lowQualScore : 33 33333333 111111 1 1111 55555555555555555555555555555555555555555 1 222 111111111 11111111111 11111111111111111 4444444444444444444 11111111 1111 1 777777777777 111 2222222 2222222 1111 1 11111111 11111 1 4444444444444444 11 11
lowQualScore : 8 00 6 22222222 0 000000 0 5 8888 0 6 5 5 1 77 2 99999999999999999999999999999999999999999 55 4 666 88 333 5 9 44 0 999999999 22222222222 2 33 88888888888888 2 0 33 2 77777777777777777 1111111111111111111 0 6 7 666 2 666666 99999999 4444 4 5 5 2 1 6 444444444444 0 77 333 4 3333333 3 44 6 7777777 4 9999 4 55 4 4 66666666 4 66 7 66666 6 4 0000000000000000 4 11 6 88
lowQualScore : . .. . ........ . ...... . . .... . . . . . .. . ......................................... .. . ... .. ... . . .. . ......... ........... . .. .............. . . .. . ................. ................... . . . ... . ...... ........ .... . . . . . . ............ . .. ... . ....... . .. . ....... . .... . .. . . ........ . .. . ..... . . ................ . .. . ..
lowQualScore : 0 33 0 44444444 9 222222 1 1 5555 1 9 2 6 9 00 3 00000000000000000000000000000000000000000 00 2 444 11 999 4 5 22 8 666666666 77777777777 7 44 88888888888888 5 8 44 5 88888888888888888 2222222222222222222 9 5 7 000 0 444444 22222222 9999 4 1 3 2 5 1 333333333333 2 55 555 8 5555555 1 22 5 8888888 0 8888 0 55 4 4 11111111 4 99 0 77777 7 8 0000000000000000 4 88 0 22
consensus : CAT-TTTA--TTGCCATA------A-ATATACA-A----TTGGGTCGGGTCACAA---GTTCTTACAACGTTAGTTACGACCCTTCCCTAAATACAATATTACGTAGAATT---------AATGCATGGCT---NAA--A--TGATN-T--TAGAAAGTT---ATA-CTTTT-ATAAACAAATNCAATGCTTAAGCGAAAACAAACATATTCTCT--GAATA---------GTATA-----------CA-ATATACA--TGTA------A-------ACACTGGGA--AG-AATA------------AGTAAA-G-AG--G-------T--GCGAAATGCTTAGTACAT---TGATCAA-ACAG------AGG-------ATAAA---CAGT-ANTTCGA-AAAGATAANAGTGGAAAGATAGAAGAGAAGA--GA--A-TATATACATGTACATGTCAACCAAACATCATTGCTCTGTAA-TTTAACATTAATCATTAGGCGGTATATG-TG--GTCGAAAGCGTCCACTCTCTTTAATAAACTT-ATGAACGCAT---CTAATTA-A--ATGTT-CATTATGTTCTTGCTTTAA--------TT-CGG--TGTTTCCA-----TAC-AAGATAATGTTTATATTAAACG-G--GT-GANAGTTTCTTGTAGATTGAAAAAGTTGG
Reference ( gi|2 ) : CAT-TTTA-ATTACCATA------A-ATATACA-A----TTGGGTCTGGTCACAC---GTTCTTATAATGTTAGTTATGACTCTTCCCTGAATACAATATTACATAGCTTT---------AATACATGGCT---TAA--G--TGACT-T--TACAAAGTT---ATA-TTTTTTATAAACAAATACAATGCTTAAGCGAAAACAAACATATTTTCT--GAATA---------GTATA-----------CA-ATGTACA--TGTA------A-------ACACTGGGA--AG-ATTA------------AATAAA-G-AG--G-------A--GCGAAATGCTTGGTGCAT---TGATCAA-ACAG------AAT-------ATAAA---AAGT-ATTTCGA-AAAGATAAAAGTGGAAAGACAGAAGAGAAAAAAGAC-A-TATATACATGTACATGTCAACCAAACGTCATTGCTCTGTGG-TTTAACATTAATCGTTTGATGGAATATG-TG--GTTGAAAGCGTCCAGTTTATATAATAAACTT-ATGAACGCAT---ATAATTA-A--ATGTT-CATTATGTTCATGCTTTAA--------TT-CGG--TTTTTCCA-----TAC-AAGATAATGTTAATGTTGAATG-G--GTAAAAAAATTCTTGTAGACTGAAAACGTTGG
gi|21 : CATATTTATATTGCCATATACAC-ACACACACA-C----TTGGGTCGAGTCACAC---GTTCTTACACTTAAAGTTACGATCCTTCAC----TACAATATTACATAGAACT---------GATGCAGGGCT---AGA--A--CGTTA-T--TAGAGAGTT---ATA--TTTTTATAAACAAAT
gi|3 : aaAT-TTTA--TTGCCACA------T-ACATACA-C----TTGGGTCGGGTCACAA---GCTCTTACAACGTAACTGACGACTCTTCCCTGAATACACTAGTACATAGAATT---------AAAACATGGATAAAAAA--G--TTA---T--TGGAAAGTC---CTG-CTTTTTA-AATCAAATCAAATGCTTAAGCGTAAACCAGCACATT--------ATAC--------GTAAA-----------AA-ATGTACA--CGCA------G-------ACA--GTGA--AGTAT----------------TAAA-G-AG--T-------T--G-GAAAGGCTTCGTATAT---AGACTAATAC-G------AAG-------ATAGGACTAGGT------GATAAAGATATGGGAGGGAAGACAGAAGAG-CAGGAGA--------------TACCTGTCAGTCGA-------------GTAGCTTTAACATGAAATATTAGTTGGTACGTA-TT--GTTGAAAGCCACCACTATCTTTAATAAAAGC-ACGAACGCAT---CTGAATA-GGCATATT-C--TATGT--A---TTCAA--------TTATAGTATTCTTTCAGAAATTACTAAGAAAATTATGAT-TCAGATG-ATCTTACAAAAATT-TTGTA
gi|16 : cctAT-TTTA--TTGCCATA------A-A-------A----TTGGGTCGATTCTCAA---GTTGTTACAAACTTGGTATTGACCCTGCCCTAAATACAATATTACATATAATT---------AATGCATTGCTAA-AAA--A--TAA---T--TAGAAAGT
gi|1 : tctaatAT-TTTA--TTGCCATA------T-ATATATATA----TACGG----GTAACAA---GACCTTACAACGTTAGTTACGACCATTATCTAAATACAATAATGCATAGAATT---------AATGTATGGC----TAACCA--T-ACTAT--TAGAAAGTTCAAGTA-TTCTT------CAAATTCAGTACCTTCGC-----TAAACAT------------------------TATA-----------CA-ATGTGCA--TGTA------A-------ATAGTGAGA--AG-AATA------------AATAAATA-AA--G-------T--ACAAAAGGCTTAATACAT---AGAcgcatgtcagccaaacatcttttctctgtgatttaacatttatcattaggtggcttgtgtggtggaaagcatccattctttaacaaacttataaatgcatcttattaaatgttcacatatttttgcttta
gi|33 : gtatgtagtgagtattaacgtattaccatcctgtgtgtgagatattcttacagtctgatcaggcaaacatacacaaacatgtctaaatattattatttgaaaagtccaaatatgcttaaatttttgcactttcgagaaaaatggcaacattttataaatttggaaatatttaagaaacgctaaattatgattgaaatatatgtcaccttctccgcataactatgtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttttatttatttctacacattttcatataattattgaatcatttgttatataaatagtatcatgtatcctcaagggtctcagggccatctggaatttttgtgaataaaacatatataaaaacatAT-TTTA--TTGCCACA------C-ATATACA-A----TTGGGTC-GGTCGCA
gi|29 : atTA-ATTGCCATATAAACTA-GTATACA-A----TTAGGTTTGGTCACATCAAGATCTCACAACATTAGTCACAATTCTTCa
gi|4 : A------A-ATATACA-A----TTTGGTCGGGTCACAA---ATTCTTACAACGTAAGTTAAGACCCTTTTCTAAA-ACACAATTAACTAAAACT---------AAGGCATGGCT---AAAA-G--T--TT-T--CAGAAAGTT---ATA-ACTTT-ATAAACAAATAAAATGCTTAAGCGAAAACAAACGTATTATCT--AAAAA---------GAATA-----------CA-ATATACA--TGTT------A-------TCACTGAGA--AG-AATA------------AGTAAA-G-AA--G-------T--ACGAAATGCTTATTGCATAAACAATTAA-ACac
gi|9 : aagcgtatataattattacattgtattggtttaA------A-ATATAAA-AAAAATTTGATTGGAACAAAA---GTTCTGGCAAAGCTAGTTACGACCCTTGCCTAAATACTATACTACGTAGACTCGTGGAAAGAAAAAAATG--C---TAA--A--C-ATT-TATTAGAAAGTT---ATG-CATTT-ATAAACAAAATCAATGCATTATTGAAAGCAAACACATTCTCT--AAACA---------GTATA-----------GA-ATGTACA--TGTA------A-------ACACTGTGA--AA-AATA------------AACAAA-G-AA--------------------------TCCGT---TAAGTAA-AGAG------AAG-------ATAAA---AAGA-AGTATAC-AAAAATTAGAGCGGAAAGATAGAAG------------------------TAAATG--AACTA--CG-CATTGCTCTGTAA-TTTgattcgagttcttacaatactatatattttaaatgaaagtaacctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaagaactatttatatcaaagatataataacatgactgtgtagtccgacgaccaataacaaatgcaatgacgaagtgtaccagtcacca
gi|27 : tgccTACA-A----TTGTGTTGGGTCAC---------TTAGAATGCTAGCTACAACCCTTCCCTAAATACAATAGTACGTAG-------------AATAAATG
gi|31 : cc---GTTCTAACAGCATTAGTTACGACCCTTCCCTAAATACAGTATTACcacgacatg
gi|5 : ttgcagaaTCCTTACAACGTTAGTTACGACTCTTCCC-------AAT-----------TT---------A-TGTATGGCG---TAA--C--AGGTA-T--TAAGACGTC---ATGCTTTTTTA-AAACAAATTCAAAGATTAAGCAAAACCTAACATATTATTT--GAACATATATGTAGGTATATGCATGCATATCG-ATGTACA--TATATTGTATA-------ACAATGTGA--GG-AATA------------TGCAAT-G-AG--T-------T--TTGAAATAATTAGT--AT---AGATCGA-ACAG------AAG-------ACGAA---AAGT-AGTTTGT-AAATATTAGAGTGGAAAGATTG--------AAAGGC-AGTGAATATATGTA-AT-TTAAC----CTTCATT----------------ATTA---GCTTG------TATGCTG--ATCGAAAGCGATGATTTT-TTTAATAAA-GT-ATAAACGCATCCGA-AATAA-A--ATGTTGTTTTA-GTTCTTGTTTTAAACGGCGAGTT-CAG--TTTT--AA-----TAC-A
gi|8 : AGTTACGACCCTTCCCTAAATACAATATTACATAAAGTT---------AATGCATGGCT---AAA--A--TGTTG-T--TAGAAATTT---ATA-CCTTT-ATAAACAAATACAATGCTTAAGCGAAAACAAACATATTCTCT--GAAGA---------GTATA-----------CA-ATATACA--TGTA------A-------ACACTGGGA--AG-AATA------------TGTAAA-------G-------T--GCCAAATACTTAGTACAT---TGCTCAA-ACAG------AGG-------ATAAA---CAGT-AATTTGA-AAAGATAATAGTGGAAAGATAGAAGGGA------AC-A-TATATGCATGTACATGTCAACCGAACATCATTGCTCTGTAA-TTTAACATTAATCATTAGGTGGTACATA-TG--GTtgtttttgtatatat
gi|15 : TGGTT---TAA--GCATCATA-C--TATTAAATT---ATA-CTTTTGA-AAACAAATTTAATGCTTAAG---AAATAAAAATATTATGT--GAGTA---------GTATA-----------CA-AAATACG--TG-------------------CTATCA--AT-ATTA------------AA-AAT-A-AG--G-------A-----------TTATTACGTTG-TGATAAA-AGAT------GAT--------TAA-------T-ATTTCGT-AAAGATCAGAACGAGAATATGGAAGAAAc
gi|6 : ctgaatgtatt-T--TAGAAAGTT---ATA-CTTTT-ATGAACAAAAGCAATGCTTAATCGAAAATAAAGATGTTCTCT--GAATA---------GTATA-----------CA-ATATACA--TGTA------A-------ACACTGGGA--AG-------------------TAAA-G-TG--------------TGAAATGCTTAGTACAT---TGATCAA-AC-G------AATG------ATAAA---TAGT-AATTTGA-AAAGATAGTAGTGGAAAGATAGAAGAGAAGAAG----A-TATATAAATGTACATGTTAAACAAACATCATTGCTCTGTAA-TTTAACATTAATTATTAGGCGGTATATG-TG--GTCGAATACGTCCACTTTCTTTA-TGAACGT-ATGAACGCAT---CTAATTA-A--ATATT-CATTATGTTCTTGCTTTAA--------TT-CGG--TGTTTCCA-----TAC-AAGATAATGTTTATATTAAGCG-G--TT-GAGAGTTTCTTGTAGATTGAAAAACTTGGggtgtcttgctgtgtaatgtaacatttaatattaggcgttatgtgtggtcaaaggcgatcttctcttttaaaa
gi|23 : ta-T--TAGAAAGTT---ATA-CTTTT-ATAAACAAATACAATGCTTAAGCGAAAACAAACATATTCTCT--GAATT---------GTATA-----------CA-ATATTCA--TGTA------A-------ACAATGGGG--AG-AATA------------AATAAA-------G-------T--GCGAAATGCTTAGTACAT---TGATCAA-actctttgagttgtgaatct
gi|12 : AGTT---ATA-TTTTT-ATAAATAAACACAATGCTTAAGGGAAAACAAACATACTTTGT--CAAGGAC-------GTGTA-----------TAGACGTCTA--TGTA------ATTCCTTGATTCTGCGAATAC-ATTACAATATTCATGTAATAAC-T-AG--GATGAATAA--GT-AAATGCTTAGGATAT---TGACCAA-ACAG------AGG-------ATAAA---CAGT-AATTTGA-ATAGATAACAGTGGAAAGATAGAAGAGACGAAA----A-TAAAAACATGTACATGTCAACCAAACATCATTGCTCGGTGA-T
gi|10 : gcatgactaaaaggttattatttacattagtttttA-TTTTTTA--AATAAATGTAATGCTTAAGCGAACGCAAACATATTCTCT--GAATA---------GCATA-----------CA-CTGTACA--TGTA------A-------ACACTGGGA--AG-AATG------------AGTAAA-G-----G-------ATTGCGAAATGCTTAGTACAT---TGATCAA-ACAG------AGG-------ATAAA---CAGT-AATTTGA-AAAGATAATAGTGGAAAGATAGAAAAGAA----GATGA-TATATACATATACAT-------------CAT-GCTCTGT------AACATTAGTCATTAGGTTGTTTATG-TG--GGAGAAAGCGTCCACTCTCTTTAA-AAATTC-ATGTATGCAT---CTAATTA-A--ATATT-CATTATATTCTTGCTTTAA--------TT-Cat
gi|11 : taATGCTTAAGCGAAAACAAAC----TTTCTCAGAGTA---------GTATA-----------CA-ATATACA--TGTA------A-------ACACTGGGA--AG-ATTA------------AGTAAA-GTA---------------CGAAATGCTTAGTACAT---TGATCAA-GCAG------AGG-------ATAAA---CAGT-AATTTGA-AAAGATAATAGTGGAAAGATAGAAGAGAA------T-A-TATAAACATGTACATGTCAACCAAACATCATTGCTCTGTAA-TTTAACATTAATCATTAGGCGGTAAATG-TG--GTCGAAAGCGTCCACTCTCTTTAATAAACTT-ATGAACGCAT---CTATTTA-A--ATGCT-CATTATGTTCTTGCTTTAA--------TT-CGG--T
gi|13 : GAAAACAAACATATTCTCT--GAATA---------GTATA-----------CA-ATATACA--TGTA------A-------ACAATGGCA--AG-AATA------------TGTAAA-G-TG--------------CGAAATGCTTAGTTCAT---TGATCAA-ACAA------AGG-------ATAAA---CAGTTATTT-GA-AAAAATAATAGTGGAAAGATAGAAGAGAAGA--------TATATGCATGTACATGTCAACCAAACACCATTGCTCTGTAA-TTCATCATTAATCATTAGGCGGTATATG-TG--GTCGAAAGCGTCCACTCTATTTAATAAACTT-ATGAATGCAT---CCAATTA-A--ATGTT-TATTATGTTCTTGCTTTAA---------T-CGG--T
gi|19 : TA-----------CA-ATATACA--TTTA------A-------ACAATAAGA--AG-AAGA------------AATAAA-G-AGTTG-------T--GC---ATGCTTTATACGT---AGATCAA-ACAGAAGACAAATTGTGACGATAAA---TAGC-ATTTCAT-AATGATAAGAGTGGGAAG
gi|14 : -----------CA-ATATACACATGTA------A-------ACAATGGGA--AG-AATA------------AGTCAA-G-TG--------------CGAAATGCTTAGTACAT---TGATCAA-GCAG------AGG-------A--AA---CAGTGATTTGAA-AAAGATAATAGTGGAACGA--------------------TATATACATGTACATGTCAACCAAACATCAATGCTCTGTAA-TTTAACATTAATCATTAGGCAGTATATA-TG--GTCGAAAGTGTCCACTCTGTTTAATAAACTT-ATGAACGCAT---CTAACTACA--GTGTtggaaaaatggatggcatgagataaaagttagccgaacagtaacactctacgat
gi|7 : ACA--TGCA------A-------ACACTTGGA--AG-AATA------------TCTAAA-G-AA--T-------A--GCAAAATGCTGAGTACGT---TCATCAA-ACAG------AAG-------ATAAA---TAGT-ATTTTGA-AAAGATAATAACGTAAAGGTAGTAGAAAAAGAAGA----TATATACATGTGCATGTCAACCAAACAGCATTGCTCTGAGA-TTTACTATTAATCATT--ATGTCGTATG-TGCAATCGAAAGCGTCAACTATCTTTAATAAACTT-CTGAAAGTTT---CTAATAA-A--ATGTG-CATCATGTTCTTGTTTTGA--------TT-CGG--TGTTTCGA-----TAC-AAGATAATGTTTATCTAAAACG-G--GT-GATATTTTCTTGTATATTGAAAAGGTTGaaccacaggcaatatttttagagttttatttggt
gi|20 : A-G-AA--G-------T--GCGAAATTCTTGGTATAT---TG------------------T-------ATTGA---TAGT-ATTTCGA-AAAGATGGAAGTGGAAAGACAGAAGAGAAG---GAG-A-TAT------GTATATGTCAGTTAAACATCATTGCTCTGTGA-TTTAACATTAATCATTAGGTAGTATGTG-TG--GTCGAAAGCGTagtttgaatcta
gi|26 : --GCGAAA-----AGTACAT---TGATAAA-ACAG------AAG-------ACTTA---GAGT-ATTTCGA-AATGATGAGAGTTGAAAGGTAGACGAG---AATGAG-A-TATTTACATGTAtaaatctcttaaagtaa
gi|32 : t--GCGACATGCTTAGTACAA---TGATTAA-ACAG------AAA-------GTCAA---TAGT-ATTTTGA-AA
gi|22 : tGCTTAGTACAT---TGATCAA-GCAG------AGG-------ATAAA---CAGT-AATTTGA-AAAGATAATAGTGGAAAGATAGAAAAGAAGA--------TATGTACATGTACATGTCAACCAAACATCATTGCTCTGTAA-TTTAACATTAATCATTAGGCGGTATATG-TG--GT
gi|28 : CTTAGTACAT---TGATCAA-GCAG------AGG-------ATAAA---CAGT-AATTTGA-AAAGATAATAGTGGAAAGATAGAAGAGAAA-------A-TATATACATc
gi|16 : aCATGTCAGCCAAACATCTTTTCTCTGTGA-TTTAACATTTATCATTAGGTGGCTTGTG-TG--GTGGAAAGCATCCA--TTCTTTAACAAACTT-ATAAATGCAT---CTTATTA-A--ATGTT-CA-CATATTTTTGCTTTA
gi|18 : tctaatattttattgccataaaattgggtcgattctcaagttgttacaaacttggtattgaccctgccctaaatacaatattacatataattaatgcattgctaaaaaataattagaaagtcgTTAACATTAATCATTAGGCGGTATATG-TG--GTCGAAGGCGTCCACTCTCTTTAATAAACTTAATG-ATGCAT---TTAATTA-A--ATGTT-CATTATGTTCTTGCTTTAA--------TT-CGG--TGTTTCCA-----TAC-AAGATAATGTTTATATT--ACGCG--GTTGAAAGTTTCTTGTAGATTGAAA--GTTGG
gi|24 : aATGTTCTTACTTTAA--------TT-CAG--TGTGTCCA-----TAC-AAAATAATGTTTATATTGAGTG-A--GT-GATAAGTTCTTGTTGATTGAAAAAGTTGGactttttgagttgtcaatcta
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|17 ): TACGACAAACATATACAATACCATAACAAGCATAGATAATGAGTACATTGTACAAGCTATTTAACGATTAAAATTCTTACAATAATATAAATTTATAATGACATTAACCTGTAATAATAATTAAGAGCTATGTATATCAAAGATATCGTATTATATAGTTTCAATGCAGTCTAATAAAAAAAACAAGACTATGTTGTCCGGCGACTGATGGCGAATGCAATGAAGCATTTTACCTGTCACAAG
Unaligned ( gi|25 ): GTCGCGTCTGTCATCTAACATTAATTATAAGCTGGCAAATACGGTCGAAATATTGATAGAAATGTGAACACATCTGAATATATATGCATTGT
Unaligned ( gi|30 ): GTATTACCATCCTGTACGCGAGATATACTTTTTCTTACAGCTTGAACATATCCAAATATCTTTAAAT
Alignments
lowQualScore : 22222222 111111111 222222 111111111 11111111111 111111 2222222 1111111111111 222222222 11111111
lowQualScore : 5 5 77777777 4 4 8888 1 666 44 1 4 444444444 55 55 4 000000 44 555 66 6 1 0 777777777 11111111111 33 2 000000 2 7777777 555 1 1 0 1111111111111 2 2 1 3 2 2 1 7777777 2 888888888 4 2 2 4 1 2 2 4 1 2 3 44 3 44 3 66666666 8 1 22 0
lowQualScore : . . ........ . . .... . ... .. . . ......... .. .. . ...... .. ... .. . . . ......... ........... .. . ...... . ....... ... . . . ............. . . . . . . . ....... . ......... . . . . . . . . . . . .. . .. . ........ . . .. .
lowQualScore : 7 0 88888888 4 0 5555 6 444 66 3 6 555555555 00 00 0 333333 66 888 88 2 0 1 111111111 99999999999 22 4 000000 7 6666666 777 8 9 7 6666666666666 1 6 0 6 1 2 0 2222222 2 999999999 9 4 0 1 1 5 9 3 9 9 3 66 3 66 3 11111111 0 0 44 8
consensus : CATTT-TA-TTGCCATA------A-A-TATACA-A----TTGGGTCGGGTCA---CAAGTTCTTACAACGTTA--GTTACGACCCTTCCCTAAATACAATATTACATAGAATT---------AATGCAT--GGCT-AA-A--ATGNT-ATTAGAAAGTT---ATACTTTT-ATAAA-CAAATNCAATGCTTAAGCGAAAACAAACATATTCTCTGAATA---------GTATA-----------CAATATACA--TG-TA------AACACTGGGAAGAATAAGTAAA-GA---GTGCGAAATGCTTAGTACAT---TG-ATCAA-ACAGAGGA-------------TA-AACAGTANTTCGA-AAA-GATAANAGTGG-------AAAGATAGAAGAG-AA-GAGA---ATATATAC-ATGTACATGTCAACCAAACATCATTGCTCTGTAATTTAACATTAATCATTAGGCGGTATATG-TGGTCGAAAGCG-TCCACTCTCTTTAA-TAAACTT-ATGAACGCATCT--AATTA-A--ATGTTCATTAT-GTTCTTGCTTTAA--------TTCGGTGTTTCCATACAAGATAATGTTTATATTAAGCGGGT-GANAGTTTCTTGTAGATTGAAAAAGTTGG
Reference ( family-768 ) : CATTT-TA-TTGCCATA------A-A-TATACA-A----TTGGGTCGGGTCA---CAAGTTCTTACAACGTTA--GTTACGACCCTTCCCTAAATACAATATTACGTAGAATT---------AATGCAT--GGCT-NA-A--ATGAT-NTTAGAAAGTT---ATACTTTT-ATAAA-CAAATNCAATGCTTAAGCGAAAACAAACATATTCTCTGAATA---------GTATA-----------CAATATACA--TG-TA------AACACTGGGAAGAATAAGTAAA-GAG--GTGCGAAATGCTTAGTACAT---TG-ATCAA-ACAGAGGA-------------TA-AACAGTANTTCGA-AAA-GATAANAGTGG-------AAAGATAGAAGAG-AA-GAGA---ATATATAC-ATGTACATGTCAACCAAACATCATTGCTCTGTAATTTAACATTAATCATTAGGCGGTATATG-TGGTCGAAAGCG-TCCACTCTCTTTAA-TAAACTT-ATGAACGCATCT--AATTA-A--ATGTTCATTAT-GTTCTTGCTTTAA--------TTCGGTGTTTCCATACAAGATAATGTTTATATTAAACGGGT-GANAGTTTCTTGTAGATTGAAAAAGTTGG
gi|1 : ATTT-TA-TTGCCATA------T-A-TATATATA----TA----CGGGTAA---CAAGACCTTACAACGTTA--GTTACGACCATTATCTAAATACAATAATGCATAGAATT---------AATGTAT--GGCT-AACC--ATACT-ATTAGAAAGTTCAAGTATTCTT-------CAAATTCAGTACC------------------TTCGCTAAACA---------TTATA-----------CAATGTGCA--TG-TA------AATAGTGAGAAGAATAAATAAATAAA--GTACAAAAGGCTTAATACAT---AG-A
gi|10 : gtatgtagtgagtattaacgtattaccatcctgtgtgtgagatattcttacagtctgatcaggcaaacatacacaaacatgtctaaatattattatttgaaaagtccaaatatgcttaaatttttgcactttcgagaaaaatggcaacattttataaatttggaaatatttaagaaacgctaaattatgattgaaatatatgtcaccttctccgcataactatgtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttttatttatttctacacattttcatataattattgaatcatttgttatataaatagtatcatgtatcctcaagggtctcagggccatctggaatttttgtgaataaaacatatataaaaacatTAATTTT-TTAAA-TAAATGTAATGCTTAAGCGAACGCAAACATATTCTCTGAATA---------GCATA-----------CACTGTACA--TG-TA------AACACTGGGAAGAATGAGTAAA-GGA--TTGCGAAATGCTTAGTACAT---TG-ATCAA-ACAGAGGA-------------TA-AACAGTAATTTGA-AAA-GATAATAGTGG-------AAAGATAGAAAAG-AA-GATG---ATATATAC-ATATACAT-------------CAT-GCTCTGTAA-----CATTAGTCATTAGGTTGTTTATG-TGGGAGAAAGCG-TCCACTCTCTTTAA--AAATTC-ATGTATGCATCT--AATTA-A--ATATTCATTAT-ATTCTTGCTTTAA--------TTC
gi|11 : ATGCTTAAGCGAAAACAAAC-T-TTCTCAGAGTA---------GTATA-----------CAATATACA--TG-TA------AACACTGGGAAGATTAAGTAAA-G-----TACGAAATGCTTAGTACAT---TG-ATCAA-GCAGAGGA-------------TA-AACAGTAATTTGA-AAA-GATAATAGTGG-------AAAGATAGAAGAG-AA-TA------TATAAAC-ATGTACATGTCAACCAAACATCATTGCTCTGTAATTTAACATTAATCATTAGGCGGTAAATG-TGGTCGAAAGCG-TCCACTCTCTTTAA-TAAACTT-ATGAACGCATCT--ATTTA-A--ATGCTCATTAT-GTTCTTGCTTTAA--------TTCGGT
gi|12 : AGTT---ATATTTTT-ATAAA-TAAACACAATGCTTAAGGGAAAACAAACATA
gi|12 : gcatgactaaaaggttattatttacattagtttttATTCTGCGAATAC--------AT-TA-----------CAATATTCA--TG-TA------ATAACTAGGATGAATAAGTAAA--------------TGCTTAGGATAT---TG-ACCAA-ACAGAGGA-------------TA-AACAGTAATTTGA-ATA-GATAACAGTGG-------AAAGATAGAAGAG-AC-GAAA---ATAAAAAC-ATGTACATGTCAACCAAACATCATTGCTCGGTGATctttgtcaaggacgtgtatagacgtctatgtaattccttgattctgcgaatacattacaatattcatgtaataactaggatgaataagtaaatgcttaggatattgaccaaacagaggataaacagtaatttgaatagataacagtggaaagatagaagagacgaaaataaaaacatgtacatgtcaaccaaacatcattgctcggtgatat
gi|13 : gcatgactaaaaggttattatttacattagtttttagttatatttttataaataaacacaatgcttaagggaaaacaaacatactttgtcaaggacgtgtatagacgtctatgtaattccttgGAAAACAAACATATTCTCTGAATA---------GTATA-----------CAATATACA--TG-TA------AACAATGGCAAGAATATGTAAA-G-----TGCGAAATGCTTAGTTCAT---TG-ATCAA-ACAAAGGA-------------TA-AACAGTTATTTGA-AAA-AATAATAGTGG-------AAAGATAGAAGAG-AA-GA------TATATGC-ATGTACATGTCAACCAAACACCATTGCTCTGTAATTCATCATTAATCATTAGGCGGTATATG-TGGTCGAAAGCG-TCCACTCTATTTAA-TAAACTT-ATGAATGCATCC--AATTA-A--ATGTTTATTAT-GTTCTTGCTTTAA---------TCGGTat
gi|14 : -----------CAATATACACATG-TA------AACAATGGGAAGAATAAGTCAA-G-----TGCGAAATGCTTAGTACAT---TG-ATCAA-GCAGAGGA----------------AACAGTGATTTGA-AAAAGATAATAGTGG-------AACGATA--------------------TATAC-ATGTACATGTCAACCAAACATCAATGCTCTGTAATTTAACATTAATCATTAGGCAGTATATA-TGGTCGAAAGTG-TCCACTCTGTTTAA-TAAACTT-ATGAACGCATCT--AACTACA--GTGT
gi|15 : ---------AATGTATTTGGTT-TA-AGCATCAT-ACTATTAAATT---ATACTTTT-GAAAA-CAAATTTAATGCTTAAG---AAATAAAAATATTATGTGAGTA---------GTATA-----------CAAAATACG--TGCTATC----AATATT---AAAAATAAG-----GA--------------TTATTACGTTG-TG-AT-AA-A-AGATGA-------------TT-AA---TATTTCGT-AAA-GATCAGAACGA-------GAATATGGAAGAA-AG-GTG-----TCT-TGCTGTGTA-ATGT-AAC-------------------ATTTAA-------TATTAGGCGTTATGTG-TGGTCAAAGGCGATCTTCTCT-TTTAA-aaccacaggcaatatttttagagttttatttggt
gi|16 : ctgATTT-TA-TTGCCATA------A-A--------A----TTGGGTCGATTCT---CAAGTTGTTACAAACTTG--GTATTGACCCTGCCCTAAATACAATATTACATATAATT---------AATGCAT--TGCT-AA-A--A-AATAATTAGAAAGTaa
gi|16 : tctaatCATGTCAGCCAAACATCTTTTCTCTGTGATTTAACATTTATCATTAGGTGGCTTGTG-TGGTGGAAAGCA-TCCA--TTCTTTAA-CAAACTT-ATAAATGCATCT--TATTA-A--ATGTTCA-CAT-ATTTTTGCTTTAcgcatgtcagccaaacatcttttctctgtgatttaacatttatcattaggtggcttgtgtggtggaaagcatccattctttaacaaacttataaatgcatcttattaaatgttcacatatttttgcttta
gi|18 : tctaatattttattgccataaaattgggtcgattctcaagttgttacaaacttggtattgaccctgccctaaatacaatattacatataattaatgcattgctaaaaaataattagaaagtcgTTAACATTAATCATTAGGCGGTATATG-TGGTCGAAGGCG-TCCACTCTCTTTAA-TAAACTTAATG-ATGCATTT--AATTA-A--ATGTTCATTAT-GTTCTTGCTTTAA--------TTCGGTGTTTCCATACAAGATAATGTTTATATTACGCGGTT-GAAAGTTTCTTGTAGATTG--AAAGTTGG
gi|19 : aTA-----------CAATATACA--TT-TA------AACAATAAGAAGAAGAAATAAA-GAGTTGTGC---ATGCTTTATACGT---AG-ATCAA-ACAGAAGACAAATTGTGACGATA-AATAGCATTTCAT-AAT-GATAAGAGTGGGAAGTGGAAAAATGGATGGC-AT-GAGA---actttttgagttgtcaatcta
gi|2 : CATTT-TAATTACCATA------A-A-TATACA-A----TTGGGTCTGGTCA---CACGTTCTTATAATGTTA--GTTATGACTCTTCCCTGAATACAATATTACATAGCTTT---------AATACAT--GGCT-TA-A--GTGAC-TTTACAAAGTT---ATATTTTTTATAAA-CAAATACAATGCTTAAGCGAAAACAAACATATTTTCTGAATA---------GTATA-----------CAATGTACA--TG-TA------AACACTGGGAAGATTAAATAAA-GAG--GAGCGAAATGCTTGGTGCAT---TG-ATCAA-ACAGAATA-------------TA-AAAAGTATTTCGA-AAA-GATAAAAGTGG-------AAAGACAGAAGAG-AA-AAAAGACATATATAC-ATGTACATGTCAACCAAACGTCATTGCTCTGTGGTTTAACATTAATCGTTTGATGGAATATG-TGGTTGAAAGCG-TCCAGTTTATATAA-TAAACTT-ATGAACGCATAT--AATTA-A--ATGTTCATTAT-GTTCATGCTTTAA--------TTCGGTTTTTCCATACAAGATAATGTTAATGTTGAATGGGTAAAAAAATTCTTGTAGACTGAAAACGTTGGtaaaagttagccgaacagtaacactctacgat
gi|20 : A-GAA--GTGCGAAATTCTTGGTATAT---TGTATT---------GA-------------TA-----GTATTTCGA-AAA-GATGGAAGTGG-------AAAGACAGAAGAG-AA-GGAG---ATAT-------GTATATGTCAGTTAAACATCATTGCTCTGTGATTTAACATTAATCATTAGGTAGTATGTG-TGGTCGAAAGCG-TTAAATCTCTTAAAGTAA
gi|21 : ATTTATA-TTGCCATATACAC-ACA-CACACA-C----TTGGGTCGAGTCA---CACGTTCTTACA-C-TTAAAGTTACGATCCTTCACTA----CAATATTACATAGAACT---------GATGCAG--GGCT-AG-A--ACGTT-ATTAGAGAGTT---ATATTTTT-ATAAA-CAAAT
gi|22 : aacatGCTTAGTACAT---TG-ATCAA-GCAGAGGA-------------TA-AACAGTAATTTGA-AAA-GATAATAGTGG-------AAAGATAGAAAAG-AA-GA------TATGTAC-ATGTACATGTCAACCAAACATCATTGCTCTGTAATTTAACATTAATCATTAGGCGGTATATG-TGGTC
gi|23 : TTAGAAAGTT---ATACTTTT-ATAAA-CAAATACAATGCTTAAGCGAAAACAAACATATTCTCTGAATT---------GTATA-----------CAATATTCA--TG-TA------AACAATGGGGAGAATAAATAAA------GTGCGAAATGCTTAGTACAT---TG-ATCAA-
gi|24 : AT-GTTCTTACTTTAA--------TTCAGTGTGTCCATACAAAATAATGTTTATATTGAGTGAGT-GATAAGTTCTTGTTGATTGAAAAAGTTGG
gi|25 : TCTGTCATCTAACATTAATTATAAGCTGGCAAATA-CGGTCGAAA------TA------TTGA-TAGAAAT-GTGAACACATCT--GAATA-T--ATATGCATTGT-actctttgagttgtgaatcta
gi|26 : gtcgcgTGCGAAA-----AGTACAT---TG-ATAAA-ACAGAAGA-------------CT-TAGAGTATTTCGA-AAT-GATGAGAGTTG-------AAAGGTAGACGAG-AATGAG----ATATTTAC-ATGTA
gi|27 : TACA-A----TTGTGTTGGGTCA---C------TTAGAATGCTA--GCTACAACCCTTCCCTAAATACAATAGTACGTAGAATA---------AATGCAC--GAC
gi|28 : ccCTTAGTACAT---TG-ATCAA-GCAGAGGA-------------TA-AACAGTAATTTGA-AAA-GATAATAGTGG-------AAAGATAGAAGAG-AA----A---ATATATAC-ATatg
gi|29 : aA-TTGCCATATAAACTA-G-TATACA-A----TTAGGTTTGGTCACATCAAGATCTCACAACATTA--GTCACAATTCTTC
gi|3 : taATTT-TA-TTGCCACA------T-A-CATACA-C----TTGGGTCGGGTCA---CAAGCTCTTACAACGTAA--CTGACGACTCTTCCCTGAATACACTAGTACATAGAATT---------AAAACAT--GGATAAA-A--AAGTT-ATTGGAAAGTC---CTGCTTTT--TAAATCAAATCAAATGCTTAAGCGTAAACCAGCACATT------ATAC--------GTAAA-----------AAATGTACA--CG-CA------GACA--GTGAAGTAT---TAAA-GAG--TTG-GAAAGGCTTCGTATAT---AG-ACTAATAC-GAAGA-------------TAGGAC--TAGGT-GATAAA-GATATGGGAGG-------GAAGACAGAAGAGCAG-GAGA---------------TACCTGTCAGTCGAGTA-----GC-------TTTAACATGAAATATTAGTTGGTACGTA-TTGTTGAAAGCC-ACCACTATCTTTAA-TAAAAGC-ACGAACGCATCT--GAATA-GGCATATTC--TAT-GTac
gi|31 : cctCA---GAAGTTCTAACAGCATTA--GTTACGACCCTTCCCTAAATACAGTATTACattcaattatagtattctttcagaaattactaagaaaattatgattcagatgatcttacaaaaattttgta
gi|32 : ttgTGCGACATGCTTAGTACAA---TG-ATTAA-ACAGAAAG-------------TC-AATAGTATTTTGA-AA
gi|33 : ATTT-TA-TTGCCACA------C-A-TATACA-A----TTGGGTC-GGTCG---CAA
gi|4 : atCATTG-TA-TTGGTTTA------A-AATATACA-A----TTTGGTCGGGTCA---CAAATTCTTACAACGTAA--GTTAAGACCCTTTTCTAAA-ACACAATTAACTAAAACT---------AAGGCAT--GGCT-AA-A--A-GTT-TTCAGAAAGTT---ATAACTTT-ATAAA-CAAATAAAATGCTTAAGCGAAAACAAACGTATTATCTAAAAA---------GAATA-----------CAATATACA--TG-TT------ATCACTGAGAAGAATAAGTAAA-GAA--GTACGAAATGCTTATTGCATAAACA-ATTAA-AC
gi|5 : aagcgtatataattattaTCCTTACAACGTTA--GTTACGACTCTTCCC-------------------AATT---------TATGTAT--GGCG-TA-A--CAGGT-ATTAAGACGTC---ATGCTTTT-TTAAAACAAATTCAAAGATTAAGCAAAACCTAACATATTATTTGAACATATATGTAGGTATATGCATGCATATCGATGTACA--TA-TATTGTATAACAATGTGAGGAATATGCAAT-GAG--TTTTGAAATAATTAGTATA-----G-ATCGA-ACAGAAGA-------------CG-AAAAGTAGTTTGT-AAA-TATTAGAGTGG-------AAAGATTGAAAGG-CA-GTGA---ATAT-----ATGTA-AT-TTAACC--------TT--------------CATT----ATTAGCT--TGTATGCTGATCGAAAGCG-ATGA-TTTTTTTAA-TAAA-GT-ATAAACGCATCCGAAATAA-A--ATGTT-GTTTTAGTTCTTGTTTTAAACGGCGAGTTCA--GTTTTAATACATGTTTTTGTATATATgattcgagttcttacaatactatatattttaaatgaaagtaacctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaagaactatttatatcaaagatataataacatgactgtgtagtccgacgaccaataacaaatgcaatgacgaagtgtaccagtcacca
gi|6 : T-ATTAGAAAGTT---ATACTTTT-ATGAA-CAAAAGCAATGCTTAATCGAAAATAAAGATGTTCTCTGAATA---------GTATA-----------CAATATACA--TG-TA------AACACTGGGAAG------TAAA-G-----TGTGAAATGCTTAGTACAT---TG-ATCAA-ACGAATGA-------------TA-AATAGTAATTTGA-AAA-GATAGTAGTGG-------AAAGATAGAAGAG-AA-GAAG---ATATATAA-ATGTACATGTTAAACAAACATCATTGCTCTGTAATTTAACATTAATTATTAGGCGGTATATG-TGGTCGAATACG-TCCACTTTCTTT-A-TGAACGT-ATGAACGCATCT--AATTA-A--ATATTCATTAT-GTTCTTGCTTTAA--------TTCGGTGTTTCCATACAAGATAATGTTTATATTAAGCGGTT-GAGAGTTTCTTGTAGATTGAAAAACTTGG
gi|7 : ACA--TG-CA------AACACTTGGAAGAATATCTAAA-GAA--TAGCAAAATGCTGAGTACGT---TC-ATCAA-ACAGAAGA-------------TA-AATAGTATTTTGA-AAA-GATAATAACGT-------AAAGGTAGTAGAA-AAAGAAG---ATATATAC-ATGTGCATGTCAACCAAACAGCATTGCTCTGAGATTTACTATTAATCATTATGTCGTATGTG-CAATCGAAAGCG-TCAACTATCTTTAA-TAAACTT-CTGAAAGTTTCT--AATAA-A--ATGTGCATCAT-GTTCTTGTTTTGA--------TTCGGTGTTTCGATACAAGATAATGTTTATCTAAAACGGGT-GATATTTTCTTGTATATTGAAAAGGTTGactctttgagttgtgaatct
gi|8 : A--GTTACGACCCTTCCCTAAATACAATATTACATAAAGTT---------AATGCAT--GGCT-AA-A--ATGTT-GTTAGAAATTT---ATACCTTT-ATAAA-CAAATACAATGCTTAAGCGAAAACAAACATATTCTCTGAAGA---------GTATA-----------CAATATACA--TG-TA------AACACTGGGAAGAATATGTAAA------GTGCCAAATACTTAGTACAT---TG-CTCAA-ACAGAGGA-------------TA-AACAGTAATTTGA-AAA-GATAATAGTGG-------AAAGATAGAAGGG-AA----C---ATATATGC-ATGTACATGTCAACCGAACATCATTGCTCTGTAATTTAACATTAATCATTAGGTGGTACATA-TGGTCagtttgaatcta
gi|9 : TGCCA--------A-A-TATAAA-AAAAATTTGATTGGAACA---AAAGTTCTGGCAAAGCTA--GTTACGACCCTTGCCTAAATACTATACTACGTAGACTCGTGGAAAGAAAAAAAT--G-CT-AA-AC-ATT-T-ATTAGAAAGTT---ATGCATTT-ATAAA-CAAAATCAATGCATTATTGAAAGCAAACACATTCTCTAAACA---------GTATA-----------GAATGTACA--TG-TA------AACACTGTGAAAAATAAACAAA-G-----------------AATCCGT---TA-AGTAA-AGAGAAGA-------------TA-AAAAGAAGTATAC-AAA-AATTAGAGCGG-------AAAGATAGAAG------------------TAA-ATG--------AACT--ACG-CATTGCTCTGTAATTT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TACGACAAACATATACAATACCATAACAAGCATAGATAATGAGTACATTGTACAAGCTATTTAACGATTAAAATTCTTACAATAATATAAATTTATAATGACATTAACCTGTAATAATAATTAAGAGCTATGTATATCAAAGATATCGTATTATATAGTTTCAATGCAGTCTAATAAAAAAAACAAGACTATGTTGTCCGGCGACTGATGGCGAATGCAATGAAGCATTTTACCTGTCACAAG
Unaligned ( gi|30 ): GTATTACCATCCTGTACGCGAGATATACTTTTTCTTACAGCTTGAACATATCCAAATATCTTTAAAT
Alignments
lowQualScore : 22222222 111111111 1111111 111111111 11111111111 111111 1111111 1111111111111 222222222 11111111
lowQualScore : 5 5 77777777 4 4 8888 1 666 44 1 444444444 44 3 3 3 999999 0000000 77777 555 66 6 1 0 777777777 11111111111 33 2 000000 2 33 2222222 2 555 1 1 0 1111111111111 2 2 1 3 2 2 1 7777777 2 888888888 4 2 2 4 1 2 2 4 1 2 3 44 3 44 3 66666666 8 1 22 0
lowQualScore : . . ........ . . .... . ... .. . ......... .. . . . ...... ....... ..... ... .. . . . ......... ........... .. . ...... . .. ....... . ... . . . ............. . . . . . . . ....... . ......... . . . . . . . . . . . .. . .. . ........ . . .. .
lowQualScore : 7 0 88888888 4 0 5555 6 444 66 3 555555555 66 3 6 6 999999 0000000 77777 888 88 2 0 5 111111111 99999999999 22 4 000000 7 22 7777777 0 777 8 9 7 6666666666666 1 6 0 6 1 2 0 2222222 2 999999999 9 4 0 1 1 5 9 3 9 9 3 66 3 66 3 11111111 0 0 44 8
consensus : CATTT-TA-TTGCCATA------A-A-TATACA-A----TTGGGTCGGGTCA---CAAGTTCTTACAACGTTA--GTTACGACCCTTCCCTAAATACAATATTACATAGAATT---------AATGCAT--GGC-T-AA-A--ATGTTATTAG-------AA-----AGTT---ATACTTTT-ATAAA-CAAATNCAATGCTTAAGCGAAAACAAACATATTCTCTGAATA---------GTATA-----------CAATATACA--TG-TA------AACACTGGGAAGAATAAGTAA--AG-AGT---GC-GAAATGCTTAGTACAT---TG-ATCAA-ACAGAGGA-------------TA-AACAGTANTTCGA-AAA-GATAANAGTGG-------AAAGATAGAAGAG-AA-GAGA---ATATATAC-ATGTACATGTCAACCAAACATCATTGCTCTGTAATTTAACATTAATCATTAGGCGGTATATG-TGGTCGAAAGCG-TCCACTCTCTTTAA-TAAACTT-ATGAACGCATCT--AATTA-A--ATGTTCATTAT-GTTCTTGCTTTAA--------TTCGGTGTTTCCATACAAGATAATGTTTATATTAAGCGGGT-GANAGTTTCTTGTAGATTGAAAAAGTTGG
Reference ( family-768 ) : CATTT-TA-TTGCCATA------A-A-TATACA-A----TTGGGTCGGGTCA---CAAGTTCTTACAACGTTA--GTTACGACCCTTCCCTAAATACAATATTACATAGAATT---------AATGCAT--GGC-T-AA-A--ATGNTATTAG-------AA-----AGTT---ATACTTTT-ATAAA-CAAATNCAATGCTTAAGCGAAAACAAACATATTCTCTGAATA---------GTATA-----------CAATATACA--TG-TA------AACACTGGGAAGAATAAGTAA--AG-AGT---GC-GAAATGCTTAGTACAT---TG-ATCAA-ACAGAGGA-------------TA-AACAGTANTTCGA-AAA-GATAANAGTGG-------AAAGATAGAAGAG-AA-GAGA---ATATATAC-ATGTACATGTCAACCAAACATCATTGCTCTGTAATTTAACATTAATCATTAGGCGGTATATG-TGGTCGAAAGCG-TCCACTCTCTTTAA-TAAACTT-ATGAACGCATCT--AATTA-A--ATGTTCATTAT-GTTCTTGCTTTAA--------TTCGGTGTTTCCATACAAGATAATGTTTATATTAAGCGGGT-GANAGTTTCTTGTAGATTGAAAAAGTTGG
gi|1 : ATTT-TA-TTGCCATA------T-A-TATATATA----TA----CGGGTAA---CAAGACCTTACAACGTTA--GTTACGACCATTATCTAAATACAATAATGCATAGAATT---------AATGTAT--GGC-T-AACC--ATACTATTAG-------AA-----AGTTCAAGTATTCTT-------CAAATTCAGTACC------------------TTCGCTAAACA---------TTATA-----------CAATGTGCA--TG-TA------AATAGTGAGAAGAATAAATAAATAA-AGT---AC-AAAAGGCTTAATACAT---AG-A
gi|10 : gtatgtagtgagtattaacgtattaccatcctgtgtgtgagatattcttacagtctgatcaggcaaacatacacaaacatgtctaaatattattatttgaaaagtccaaatatgcttaaatttttgcactttcgagaaaaatggcaacattttataaatttggaaatatttaagaaacgctaaattatgattgaaatatatgtcaccttctccgcataactatgtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttttatttatttctacacattttcatataattattgaatcatttgttatataaatagtatcatgtatcctcaagggtctcagggccatctggaatttttgtgaataaaacatatataaaaacatTAATTTT-TTAAA-TAAATGTAATGCTTAAGCGAACGCAAACATATTCTCTGAATA---------GCATA-----------CACTGTACA--TG-TA------AACACTGGGAAGAATGAGTAA--AGGATT---GC-GAAATGCTTAGTACAT---TG-ATCAA-ACAGAGGA-------------TA-AACAGTAATTTGA-AAA-GATAATAGTGG-------AAAGATAGAAAAG-AA-GATG---ATATATAC-ATATACAT-------------CAT-GCTCTGTAA-----CATTAGTCATTAGGTTGTTTATG-TGGGAGAAAGCG-TCCACTCTCTTTAA--AAATTC-ATGTATGCATCT--AATTA-A--ATATTCATTAT-ATTCTTGCTTTAA--------TTC
gi|11 : ATGCTTAAGCGAAAACAAAC-T-TTCTCAGAGTA---------GTATA-----------CAATATACA--TG-TA------AACACTGGGAAGATTAAGTAA--AG---T---AC-GAAATGCTTAGTACAT---TG-ATCAA-GCAGAGGA-------------TA-AACAGTAATTTGA-AAA-GATAATAGTGG-------AAAGATAGAAGAG-AA-TA------TATAAAC-ATGTACATGTCAACCAAACATCATTGCTCTGTAATTTAACATTAATCATTAGGCGGTAAATG-TGGTCGAAAGCG-TCCACTCTCTTTAA-TAAACTT-ATGAACGCATCT--ATTTA-A--ATGCTCATTAT-GTTCTTGCTTTAA--------TTCGGT
gi|12 : GCAT--GAC-T-AA-A--AGGTTATTATTTACATTAGTTTTTAGTT---ATATTTTT-ATAAA-TAAACACAATGCTTAAGGGAAAACAAACATACTTT
gi|12 : ATTCTGCGAATAC--------AT-TA-----------CAATATTCA--TG-TA------ATAACTAGGATGAATAAGTAA--A---------------TGCTTAGGATAT---TG-ACCAA-ACAGAGGA-------------TA-AACAGTAATTTGA-ATA-GATAACAGTGG-------AAAGATAGAAGAG-AC-GAAA---ATAAAAAC-ATGTACATGTCAACCAAACATCATTGCTCGGTGATgtcaaggacgtgtatagacgtctatgtaattccttgattctgcgaatacattacaatattcatgtaataactaggatgaataagtaaatgcttaggatattgaccaaacagaggataaacagtaatttgaatagataacagtggaaagatagaagagacgaaaataaaaacatgtacatgtcaaccaaacatcattgctcggtgatat
gi|13 : gcatgactaaaaggttattatttacattagtttttagttatatttttataaataaacacaatgcttaagggaaaacaaacatactttgtcaaggacgtgtatagacgtctatgtaattccttgGAAAACAAACATATTCTCTGAATA---------GTATA-----------CAATATACA--TG-TA------AACAATGGCAAGAATATGTAA--AG---T---GC-GAAATGCTTAGTTCAT---TG-ATCAA-ACAAAGGA-------------TA-AACAGTTATTTGA-AAA-AATAATAGTGG-------AAAGATAGAAGAG-AA-GA------TATATGC-ATGTACATGTCAACCAAACACCATTGCTCTGTAATTCATCATTAATCATTAGGCGGTATATG-TGGTCGAAAGCG-TCCACTCTATTTAA-TAAACTT-ATGAATGCATCC--AATTA-A--ATGTTTATTAT-GTTCTTGCTTTAA---------TCGGTat
gi|14 : -----------CAATATACACATG-TA------AACAATGGGAAGAATAAGTCA--AG---T---GC-GAAATGCTTAGTACAT---TG-ATCAA-GCAGAGGA----------------AACAGTGATTTGA-AAAAGATAATAGTGG-------AACGATA--------------------TATAC-ATGTACATGTCAACCAAACATCAATGCTCTGTAATTTAACATTAATCATTAGGCAGTATATA-TGGTCGAAAGTG-TCCACTCTGTTTAA-TAAACTT-ATGAACGCATCT--AACTACA--GTGT
gi|15 : ---------AATGTATTTGGT-T-TA-AGCATCATACTAT-------TA-----AATT---ATACTTTT-GAAAA-CAAATTTAATGCTTAAG---AAATAAAAATATTATGTGAGTA---------GTATA-----------CAAAATACG--TGCTATC----AATATT---AAAAATAAG------G-A---------------TTATTACGTTG-TG-AT-AA-A-AGATGA-------------TT-AA---TATTTCGT-AAA-GATCAGAACGA-------GAATATGGAAGAA-AG-GTG-----TCT-TGCTGTGTA-ATGT-AAC-------------------ATTTAA-------TATTAGGCGTTATGTG-TGGTCAAAGGCGATCTTCTCT-TTTAA-aaccacaggcaatatttttagagttttatttggt
gi|16 : ctgATTT-TA-TTGCCATA------A-A--------A----TTGGGTCGATTCT---CAAGTTGTTACAAACTTG--GTATTGACCCTGCCCTAAATACAATATTACATATAATT---------AATGCAT--TGC-T-AA-A--AAATAATTAG-------AA-----AGTaa
gi|16 : tctaatCATGTCAGCCAAACATCTTTTCTCTGTGATTTAACATTTATCATTAGGTGGCTTGTG-TGGTGGAAAGCA-TCCA--TTCTTTAA-CAAACTT-ATAAATGCATCT--TATTA-A--ATGTTCA-CAT-ATTTTTGCTTTAcgcatgtcagccaaacatcttttctctgtgatttaacatttatcattaggtggcttgtgtggtggaaagcatccattctttaacaaacttataaatgcatcttattaaatgttcacatatttttgcttta
gi|18 : tctaatattttattgccataaaattgggtcgattctcaagttgttacaaacttggtattgaccctgccctaaatacaatattacatataattaatgcattgctaaaaaataattagaaagtcgTTAACATTAATCATTAGGCGGTATATG-TGGTCGAAGGCG-TCCACTCTCTTTAA-TAAACTTAATG-ATGCATTT--AATTA-A--ATGTTCATTAT-GTTCTTGCTTTAA--------TTCGGTGTTTCCATACAAGATAATGTTTATATTACGCGGTT-GAAAGTTTCTTGTAGATTG--AAAGTTGG
gi|19 : aTA-----------CAATATACA--TT-TA------AACAATAAGAAGAAGAAATAA--AG-AGTTGTGC----ATGCTTTATACGT---AG-ATCAA-ACAGAAGACAAATTGTGACGATA-AATAGCATTTCAT-AAT-GATAAGAGTGGGAAGTGGAAAAATGGATGGC-AT-GAGA---actttttgagttgtcaatcta
gi|2 : CATTT-TAATTACCATA------A-A-TATACA-A----TTGGGTCTGGTCA---CACGTTCTTATAATGTTA--GTTATGACTCTTCCCTGAATACAATATTACATAGCTTT---------AATACAT--GGC-T-TA-A--GTGACTTTAC-------AA-----AGTT---ATATTTTTTATAAA-CAAATACAATGCTTAAGCGAAAACAAACATATTTTCTGAATA---------GTATA-----------CAATGTACA--TG-TA------AACACTGGGAAGATTAAATAA--AG-AGGA--GC-GAAATGCTTGGTGCAT---TG-ATCAA-ACAGAATA-------------TA-AAAAGTATTTCGA-AAA-GATAAAAGTGG-------AAAGACAGAAGAG-AA-AAAAGACATATATAC-ATGTACATGTCAACCAAACGTCATTGCTCTGTGGTTTAACATTAATCGTTTGATGGAATATG-TGGTTGAAAGCG-TCCAGTTTATATAA-TAAACTT-ATGAACGCATAT--AATTA-A--ATGTTCATTAT-GTTCATGCTTTAA--------TTCGGTTTTTCCATACAAGATAATGTTAATGTTGAATGGGTAAAAAAATTCTTGTAGACTGAAAACGTTGGtaaaagttagccgaacagtaacactctacgat
gi|20 : -AGT---GC-GAAATTCTTGGTATAT---TGTATT---------GA-------------TA-----GTATTTCGA-AAA-GATGGAAGTGG-------AAAGACAGAAGAG-AA-GGAG---ATAT-------GTATATGTCAGTTAAACATCATTGCTCTGTGATTTAACATTAATCATTAGGTAGTATGTG-TGGTCGAAAGCG-TTAAATCTCTTAAAGTAA
gi|21 : agaATTTATA-TTGCCATATACAC-ACA-CACACA-C----TTGGGTCGAGTCA---CACGTTCTTACA-C-TTAAAGTTACGATCCTTCACTA----CAATATTACATAGAACT---------GATGCAG--GGC-T-AG-A--ACGTTATTAG-------AG-----AGTT---ATATTTTT-ATAAA-CAAAT
gi|22 : aacatGCTTAGTACAT---TG-ATCAA-GCAGAGGA-------------TA-AACAGTAATTTGA-AAA-GATAATAGTGG-------AAAGATAGAAAAG-AA-GA------TATGTAC-ATGTACATGTCAACCAAACATCATTGCTCTGTAATTTAACATTAATCATTAGGCGGTATATG-TGGTC
gi|23 : TTAG-------AA-----AGTT---ATACTTTT-ATAAA-CAAATACAATGCTTAAGCGAAAACAAACATATTCTCTGAATT---------GTATA-----------CAATATTCA--TG-TA------AACAATGGGGAGAATAAATAA-----AGT---GC-GAAATGCTTAGTACAT---TG-ATCAA-
gi|24 : AT-GTTCTTACTTTAA--------TTCAGTGTGTCCATACAAAATAATGTTTATATTGAGTGAGT-GATAAGTTCTTGTTGATTGAAAAAGTTGG
gi|25 : TCTGTCATCTAACATTAATTATAAGCTGGCAAATA-CGGTCGAAA------TA------TTGA-TAGAAAT-GTGAACACATCT--GAATA-T--ATATGCATTGT-actctttgagttgtgaatcta
gi|26 : gtcgcgT---GC-GAAA-----AGTACAT---TG-ATAAA-ACAGAAGA-------------CT-TAGAGTATTTCGA-AAT-GATGAGAGTTG-------AAAGGTAGACGAG-AATGAG----ATATTTAC-ATGTA
gi|27 : TACA-A----TTGTGTTGGGTCA---C------TTAGAATGCTA--GCTACAACCCTTCCCTAAATACAATAGTACGTAGAATA---------AATGCAC--GAC-
gi|28 : ccCTTAGTACAT---TG-ATCAA-GCAGAGGA-------------TA-AACAGTAATTTGA-AAA-GATAATAGTGG-------AAAGATAGAAGAG-AA----A---ATATATAC-ATatg
gi|29 : aA-TTGCCATATAAACTA-G-TATACA-A----TTAGGTTTGGTCACATCAAGATCTCACAACATTA--GTCACAATTCTTC
gi|3 : taATTT-TA-TTGCCACA------T-A-CATACA-C----TTGGGTCGGGTCA---CAAGCTCTTACAACGTAA--CTGACGACTCTTCCCTGAATACACTAGTACATAGAATT---------AAAACAT--GGA-TAAA-A--AAGTTATTGG-------AA-----AGTC---CTGCTTTT--TAAATCAAATCAAATGCTTAAGCGTAAACCAGCACATT------ATAC--------GTAAA-----------AAATGTACA--CG-CA------GACA--GTGAAGTAT---TAA--AG-AGT---TG-GAAAGGCTTCGTATAT---AG-ACTAATAC-GAAGA-------------TAGGAC--TAGGT-GATAAA-GATATGGGAGG-------GAAGACAGAAGAGCAG-GAGA---------------TACCTGTCAGTCGAGTA-----GC-------TTTAACATGAAATATTAGTTGGTACGTA-TTGTTGAAAGCC-ACCACTATCTTTAA-TAAAAGC-ACGAACGCATCT--GAATA-GGCATATTC--TAT-GTac
gi|31 : cctCA---GAAGTTCTAACAGCATTA--GTTACGACCCTTCCCTAAATACAGTATTACattcaattatagtattctttcagaaattactaagaaaattatgattcagatgatcttacaaaaattttgta
gi|32 : ttgT---GC-GACATGCTTAGTACAA---TG-ATTAA-ACAGAAAG-------------TC-AATAGTATTTTGA-AA
gi|33 : ATTT-TA-TTGCCACA------C-A-TATACA-A----TTGGGTC-GGTCG---CAA
gi|4 : atCATTG-TA-TTGGTTTA------A-AATATACA-A----TTTGGTCGGGTCA---CAAATTCTTACAACGTAA--GTTAAGACCCTTTTCTAAA-ACACAATTAACTAAAACT---------AAGGCAT--GGC-T-AA-A--A-GTTTTCAG-------AA-----AGTT---ATAACTTT-ATAAA-CAAATAAAATGCTTAAGCGAAAACAAACGTATTATCTAAAAA---------GAATA-----------CAATATACA--TG-TT------ATCACTGAGAAGAATAAGTAA--AGAAGT---AC-GAAATGCTTATTGCATAAACA-ATTAA-AC
gi|5 : aagcgtatataattattaTCCTTACAACGTTA--GTTACGACTCTTCCC-------------------AATT---------TATGTAT--GGCGT-AA-C--A-GGTATTAA-------GA-----CGTC---ATGCTTTT-TTAAAACAAATTCAAAGATTAAGCAAAACCTAACATATTATTTGAACATATATGTAGGTATATGCATGCATATCGATGTACA--TA-TATTGTATAACAATGTGAGGAATATGCAA--TG-AGT---TTTGAAATAATTAGTATA-----G-ATCGA-ACAGAAGA-------------CG-AAAAGTAGTTTGT-AAA-TATTAGAGTGG-------AAAGATTGAAAGG-CA-GTGA---ATAT-----ATGTA-AT-TTAACC--------TT--------------CATT----ATTAGCT--TGTATGCTGATCGAAAGCG-ATGA-TTTTTTTAA-TAAA-GT-ATAAACGCATCCGAAATAA-A--ATGTT-GTTTTAGTTCTTGTTTTAAACGGCGAGTTCA--GTTTTAATACATGTTTTTGTATATATgattcgagttcttacaatactatatattttaaatgaaagtaacctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaagaactatttatatcaaagatataataacatgactgtgtagtccgacgaccaataacaaatgcaatgacgaagtgtaccagtcacca
gi|6 : TATTAG-------AA-----AGTT---ATACTTTT-ATGAA-CAAAAGCAATGCTTAATCGAAAATAAAGATGTTCTCTGAATA---------GTATA-----------CAATATACA--TG-TA------AACACTGGGAAG------TAA--AG---T---GT-GAAATGCTTAGTACAT---TG-ATCAA-ACGAATGA-------------TA-AATAGTAATTTGA-AAA-GATAGTAGTGG-------AAAGATAGAAGAG-AA-GAAG---ATATATAA-ATGTACATGTTAAACAAACATCATTGCTCTGTAATTTAACATTAATTATTAGGCGGTATATG-TGGTCGAATACG-TCCACTTTCTTT-A-TGAACGT-ATGAACGCATCT--AATTA-A--ATATTCATTAT-GTTCTTGCTTTAA--------TTCGGTGTTTCCATACAAGATAATGTTTATATTAAGCGGTT-GAGAGTTTCTTGTAGATTGAAAAACTTGG
gi|7 : ACA--TG-CA------AACACTTGGAAGAATATCTAA--AG-AATA--GC-AAAATGCTGAGTACGT---TC-ATCAA-ACAGAAGA-------------TA-AATAGTATTTTGA-AAA-GATAATAACGT-------AAAGGTAGTAGAA-AAAGAAG---ATATATAC-ATGTGCATGTCAACCAAACAGCATTGCTCTGAGATTTACTATTAATCATTATGTCGTATGTG-CAATCGAAAGCG-TCAACTATCTTTAA-TAAACTT-CTGAAAGTTTCT--AATAA-A--ATGTGCATCAT-GTTCTTGTTTTGA--------TTCGGTGTTTCGATACAAGATAATGTTTATCTAAAACGGGT-GATATTTTCTTGTATATTGAAAAGGTTGactctttgagttgtgaatct
gi|8 : A--GTTACGACCCTTCCCTAAATACAATATTACATAAAGTT---------AATGCAT--GGC-T-AA-A--ATGTTGTTAG-------AA-----ATTT---ATACCTTT-ATAAA-CAAATACAATGCTTAAGCGAAAACAAACATATTCTCTGAAGA---------GTATA-----------CAATATACA--TG-TA------AACACTGGGAAGAATATGTAA-----AGT---GC-CAAATACTTAGTACAT---TG-CTCAA-ACAGAGGA-------------TA-AACAGTAATTTGA-AAA-GATAATAGTGG-------AAAGATAGAAGGG-AA----C---ATATATGC-ATGTACATGTCAACCGAACATCATTGCTCTGTAATTTAACATTAATCATTAGGTGGTACATA-TGGTCagtttgaatcta
gi|9 : TGCCA--------A-A-TATAAA-AAAAATTTGATTGGAACA---AAAGTTCTGGCAAAGCTA--GTTACGACCCTTGCCTAAATACTATACTACGTAGACTCGTGGAAAGAAAAAAAT--G-C-T-AA-AC-AT-TTATTAG-------AA-----AGTT---ATGCATTT-ATAAA-CAAAATCAATGCATTATTGAAAGCAAACACATTCTCTAAACA---------GTATA-----------GAATGTACA--TG-TA------AACACTGTGAAAAATAAACAA--AG-AAT---CC-G--------------T---TA-AGTAA-AGAGAAGA-------------TA-AAAAGAAGTATAC-AAA-AATTAGAGCGG-------AAAGATAGAAG------------------TAA-ATG--------AACT--ACG-CATTGCTCTGTAATTT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TACGACAAACATATACAATACCATAACAAGCATAGATAATGAGTACATTGTACAAGCTATTTAACGATTAAAATTCTTACAATAATATAAATTTATAATGACATTAACCTGTAATAATAATTAAGAGCTATGTATATCAAAGATATCGTATTATATAGTTTCAATGCAGTCTAATAAAAAAAACAAGACTATGTTGTCCGGCGACTGATGGCGAATGCAATGAAGCATTTTACCTGTCACAAG
Unaligned ( gi|30 ): GTATTACCATCCTGTACGCGAGATATACTTTTTCTTACAGCTTGAACATATCCAAATATCTTTAAAT
Alignments
lowQualScore : 22222222 111111111 1111111 111111111 11111111111 111111 111111 11111111111111 333333333 11111111
lowQualScore : 5 5 77777777 4 4 8888 1 666 44 1 666666666 3 4 4 3 5 0000000 77777 555 66 6 1 0 777777777 11111111111 33 2 000000 2 33 444444 4 2 555 1 1 22222222222222 2 2 1 3 2 2 1 2 222222222 4 2 2 4 1 2 2 4 1 2 3 44 3 44 3 66666666 8 1 22 0
lowQualScore : . . ........ . . .... . ... .. . ......... . . . . . ....... ..... ... .. . . . ......... ........... .. . ...... . .. ...... . . ... . . .............. . . . . . . . . ......... . . . . . . . . . . . .. . .. . ........ . . .. .
lowQualScore : 7 0 88888888 4 0 5555 6 444 66 3 000000000 6 0 0 6 9 0000000 77777 888 88 2 0 5 111111111 99999999999 22 4 000000 7 22 444444 0 0 777 8 9 33333333333333 1 6 0 6 1 2 0 4 666666666 9 4 0 1 1 5 9 3 9 9 3 66 3 66 3 11111111 0 0 44 8
consensus : CATTT-TA-TTGCCATA------A-A-TATACA-A----TTGGGTCGGGTCA---CAAGTTCTTACAACGTTA--GTTACGACCCTTCCCTAAATACAATATTACATAGAATT---------AATGCATGGC-T-AA-A-ANGTTATTAG-------AA-----AGTT---ATACTTTT-ATAAA-CAAATNCAATGCTTAAGCGAAAACAAACATATTCTCTGAATA---------GTATA-----------CAATATACA--TG-TA------AACACTGGGAAGAATAAGTAA--AG-A---GT-GC-GAAATGCTTAGTACAT---TG-ATCAA-ACAGAG-------------GATA-AACAGTANTTCGA-AAA-GATAANAGTGGAAAGATAGAAGAG-AA-GAGG---ATATATAC-ATGTACATGTCAACCAAACATCATTGCTCTGTAATTTAACATTAATCATTAGGCGGTATATG-TGGTCGAAAGCG-TCCACTCTCTTTAA-TAAACTT-ATGAACGCATCT--AATTA-A--ATGTTCATTAT-GTTCTTGCTTTAA--------TTCGGTGTTTCCATACAAGATAATGTTTATATTAAGCGGGT-GANAGTTTCTTGTAGATTGAAAAAGTTGG
Reference ( family-768 ) : CATTT-TA-TTGCCATA------A-A-TATACA-A----TTGGGTCGGGTCA---CAAGTTCTTACAACGTTA--GTTACGACCCTTCCCTAAATACAATATTACATAGAATT---------AATGCATGGC-T-AA-A-ATGTTATTAG-------AA-----AGTT---ATACTTTT-ATAAA-CAAATNCAATGCTTAAGCGAAAACAAACATATTCTCTGAATA---------GTATA-----------CAATATACA--TG-TA------AACACTGGGAAGAATAAGTAA--AG-A---GT-GC-GAAATGCTTAGTACAT---TG-ATCAA-ACAGAG-------------GATA-AACAGTANTTCGA-AAA-GATAANAGTGGAAAGATAGAAGAG-AA-GAGA---ATATATAC-ATGTACATGTCAACCAAACATCATTGCTCTGTAATTTAACATTAATCATTAGGCGGTATATG-TGGTCGAAAGCG-TCCACTCTCTTTAA-TAAACTT-ATGAACGCATCT--AATTA-A--ATGTTCATTAT-GTTCTTGCTTTAA--------TTCGGTGTTTCCATACAAGATAATGTTTATATTAAGCGGGT-GANAGTTTCTTGTAGATTGAAAAAGTTGG
gi|1 : ATTT-TA-TTGCCATA------T-A-TATATATA----TA----CGGGTAA---CAAGACCTTACAACGTTA--GTTACGACCATTATCTAAATACAATAATGCATAGAATT---------AATGTATGGC-T-AACC-ATACTATTAG-------AA-----AGTTCAAGTATTCTT-------CAAATTCAGTACC------------------TTCGCTAAACA---------TTATA-----------CAATGTGCA--TG-TA------AATAGTGAGAAGAATAAATAAATAA-A---GT-AC-AAAAGGCTTAATACAT---AG-A
gi|10 : gtatgtagtgagtattaacgtattaccatcctgtgtgtgagatattcttacagtctgatcaggcaaacatacacaaacatgtctaaatattattatttgaaaagtccaaatatgcttaaatttttgcactttcgagaaaaatggcaacattttataaatttggaaatatttaagaaacgctaaattatgattgaaatatatgtcaccttctccgcataactatgtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttttatttatttctacacattttcatataattattgaatcatttgttatataaatagtatcatgtatcctcaagggtctcagggccatctggaatttttgtgaataaaacatatataaaaacatTAATTTT-TTAAA-TAAATGTAATGCTTAAGCGAACGCAAACATATTCTCTGAATA---------GCATA-----------CACTGTACA--TG-TA------AACACTGGGAAGAATGAGTAA--AGGA---TT-GC-GAAATGCTTAGTACAT---TG-ATCAA-ACAGAG-------------GATA-AACAGTAATTTGA-AAA-GATAATAGTGGAAAGATAGAAAAG-AA-GATG---ATATATAC-ATATACAT-------------CAT-GCTCTGTAA-----CATTAGTCATTAGGTTGTTTATG-TGGGAGAAAGCG-TCCACTCTCTTTAA--AAATTC-ATGTATGCATCT--AATTA-A--ATATTCATTAT-ATTCTTGCTTTAA--------TTC
gi|11 : ATGCTTAAGCGAAAACAAAC-T-TTCTCAGAGTA---------GTATA-----------CAATATACA--TG-TA------AACACTGGGAAGATTAAGTAA--AG------T-AC-GAAATGCTTAGTACAT---TG-ATCAA-GCAGAG-------------GATA-AACAGTAATTTGA-AAA-GATAATAGTGGAAAGATAGAAGAG-AA-TA------TATAAAC-ATGTACATGTCAACCAAACATCATTGCTCTGTAATTTAACATTAATCATTAGGCGGTAAATG-TGGTCGAAAGCG-TCCACTCTCTTTAA-TAAACTT-ATGAACGCATCT--ATTTA-A--ATGCTCATTAT-GTTCTTGCTTTAA--------TTCGGT
gi|12 : GCATGAC-T-AA-A-AGGTTATTATTTACATTAGTTTTTAGTT---ATATTTTT-ATAAA-TAAACACAATGCTTAAGGGAAAACAAACATACTTT
gi|12 : ATTCTGCGAATAC--------AT-TA-----------CAATATTCA--TG-TA------ATAACTAGGATGAATAAGTAA--A----------------TGCTTAGGATAT---TG-ACCAA-ACAGAG-------------GATA-AACAGTAATTTGA-ATA-GATAACAGTGGAAAGATAGAAGAG-AC-GAAA---ATAAAAAC-ATGTACATGTCAACCAAACATCATTGCTCGGTGATgtcaaggacgtgtatagacgtctatgtaattccttgattctgcgaatacattacaatattcatgtaataactaggatgaataagtaaatgcttaggatattgaccaaacagaggataaacagtaatttgaatagataacagtggaaagatagaagagacgaaaataaaaacatgtacatgtcaaccaaacatcattgctcggtgatat
gi|13 : gcatgactaaaaggttattatttacattagtttttagttatatttttataaataaacacaatgcttaagggaaaacaaacatactttgtcaaggacgtgtatagacgtctatgtaattccttgGAAAACAAACATATTCTCTGAATA---------GTATA-----------CAATATACA--TG-TA------AACAATGGCAAGAATATGTAA--AG------T-GC-GAAATGCTTAGTTCAT---TG-ATCAA-ACAAAG-------------GATA-AACAGTTATTTGA-AAA-AATAATAGTGGAAAGATAGAAGAG-AA-GA------TATATGC-ATGTACATGTCAACCAAACACCATTGCTCTGTAATTCATCATTAATCATTAGGCGGTATATG-TGGTCGAAAGCG-TCCACTCTATTTAA-TAAACTT-ATGAATGCATCC--AATTA-A--ATGTTTATTAT-GTTCTTGCTTTAA---------TCGGTat
gi|14 : -----------CAATATACACATG-TA------AACAATGGGAAGAATAAGTCA--AG------T-GC-GAAATGCTTAGTACAT---TG-ATCAA-GCAGAG-------------GA---AACAGTGATTTGA-AAAAGATAATAGTGGAACGATA--------------------TATAC-ATGTACATGTCAACCAAACATCAATGCTCTGTAATTTAACATTAATCATTAGGCAGTATATA-TGGTCGAAAGTG-TCCACTCTGTTTAA-TAAACTT-ATGAACGCATCT--AACTACA--GTGT
gi|15 : -ATACTATTAA-------A--------TT---ATACTTTT-GAAAA-CAAATTTAATGCTTAAG---AAATAAAAATATTATGTGAGTA---------GTATA-----------CAAAATACG--TGCTATC----AATATT---AAAAATAAG------G-A----------------TTATTACGTTG-TG-AT-AA-A-AGAT-------------GATT-AA---TATTTCGT-AAA-GATCAGAACGAGAATATGGAAGAA-AG-GTG-----TCT-TGCTGTGTA-ATGT-AAC-------------------ATTTAA-------TATTAGGCGTTATGTG-TGGTCAAAGGCGATCTTCTCT-TTTAA-aaccacaggcaatatttttagagttttatttggt
gi|16 : ctgaatgtatttggtttaagcatcATTT-TA-TTGCCATA------A-A--------A----TTGGGTCGATTCT---CAAGTTGTTACAAACTTG--GTATTGACCCTGCCCTAAATACAATATTACATATAATT---------AATGCATTGC-T-AA-A-AAATAATTAG-------AA-----AGTaa
gi|16 : tctaatCATGTCAGCCAAACATCTTTTCTCTGTGATTTAACATTTATCATTAGGTGGCTTGTG-TGGTGGAAAGCA-TCCA--TTCTTTAA-CAAACTT-ATAAATGCATCT--TATTA-A--ATGTTCA-CAT-ATTTTTGCTTTAcgcatgtcagccaaacatcttttctctgtgatttaacatttatcattaggtggcttgtgtggtggaaagcatccattctttaacaaacttataaatgcatcttattaaatgttcacatatttttgcttta
gi|18 : tctaatattttattgccataaaattgggtcgattctcaagttgttacaaacttggtattgaccctgccctaaatacaatattacatataattaatgcattgctaaaaaataattagaaagtcgTTAACATTAATCATTAGGCGGTATATG-TGGTCGAAGGCG-TCCACTCTCTTTAA-TAAACTTAATG-ATGCATTT--AATTA-A--ATGTTCATTAT-GTTCTTGCTTTAA--------TTCGGTGTTTCCATACAAGATAATGTTTATATTACGCGGTT-GAAAGTTTCTTGTAGATTG--AAAGTTGG
gi|19 : aTA-----------CAATATACA--TT-TA------AACAATAAGAAGAAGAAATAA--AG-AGTTGT-GC----ATGCTTTATACGT---AG-ATCAA-ACAGAAGACAAATTGTGACGATA-AATAGCATTTCAT-AAT-GATAAGAGTGGGAAG-TGGAAAAactttttgagttgtcaatcta
gi|2 : CATTT-TAATTACCATA------A-A-TATACA-A----TTGGGTCTGGTCA---CACGTTCTTATAATGTTA--GTTATGACTCTTCCCTGAATACAATATTACATAGCTTT---------AATACATGGC-T-TA-A-GTGACTTTAC-------AA-----AGTT---ATATTTTTTATAAA-CAAATACAATGCTTAAGCGAAAACAAACATATTTTCTGAATA---------GTATA-----------CAATGTACA--TG-TA------AACACTGGGAAGATTAAATAA--AG-A---GGAGC-GAAATGCTTGGTGCAT---TG-ATCAA-ACAGAA-------------TATA-AAAAGTATTTCGA-AAA-GATAAAAGTGGAAAGACAGAAGAG-AA-AAAAGACATATATAC-ATGTACATGTCAACCAAACGTCATTGCTCTGTGGTTTAACATTAATCGTTTGATGGAATATG-TGGTTGAAAGCG-TCCAGTTTATATAA-TAAACTT-ATGAACGCATAT--AATTA-A--ATGTTCATTAT-GTTCATGCTTTAA--------TTCGGTTTTTCCATACAAGATAATGTTAATGTTGAATGGGTAAAAAAATTCTTGTAGACTGAAAACGTTGGatggatggcatgagataaaagttagccgaacagtaacactctacgat
gi|20 : -A---GT-GC-GAAATTCTTGGTATAT---TGTATT----------------------GATA-----GTATTTCGA-AAA-GATGGAAGTGGAAAGACAGAAGAG-AA-GGAG---ATAT-------GTATATGTCAGTTAAACATCATTGCTCTGTGATTTAACATTAATCATTAGGTAGTATGTG-TGGTCGAAAGCG-TTAAATCTCTTAAAGTAA
gi|21 : agaATTTATA-TTGCCATATACAC-ACA-CACACA-C----TTGGGTCGAGTCA---CACGTTCTTACA-C-TTAAAGTTACGATCCTTCACTA----CAATATTACATAGAACT---------GATGCAGGGC-T-AG-A-ACGTTATTAG-------AG-----AGTT---ATATTTTT-ATAAA-CAAAT
gi|22 : aacatGCTTAGTACAT---TG-ATCAA-GCAGAG-------------GATA-AACAGTAATTTGA-AAA-GATAATAGTGGAAAGATAGAAAAG-AA-GA------TATGTAC-ATGTACATGTCAACCAAACATCATTGCTCTGTAATTTAACATTAATCATTAGGCGGTATATG-TGGTC
gi|23 : TTAG-------AA-----AGTT---ATACTTTT-ATAAA-CAAATACAATGCTTAAGCGAAAACAAACATATTCTCTGAATT---------GTATA-----------CAATATTCA--TG-TA------AACAATGGGGAGAATAAATAA-----A---GT-GC-GAAATGCTTAGTACAT---TG-ATCAA-
gi|24 : AT-GTTCTTACTTTAA--------TTCAGTGTGTCCATACAAAATAATGTTTATATTGAGTGAGT-GATAAGTTCTTGTTGATTGAAAAAGTTGG
gi|25 : TCTGTCATCTAACATTAATTATAAGCTGGCAAATA-CGGTCGAAA------TA------TTGA-TAGAAAT-GTGAACACATCT--GAATA-T--ATATGCATTGT-actctttgagttgtgaatcta
gi|26 : gtcgcgT-GC-GAAA-----AGTACAT---TG-ATAAA-ACAGAA-------------GACT-TAGAGTATTTCGA-AAT-GATGAGAGTTGAAAGGTAGACGAG-AATGAG----ATATTTAC-ATGTA
gi|27 : TACA-A----TTGTGTTGGGTCA---C------TTAGAATGCTA--GCTACAACCCTTCCCTAAATACAATAGTACGTAGAATA---------AATGCACGAC-
gi|28 : ccCTTAGTACAT---TG-ATCAA-GCAGAG-------------GATA-AACAGTAATTTGA-AAA-GATAATAGTGGAAAGATAGAAGAG-AA----A---ATATATAC-ATatg
gi|29 : aA-TTGCCATATAAACTA-G-TATACA-A----TTAGGTTTGGTCACATCAAGATCTCACAACATTA--GTCACAATTCTTC
gi|3 : taATTT-TA-TTGCCACA------T-A-CATACA-C----TTGGGTCGGGTCA---CAAGCTCTTACAACGTAA--CTGACGACTCTTCCCTGAATACACTAGTACATAGAATT---------AAAACATGGA-TAAA-A-AAGTTATTGG-------AA-----AGTC---CTGCTTTT--TAAATCAAATCAAATGCTTAAGCGTAAACCAGCACATT------ATAC--------GTAAA-----------AAATGTACA--CG-CA------GACA--GTGAAGTAT---TAA--AG-A---GT-TG-GAAAGGCTTCGTATAT---AG-ACTAATAC-GAA-------------GATAGGAC--TAGGT-GATAAA-GATATGGGAGGGAAGACAGAAGAGCAG-GAGA---------------TACCTGTCAGTCGAGTA-----GC-------TTTAACATGAAATATTAGTTGGTACGTA-TTGTTGAAAGCC-ACCACTATCTTTAA-TAAAAGC-ACGAACGCATCT--GAATA-GGCATATTC--TAT-GTac
gi|31 : cctCA---GAAGTTCTAACAGCATTA--GTTACGACCCTTCCCTAAATACAGTATTACattcaattatagtattctttcagaaattactaagaaaattatgattcagatgatcttacaaaaattttgta
gi|32 : ttgT-GC-GACATGCTTAGTACAA---TG-ATTAA-ACAGAA-------------AGTC-AATAGTATTTTGA-AA
gi|33 : ATTT-TA-TTGCCACA------C-A-TATACA-A----TTGGGTC-GGTCG---CAA
gi|4 : atCATTG-TA-TTGGTTTA------A-AATATACA-A----TTTGGTCGGGTCA---CAAATTCTTACAACGTAA--GTTAAGACCCTTTTCTAAA-ACACAATTAACTAAAACT---------AAGGCATGGC-T-AA-A-A-GTTTTCAG-------AA-----AGTT---ATAACTTT-ATAAA-CAAATAAAATGCTTAAGCGAAAACAAACGTATTATCTAAAAA---------GAATA-----------CAATATACA--TG-TT------ATCACTGAGAAGAATAAGTAA--AGAA---GT-AC-GAAATGCTTATTGCATAAACA-ATTAA-AC
gi|5 : aagcgtatataattattaTCCTTACAACGTTA--GTTACGACTCTTCCC-------------------AATT---------TATGTATGGCGT-AA-C-AGGT-ATTAA-------GA-----CGTC---ATGCTTTT-TTAAAACAAATTCAAAGATTAAGCAAAACCTAACATATTATTTGAACATATATGTAGGTATATGCATGCATATCGATGTACA--TA-TATTGTATAACAATGTGAGGAATATGCAA--TG-A---GT-TTTGAAATAATTAGTATA-----G-ATCGA-ACAGAA-------------GACG-AAAAGTAGTTTGT-AAA-TATTAGAGTGGAAAGATTGAAAGG-CA-GTGA---ATAT-----ATGTA-AT-TTAACC--------TT--------------CATT----ATTAGCT--TGTATGCTGATCGAAAGCG-ATGA-TTTTTTTAA-TAAA-GT-ATAAACGCATCCGAAATAA-A--ATGTT-GTTTTAGTTCTTGTTTTAAACGGCGAGTTCA--GTTTTAATACATGTTTTTGTATATATgattcgagttcttacaatactatatattttaaatgaaagtaacctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaagaactatttatatcaaagatataataacatgactgtgtagtccgacgaccaataacaaatgcaatgacgaagtgtaccagtcacca
gi|6 : TATTAG-------AA-----AGTT---ATACTTTT-ATGAA-CAAAAGCAATGCTTAATCGAAAATAAAGATGTTCTCTGAATA---------GTATA-----------CAATATACA--TG-TA------AACACTGGGAAG------TAA--AG------T-GT-GAAATGCTTAGTACAT---TG-ATCAA-ACGAAT-------------GATA-AATAGTAATTTGA-AAA-GATAGTAGTGGAAAGATAGAAGAG-AA-GAAG---ATATATAA-ATGTACATGTTAAACAAACATCATTGCTCTGTAATTTAACATTAATTATTAGGCGGTATATG-TGGTCGAATACG-TCCACTTTCTTT-A-TGAACGT-ATGAACGCATCT--AATTA-A--ATATTCATTAT-GTTCTTGCTTTAA--------TTCGGTGTTTCCATACAAGATAATGTTTATATTAAGCGGTT-GAGAGTTTCTTGTAGATTGAAAAACTTGG
gi|7 : ACA--TG-CA------AACACTTGGAAGAATATCTAA--AG-A---ATAGC-AAAATGCTGAGTACGT---TC-ATCAA-ACAGAA-------------GATA-AATAGTATTTTGA-AAA-GATAATAACGTAAAGGTAGTAGAA-AAAGAAG---ATATATAC-ATGTGCATGTCAACCAAACAGCATTGCTCTGAGATTTACTATTAATCATTATGTCGTATGTG-CAATCGAAAGCG-TCAACTATCTTTAA-TAAACTT-CTGAAAGTTTCT--AATAA-A--ATGTGCATCAT-GTTCTTGTTTTGA--------TTCGGTGTTTCGATACAAGATAATGTTTATCTAAAACGGGT-GATATTTTCTTGTATATTGAAAAGGTTGactctttgagttgtgaatct
gi|8 : A--GTTACGACCCTTCCCTAAATACAATATTACATAAAGTT---------AATGCATGGC-T-AA-A-ATGTTGTTAG-------AA-----ATTT---ATACCTTT-ATAAA-CAAATACAATGCTTAAGCGAAAACAAACATATTCTCTGAAGA---------GTATA-----------CAATATACA--TG-TA------AACACTGGGAAGAATATGTAA-----A---GT-GC-CAAATACTTAGTACAT---TG-CTCAA-ACAGAG-------------GATA-AACAGTAATTTGA-AAA-GATAATAGTGGAAAGATAGAAGGG-AA----C---ATATATGC-ATGTACATGTCAACCGAACATCATTGCTCTGTAATTTAACATTAATCATTAGGTGGTACATA-TGGTCagtttgaatcta
gi|9 : TGCCA--------A-A-TATAAA-AAAAATTTGATTGGAACA---AAAGTTCTGGCAAAGCTA--GTTACGACCCTTGCCTAAATACTATACTACGTAGACTCGTGGAAAGAAAAAAATG-C-T-AA-ACAT-TTATTAG-------AA-----AGTT---ATGCATTT-ATAAA-CAAAATCAATGCATTATTGAAAGCAAACACATTCTCTAAACA---------GTATA-----------GAATGTACA--TG-TA------AACACTGTGAAAAATAAACAA--AG-A---AT-CC-G--------------T---TA-AGTAA-AGAGAA-------------GATA-AAAAGAAGTATAC-AAA-AATTAGAGCGGAAAGATAGAAG------------------TAA-ATG--------AACT--ACG-CATTGCTCTGTAATTT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TACGACAAACATATACAATACCATAACAAGCATAGATAATGAGTACATTGTACAAGCTATTTAACGATTAAAATTCTTACAATAATATAAATTTATAATGACATTAACCTGTAATAATAATTAAGAGCTATGTATATCAAAGATATCGTATTATATAGTTTCAATGCAGTCTAATAAAAAAAACAAGACTATGTTGTCCGGCGACTGATGGCGAATGCAATGAAGCATTTTACCTGTCACAAG
Unaligned ( gi|30 ): GTATTACCATCCTGTACGCGAGATATACTTTTTCTTACAGCTTGAACATATCCAAATATCTTTAAAT
Alignments
lowQualScore : 22222222 111111111 1111111 111111111 11111111111 111111 1111111 1111111111111 22222222 11111111
lowQualScore : 5 5 77777777 4 4 8888 1 666 44 1 444444444 44 3 3 3 4 44 0000000 77777 555 66 6 1 0 777777777 11111111111 33 2 000000 2 33 2222222 2 555 1 1 0 1111111111111 2 2 1 3 2 2 1 7777777 99999999 4 2 2 4 1 2 2 4 1 2 3 44 3 44 3 66666666 8 1 22 0
lowQualScore : . . ........ . . .... . ... .. . ......... .. . . . . .. ....... ..... ... .. . . . ......... ........... .. . ...... . .. ....... . ... . . . ............. . . . . . . . ....... ........ . . . . . . . . . . . .. . .. . ........ . . .. .
lowQualScore : 7 0 88888888 4 0 5555 6 444 66 3 555555555 66 3 6 6 5 22 0000000 77777 888 88 2 0 5 111111111 99999999999 22 4 000000 7 22 7777777 0 777 8 9 7 6666666666666 1 6 0 6 1 2 0 2222222 88888888 9 4 0 1 1 5 9 3 9 9 3 66 3 66 3 11111111 0 0 44 8
consensus : CATTT-TA-TTGCCATA------A-A-TATACA-A----TTGGGTCGGGTCA---CAAGTTCTTACAACGTTA--GTTACGACCCTTCCCTAAATACAATATTACATAGAATT---------AATGCAT--GGC-T-AA-AANGTTAT--TAG-------AA-----AGTT---ATACTTTT-ATAAA-CAAATNCAATGCTTAAGCGAAAACAAACATATTCTCTGAATA---------GTATA-----------CAATATACA--TG-TA------AACACTGGGAAGAATAAGTAA--AG-AGT---GC-GAAATGCTTAGTACAT---TG-ATCAA-ACAGAGGA-------------TA-AACAGTANTTCGA-AAA-GATAANAGTGG-------AAAGATAGAAGAGAA-GAAG---ATATATAC-ATGTACATGTCAACCAAACATCATTGCTCTGTAATTTAACATTAATCATTAGGCGGTATATG-TGGTCGAAAGCG-TCCACTCTCTTTAA-TAAACTT-ATGAACGCATCT--AATTA-A--ATGTTCATTAT-GTTCTTGCTTTAA--------TTCGGTGTTTCCATACAAGATAATGTTTATATTAAGCGGGT-GANAGTTTCTTGTAGATTGAAAAAGTTGG
Reference ( family-768 ) : CATTT-TA-TTGCCATA------A-A-TATACA-A----TTGGGTCGGGTCA---CAAGTTCTTACAACGTTA--GTTACGACCCTTCCCTAAATACAATATTACATAGAATT---------AATGCAT--GGC-T-AA-AANGTTAT--TAG-------AA-----AGTT---ATACTTTT-ATAAA-CAAATNCAATGCTTAAGCGAAAACAAACATATTCTCTGAATA---------GTATA-----------CAATATACA--TG-TA------AACACTGGGAAGAATAAGTAA--AG-AGT---GC-GAAATGCTTAGTACAT---TG-ATCAA-ACAGAGGA-------------TA-AACAGTANTTCGA-AAA-GATAANAGTGG-------AAAGATAGAAGAGAA-GAGG---ATATATAC-ATGTACATGTCAACCAAACATCATTGCTCTGTAATTTAACATTAATCATTAGGCGGTATATG-TGGTCGAAAGCG-TCCACTCTCTTTAA-TAAACTT-ATGAACGCATCT--AATTA-A--ATGTTCATTAT-GTTCTTGCTTTAA--------TTCGGTGTTTCCATACAAGATAATGTTTATATTAAGCGGGT-GANAGTTTCTTGTAGATTGAAAAAGTTGG
gi|1 : ATTT-TA-TTGCCATA------T-A-TATATATA----TA----CGGGTAA---CAAGACCTTACAACGTTA--GTTACGACCATTATCTAAATACAATAATGCATAGAATT---------AATGTAT--GGC-T-AACCATACTAT--TAG-------AA-----AGTTCAAGTATTCTT-------CAAATTCAGTACC------------------TTCGCTAAACA---------TTATA-----------CAATGTGCA--TG-TA------AATAGTGAGAAGAATAAATAAATAA-AGT---AC-AAAAGGCTTAATACAT---AG-A
gi|10 : gtatgtagtgagtattaacgtattaccatcctgtgtgtgagatattcttacagtctgatcaggcaaacatacacaaacatgtctaaatattattatttgaaaagtccaaatatgcttaaatttttgcactttcgagaaaaatggcaacattttataaatttggaaatatttaagaaacgctaaattatgattgaaatatatgtcaccttctccgcataactatgtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttttatttatttctacacattttcatataattattgaatcatttgttatataaatagtatcatgtatcctcaagggtctcagggccatctggaatttttgtgaataaaacatatataaaaacatTAATTTT-TTAAA-TAAATGTAATGCTTAAGCGAACGCAAACATATTCTCTGAATA---------GCATA-----------CACTGTACA--TG-TA------AACACTGGGAAGAATGAGTAA--AGGATT---GC-GAAATGCTTAGTACAT---TG-ATCAA-ACAGAGGA-------------TA-AACAGTAATTTGA-AAA-GATAATAGTGG-------AAAGATAGAAAAGAA-GATG---ATATATAC-ATATACAT-------------CAT-GCTCTGTAA-----CATTAGTCATTAGGTTGTTTATG-TGGGAGAAAGCG-TCCACTCTCTTTAA--AAATTC-ATGTATGCATCT--AATTA-A--ATATTCATTAT-ATTCTTGCTTTAA--------TTC
gi|11 : ATGCTTAAGCGAAAACAAAC-T-TTCTCAGAGTA---------GTATA-----------CAATATACA--TG-TA------AACACTGGGAAGATTAAGTAA--AG---T---AC-GAAATGCTTAGTACAT---TG-ATCAA-GCAGAGGA-------------TA-AACAGTAATTTGA-AAA-GATAATAGTGG-------AAAGATAGAAGAGAA-TA------TATAAAC-ATGTACATGTCAACCAAACATCATTGCTCTGTAATTTAACATTAATCATTAGGCGGTAAATG-TGGTCGAAAGCG-TCCACTCTCTTTAA-TAAACTT-ATGAACGCATCT--ATTTA-A--ATGCTCATTAT-GTTCTTGCTTTAA--------TTCGGT
gi|12 : GCAT--GAC-T-AA-AAGGTTAT--TATTTACATTAGTTTTTAGTT---ATATTTTT-ATAAA-TAAACACAATGCTTAAGGGAAAACAAACATACTTT
gi|12 : ATTCTGCGAATAC--------AT-TA-----------CAATATTCA--TG-TA------ATAACTAGGATGAATAAGTAA--A---------------TGCTTAGGATAT---TG-ACCAA-ACAGAGGA-------------TA-AACAGTAATTTGA-ATA-GATAACAGTGG-------AAAGATAGAAGAGAC-GAAA---ATAAAAAC-ATGTACATGTCAACCAAACATCATTGCTCGGTGATgtcaaggacgtgtatagacgtctatgtaattccttgattctgcgaatacattacaatattcatgtaataactaggatgaataagtaaatgcttaggatattgaccaaacagaggataaacagtaatttgaatagataacagtggaaagatagaagagacgaaaataaaaacatgtacatgtcaaccaaacatcattgctcggtgatat
gi|13 : gcatgactaaaaggttattatttacattagtttttagttatatttttataaataaacacaatgcttaagggaaaacaaacatactttgtcaaggacgtgtatagacgtctatgtaattccttgGAAAACAAACATATTCTCTGAATA---------GTATA-----------CAATATACA--TG-TA------AACAATGGCAAGAATATGTAA--AG---T---GC-GAAATGCTTAGTTCAT---TG-ATCAA-ACAAAGGA-------------TA-AACAGTTATTTGA-AAA-AATAATAGTGG-------AAAGATAGAAGAGAA-GA------TATATGC-ATGTACATGTCAACCAAACACCATTGCTCTGTAATTCATCATTAATCATTAGGCGGTATATG-TGGTCGAAAGCG-TCCACTCTATTTAA-TAAACTT-ATGAATGCATCC--AATTA-A--ATGTTTATTAT-GTTCTTGCTTTAA---------TCGGTat
gi|14 : -----------CAATATACACATG-TA------AACAATGGGAAGAATAAGTCA--AG---T---GC-GAAATGCTTAGTACAT---TG-ATCAA-GCAGAGGA----------------AACAGTGATTTGA-AAAAGATAATAGTGG-------AACGATA-------------------TATAC-ATGTACATGTCAACCAAACATCAATGCTCTGTAATTTAACATTAATCATTAGGCAGTATATA-TGGTCGAAAGTG-TCCACTCTGTTTAA-TAAACTT-ATGAACGCATCT--AACTACA--GTGT
gi|15 : ---------AATGTATTTGGT-T-TA-AGCATCATACTAT-------TA-----AATT---ATACTTTT-GAAAA-CAAATTTAATGCTTAAG---AAATAAAAATATTATGTGAGTA---------GTATA-----------CAAAATACG--TGCTATC----AATATT---AAAAATAAG------G-A---------------TTATTACGTTG-TG-AT-AA-A-AGATGA-------------TT-AA---TATTTCGT-AAA-GATCAGAACGA-------GAATATGGAAGAAAG-GTG-----TCT-TGCTGTGTA-ATGT-AAC-------------------ATTTAA-------TATTAGGCGTTATGTG-TGGTCAAAGGCGATCTTCTCT-TTTAA-aaccacaggcaatatttttagagttttatttggt
gi|16 : ctgATTT-TA-TTGCCATA------A-A--------A----TTGGGTCGATTCT---CAAGTTGTTACAAACTTG--GTATTGACCCTGCCCTAAATACAATATTACATATAATT---------AATGCAT--TGC-T-AA-AAAATAAT--TAG-------AA-----AGTaa
gi|16 : tctaatCATGTCAGCCAAACATCTTTTCTCTGTGATTTAACATTTATCATTAGGTGGCTTGTG-TGGTGGAAAGCA-TCCA--TTCTTTAA-CAAACTT-ATAAATGCATCT--TATTA-A--ATGTTCA-CAT-ATTTTTGCTTTAcgcatgtcagccaaacatcttttctctgtgatttaacatttatcattaggtggcttgtgtggtggaaagcatccattctttaacaaacttataaatgcatcttattaaatgttcacatatttttgcttta
gi|18 : tctaatattttattgccataaaattgggtcgattctcaagttgttacaaacttggtattgaccctgccctaaatacaatattacatataattaatgcattgctaaaaaataattagaaagtcgTTAACATTAATCATTAGGCGGTATATG-TGGTCGAAGGCG-TCCACTCTCTTTAA-TAAACTTAATG-ATGCATTT--AATTA-A--ATGTTCATTAT-GTTCTTGCTTTAA--------TTCGGTGTTTCCATACAAGATAATGTTTATATTACGCGGTT-GAAAGTTTCTTGTAGATTG--AAAGTTGG
gi|19 : aTA-----------CAATATACA--TT-TA------AACAATAAGAAGAAGAAATAA--AG-AGTTGTGC----ATGCTTTATACGT---AG-ATCAA-ACAGAAGACAAATTGTGACGATA-AATAGCATTTCAT-AAT-GATAAGAGTGGGAAGTGGAAAAATGGAactttttgagttgtcaatcta
gi|2 : CATTT-TAATTACCATA------A-A-TATACA-A----TTGGGTCTGGTCA---CACGTTCTTATAATGTTA--GTTATGACTCTTCCCTGAATACAATATTACATAGCTTT---------AATACAT--GGC-T-TA-AGTGACTT--TAC-------AA-----AGTT---ATATTTTTTATAAA-CAAATACAATGCTTAAGCGAAAACAAACATATTTTCTGAATA---------GTATA-----------CAATGTACA--TG-TA------AACACTGGGAAGATTAAATAA--AG-AGGA--GC-GAAATGCTTGGTGCAT---TG-ATCAA-ACAGAATA-------------TA-AAAAGTATTTCGA-AAA-GATAAAAGTGG-------AAAGACAGAAGAGAA-AAAAGACATATATAC-ATGTACATGTCAACCAAACGTCATTGCTCTGTGGTTTAACATTAATCGTTTGATGGAATATG-TGGTTGAAAGCG-TCCAGTTTATATAA-TAAACTT-ATGAACGCATAT--AATTA-A--ATGTTCATTAT-GTTCATGCTTTAA--------TTCGGTTTTTCCATACAAGATAATGTTAATGTTGAATGGGTAAAAAAATTCTTGTAGACTGAAAACGTTGGtggcatgagataaaagttagccgaacagtaacactctacgat
gi|20 : -AGT---GC-GAAATTCTTGGTATAT---TGTATT---------GA-------------TA-----GTATTTCGA-AAA-GATGGAAGTGG-------AAAGACAGAAGAGAA-GGAG---ATAT-------GTATATGTCAGTTAAACATCATTGCTCTGTGATTTAACATTAATCATTAGGTAGTATGTG-TGGTCGAAAGCG-TTAAATCTCTTAAAGTAA
gi|21 : agaATTTATA-TTGCCATATACAC-ACA-CACACA-C----TTGGGTCGAGTCA---CACGTTCTTACA-C-TTAAAGTTACGATCCTTCACTA----CAATATTACATAGAACT---------GATGCAG--GGC-T-AG-AACGTTAT--TAG-------AG-----AGTT---ATATTTTT-ATAAA-CAAAT
gi|22 : aacatGCTTAGTACAT---TG-ATCAA-GCAGAGGA-------------TA-AACAGTAATTTGA-AAA-GATAATAGTGG-------AAAGATAGAAAAGAA-GA------TATGTAC-ATGTACATGTCAACCAAACATCATTGCTCTGTAATTTAACATTAATCATTAGGCGGTATATG-TGGTC
gi|23 : T--TAG-------AA-----AGTT---ATACTTTT-ATAAA-CAAATACAATGCTTAAGCGAAAACAAACATATTCTCTGAATT---------GTATA-----------CAATATTCA--TG-TA------AACAATGGGGAGAATAAATAA-----AGT---GC-GAAATGCTTAGTACAT---TG-ATCAA-
gi|24 : AT-GTTCTTACTTTAA--------TTCAGTGTGTCCATACAAAATAATGTTTATATTGAGTGAGT-GATAAGTTCTTGTTGATTGAAAAAGTTGG
gi|25 : TCTGTCATCTAACATTAATTATAAGCTGGCAAATA-CGGTCGAAA------TA------TTGA-TAGAAAT-GTGAACACATCT--GAATA-T--ATATGCATTGT-actctttgagttgtgaatcta
gi|26 : gtcgcgT---GC-GAAA-----AGTACAT---TG-ATAAA-ACAGAAGA-------------CT-TAGAGTATTTCGA-AAT-GATGAGAGTTG-------AAAGGTAGACGAGAA-TGAG---ATATTTAC-ATGTA
gi|27 : TACA-A----TTGTGTTGGGTCA---C------TTAGAATGCTA--GCTACAACCCTTCCCTAAATACAATAGTACGTAGAATA---------AATGCAC--GAC-
gi|28 : ccCTTAGTACAT---TG-ATCAA-GCAGAGGA-------------TA-AACAGTAATTTGA-AAA-GATAATAGTGG-------AAAGATAGAAGAGAA----A---ATATATAC-ATatg
gi|29 : aA-TTGCCATATAAACTA-G-TATACA-A----TTAGGTTTGGTCACATCAAGATCTCACAACATTA--GTCACAATTCTTC
gi|3 : taATTT-TA-TTGCCACA------T-A-CATACA-C----TTGGGTCGGGTCA---CAAGCTCTTACAACGTAA--CTGACGACTCTTCCCTGAATACACTAGTACATAGAATT---------AAAACAT--GGA-TAAA-AAAGTTAT--TGG-------AA-----AGTC---CTGCTTTT--TAAATCAAATCAAATGCTTAAGCGTAAACCAGCACATT------ATAC--------GTAAA-----------AAATGTACA--CG-CA------GACA--GTGAAGTAT---TAA--AG-AGT---TG-GAAAGGCTTCGTATAT---AG-ACTAATAC-GAAGA-------------TAGGAC--TAGGT-GATAAA-GATATGGGAGG-------GAAGACAGAAGAGCA-GGAG---A-----------TACCTGTCAGTCGAGTA-----GC-------TTTAACATGAAATATTAGTTGGTACGTA-TTGTTGAAAGCC-ACCACTATCTTTAA-TAAAAGC-ACGAACGCATCT--GAATA-GGCATATTC--TAT-GTac
gi|31 : cctCA---GAAGTTCTAACAGCATTA--GTTACGACCCTTCCCTAAATACAGTATTACattcaattatagtattctttcagaaattactaagaaaattatgattcagatgatcttacaaaaattttgta
gi|32 : ttgT---GC-GACATGCTTAGTACAA---TG-ATTAA-ACAGAAAG-------------TC-AATAGTATTTTGA-AA
gi|33 : ATTT-TA-TTGCCACA------C-A-TATACA-A----TTGGGTC-GGTCG---CAA
gi|4 : atCATTG-TA-TTGGTTTA------A-AATATACA-A----TTTGGTCGGGTCA---CAAATTCTTACAACGTAA--GTTAAGACCCTTTTCTAAA-ACACAATTAACTAAAACT---------AAGGCAT--GGC-T-AA-AA-GTTTT--CAG-------AA-----AGTT---ATAACTTT-ATAAA-CAAATAAAATGCTTAAGCGAAAACAAACGTATTATCTAAAAA---------GAATA-----------CAATATACA--TG-TT------ATCACTGAGAAGAATAAGTAA--AGAAGT---AC-GAAATGCTTATTGCATAAACA-ATTAA-AC
gi|5 : aagcgtatataattattaTCCTTACAACGTTA--GTTACGACTCTTCCC-------------------AATT---------TATGTAT--GGCGT-AA-CAGGT-AT--TAA-------GA-----CGTC---ATGCTTTT-TTAAAACAAATTCAAAGATTAAGCAAAACCTAACATATTATTTGAACATATATGTAGGTATATGCATGCATATCGATGTACA--TA-TATTGTATAACAATGTGAGGAATATGCAA--TG-AGT---TTTGAAATAATTAGTATA-----G-ATCGA-ACAGAAGA-------------CG-AAAAGTAGTTTGT-AAA-TATTAGAGTGG-------AAAGATTGAAAGGCA-GTGA---ATAT-----ATGTA-AT-TTAACC--------TT--------------CATT----ATTAGCT--TGTATGCTGATCGAAAGCG-ATGA-TTTTTTTAA-TAAA-GT-ATAAACGCATCCGAAATAA-A--ATGTT-GTTTTAGTTCTTGTTTTAAACGGCGAGTTCA--GTTTTAATACATGTTTTTGTATATATgattcgagttcttacaatactatatattttaaatgaaagtaacctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaagaactatttatatcaaagatataataacatgactgtgtagtccgacgaccaataacaaatgcaatgacgaagtgtaccagtcacca
gi|6 : TAT--TAG-------AA-----AGTT---ATACTTTT-ATGAA-CAAAAGCAATGCTTAATCGAAAATAAAGATGTTCTCTGAATA---------GTATA-----------CAATATACA--TG-TA------AACACTGGGAAG------TAA--AG---T---GT-GAAATGCTTAGTACAT---TG-ATCAA-ACGAATGA-------------TA-AATAGTAATTTGA-AAA-GATAGTAGTGG-------AAAGATAGAAGAGAA-GAAG---ATATATAA-ATGTACATGTTAAACAAACATCATTGCTCTGTAATTTAACATTAATTATTAGGCGGTATATG-TGGTCGAATACG-TCCACTTTCTTT-A-TGAACGT-ATGAACGCATCT--AATTA-A--ATATTCATTAT-GTTCTTGCTTTAA--------TTCGGTGTTTCCATACAAGATAATGTTTATATTAAGCGGTT-GAGAGTTTCTTGTAGATTGAAAAACTTGG
gi|7 : ACA--TG-CA------AACACTTGGAAGAATATCTAA--AG-AATA--GC-AAAATGCTGAGTACGT---TC-ATCAA-ACAGAAGA-------------TA-AATAGTATTTTGA-AAA-GATAATAACGT-------AAAGGTAGTAGAAAAAGAAG---ATATATAC-ATGTGCATGTCAACCAAACAGCATTGCTCTGAGATTTACTATTAATCATTATGTCGTATGTG-CAATCGAAAGCG-TCAACTATCTTTAA-TAAACTT-CTGAAAGTTTCT--AATAA-A--ATGTGCATCAT-GTTCTTGTTTTGA--------TTCGGTGTTTCGATACAAGATAATGTTTATCTAAAACGGGT-GATATTTTCTTGTATATTGAAAAGGTTGactctttgagttgtgaatct
gi|8 : A--GTTACGACCCTTCCCTAAATACAATATTACATAAAGTT---------AATGCAT--GGC-T-AA-AATGTTGT--TAG-------AA-----ATTT---ATACCTTT-ATAAA-CAAATACAATGCTTAAGCGAAAACAAACATATTCTCTGAAGA---------GTATA-----------CAATATACA--TG-TA------AACACTGGGAAGAATATGTAA-----AGT---GC-CAAATACTTAGTACAT---TG-CTCAA-ACAGAGGA-------------TA-AACAGTAATTTGA-AAA-GATAATAGTGG-------AAAGATAGAAGGGAA----C---ATATATGC-ATGTACATGTCAACCGAACATCATTGCTCTGTAATTTAACATTAATCATTAGGTGGTACATA-TGGTCagtttgaatcta
gi|9 : TGCCA--------A-A-TATAAA-AAAAATTTGATTGGAACA---AAAGTTCTGGCAAAGCTA--GTTACGACCCTTGCCTAAATACTATACTACGTAGACTCGTGGAAAGAAAAAAAT--G-C-T-AA-ACATTTAT--TAG-------AA-----AGTT---ATGCATTT-ATAAA-CAAAATCAATGCATTATTGAAAGCAAACACATTCTCTAAACA---------GTATA-----------GAATGTACA--TG-TA------AACACTGTGAAAAATAAACAA--AG-AAT---CC-G--------------T---TA-AGTAA-AGAGAAGA-------------TA-AAAAGAAGTATAC-AAA-AATTAGAGCGG-------AAAGATAGAAG-----------------TAA-ATG--------AACT--ACG-CATTGCTCTGTAATTT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TACGACAAACATATACAATACCATAACAAGCATAGATAATGAGTACATTGTACAAGCTATTTAACGATTAAAATTCTTACAATAATATAAATTTATAATGACATTAACCTGTAATAATAATTAAGAGCTATGTATATCAAAGATATCGTATTATATAGTTTCAATGCAGTCTAATAAAAAAAACAAGACTATGTTGTCCGGCGACTGATGGCGAATGCAATGAAGCATTTTACCTGTCACAAG
Unaligned ( gi|30 ): GTATTACCATCCTGTACGCGAGATATACTTTTTCTTACAGCTTGAACATATCCAAATATCTTTAAAT
Alignments
lowQualScore : 22222222 111111111 1111111 111111111 11111111111 111111 1111111 1111111111111 111111111111 11111111
lowQualScore : 5 5 77777777 4 4 8888 1 666 44 1 444444444 44 3 3 3 4 44 0000000 77777 555 66 6 1 0 777777777 11111111111 33 2 000000 2 33 2222222 2 555 1 1 0 1111111111111 2 2 1 3 2 2 1 7777777 222222222222 22 2 2 2 1 2 2 4 1 2 3 44 3 44 3 66666666 8 1 22 0
lowQualScore : . . ........ . . .... . ... .. . ......... .. . . . . .. ....... ..... ... .. . . . ......... ........... .. . ...... . .. ....... . ... . . . ............. . . . . . . . ....... ............ .. . . . . . . . . . . .. . .. . ........ . . .. .
lowQualScore : 7 0 88888888 4 0 5555 6 444 66 3 555555555 66 3 6 6 5 22 0000000 77777 888 88 2 0 5 111111111 99999999999 22 4 000000 7 22 7777777 0 777 8 9 7 6666666666666 1 6 0 6 1 2 0 2222222 777777777777 99 4 0 6 1 5 9 3 9 9 3 66 3 66 3 11111111 0 0 44 8
consensus : CATTT-TA-TTGCCATA------A-A-TATACA-A----TTGGGTCGGGTCA---CAAGTTCTTACAACGTTA--GTTACGACCCTTCCCTAAATACAATATTACATAGAATT---------AATGCAT--GGC-T-AA-AANGTTAT--TAG-------AA-----AGTT---ATACTTTT-ATAAA-CAAATNCAATGCTTAAGCGAAAACAAACATATTCTCTGAATA---------GTATA-----------CAATATACA--TG-TA------AACACTGGGAAGAATAAGTAA--AG-AGT---GC-GAAATGCTTAGTACAT---TG-ATCAA-ACAGAGGA-------------TA-AACAGTANTTCGA-AAA-GATAANAGTGG-------AAAGATAGAAGAGAA-GAAG---ATATA-TAC-ATGTACATGTCAACCAAACATCATTGCTCTGTAATTTAACATTAATCATTAGGCGGTATATG-TGGTCGAAAGCG-TCCACTCTCTTTAA-TAAACTT-ATGAACGCATCT--AATTA-A--ATGTTCATTAT-GTTCTTGCTTTAA--------TTCGGTGTTTCCATACAAGATAATGTTTATATTAAGCGGGT-GANAGTTTCTTGTAGATTGAAAAAGTTGG
Reference ( family-768 ) : CATTT-TA-TTGCCATA------A-A-TATACA-A----TTGGGTCGGGTCA---CAAGTTCTTACAACGTTA--GTTACGACCCTTCCCTAAATACAATATTACATAGAATT---------AATGCAT--GGC-T-AA-AANGTTAT--TAG-------AA-----AGTT---ATACTTTT-ATAAA-CAAATNCAATGCTTAAGCGAAAACAAACATATTCTCTGAATA---------GTATA-----------CAATATACA--TG-TA------AACACTGGGAAGAATAAGTAA--AG-AGT---GC-GAAATGCTTAGTACAT---TG-ATCAA-ACAGAGGA-------------TA-AACAGTANTTCGA-AAA-GATAANAGTGG-------AAAGATAGAAGAGAA-GAAG---ATATA-TAC-ATGTACATGTCAACCAAACATCATTGCTCTGTAATTTAACATTAATCATTAGGCGGTATATG-TGGTCGAAAGCG-TCCACTCTCTTTAA-TAAACTT-ATGAACGCATCT--AATTA-A--ATGTTCATTAT-GTTCTTGCTTTAA--------TTCGGTGTTTCCATACAAGATAATGTTTATATTAAGCGGGT-GANAGTTTCTTGTAGATTGAAAAAGTTGG
gi|1 : ATTT-TA-TTGCCATA------T-A-TATATATA----TA----CGGGTAA---CAAGACCTTACAACGTTA--GTTACGACCATTATCTAAATACAATAATGCATAGAATT---------AATGTAT--GGC-T-AACCATACTAT--TAG-------AA-----AGTTCAAGTATTCTT-------CAAATTCAGTACC------------------TTCGCTAAACA---------TTATA-----------CAATGTGCA--TG-TA------AATAGTGAGAAGAATAAATAAATAA-AGT---AC-AAAAGGCTTAATACAT---AG-A
gi|10 : gtatgtagtgagtattaacgtattaccatcctgtgtgtgagatattcttacagtctgatcaggcaaacatacacaaacatgtctaaatattattatttgaaaagtccaaatatgcttaaatttttgcactttcgagaaaaatggcaacattttataaatttggaaatatttaagaaacgctaaattatgattgaaatatatgtcaccttctccgcataactatgtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttttatttatttctacacattttcatataattattgaatcatttgttatataaatagtatcatgtatcctcaagggtctcagggccatctggaatttttgtgaataaaacatatataaaaacatTAATTTT-TTAAA-TAAATGTAATGCTTAAGCGAACGCAAACATATTCTCTGAATA---------GCATA-----------CACTGTACA--TG-TA------AACACTGGGAAGAATGAGTAA--AGGATT---GC-GAAATGCTTAGTACAT---TG-ATCAA-ACAGAGGA-------------TA-AACAGTAATTTGA-AAA-GATAATAGTGG-------AAAGATAGAAAAGAA-GATG---ATATA-TAC-ATATACAT-------------CAT-GCTCTGTAA-----CATTAGTCATTAGGTTGTTTATG-TGGGAGAAAGCG-TCCACTCTCTTTAA--AAATTC-ATGTATGCATCT--AATTA-A--ATATTCATTAT-ATTCTTGCTTTAA--------TTC
gi|11 : ATGCTTAAGCGAAAACAAAC-T-TTCTCAGAGTA---------GTATA-----------CAATATACA--TG-TA------AACACTGGGAAGATTAAGTAA--AG---T---AC-GAAATGCTTAGTACAT---TG-ATCAA-GCAGAGGA-------------TA-AACAGTAATTTGA-AAA-GATAATAGTGG-------AAAGATAGAAGAGAA-TA------TATA-AAC-ATGTACATGTCAACCAAACATCATTGCTCTGTAATTTAACATTAATCATTAGGCGGTAAATG-TGGTCGAAAGCG-TCCACTCTCTTTAA-TAAACTT-ATGAACGCATCT--ATTTA-A--ATGCTCATTAT-GTTCTTGCTTTAA--------TTCGGT
gi|12 : GCAT--GAC-T-AA-AAGGTTAT--TATTTACATTAGTTTTTAGTT---ATATTTTT-ATAAA-TAAACACAATGCTTAAGGGAAAACAAACATACTTT
gi|12 : ATTCTGCGAATAC--------AT-TA-----------CAATATTCA--TG-TA------ATAACTAGGATGAATAAGTAA--A---------------TGCTTAGGATAT---TG-ACCAA-ACAGAGGA-------------TA-AACAGTAATTTGA-ATA-GATAACAGTGG-------AAAGATAGAAGAGAC-GAAA---ATAAA-AAC-ATGTACATGTCAACCAAACATCATTGCTCGGTGATgtcaaggacgtgtatagacgtctatgtaattccttgattctgcgaatacattacaatattcatgtaataactaggatgaataagtaaatgcttaggatattgaccaaacagaggataaacagtaatttgaatagataacagtggaaagatagaagagacgaaaataaaaacatgtacatgtcaaccaaacatcattgctcggtgatat
gi|13 : gcatgactaaaaggttattatttacattagtttttagttatatttttataaataaacacaatgcttaagggaaaacaaacatactttgtcaaggacgtgtatagacgtctatgtaattccttgGAAAACAAACATATTCTCTGAATA---------GTATA-----------CAATATACA--TG-TA------AACAATGGCAAGAATATGTAA--AG---T---GC-GAAATGCTTAGTTCAT---TG-ATCAA-ACAAAGGA-------------TA-AACAGTTATTTGA-AAA-AATAATAGTGG-------AAAGATAGAAGAGAA----G---ATATA-TGC-ATGTACATGTCAACCAAACACCATTGCTCTGTAATTCATCATTAATCATTAGGCGGTATATG-TGGTCGAAAGCG-TCCACTCTATTTAA-TAAACTT-ATGAATGCATCC--AATTA-A--ATGTTTATTAT-GTTCTTGCTTTAA---------TCGGTat
gi|14 : -----------CAATATACACATG-TA------AACAATGGGAAGAATAAGTCA--AG---T---GC-GAAATGCTTAGTACAT---TG-ATCAA-GCAGAGGA----------------AACAGTGATTTGA-AAAAGATAATAGTGG-------AACGATA-------------------TA-TAC-ATGTACATGTCAACCAAACATCAATGCTCTGTAATTTAACATTAATCATTAGGCAGTATATA-TGGTCGAAAGTG-TCCACTCTGTTTAA-TAAACTT-ATGAACGCATCT--AACTACA--GTGT
gi|15 : ---------AATGTATTTGGT-T-TA-AGCATCATACTAT-------TA-----AATT---ATACTTTT-GAAAA-CAAATTTAATGCTTAAG---AAATAAAAATATTATGTGAGTA---------GTATA-----------CAAAATACG--TGCTATC----AATATT---AAAAATAAG------G-A---------------TTATTACGTTG-TG-AT-AA-A-AGATGA-------------TT-AA---TATTTCGT-AAA-GATCAGAACGA-------GAATATGGAAGA-----AAG---GTGTCTTGCTGTGTA-ATGT------AACAT--------------------TTAAT-ATTAGGCGTTATGTG-TGGTCAAAGGCGATCTTCTCT-TTTAA-aaccacaggcaatatttttagagttttatttggt
gi|16 : ctgATTT-TA-TTGCCATA------A-A--------A----TTGGGTCGATTCT---CAAGTTGTTACAAACTTG--GTATTGACCCTGCCCTAAATACAATATTACATATAATT---------AATGCAT--TGC-T-AA-AAAATAAT--TAG-------AA-----AGTaa
gi|16 : tctaatCATGTCAGCCAAACATCTTTTCTCTGTGATTTAACATTTATCATTAGGTGGCTTGTG-TGGTGGAAAGCA-TCCA--TTCTTTAA-CAAACTT-ATAAATGCATCT--TATTA-A--ATGTTCA-CAT-ATTTTTGCTTTAcgcatgtcagccaaacatcttttctctgtgatttaacatttatcattaggtggcttgtgtggtggaaagcatccattctttaacaaacttataaatgcatcttattaaatgttcacatatttttgcttta
gi|18 : tctaatattttattgccataaaattgggtcgattctcaagttgttacaaacttggtattgaccctgccctaaatacaatattacatataattaatgcattgctaaaaaataattagaaagtcgTTAACATTAATCATTAGGCGGTATATG-TGGTCGAAGGCG-TCCACTCTCTTTAA-TAAACTTAATG-ATGCATTT--AATTA-A--ATGTTCATTAT-GTTCTTGCTTTAA--------TTCGGTGTTTCCATACAAGATAATGTTTATATTACGCGGTT-GAAAGTTTCTTGTAGATTG--AAAGTTGG
gi|19 : aTA-----------CAATATACA--TT-TA------AACAATAAGAAGAAGAAATAA--AG-AGTTGTGC----ATGCTTTATACGT---AG-ATCAA-ACAGAAGACAAATTGTGACGATA-AATAGCATTTCAT-AAT-GATAAGAGTGGGAAGTGGAAAAATGGAactttttgagttgtcaatcta
gi|2 : CATTT-TAATTACCATA------A-A-TATACA-A----TTGGGTCTGGTCA---CACGTTCTTATAATGTTA--GTTATGACTCTTCCCTGAATACAATATTACATAGCTTT---------AATACAT--GGC-T-TA-AGTGACTT--TAC-------AA-----AGTT---ATATTTTTTATAAA-CAAATACAATGCTTAAGCGAAAACAAACATATTTTCTGAATA---------GTATA-----------CAATGTACA--TG-TA------AACACTGGGAAGATTAAATAA--AG-AGGA--GC-GAAATGCTTGGTGCAT---TG-ATCAA-ACAGAATA-------------TA-AAAAGTATTTCGA-AAA-GATAAAAGTGG-------AAAGACAGAAGAGAA-AAAAGACATATA-TAC-ATGTACATGTCAACCAAACGTCATTGCTCTGTGGTTTAACATTAATCGTTTGATGGAATATG-TGGTTGAAAGCG-TCCAGTTTATATAA-TAAACTT-ATGAACGCATAT--AATTA-A--ATGTTCATTAT-GTTCATGCTTTAA--------TTCGGTTTTTCCATACAAGATAATGTTAATGTTGAATGGGTAAAAAAATTCTTGTAGACTGAAAACGTTGGtggcatgagataaaagttagccgaacagtaacactctacgat
gi|20 : -AGT---GC-GAAATTCTTGGTATAT---TGTATT---------GA-------------TA-----GTATTTCGA-AAA-GATGGAAGTGG-------AAAGACAGAAGAGAA-GGAG---ATAT--------GTATATGTCAGTTAAACATCATTGCTCTGTGATTTAACATTAATCATTAGGTAGTATGTG-TGGTCGAAAGCG-TTAAATCTCTTAAAGTAA
gi|21 : agaATTTATA-TTGCCATATACAC-ACA-CACACA-C----TTGGGTCGAGTCA---CACGTTCTTACA-C-TTAAAGTTACGATCCTTCACTA----CAATATTACATAGAACT---------GATGCAG--GGC-T-AG-AACGTTAT--TAG-------AG-----AGTT---ATATTTTT-ATAAA-CAAAT
gi|22 : aacatGCTTAGTACAT---TG-ATCAA-GCAGAGGA-------------TA-AACAGTAATTTGA-AAA-GATAATAGTGG-------AAAGATAGAA---AA-GAAG---ATATG-TAC-ATGTACATGTCAACCAAACATCATTGCTCTGTAATTTAACATTAATCATTAGGCGGTATATG-TGGTC
gi|23 : T--TAG-------AA-----AGTT---ATACTTTT-ATAAA-CAAATACAATGCTTAAGCGAAAACAAACATATTCTCTGAATT---------GTATA-----------CAATATTCA--TG-TA------AACAATGGGGAGAATAAATAA-----AGT---GC-GAAATGCTTAGTACAT---TG-ATCAA-
gi|24 : AT-GTTCTTACTTTAA--------TTCAGTGTGTCCATACAAAATAATGTTTATATTGAGTGAGT-GATAAGTTCTTGTTGATTGAAAAAGTTGG
gi|25 : TCTGTCATCTAACATTAATTATAAGCTGGCAAATA-CGGTCGAAA------TA------TTGA-TAGAAAT-GTGAACACATCT--GAATA-T--ATATGCATTGT-actctttgagttgtgaatcta
gi|26 : gtcgcgT---GC-GAAA-----AGTACAT---TG-ATAAA-ACAGAAGA-------------CT-TAGAGTATTTCGA-AAT-GATGAGAGTTG-------AAAGGTAGACGAGAA-TGAG---ATATT-TAC-ATGTA
gi|27 : TACA-A----TTGTGTTGGGTCA---C------TTAGAATGCTA--GCTACAACCCTTCCCTAAATACAATAGTACGTAGAATA---------AATGCAC--GAC-
gi|28 : ccCTTAGTACAT---TG-ATCAA-GCAGAGGA-------------TA-AACAGTAATTTGA-AAA-GATAATAGTGG-------AAAGATAGAAG---A-GAAA---ATATA-TAC-ATatg
gi|29 : aA-TTGCCATATAAACTA-G-TATACA-A----TTAGGTTTGGTCACATCAAGATCTCACAACATTA--GTCACAATTCTTC
gi|3 : taATTT-TA-TTGCCACA------T-A-CATACA-C----TTGGGTCGGGTCA---CAAGCTCTTACAACGTAA--CTGACGACTCTTCCCTGAATACACTAGTACATAGAATT---------AAAACAT--GGA-TAAA-AAAGTTAT--TGG-------AA-----AGTC---CTGCTTTT--TAAATCAAATCAAATGCTTAAGCGTAAACCAGCACATT------ATAC--------GTAAA-----------AAATGTACA--CG-CA------GACA--GTGAAGTAT---TAA--AG-AGT---TG-GAAAGGCTTCGTATAT---AG-ACTAATAC-GAAGA-------------TAGGAC--TAGGT-GATAAA-GATATGGGAGG-------GAAGACAGAAGAGCA-GGAG---A------------TACCTGTCAGTCGAGTA-----GC-------TTTAACATGAAATATTAGTTGGTACGTA-TTGTTGAAAGCC-ACCACTATCTTTAA-TAAAAGC-ACGAACGCATCT--GAATA-GGCATATTC--TAT-GTac
gi|31 : cctCA---GAAGTTCTAACAGCATTA--GTTACGACCCTTCCCTAAATACAGTATTACattcaattatagtattctttcagaaattactaagaaaattatgattcagatgatcttacaaaaattttgta
gi|32 : ttgT---GC-GACATGCTTAGTACAA---TG-ATTAA-ACAGAAAG-------------TC-AATAGTATTTTGA-AA
gi|33 : ATTT-TA-TTGCCACA------C-A-TATACA-A----TTGGGTC-GGTCG---CAA
gi|4 : atCATTG-TA-TTGGTTTA------A-AATATACA-A----TTTGGTCGGGTCA---CAAATTCTTACAACGTAA--GTTAAGACCCTTTTCTAAA-ACACAATTAACTAAAACT---------AAGGCAT--GGC-T-AA-AA-GTTTT--CAG-------AA-----AGTT---ATAACTTT-ATAAA-CAAATAAAATGCTTAAGCGAAAACAAACGTATTATCTAAAAA---------GAATA-----------CAATATACA--TG-TT------ATCACTGAGAAGAATAAGTAA--AGAAGT---AC-GAAATGCTTATTGCATAAACA-ATTAA-AC
gi|5 : aagcgtatataattattaTCCTTACAACGTTA--GTTACGACTCTTCCC-------------------AATT---------TATGTAT--GGCGT-AA-CAGGT-AT--TAA-------GA-----CGTC---ATGCTTTT-TTAAAACAAATTCAAAGATTAAGCAAAACCTAACATATTATTTGAACATATATGTAGGTATATGCATGCATATCGATGTACA--TA-TATTGTATAACAATGTGAGGAATATGCAA--TG-AGT---TTTGAAATAATTAGTATA-----G-ATCGA-ACAGAAGA-------------CG-AAAAGTAGTTTGT-AAA-TATTAGAGTGG-------AAAGATTGAAAGGCA-G-------TGAA-TAT-ATGTA-AT-TTAACC--------TT--------------CATT----ATTAGCT--TGTATGCTGATCGAAAGCG-ATGA-TTTTTTTAA-TAAA-GT-ATAAACGCATCCGAAATAA-A--ATGTT-GTTTTAGTTCTTGTTTTAAACGGCGAGTTCA--GTTTTAATACATGTTTTTGTATATATgattcgagttcttacaatactatatattttaaatgaaagtaacctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaagaactatttatatcaaagatataataacatgactgtgtagtccgacgaccaataacaaatgcaatgacgaagtgtaccagtcacca
gi|6 : TAT--TAG-------AA-----AGTT---ATACTTTT-ATGAA-CAAAAGCAATGCTTAATCGAAAATAAAGATGTTCTCTGAATA---------GTATA-----------CAATATACA--TG-TA------AACACTGGGAAG------TAA--AG---T---GT-GAAATGCTTAGTACAT---TG-ATCAA-ACGAATGA-------------TA-AATAGTAATTTGA-AAA-GATAGTAGTGG-------AAAGATAGAAGAGAA-GAAG---ATATA-TAA-ATGTACATGTTAAACAAACATCATTGCTCTGTAATTTAACATTAATTATTAGGCGGTATATG-TGGTCGAATACG-TCCACTTTCTTT-A-TGAACGT-ATGAACGCATCT--AATTA-A--ATATTCATTAT-GTTCTTGCTTTAA--------TTCGGTGTTTCCATACAAGATAATGTTTATATTAAGCGGTT-GAGAGTTTCTTGTAGATTGAAAAACTTGG
gi|7 : ACA--TG-CA------AACACTTGGAAGAATATCTAA--AG-AATA--GC-AAAATGCTGAGTACGT---TC-ATCAA-ACAGAAGA-------------TA-AATAGTATTTTGA-AAA-GATAATAACGT-------AAAGGTAGTAGAAAAAGAAG---ATATA-TAC-ATGTGCATGTCAACCAAACAGCATTGCTCTGAGATTTACTATTAATCATTATGTCGTATGTG-CAATCGAAAGCG-TCAACTATCTTTAA-TAAACTT-CTGAAAGTTTCT--AATAA-A--ATGTGCATCAT-GTTCTTGTTTTGA--------TTCGGTGTTTCGATACAAGATAATGTTTATCTAAAACGGGT-GATATTTTCTTGTATATTGAAAAGGTTGactctttgagttgtgaatct
gi|8 : A--GTTACGACCCTTCCCTAAATACAATATTACATAAAGTT---------AATGCAT--GGC-T-AA-AATGTTGT--TAG-------AA-----ATTT---ATACCTTT-ATAAA-CAAATACAATGCTTAAGCGAAAACAAACATATTCTCTGAAGA---------GTATA-----------CAATATACA--TG-TA------AACACTGGGAAGAATATGTAA-----AGT---GC-CAAATACTTAGTACAT---TG-CTCAA-ACAGAGGA-------------TA-AACAGTAATTTGA-AAA-GATAATAGTGG-------AAAGATAGAAG---G-GAAC---ATATA-TGC-ATGTACATGTCAACCGAACATCATTGCTCTGTAATTTAACATTAATCATTAGGTGGTACATA-TGGTCagtttgaatcta
gi|9 : TGCCA--------A-A-TATAAA-AAAAATTTGATTGGAACA---AAAGTTCTGGCAAAGCTA--GTTACGACCCTTGCCTAAATACTATACTACGTAGACTCGTGGAAAGAAAAAAAT--G-C-T-AA-ACATTTAT--TAG-------AA-----AGTT---ATGCATTT-ATAAA-CAAAATCAATGCATTATTGAAAGCAAACACATTCTCTAAACA---------GTATA-----------GAATGTACA--TG-TA------AACACTGTGAAAAATAAACAA--AG-AAT---CC-G--------------T---TA-AGTAA-AGAGAAGA-------------TA-AAAAGAAGTATAC-AAA-AATTAGAGCGG-------AAAGATAGAAG------------------TAA-ATG--------AACT--ACG-CATTGCTCTGTAATTT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TACGACAAACATATACAATACCATAACAAGCATAGATAATGAGTACATTGTACAAGCTATTTAACGATTAAAATTCTTACAATAATATAAATTTATAATGACATTAACCTGTAATAATAATTAAGAGCTATGTATATCAAAGATATCGTATTATATAGTTTCAATGCAGTCTAATAAAAAAAACAAGACTATGTTGTCCGGCGACTGATGGCGAATGCAATGAAGCATTTTACCTGTCACAAG
Unaligned ( gi|30 ): GTATTACCATCCTGTACGCGAGATATACTTTTTCTTACAGCTTGAACATATCCAAATATCTTTAAAT
Alignments
lowQualScore : 22222222 111111111 1111111 111111111 11111111111 111111 1111111 1111111111111 111111111111 11111111
lowQualScore : 5 5 77777777 4 4 8888 1 666 44 1 444444444 44 3 3 3 4 44 0000000 77777 555 66 6 1 0 777777777 11111111111 33 2 000000 2 33 2222222 2 555 1 1 0 1111111111111 2 2 1 3 2 2 1 7777777 222222222222 22 2 2 2 1 2 2 4 1 2 3 44 3 44 3 66666666 8 1 22 0
lowQualScore : . . ........ . . .... . ... .. . ......... .. . . . . .. ....... ..... ... .. . . . ......... ........... .. . ...... . .. ....... . ... . . . ............. . . . . . . . ....... ............ .. . . . . . . . . . . .. . .. . ........ . . .. .
lowQualScore : 7 0 88888888 4 0 5555 6 444 66 3 555555555 66 3 6 6 5 22 0000000 77777 888 88 2 0 5 111111111 99999999999 22 4 000000 7 22 7777777 0 777 8 9 7 6666666666666 1 6 0 6 1 2 0 2222222 777777777777 99 4 0 6 1 5 9 3 9 9 3 66 3 66 3 11111111 0 0 44 8
consensus : CATTT-TA-TTGCCATA------A-A-TATACA-A----TTGGGTCGGGTCA---CAAGTTCTTACAACGTTA--GTTACGACCCTTCCCTAAATACAATATTACATAGAATT---------AATGCAT--GGC-T-AA-AANGTTAT--TAG-------AA-----AGTT---ATACTTTT-ATAAA-CAAATNCAATGCTTAAGCGAAAACAAACATATTCTCTGAATA---------GTATA-----------CAATATACA--TG-TA------AACACTGGGAAGAATAAGTAA--AG-AGT---GC-GAAATGCTTAGTACAT---TG-ATCAA-ACAGAGGA-------------TA-AACAGTANTTCGA-AAA-GATAANAGTGG-------AAAGATAGAAGAGAA-GAAG---ATATA-TAC-ATGTACATGTCAACCAAACATCATTGCTCTGTAATTTAACATTAATCATTAGGCGGTATATG-TGGTCGAAAGCG-TCCACTCTCTTTAA-TAAACTT-ATGAACGCATCT--AATTA-A--ATGTTCATTAT-GTTCTTGCTTTAA--------TTCGGTGTTTCCATACAAGATAATGTTTATATTAAGCGGGT-GANAGTTTCTTGTAGATTGAAAAAGTTGG
Reference ( family-768 ) : CATTT-TA-TTGCCATA------A-A-TATACA-A----TTGGGTCGGGTCA---CAAGTTCTTACAACGTTA--GTTACGACCCTTCCCTAAATACAATATTACATAGAATT---------AATGCAT--GGC-T-AA-AANGTTAT--TAG-------AA-----AGTT---ATACTTTT-ATAAA-CAAATNCAATGCTTAAGCGAAAACAAACATATTCTCTGAATA---------GTATA-----------CAATATACA--TG-TA------AACACTGGGAAGAATAAGTAA--AG-AGT---GC-GAAATGCTTAGTACAT---TG-ATCAA-ACAGAGGA-------------TA-AACAGTANTTCGA-AAA-GATAANAGTGG-------AAAGATAGAAGAGAA-GAAG---ATATA-TAC-ATGTACATGTCAACCAAACATCATTGCTCTGTAATTTAACATTAATCATTAGGCGGTATATG-TGGTCGAAAGCG-TCCACTCTCTTTAA-TAAACTT-ATGAACGCATCT--AATTA-A--ATGTTCATTAT-GTTCTTGCTTTAA--------TTCGGTGTTTCCATACAAGATAATGTTTATATTAAGCGGGT-GANAGTTTCTTGTAGATTGAAAAAGTTGG
gi|1 : ATTT-TA-TTGCCATA------T-A-TATATATA----TA----CGGGTAA---CAAGACCTTACAACGTTA--GTTACGACCATTATCTAAATACAATAATGCATAGAATT---------AATGTAT--GGC-T-AACCATACTAT--TAG-------AA-----AGTTCAAGTATTCTT-------CAAATTCAGTACC------------------TTCGCTAAACA---------TTATA-----------CAATGTGCA--TG-TA------AATAGTGAGAAGAATAAATAAATAA-AGT---AC-AAAAGGCTTAATACAT---AG-A
gi|10 : gtatgtagtgagtattaacgtattaccatcctgtgtgtgagatattcttacagtctgatcaggcaaacatacacaaacatgtctaaatattattatttgaaaagtccaaatatgcttaaatttttgcactttcgagaaaaatggcaacattttataaatttggaaatatttaagaaacgctaaattatgattgaaatatatgtcaccttctccgcataactatgtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttttatttatttctacacattttcatataattattgaatcatttgttatataaatagtatcatgtatcctcaagggtctcagggccatctggaatttttgtgaataaaacatatataaaaacatTAATTTT-TTAAA-TAAATGTAATGCTTAAGCGAACGCAAACATATTCTCTGAATA---------GCATA-----------CACTGTACA--TG-TA------AACACTGGGAAGAATGAGTAA--AGGATT---GC-GAAATGCTTAGTACAT---TG-ATCAA-ACAGAGGA-------------TA-AACAGTAATTTGA-AAA-GATAATAGTGG-------AAAGATAGAAAAGAA-GATG---ATATA-TAC-ATATACAT-------------CAT-GCTCTGTAA-----CATTAGTCATTAGGTTGTTTATG-TGGGAGAAAGCG-TCCACTCTCTTTAA--AAATTC-ATGTATGCATCT--AATTA-A--ATATTCATTAT-ATTCTTGCTTTAA--------TTC
gi|11 : ATGCTTAAGCGAAAACAAAC-T-TTCTCAGAGTA---------GTATA-----------CAATATACA--TG-TA------AACACTGGGAAGATTAAGTAA--AG---T---AC-GAAATGCTTAGTACAT---TG-ATCAA-GCAGAGGA-------------TA-AACAGTAATTTGA-AAA-GATAATAGTGG-------AAAGATAGAAGAGAA-TA------TATA-AAC-ATGTACATGTCAACCAAACATCATTGCTCTGTAATTTAACATTAATCATTAGGCGGTAAATG-TGGTCGAAAGCG-TCCACTCTCTTTAA-TAAACTT-ATGAACGCATCT--ATTTA-A--ATGCTCATTAT-GTTCTTGCTTTAA--------TTCGGT
gi|12 : GCAT--GAC-T-AA-AAGGTTAT--TATTTACATTAGTTTTTAGTT---ATATTTTT-ATAAA-TAAACACAATGCTTAAGGGAAAACAAACATACTTT
gi|12 : ATTCTGCGAATAC--------AT-TA-----------CAATATTCA--TG-TA------ATAACTAGGATGAATAAGTAA--A---------------TGCTTAGGATAT---TG-ACCAA-ACAGAGGA-------------TA-AACAGTAATTTGA-ATA-GATAACAGTGG-------AAAGATAGAAGAGAC-GAAA---ATAAA-AAC-ATGTACATGTCAACCAAACATCATTGCTCGGTGATgtcaaggacgtgtatagacgtctatgtaattccttgattctgcgaatacattacaatattcatgtaataactaggatgaataagtaaatgcttaggatattgaccaaacagaggataaacagtaatttgaatagataacagtggaaagatagaagagacgaaaataaaaacatgtacatgtcaaccaaacatcattgctcggtgatat
gi|13 : gcatgactaaaaggttattatttacattagtttttagttatatttttataaataaacacaatgcttaagggaaaacaaacatactttgtcaaggacgtgtatagacgtctatgtaattccttgGAAAACAAACATATTCTCTGAATA---------GTATA-----------CAATATACA--TG-TA------AACAATGGCAAGAATATGTAA--AG---T---GC-GAAATGCTTAGTTCAT---TG-ATCAA-ACAAAGGA-------------TA-AACAGTTATTTGA-AAA-AATAATAGTGG-------AAAGATAGAAGAGAA----G---ATATA-TGC-ATGTACATGTCAACCAAACACCATTGCTCTGTAATTCATCATTAATCATTAGGCGGTATATG-TGGTCGAAAGCG-TCCACTCTATTTAA-TAAACTT-ATGAATGCATCC--AATTA-A--ATGTTTATTAT-GTTCTTGCTTTAA---------TCGGTat
gi|14 : -----------CAATATACACATG-TA------AACAATGGGAAGAATAAGTCA--AG---T---GC-GAAATGCTTAGTACAT---TG-ATCAA-GCAGAGGA----------------AACAGTGATTTGA-AAAAGATAATAGTGG-------AACGATA-------------------TA-TAC-ATGTACATGTCAACCAAACATCAATGCTCTGTAATTTAACATTAATCATTAGGCAGTATATA-TGGTCGAAAGTG-TCCACTCTGTTTAA-TAAACTT-ATGAACGCATCT--AACTACA--GTGT
gi|15 : ---------AATGTATTTGGT-T-TA-AGCATCATACTAT-------TA-----AATT---ATACTTTT-GAAAA-CAAATTTAATGCTTAAG---AAATAAAAATATTATGTGAGTA---------GTATA-----------CAAAATACG--TGCTATC----AATATT---AAAAATAAG------G-A---------------TTATTACGTTG-TG-AT-AA-A-AGATGA-------------TT-AA---TATTTCGT-AAA-GATCAGAACGA-------GAATATGGAAGA-----AAG---GTGTCTTGCTGTGTA-ATGT------AACAT--------------------TTAAT-ATTAGGCGTTATGTG-TGGTCAAAGGCGATCTTCTCT-TTTAA-aaccacaggcaatatttttagagttttatttggt
gi|16 : ctgATTT-TA-TTGCCATA------A-A--------A----TTGGGTCGATTCT---CAAGTTGTTACAAACTTG--GTATTGACCCTGCCCTAAATACAATATTACATATAATT---------AATGCAT--TGC-T-AA-AAAATAAT--TAG-------AA-----AGTaa
gi|16 : tctaatCATGTCAGCCAAACATCTTTTCTCTGTGATTTAACATTTATCATTAGGTGGCTTGTG-TGGTGGAAAGCA-TCCA--TTCTTTAA-CAAACTT-ATAAATGCATCT--TATTA-A--ATGTTCA-CAT-ATTTTTGCTTTAcgcatgtcagccaaacatcttttctctgtgatttaacatttatcattaggtggcttgtgtggtggaaagcatccattctttaacaaacttataaatgcatcttattaaatgttcacatatttttgcttta
gi|18 : tctaatattttattgccataaaattgggtcgattctcaagttgttacaaacttggtattgaccctgccctaaatacaatattacatataattaatgcattgctaaaaaataattagaaagtcgTTAACATTAATCATTAGGCGGTATATG-TGGTCGAAGGCG-TCCACTCTCTTTAA-TAAACTTAATG-ATGCATTT--AATTA-A--ATGTTCATTAT-GTTCTTGCTTTAA--------TTCGGTGTTTCCATACAAGATAATGTTTATATTACGCGGTT-GAAAGTTTCTTGTAGATTG--AAAGTTGG
gi|19 : aTA-----------CAATATACA--TT-TA------AACAATAAGAAGAAGAAATAA--AG-AGTTGTGC----ATGCTTTATACGT---AG-ATCAA-ACAGAAGACAAATTGTGACGATA-AATAGCATTTCAT-AAT-GATAAGAGTGGGAAGTGGAAAAATGGAactttttgagttgtcaatcta
gi|2 : CATTT-TAATTACCATA------A-A-TATACA-A----TTGGGTCTGGTCA---CACGTTCTTATAATGTTA--GTTATGACTCTTCCCTGAATACAATATTACATAGCTTT---------AATACAT--GGC-T-TA-AGTGACTT--TAC-------AA-----AGTT---ATATTTTTTATAAA-CAAATACAATGCTTAAGCGAAAACAAACATATTTTCTGAATA---------GTATA-----------CAATGTACA--TG-TA------AACACTGGGAAGATTAAATAA--AG-AGGA--GC-GAAATGCTTGGTGCAT---TG-ATCAA-ACAGAATA-------------TA-AAAAGTATTTCGA-AAA-GATAAAAGTGG-------AAAGACAGAAGAGAA-AAAAGACATATA-TAC-ATGTACATGTCAACCAAACGTCATTGCTCTGTGGTTTAACATTAATCGTTTGATGGAATATG-TGGTTGAAAGCG-TCCAGTTTATATAA-TAAACTT-ATGAACGCATAT--AATTA-A--ATGTTCATTAT-GTTCATGCTTTAA--------TTCGGTTTTTCCATACAAGATAATGTTAATGTTGAATGGGTAAAAAAATTCTTGTAGACTGAAAACGTTGGtggcatgagataaaagttagccgaacagtaacactctacgat
gi|20 : -AGT---GC-GAAATTCTTGGTATAT---TGTATT---------GA-------------TA-----GTATTTCGA-AAA-GATGGAAGTGG-------AAAGACAGAAGAGAA-GGAG---ATAT--------GTATATGTCAGTTAAACATCATTGCTCTGTGATTTAACATTAATCATTAGGTAGTATGTG-TGGTCGAAAGCG-TTAAATCTCTTAAAGTAA
gi|21 : agaATTTATA-TTGCCATATACAC-ACA-CACACA-C----TTGGGTCGAGTCA---CACGTTCTTACA-C-TTAAAGTTACGATCCTTCACTA----CAATATTACATAGAACT---------GATGCAG--GGC-T-AG-AACGTTAT--TAG-------AG-----AGTT---ATATTTTT-ATAAA-CAAAT
gi|22 : aacatGCTTAGTACAT---TG-ATCAA-GCAGAGGA-------------TA-AACAGTAATTTGA-AAA-GATAATAGTGG-------AAAGATAGAA---AA-GAAG---ATATG-TAC-ATGTACATGTCAACCAAACATCATTGCTCTGTAATTTAACATTAATCATTAGGCGGTATATG-TGGTC
gi|23 : T--TAG-------AA-----AGTT---ATACTTTT-ATAAA-CAAATACAATGCTTAAGCGAAAACAAACATATTCTCTGAATT---------GTATA-----------CAATATTCA--TG-TA------AACAATGGGGAGAATAAATAA-----AGT---GC-GAAATGCTTAGTACAT---TG-ATCAA-
gi|24 : AT-GTTCTTACTTTAA--------TTCAGTGTGTCCATACAAAATAATGTTTATATTGAGTGAGT-GATAAGTTCTTGTTGATTGAAAAAGTTGG
gi|25 : TCTGTCATCTAACATTAATTATAAGCTGGCAAATA-CGGTCGAAA------TA------TTGA-TAGAAAT-GTGAACACATCT--GAATA-T--ATATGCATTGT-actctttgagttgtgaatcta
gi|26 : gtcgcgT---GC-GAAA-----AGTACAT---TG-ATAAA-ACAGAAGA-------------CT-TAGAGTATTTCGA-AAT-GATGAGAGTTG-------AAAGGTAGACGAGAA-TGAG---ATATT-TAC-ATGTA
gi|27 : TACA-A----TTGTGTTGGGTCA---C------TTAGAATGCTA--GCTACAACCCTTCCCTAAATACAATAGTACGTAGAATA---------AATGCAC--GAC-
gi|28 : ccCTTAGTACAT---TG-ATCAA-GCAGAGGA-------------TA-AACAGTAATTTGA-AAA-GATAATAGTGG-------AAAGATAGAAG---A-GAAA---ATATA-TAC-ATatg
gi|29 : aA-TTGCCATATAAACTA-G-TATACA-A----TTAGGTTTGGTCACATCAAGATCTCACAACATTA--GTCACAATTCTTC
gi|3 : taATTT-TA-TTGCCACA------T-A-CATACA-C----TTGGGTCGGGTCA---CAAGCTCTTACAACGTAA--CTGACGACTCTTCCCTGAATACACTAGTACATAGAATT---------AAAACAT--GGA-TAAA-AAAGTTAT--TGG-------AA-----AGTC---CTGCTTTT--TAAATCAAATCAAATGCTTAAGCGTAAACCAGCACATT------ATAC--------GTAAA-----------AAATGTACA--CG-CA------GACA--GTGAAGTAT---TAA--AG-AGT---TG-GAAAGGCTTCGTATAT---AG-ACTAATAC-GAAGA-------------TAGGAC--TAGGT-GATAAA-GATATGGGAGG-------GAAGACAGAAGAGCA-GGAG---A------------TACCTGTCAGTCGAGTA-----GC-------TTTAACATGAAATATTAGTTGGTACGTA-TTGTTGAAAGCC-ACCACTATCTTTAA-TAAAAGC-ACGAACGCATCT--GAATA-GGCATATTC--TAT-GTac
gi|31 : cctCA---GAAGTTCTAACAGCATTA--GTTACGACCCTTCCCTAAATACAGTATTACattcaattatagtattctttcagaaattactaagaaaattatgattcagatgatcttacaaaaattttgta
gi|32 : ttgT---GC-GACATGCTTAGTACAA---TG-ATTAA-ACAGAAAG-------------TC-AATAGTATTTTGA-AA
gi|33 : ATTT-TA-TTGCCACA------C-A-TATACA-A----TTGGGTC-GGTCG---CAA
gi|4 : atCATTG-TA-TTGGTTTA------A-AATATACA-A----TTTGGTCGGGTCA---CAAATTCTTACAACGTAA--GTTAAGACCCTTTTCTAAA-ACACAATTAACTAAAACT---------AAGGCAT--GGC-T-AA-AA-GTTTT--CAG-------AA-----AGTT---ATAACTTT-ATAAA-CAAATAAAATGCTTAAGCGAAAACAAACGTATTATCTAAAAA---------GAATA-----------CAATATACA--TG-TT------ATCACTGAGAAGAATAAGTAA--AGAAGT---AC-GAAATGCTTATTGCATAAACA-ATTAA-AC
gi|5 : aagcgtatataattattaTCCTTACAACGTTA--GTTACGACTCTTCCC-------------------AATT---------TATGTAT--GGCGT-AA-CAGGT-AT--TAA-------GA-----CGTC---ATGCTTTT-TTAAAACAAATTCAAAGATTAAGCAAAACCTAACATATTATTTGAACATATATGTAGGTATATGCATGCATATCGATGTACA--TA-TATTGTATAACAATGTGAGGAATATGCAA--TG-AGT---TTTGAAATAATTAGTATA-----G-ATCGA-ACAGAAGA-------------CG-AAAAGTAGTTTGT-AAA-TATTAGAGTGG-------AAAGATTGAAAGGCA-G-------TGAA-TAT-ATGTA-AT-TTAACC--------TT--------------CATT----ATTAGCT--TGTATGCTGATCGAAAGCG-ATGA-TTTTTTTAA-TAAA-GT-ATAAACGCATCCGAAATAA-A--ATGTT-GTTTTAGTTCTTGTTTTAAACGGCGAGTTCA--GTTTTAATACATGTTTTTGTATATATgattcgagttcttacaatactatatattttaaatgaaagtaacctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaagaactatttatatcaaagatataataacatgactgtgtagtccgacgaccaataacaaatgcaatgacgaagtgtaccagtcacca
gi|6 : TAT--TAG-------AA-----AGTT---ATACTTTT-ATGAA-CAAAAGCAATGCTTAATCGAAAATAAAGATGTTCTCTGAATA---------GTATA-----------CAATATACA--TG-TA------AACACTGGGAAG------TAA--AG---T---GT-GAAATGCTTAGTACAT---TG-ATCAA-ACGAATGA-------------TA-AATAGTAATTTGA-AAA-GATAGTAGTGG-------AAAGATAGAAGAGAA-GAAG---ATATA-TAA-ATGTACATGTTAAACAAACATCATTGCTCTGTAATTTAACATTAATTATTAGGCGGTATATG-TGGTCGAATACG-TCCACTTTCTTT-A-TGAACGT-ATGAACGCATCT--AATTA-A--ATATTCATTAT-GTTCTTGCTTTAA--------TTCGGTGTTTCCATACAAGATAATGTTTATATTAAGCGGTT-GAGAGTTTCTTGTAGATTGAAAAACTTGG
gi|7 : ACA--TG-CA------AACACTTGGAAGAATATCTAA--AG-AATA--GC-AAAATGCTGAGTACGT---TC-ATCAA-ACAGAAGA-------------TA-AATAGTATTTTGA-AAA-GATAATAACGT-------AAAGGTAGTAGAAAAAGAAG---ATATA-TAC-ATGTGCATGTCAACCAAACAGCATTGCTCTGAGATTTACTATTAATCATTATGTCGTATGTG-CAATCGAAAGCG-TCAACTATCTTTAA-TAAACTT-CTGAAAGTTTCT--AATAA-A--ATGTGCATCAT-GTTCTTGTTTTGA--------TTCGGTGTTTCGATACAAGATAATGTTTATCTAAAACGGGT-GATATTTTCTTGTATATTGAAAAGGTTGactctttgagttgtgaatct
gi|8 : A--GTTACGACCCTTCCCTAAATACAATATTACATAAAGTT---------AATGCAT--GGC-T-AA-AATGTTGT--TAG-------AA-----ATTT---ATACCTTT-ATAAA-CAAATACAATGCTTAAGCGAAAACAAACATATTCTCTGAAGA---------GTATA-----------CAATATACA--TG-TA------AACACTGGGAAGAATATGTAA-----AGT---GC-CAAATACTTAGTACAT---TG-CTCAA-ACAGAGGA-------------TA-AACAGTAATTTGA-AAA-GATAATAGTGG-------AAAGATAGAAG---G-GAAC---ATATA-TGC-ATGTACATGTCAACCGAACATCATTGCTCTGTAATTTAACATTAATCATTAGGTGGTACATA-TGGTCagtttgaatcta
gi|9 : TGCCA--------A-A-TATAAA-AAAAATTTGATTGGAACA---AAAGTTCTGGCAAAGCTA--GTTACGACCCTTGCCTAAATACTATACTACGTAGACTCGTGGAAAGAAAAAAAT--G-C-T-AA-ACATTTAT--TAG-------AA-----AGTT---ATGCATTT-ATAAA-CAAAATCAATGCATTATTGAAAGCAAACACATTCTCTAAACA---------GTATA-----------GAATGTACA--TG-TA------AACACTGTGAAAAATAAACAA--AG-AAT---CC-G--------------T---TA-AGTAA-AGAGAAGA-------------TA-AAAAGAAGTATAC-AAA-AATTAGAGCGG-------AAAGATAGAAG------------------TAA-ATG--------AACT--ACG-CATTGCTCTGTAATTT
blockSeqs : A A TACACAC A . AAAA G CAT AA T GTGGAAAGA TT G A . G AC TTACATT TTTTT . TA T G TATATGTAG TGCATGCATAT CA C TTGTAT C . AGTTGT T AAA T T CAAATTGTGACGA G C A T T A T GAAGTGG AGAAAAAAGAC CT T A T A C A C C G A GA C GC A ACGGCGAG A A AA
blockSeqs : . . TAAACTA . . . G . . T . . . . . C . . . . T A A C . . . TC C . GATT . TG . . . . C A T . . C . AAAAAGAAG A . A T G . . C A . . . . . . . . T AG
blockSeqs : . . A . . . G . . T . . . . . A . . . . A . T C . . . . C . AGGA . . . . . . C A T . . T . AGACGAAA A . A C A . . C G . . . . . . . . G GT
blockSeqs : . . A . . . G . . G . . . . . T . . . . G . A . . . . . A . AAGT . . . . . . C A T . . T . AGAAGGAG A . A T A . . C C . . . . . . . . T TT
blockSeqs : . . T . . . A . . G . . . . . C . . . . A . A . . . . . A . AATA . . . . . . T T C . . G . AGAATGAG A . A T G . . C C . . . . . . .
blockSeqs : . . C . . . G . . T . . . . . A . . . . A . C . . . . . T . AGT . . . . . . A T C . . G . AGCAGGAG A . A T G . . G A . . . . . . .
blockSeqs : . A . . . G . . T . . . . . G . . . . A . A . . . . . A . AGT . . . . . . C T C . . A . AGAAGAAG G . A T G . . A C . . . . . . .
blockSeqs : A . . . T . . T . . . . . T . . . . T . T . . . . . C . AGT . . . . . . G T C . . A . AGAATA T . A T A . . C C . . . . . . .
blockSeqs : . . T . . C . . . . . A . . . . A . G . . . . . A . AGT . . . . . . C A T . . T . AAGAAG A . G T C . . C T . . . . . .
blockSeqs : . . . . . . . . . . . . . A . A . . . . . C . AGT . . . . . . C T C . . G . AGAAG A . A T A . . C C . . . . . .
blockSeqs : . . . . . . . A . T . . . . . A . AAT . . . . . . T A T . . T . AGAAA A . A G G . . . C . . . . . .
blockSeqs : . . . . . . . . . . C . T . . . . . . A G T . . G . GGCAG A . G T A . . . . .
blockSeqs : . . . . . C . T . . . . . . T T T . . G . GGAAC A . . . A . . . . .
blockSeqs : . . . . C . T . . . . . . T G T . . T . AAAG . . . . . .
blockSeqs : . . . . C . A . . . . . . C A T . . T . . . . . . . .
blockSeqs : . . . . . T . . . . . . A T T . . T . . . . .
blockSeqs : . . . . . . . . A T . . G .
blockSeqs : . . . . . . . G . .
blockSeqs : . . . .
blockSeqs : . . .
blockSeqs : . .
blockSeqCons : *** A* **
originalCons : CATTT-TA-TTGCCATA------A-A-TATACA-A----TTGGGTCGGGTCA---CAAGTTCTTACAACGTTA--GTTACGACCCTTCCCTAAATACAATATTACATAGAATT---------AATGCAT--GGC-T-AA-AANGTTAT--TAG-------AA-----AGTT---ATACTTTT-ATAAA-CAAATNCAATGCTTAAGCGAAAACAAACATATTCTCTGAATA---------GTATA-----------CAATATACA--TG-TA------AACACTGGGAAGAATAAGTAA--AG-AGT---GC-GAAATGCTTAGTACAT---TG-ATCAA-ACAGAGGA-------------TA-AACAGTANTTCGA-AAA-GATAANAGTGG-------AAAGATAGAAGAGAA-GAAG---ATATA-TAC-ATGTACATGTCAACCAAACATCATTGCTCTGTAATTTAACATTAATCATTAGGCGGTATATG-TGGTCGAAAGCG-TCCACTCTCTTTAA-TAAACTT-ATGAACGCATCT--AATTA-A--ATGTTCATTAT-GTTCTTGCTTTAA--------TTCGGTGTTTCCATACAAGATAATGTTTATATTAAGCGGGT-GANAGTTTCTTGTAGATTGAAAAAGTTGG
finalCons : CATTT-TA-TTGCCATA------A-A-TATACA-A----TTGGGTCGGGTCA---CAAGTTCTTACAACGTTA--GTTACGACCCTTCCCTAAATACAATATTACATAGAATT---------AATGCAT--GGC-T-AA-AANGTTAT--TAG-------AA-----AGTT---ATACTTTTA-TAAA-CAAATNCAATGCTTAAGCGAAAACAAACATATTCTCTGAATA---------GTATA-----------CAATATACA--TG-TA------AACACTGGGAAGAATAAGTAA--AG-AGT---GC-GAAATGCTTAGTACAT---TG-ATCAA-ACAGAGGA-------------TA-AACAGTANTTCGA-AAA-GATAANAGTGG-------AAAGATAGAAGAGAA-GAAG---ATATA-TAC-ATGTACATGTCAACCAAACATCATTGCTCTGTAATTTAACATTAATCATTAGGCGGTATATG-TGGTCGAAAGCG-TCCACTCTCTTTAA-TAAACTT-ATGAACGCATCT--AATTA-A--ATGTTCATTAT-GTTCTTGCTTTAA--------TTCGGTGTTTCCATACAAGATAATGTTTATATTAAGCGGGT-GANAGTTTCTTGTAGATTGAAAAAGTTGG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TACGACAAACATATACAATACCATAACAAGCATAGATAATGAGTACATTGTACAAGCTATTTAACGATTAAAATTCTTACAATAATATAAATTTATAATGACATTAACCTGTAATAATAATTAAGAGCTATGTATATCAAAGATATCGTATTATATAGTTTCAATGCAGTCTAATAAAAAAAACAAGACTATGTTGTCCGGCGACTGATGGCGAATGCAATGAAGCATTTTACCTGTCACAAG
Unaligned ( gi|30 ): GTATTACCATCCTGTACGCGAGATATACTTTTTCTTACAGCTTGAACATATCCAAATATCTTTAAAT
Alignments
lowQualScore : 22222222 111111111 1111111 111111111 11111111111 111111 1111111 1111111111111 111111111111 11111111
lowQualScore : 5 5 77777777 4 4 8888 1 666 44 1 444444444 44 3 3 3 4 44 0000000 77777 555 66 6 1 0 777777777 11111111111 33 2 000000 2 33 2222222 2 555 1 1 0 1111111111111 2 2 1 3 2 2 1 7777777 222222222222 22 2 2 2 1 2 2 4 1 2 3 44 3 44 3 66666666 8 1 22 0
lowQualScore : . . ........ . . .... . ... .. . ......... .. . . . . .. ....... ..... ... .. . . . ......... ........... .. . ...... . .. ....... . ... . . . ............. . . . . . . . ....... ............ .. . . . . . . . . . . .. . .. . ........ . . .. .
lowQualScore : 7 0 88888888 4 0 5555 6 444 66 3 555555555 66 3 6 6 5 22 0000000 77777 888 88 2 0 5 111111111 99999999999 22 4 000000 7 22 7777777 0 777 8 9 7 6666666666666 1 6 0 6 1 2 0 2222222 777777777777 99 4 0 6 1 5 9 3 9 9 3 66 3 66 3 11111111 0 0 44 8
consensus : CATTT-TA-TTGCCATA------A-A-TATACA-A----TTGGGTCGGGTCA---CAAGTTCTTACAACGTTA--GTTACGACCCTTCCCTAAATACAATATTACATAGAATT---------AATGCAT--GGC-T-AA-AANGTTAT--TAG-------AA-----AGTT---ATACTTTT-ATAAA-CAAATNCAATGCTTAAGCGAAAACAAACATATTCTCTGAATA---------GTATA-----------CAATATACA--TG-TA------AACACTGGGAAGAATAAGTAA--AG-AGT---GC-GAAATGCTTAGTACAT---TG-ATCAA-ACAGAGGA-------------TA-AACAGTANTTCGA-AAA-GATAANAGTGG-------AAAGATAGAAGAGAA-GAAG---ATATA-TAC-ATGTACATGTCAACCAAACATCATTGCTCTGTAATTTAACATTAATCATTAGGCGGTATATG-TGGTCGAAAGCG-TCCACTCTCTTTAA-TAAACTT-ATGAACGCATCT--AATTA-A--ATGTTCATTAT-GTTCTTGCTTTAA--------TTCGGTGTTTCCATACAAGATAATGTTTATATTAAGCGGGT-GANAGTTTCTTGTAGATTGAAAAAGTTGG
Reference ( family-768 ) : CATTT-TA-TTGCCATA------A-A-TATACA-A----TTGGGTCGGGTCA---CAAGTTCTTACAACGTTA--GTTACGACCCTTCCCTAAATACAATATTACATAGAATT---------AATGCAT--GGC-T-AA-AANGTTAT--TAG-------AA-----AGTT---ATACTTTT-ATAAA-CAAATNCAATGCTTAAGCGAAAACAAACATATTCTCTGAATA---------GTATA-----------CAATATACA--TG-TA------AACACTGGGAAGAATAAGTAA--AG-AGT---GC-GAAATGCTTAGTACAT---TG-ATCAA-ACAGAGGA-------------TA-AACAGTANTTCGA-AAA-GATAANAGTGG-------AAAGATAGAAGAGAA-GAAG---ATATA-TAC-ATGTACATGTCAACCAAACATCATTGCTCTGTAATTTAACATTAATCATTAGGCGGTATATG-TGGTCGAAAGCG-TCCACTCTCTTTAA-TAAACTT-ATGAACGCATCT--AATTA-A--ATGTTCATTAT-GTTCTTGCTTTAA--------TTCGGTGTTTCCATACAAGATAATGTTTATATTAAGCGGGT-GANAGTTTCTTGTAGATTGAAAAAGTTGG
gi|1 : ATTT-TA-TTGCCATA------T-A-TATATATA----TA----CGGGTAA---CAAGACCTTACAACGTTA--GTTACGACCATTATCTAAATACAATAATGCATAGAATT---------AATGTAT--GGC-T-AACCATACTAT--TAG-------AA-----AGTTCAAGTATTCTT-------CAAATTCAGTACC------------------TTCGCTAAACA---------TTATA-----------CAATGTGCA--TG-TA------AATAGTGAGAAGAATAAATAAATAA-AGT---AC-AAAAGGCTTAATACAT---AG-A
gi|10 : gtatgtagtgagtattaacgtattaccatcctgtgtgtgagatattcttacagtctgatcaggcaaacatacacaaacatgtctaaatattattatttgaaaagtccaaatatgcttaaatttttgcactttcgagaaaaatggcaacattttataaatttggaaatatttaagaaacgctaaattatgattgaaatatatgtcaccttctccgcataactatgtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttttatttatttctacacattttcatataattattgaatcatttgttatataaatagtatcatgtatcctcaagggtctcagggccatctggaatttttgtgaataaaacatatataaaaacatTAATTTT-TTAAA-TAAATGTAATGCTTAAGCGAACGCAAACATATTCTCTGAATA---------GCATA-----------CACTGTACA--TG-TA------AACACTGGGAAGAATGAGTAA--AGGATT---GC-GAAATGCTTAGTACAT---TG-ATCAA-ACAGAGGA-------------TA-AACAGTAATTTGA-AAA-GATAATAGTGG-------AAAGATAGAAAAGAA-GATG---ATATA-TAC-ATATACAT-------------CAT-GCTCTGTAA-----CATTAGTCATTAGGTTGTTTATG-TGGGAGAAAGCG-TCCACTCTCTTTAA--AAATTC-ATGTATGCATCT--AATTA-A--ATATTCATTAT-ATTCTTGCTTTAA--------TTC
gi|11 : ATGCTTAAGCGAAAACAAAC-T-TTCTCAGAGTA---------GTATA-----------CAATATACA--TG-TA------AACACTGGGAAGATTAAGTAA--AG---T---AC-GAAATGCTTAGTACAT---TG-ATCAA-GCAGAGGA-------------TA-AACAGTAATTTGA-AAA-GATAATAGTGG-------AAAGATAGAAGAGAA-TA------TATA-AAC-ATGTACATGTCAACCAAACATCATTGCTCTGTAATTTAACATTAATCATTAGGCGGTAAATG-TGGTCGAAAGCG-TCCACTCTCTTTAA-TAAACTT-ATGAACGCATCT--ATTTA-A--ATGCTCATTAT-GTTCTTGCTTTAA--------TTCGGT
gi|12 : GCAT--GAC-T-AA-AAGGTTAT--TATTTACATTAGTTTTTAGTT---ATATTTTT-ATAAA-TAAACACAATGCTTAAGGGAAAACAAACATACTTT
gi|12 : ATTCTGCGAATAC--------AT-TA-----------CAATATTCA--TG-TA------ATAACTAGGATGAATAAGTAA--A---------------TGCTTAGGATAT---TG-ACCAA-ACAGAGGA-------------TA-AACAGTAATTTGA-ATA-GATAACAGTGG-------AAAGATAGAAGAGAC-GAAA---ATAAA-AAC-ATGTACATGTCAACCAAACATCATTGCTCGGTGATgtcaaggacgtgtatagacgtctatgtaattccttgattctgcgaatacattacaatattcatgtaataactaggatgaataagtaaatgcttaggatattgaccaaacagaggataaacagtaatttgaatagataacagtggaaagatagaagagacgaaaataaaaacatgtacatgtcaaccaaacatcattgctcggtgatat
gi|13 : gcatgactaaaaggttattatttacattagtttttagttatatttttataaataaacacaatgcttaagggaaaacaaacatactttgtcaaggacgtgtatagacgtctatgtaattccttgGAAAACAAACATATTCTCTGAATA---------GTATA-----------CAATATACA--TG-TA------AACAATGGCAAGAATATGTAA--AG---T---GC-GAAATGCTTAGTTCAT---TG-ATCAA-ACAAAGGA-------------TA-AACAGTTATTTGA-AAA-AATAATAGTGG-------AAAGATAGAAGAGAA----G---ATATA-TGC-ATGTACATGTCAACCAAACACCATTGCTCTGTAATTCATCATTAATCATTAGGCGGTATATG-TGGTCGAAAGCG-TCCACTCTATTTAA-TAAACTT-ATGAATGCATCC--AATTA-A--ATGTTTATTAT-GTTCTTGCTTTAA---------TCGGTat
gi|14 : -----------CAATATACACATG-TA------AACAATGGGAAGAATAAGTCA--AG---T---GC-GAAATGCTTAGTACAT---TG-ATCAA-GCAGAGGA----------------AACAGTGATTTGA-AAAAGATAATAGTGG-------AACGATA-------------------TA-TAC-ATGTACATGTCAACCAAACATCAATGCTCTGTAATTTAACATTAATCATTAGGCAGTATATA-TGGTCGAAAGTG-TCCACTCTGTTTAA-TAAACTT-ATGAACGCATCT--AACTACA--GTGT
gi|15 : ---------AATGTATTTGGT-T-TA-AGCATCATACTAT-------TA-----AATT---ATACTTTT-GAAAA-CAAATTTAATGCTTAAG---AAATAAAAATATTATGTGAGTA---------GTATA-----------CAAAATACG--TGCTATC----AATATT---AAAAATAAG------G-A---------------TTATTACGTTG-TG-AT-AA-A-AGATGA-------------TT-AA---TATTTCGT-AAA-GATCAGAACGA-------GAATATGGAAGA-----AAG---GTGTCTTGCTGTGTA-ATGT------AACAT--------------------TTAAT-ATTAGGCGTTATGTG-TGGTCAAAGGCGATCTTCTCT-TTTAA-aaccacaggcaatatttttagagttttatttggt
gi|16 : ctgATTT-TA-TTGCCATA------A-A--------A----TTGGGTCGATTCT---CAAGTTGTTACAAACTTG--GTATTGACCCTGCCCTAAATACAATATTACATATAATT---------AATGCAT--TGC-T-AA-AAAATAAT--TAG-------AA-----AGTaa
gi|16 : tctaatCATGTCAGCCAAACATCTTTTCTCTGTGATTTAACATTTATCATTAGGTGGCTTGTG-TGGTGGAAAGCA-TCCA--TTCTTTAA-CAAACTT-ATAAATGCATCT--TATTA-A--ATGTTCA-CAT-ATTTTTGCTTTAcgcatgtcagccaaacatcttttctctgtgatttaacatttatcattaggtggcttgtgtggtggaaagcatccattctttaacaaacttataaatgcatcttattaaatgttcacatatttttgcttta
gi|18 : tctaatattttattgccataaaattgggtcgattctcaagttgttacaaacttggtattgaccctgccctaaatacaatattacatataattaatgcattgctaaaaaataattagaaagtcgTTAACATTAATCATTAGGCGGTATATG-TGGTCGAAGGCG-TCCACTCTCTTTAA-TAAACTTAATG-ATGCATTT--AATTA-A--ATGTTCATTAT-GTTCTTGCTTTAA--------TTCGGTGTTTCCATACAAGATAATGTTTATATTACGCGGTT-GAAAGTTTCTTGTAGATTG--AAAGTTGG
gi|19 : aTA-----------CAATATACA--TT-TA------AACAATAAGAAGAAGAAATAA--AG-AGTTGTGC----ATGCTTTATACGT---AG-ATCAA-ACAGAAGACAAATTGTGACGATA-AATAGCATTTCAT-AAT-GATAAGAGTGGGAAGTGGAAAAATGGAactttttgagttgtcaatcta
gi|2 : CATTT-TAATTACCATA------A-A-TATACA-A----TTGGGTCTGGTCA---CACGTTCTTATAATGTTA--GTTATGACTCTTCCCTGAATACAATATTACATAGCTTT---------AATACAT--GGC-T-TA-AGTGACTT--TAC-------AA-----AGTT---ATATTTTTTATAAA-CAAATACAATGCTTAAGCGAAAACAAACATATTTTCTGAATA---------GTATA-----------CAATGTACA--TG-TA------AACACTGGGAAGATTAAATAA--AG-AGGA--GC-GAAATGCTTGGTGCAT---TG-ATCAA-ACAGAATA-------------TA-AAAAGTATTTCGA-AAA-GATAAAAGTGG-------AAAGACAGAAGAGAA-AAAAGACATATA-TAC-ATGTACATGTCAACCAAACGTCATTGCTCTGTGGTTTAACATTAATCGTTTGATGGAATATG-TGGTTGAAAGCG-TCCAGTTTATATAA-TAAACTT-ATGAACGCATAT--AATTA-A--ATGTTCATTAT-GTTCATGCTTTAA--------TTCGGTTTTTCCATACAAGATAATGTTAATGTTGAATGGGTAAAAAAATTCTTGTAGACTGAAAACGTTGGtggcatgagataaaagttagccgaacagtaacactctacgat
gi|20 : -AGT---GC-GAAATTCTTGGTATAT---TGTATT---------GA-------------TA-----GTATTTCGA-AAA-GATGGAAGTGG-------AAAGACAGAAGAGAA-GGAG---ATAT--------GTATATGTCAGTTAAACATCATTGCTCTGTGATTTAACATTAATCATTAGGTAGTATGTG-TGGTCGAAAGCG-TTAAATCTCTTAAAGTAA
gi|21 : agaATTTATA-TTGCCATATACAC-ACA-CACACA-C----TTGGGTCGAGTCA---CACGTTCTTACA-C-TTAAAGTTACGATCCTTCACTA----CAATATTACATAGAACT---------GATGCAG--GGC-T-AG-AACGTTAT--TAG-------AG-----AGTT---ATATTTTT-ATAAA-CAAAT
gi|22 : aacatGCTTAGTACAT---TG-ATCAA-GCAGAGGA-------------TA-AACAGTAATTTGA-AAA-GATAATAGTGG-------AAAGATAGAA---AA-GAAG---ATATG-TAC-ATGTACATGTCAACCAAACATCATTGCTCTGTAATTTAACATTAATCATTAGGCGGTATATG-TGGTC
gi|23 : T--TAG-------AA-----AGTT---ATACTTTT-ATAAA-CAAATACAATGCTTAAGCGAAAACAAACATATTCTCTGAATT---------GTATA-----------CAATATTCA--TG-TA------AACAATGGGGAGAATAAATAA-----AGT---GC-GAAATGCTTAGTACAT---TG-ATCAA-
gi|24 : AT-GTTCTTACTTTAA--------TTCAGTGTGTCCATACAAAATAATGTTTATATTGAGTGAGT-GATAAGTTCTTGTTGATTGAAAAAGTTGG
gi|25 : TCTGTCATCTAACATTAATTATAAGCTGGCAAATA-CGGTCGAAA------TA------TTGA-TAGAAAT-GTGAACACATCT--GAATA-T--ATATGCATTGT-actctttgagttgtgaatcta
gi|26 : gtcgcgT---GC-GAAA-----AGTACAT---TG-ATAAA-ACAGAAGA-------------CT-TAGAGTATTTCGA-AAT-GATGAGAGTTG-------AAAGGTAGACGAGAA-TGAG---ATATT-TAC-ATGTA
gi|27 : TACA-A----TTGTGTTGGGTCA---C------TTAGAATGCTA--GCTACAACCCTTCCCTAAATACAATAGTACGTAGAATA---------AATGCAC--GAC-
gi|28 : ccCTTAGTACAT---TG-ATCAA-GCAGAGGA-------------TA-AACAGTAATTTGA-AAA-GATAATAGTGG-------AAAGATAGAAG---A-GAAA---ATATA-TAC-ATatg
gi|29 : aA-TTGCCATATAAACTA-G-TATACA-A----TTAGGTTTGGTCACATCAAGATCTCACAACATTA--GTCACAATTCTTC
gi|3 : taATTT-TA-TTGCCACA------T-A-CATACA-C----TTGGGTCGGGTCA---CAAGCTCTTACAACGTAA--CTGACGACTCTTCCCTGAATACACTAGTACATAGAATT---------AAAACAT--GGA-TAAA-AAAGTTAT--TGG-------AA-----AGTC---CTGCTTTT--TAAATCAAATCAAATGCTTAAGCGTAAACCAGCACATT------ATAC--------GTAAA-----------AAATGTACA--CG-CA------GACA--GTGAAGTAT---TAA--AG-AGT---TG-GAAAGGCTTCGTATAT---AG-ACTAATAC-GAAGA-------------TAGGAC--TAGGT-GATAAA-GATATGGGAGG-------GAAGACAGAAGAGCA-GGAG---A------------TACCTGTCAGTCGAGTA-----GC-------TTTAACATGAAATATTAGTTGGTACGTA-TTGTTGAAAGCC-ACCACTATCTTTAA-TAAAAGC-ACGAACGCATCT--GAATA-GGCATATTC--TAT-GTac
gi|31 : cctCA---GAAGTTCTAACAGCATTA--GTTACGACCCTTCCCTAAATACAGTATTACattcaattatagtattctttcagaaattactaagaaaattatgattcagatgatcttacaaaaattttgta
gi|32 : ttgT---GC-GACATGCTTAGTACAA---TG-ATTAA-ACAGAAAG-------------TC-AATAGTATTTTGA-AA
gi|33 : ATTT-TA-TTGCCACA------C-A-TATACA-A----TTGGGTC-GGTCG---CAA
gi|4 : atCATTG-TA-TTGGTTTA------A-AATATACA-A----TTTGGTCGGGTCA---CAAATTCTTACAACGTAA--GTTAAGACCCTTTTCTAAA-ACACAATTAACTAAAACT---------AAGGCAT--GGC-T-AA-AA-GTTTT--CAG-------AA-----AGTT---ATAACTTT-ATAAA-CAAATAAAATGCTTAAGCGAAAACAAACGTATTATCTAAAAA---------GAATA-----------CAATATACA--TG-TT------ATCACTGAGAAGAATAAGTAA--AGAAGT---AC-GAAATGCTTATTGCATAAACA-ATTAA-AC
gi|5 : aagcgtatataattattaTCCTTACAACGTTA--GTTACGACTCTTCCC-------------------AATT---------TATGTAT--GGCGT-AA-CAGGT-AT--TAA-------GA-----CGTC---ATGCTTTT-TTAAAACAAATTCAAAGATTAAGCAAAACCTAACATATTATTTGAACATATATGTAGGTATATGCATGCATATCGATGTACA--TA-TATTGTATAACAATGTGAGGAATATGCAA--TG-AGT---TTTGAAATAATTAGTATA-----G-ATCGA-ACAGAAGA-------------CG-AAAAGTAGTTTGT-AAA-TATTAGAGTGG-------AAAGATTGAAAGGCA-G-------TGAA-TAT-ATGTA-AT-TTAACC--------TT--------------CATT----ATTAGCT--TGTATGCTGATCGAAAGCG-ATGA-TTTTTTTAA-TAAA-GT-ATAAACGCATCCGAAATAA-A--ATGTT-GTTTTAGTTCTTGTTTTAAACGGCGAGTTCA--GTTTTAATACATGTTTTTGTATATATgattcgagttcttacaatactatatattttaaatgaaagtaacctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaagaactatttatatcaaagatataataacatgactgtgtagtccgacgaccaataacaaatgcaatgacgaagtgtaccagtcacca
gi|6 : TAT--TAG-------AA-----AGTT---ATACTTTT-ATGAA-CAAAAGCAATGCTTAATCGAAAATAAAGATGTTCTCTGAATA---------GTATA-----------CAATATACA--TG-TA------AACACTGGGAAG------TAA--AG---T---GT-GAAATGCTTAGTACAT---TG-ATCAA-ACGAATGA-------------TA-AATAGTAATTTGA-AAA-GATAGTAGTGG-------AAAGATAGAAGAGAA-GAAG---ATATA-TAA-ATGTACATGTTAAACAAACATCATTGCTCTGTAATTTAACATTAATTATTAGGCGGTATATG-TGGTCGAATACG-TCCACTTTCTTT-A-TGAACGT-ATGAACGCATCT--AATTA-A--ATATTCATTAT-GTTCTTGCTTTAA--------TTCGGTGTTTCCATACAAGATAATGTTTATATTAAGCGGTT-GAGAGTTTCTTGTAGATTGAAAAACTTGG
gi|7 : ACA--TG-CA------AACACTTGGAAGAATATCTAA--AG-AATA--GC-AAAATGCTGAGTACGT---TC-ATCAA-ACAGAAGA-------------TA-AATAGTATTTTGA-AAA-GATAATAACGT-------AAAGGTAGTAGAAAAAGAAG---ATATA-TAC-ATGTGCATGTCAACCAAACAGCATTGCTCTGAGATTTACTATTAATCATTATGTCGTATGTG-CAATCGAAAGCG-TCAACTATCTTTAA-TAAACTT-CTGAAAGTTTCT--AATAA-A--ATGTGCATCAT-GTTCTTGTTTTGA--------TTCGGTGTTTCGATACAAGATAATGTTTATCTAAAACGGGT-GATATTTTCTTGTATATTGAAAAGGTTGactctttgagttgtgaatct
gi|8 : A--GTTACGACCCTTCCCTAAATACAATATTACATAAAGTT---------AATGCAT--GGC-T-AA-AATGTTGT--TAG-------AA-----ATTT---ATACCTTT-ATAAA-CAAATACAATGCTTAAGCGAAAACAAACATATTCTCTGAAGA---------GTATA-----------CAATATACA--TG-TA------AACACTGGGAAGAATATGTAA-----AGT---GC-CAAATACTTAGTACAT---TG-CTCAA-ACAGAGGA-------------TA-AACAGTAATTTGA-AAA-GATAATAGTGG-------AAAGATAGAAG---G-GAAC---ATATA-TGC-ATGTACATGTCAACCGAACATCATTGCTCTGTAATTTAACATTAATCATTAGGTGGTACATA-TGGTCagtttgaatcta
gi|9 : TGCCA--------A-A-TATAAA-AAAAATTTGATTGGAACA---AAAGTTCTGGCAAAGCTA--GTTACGACCCTTGCCTAAATACTATACTACGTAGACTCGTGGAAAGAAAAAAAT--G-C-T-AA-ACATTTAT--TAG-------AA-----AGTT---ATGCATTT-ATAAA-CAAAATCAATGCATTATTGAAAGCAAACACATTCTCTAAACA---------GTATA-----------GAATGTACA--TG-TA------AACACTGTGAAAAATAAACAA--AG-AAT---CC-G--------------T---TA-AGTAA-AGAGAAGA-------------TA-AAAAGAAGTATAC-AAA-AATTAGAGCGG-------AAAGATAGAAG------------------TAA-ATG--------AACT--ACG-CATTGCTCTGTAATTT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TACGACAAACATATACAATACCATAACAAGCATAGATAATGAGTACATTGTACAAGCTATTTAACGATTAAAATTCTTACAATAATATAAATTTATAATGACATTAACCTGTAATAATAATTAAGAGCTATGTATATCAAAGATATCGTATTATATAGTTTCAATGCAGTCTAATAAAAAAAACAAGACTATGTTGTCCGGCGACTGATGGCGAATGCAATGAAGCATTTTACCTGTCACAAG
Unaligned ( gi|30 ): GTATTACCATCCTGTACGCGAGATATACTTTTTCTTACAGCTTGAACATATCCAAATATCTTTAAAT