatctcccctcatcaataaggacagattccttcagagtgaaagctcaagaaaagcggacatcttcaatgaccaattccagtcagtctataccaaagaagacactacaagtattccagacaagg
gi|4 : tacccctgacatttcaaactctacatcagaatcgagtcacagctttacaaactcaacttttagcttggtaggcagcccagaagcttcatcctcgccgaaacctaagctccaatttggtaccaaaccaaagacaaggcgagcactacgaatattgaccgttaacttccagagtgtacgcaagaagggaaggaatatcgatgttttagttgaaacaacaaggccagacatcatactaggaacagaaacctggctgtcagatgacatcgcatctccatacttcttcgatccgtcgcttggttttaaagtttaccgtcgagataggccgaatgtaccccatggcggagtgcttctagcagtaaaagacgatattaaagtgttagatgttgggacacacaagcaacttgaacttatctctggtaccatcaaaataggcaagaagagaatggtcctcacttcatactaccgtcctccagataaagttgatgaaagttatcttgaaatggtcagcgccgaattcacaagactcaagaataaatacaagaaggctatattcatcattggaggagacttcaacattccagacgttgattggacaagaaacacaatttcaaaggcacctcatatataccctcaacgtgtgagccaggcattccttgatattgtcatggatatgagccttgaacaactagtagatttcccaactagactacagaacacgcttgatcttgttttcacaagccacccaagtttcaagatacgatgcaaaccattaccaccaataggactaaagagtgaccatgtcattgttctcctagacacagctcatcaaccccaacgactccgacttcctcgtagaaagatatatttatggaagaaggccaacatagatggcatcaaacatcatatgacgcagtacagtcagacgtttaccgacacaaccttccagtctattgaatatatgtggacatcattcaaggcagtcatcgcatcatctttagaacagtataCAAGAAGGGCATCTTAATTATAGCTGGAGACTTCAATCTCCCTGACATAGACTGGA-AAGACCAAACCATAACTGGAAA------CCA---ATACCCGTTTA-GAGTCAACCAATCATTCCTGGACATGGTAGCA--GATAACAGTTTTGAACAAATCGTCAACTTCCCCACAAGAAAACAGAACACATTAGACATCATCCTAACTACTCATCCCAGCTTCAATCAACGATGCAAACCCATGCCTTCTATTGG--T-AACAGCGACCACGATATTGTCCTGTTCGATAC----TA-CAATCACTGCGACACGTCCAAAACCACCAAGAAGAAAGATTCTCCTGTGGAAGAAAGCAGACATCCAAGGCATCAGGGACGACTTATCCGACCTATCGGGTATAACCAACCTGAATGACCCCTCAATAGAAGACTCTTGGGCTACACTAAAGTCAAAAATACAAACTACCATTGAAAAGCGAGTCCCTTCGAAAATGACA-ACATCTAGAAATACACACCCATGGATGAATACTGAGAT---CAAGA-GACTAATTCGTAGAAAACAACGAGCACATAAGAAAGCGAGGCATTCC---AA-TC--AGAAACGGGACCTTGACAG
gi|4 : AGC--ACATA-AGAAAGCGAGGCATTCCAAT--CAGAAACGG--GACCTTG--ACA-----GAAGTACT-TAGTGGACACG--GTG--AGT-CATGACTTCAA--AGA--CGA-CTCTAAGAAGTTCTGGGCCTTCGTCAAAAAGT--AAA-GGACA--GGA-AGC-CACTGGTGT-T--GCGCCACTAAA-AAATAA-GG-ATGGTTACCTC-CAAAGCAACAAC--GAAGCT-----AGAGCTAACATTCTCAACGAGCAATT--T--GTC--TCTGCCTTCACC-CGTGAAA-------ACA-----CCACCTACATC-----CCAGACA-TGGGTCAGAGTGAAATACCATCAATGTCA--AACATTACAGTCGACTGGAAAGGGGTCCACAAATTGCTGATG--AATCTCAAGACCAAGAAAGCCACTGGCCCAGACGAGATTCCAGCCTTCATaagtacttagtggacacggtgagtcatgacttcaaagacgactctaagaagttctgggccttcgtcaaaaagtaaaggacaggaagccactggtgttgcgccactaaaaaataaggatggttacctccaaagcaacaacgaagctagagctaacattctcaacgagcaatttgtctctgccttcacccgtgaaaacaccacctacatcccagacatgggtcagagtgaaataccatcaatgtcaaacattacagtcgactggaaaggggtccacaaattgctgatgaatctcaagaccaagaaagccactggcccagacgagattccagccttcatc
gi|5 : caagaagggcatcttaattatagctggagacttcaatctccctgacatagactggaaagaccaaaccataactggaaaccaatacccgtttagagtcaaccaatcattcctggacatggtagcagataacagttttgaacaaatcgtcaacttccccacaagaaaacagaacacattagacatcatcctaactactcatcccagcttcaatcaacgatgcaaacccatgccttctattggtaacagcgaccacgatattgtcctgttcgatactacaatcactgcgacacgtccaaaaccaccaagaagaaagattctcctgtggaagaaagcagacatccaaggcatcagggacgacttatccgacctatcgggtataaccaacctgaatgacccctcaatagaagactcttgggctacactaaagtcaaaaatacaaactaccattgaaaagcgagtcccttcgaaaatgacaacatctagaaatacacacccatggatgaatactgagatcaagagactaattcgtagaaaacaacgGATCCCTCCATAGAAGACTCTTGGGCTAGATTGAAGTCAAAAATACAAACTGCCATTGAAAAGCGAGTCCCTTCGAAAATGACA-ACATCTAGAAACACAAACCCATGGATGAATGCTGAGAT---CAAGA-GATTGATTCTTAGAAAGCAGCGAGCACATAAGAAAGCGAGGCATTCC---AA-TC--AGAAACAGGACCTTGACAGG-----TATAAGC--CTCTACAGAAAG--AGGTA---CAATACTAGATACGTAAGGCC--A--ACA----AGAAGTACT-TAGTGGACACG--GTG--AGT-CATGACTCCAA--AGA--CGA-CTCTAAGAAGTTCTGGGCCTTCATCAAAA-GC--AAA-GGACA--GGA-AGC-CACTGGTGT-T--GCACAACTGAA-AAATAA-GG-ATGGTTACCTC-CAAAGCGACAAT--GAAGCT-----CTAGCTAACATTCTCGATGAGCAATT--T--GTC--TCCGCCTTCACC-AGTGAAA-------ACACCAGTCCACCTATACT-----CCAGACA-TGGGTCAGAGTGAAATACCCTCAATGCCA--AACATTGCAGTCGACTAGAAAGGGGTCCACAAATTGCTGATG--AATCTCAAGACAAAGAAAGCAGCTGGCCCAAACGAGATTCCAGCCTTTAc
gi|6 : ACTCTTGGGCTAGATTGAAGTTATAAATACAAACTACCATTGAAAAGTGAGTCCCTTCAAAAATGACA-ACATCTAGAAACACAAACCCATGGATGAATACTGAGAT---CAAGA-GGTTGATTCATAGAAAGCAGCGAGCACATAAGAAAGTGAGGCATTCC---AA-TC--AGAAATGGGACCTTGACAGGACTGGTATAAGC--ATCTACAGAAAG--AAGTA---CAATACCAGATACGTAAGTCC--A--ACA----AGAAGTACT-TAGTAGACACG--GTG--AGC-CATGACTTCAA--AGA--CGA-CTCTAAGAAGTTCTAGGCCTTCGTCAAAA-GC--AAA-GGACA--GGA-AGC-CACTGGTGT-T--GCACCACTGAA-AAATAA-GG-ATGGTTACCTC-CAAAGCGACAAT--GAAGCT-----AGAGCTAACATTCTCAATGAGCAATT--T--GTC--TATACCTTCACC-CGTGAAA-------ACA-----CCAACTACATT-----CCAAACA-TGGGTCAGAGTGAAATACTCTCAGTGCCA--AACATTGCAGTTGACTGGAAAGGGGTCCACAAATTGCTGATGAAAATCTCAAGGCGAAGAAAGCCA--------------ATTCCAGCCTTCAT
gi|7 : TCCCTACTAAAATGTCCTGCA-CTCGACAGACACACCCTTGGGTCACCACCAAGCTGCGTAGGATGATGA----GAAGGAAGCAGAGAGCCCACTGGCGGGCCAGGAAGTCTGGGAACTCTAAGACATGGGA-----A-AGA-----TACAAGA--TATTACAAACAG--CAGT---------CCAGA---AAGAGACCAGA--ACAGCTGAGAAGTCCTACATTCAAGACGTCGTT--AGC-GATGA-TCTGA--GGA--AGAGCCCCAAGCGTTTCTGGTCATATATAAAGA-GT--AAG-AGGCA--AGA-GAC-AGAAGGTGT-A--TCTCCCCTCAT-CAATAA-GG-ACGGATTCCTT-CAGAGTGA-------AAGCTCAAGAAAAGCGGACATCCTCAATGACCAATT--C--CAG--TCAGTCTATACC-AAAGAAG-------ACA-----CTACc
gi|8 : atatttatggaagaaggccaacatagatggcatcaagcatcatatgacgcagtacagtcagacgtttaccgacacaaccttccagtctattgaatgtatgtgggcatcattcaaggcagccatcgcatcttctttagaacagtataCC---AA-TC--AGAAACGGGACCTTGACAGG-----TATAAGC--GCCTACAGAAAG--AAGTA---CATTACCAGATACGAAAGGCC--A--ACA----AGAAGTACT-TAGTGGACACG--GTG--AGT-CATGACTTCAA--AGA--TGA-CTCTAAGAAGTTCTGGGCCTTCGTCAAAA-GT--AAA-GGACA--GGA-AGC-CACTGGTGT-T--GCGCCACTAAA-AAACAA-GG-ATGGTTACCTC-CAAAGCAACAAT--GAAGCT-----AGAGCTAACATTCTCAACGAGCAATT--T--GTC--TCTGCCTTCACC-CGTGAAA-------ACA-----CCACCTACATC-----CCAGACA-TGGGTCAGAGTGAAATACCATCAATGTCA--AACATTACAGTCGACTGGAAAGGGGTCCACAAATTGCTGATG--AATCTCAAGACCAAGAAAGCCACTGGCCCAGACGAGATTCCAGCCTTCAaagt
gi|9 : CATCTTAATAATAGCTGGAGACTTCAACCTCCCTGACGAAGACTGGA-AAAACCTAACCATAACTGGAAA------CCA---ATACCTGTTTA-GAGTCAACCAATAATTCCTGGACATGGTATCA--GACAACAGTTTTAAACAAATCGTCAACTTCCCCACAAGAAAACAGAACACATTAGACATCATCCTAACAACTCATCCCAGCTACAAACAACGATGCAAGCCCATACCCTCTATTGG--T-AACAGCGACCACGATATTGTCCTGTTCGATAC----TA-AGATCACTGCGACACGTCCAAAACCACCAAGAAGAAAGATTCTCTTATGGAAGAATGCAGACATCCAAGGCATCAGGGGCTACTTATCTGACCAATCAAGTATAATCAAACTGAATAATCCTTCCATAG
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): GACATCCTCAATGACCAATTCCAGTCAGTCTATATCAAAGAAGACACTATAAGTATTCCAGACAAGGGACCAAGCCCTCACCCAACTATGATGGGACTCAAGATCCGCCCCACCGGAGTCGCAAAGCTTCTTGGTAACCTTAAACCA
Unaligned ( gi|15 ): ATAGTCACTAATGAGTGAGATTCTGTCACACTGACCATCTCTCTCTCTTAGCACCAAGCCCTCCGTGAACCCCATCACCGGGACAGTCAAGGGAGTGCAGAACTTCTCCACAACCTG
Unaligned ( gi|16 ): ACTGATCACATACTCTCCCTCCAAACATAATGCTCTCCATAAACCCCATCACCACGAGAGTCAAAAGAGTGCAGAAACTACTCCAGAACCT
Unaligned ( gi|17 ): CCTCACCCAACTATGATGGGACTCAAGATCCGCCCCAACGGAGTCGCAAAGCTTCTTGGTAACCTTAAACCA
Unaligned ( gi|18 ): ATGATCAGAGAAGCAACACCAAAAGGATCATCAAATCCAAACAGCTTTTGGTGTAGCTCCTCTAACAAACA