lowQualScore : 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 1111 11 11111111 5555555555555555555555 111111111111 11111 11111 1 55555555555555555 11 111111 1 222222222222 222222222222 11111111111 1111111 1 111111 1 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1
lowQualScore : 77 3 2 5 8 2 4444 0 77 2 2 444 777777 0 5 55 00000000 3 0 555 88 4 44 6666 2 77777 9999999999999999999999 3 4 3 2 4 4444 3 6 111111111111 3 99999 3 55 3 55 3 00000 4 4 777 1 5 22222 7 4 22222222222222222 66 00 777 999999 5 3 555555555555 333333333333 66666666666 88 55 1111111 2 7 4 9 6 55 55 111111 5 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 5
lowQualScore : .. . . . . . .... . .. . . ... ...... . . .. ........ . . ... .. . .. .... . ..... ...................... . . . . . .... . . ............ . ..... . .. . .. . ..... . . ... . . ..... . . ................. .. .. ... ...... . . ............ ............ ........... .. .. ....... . . . . . .. .. ...... . ................................................................................................. .
lowQualScore : 33 6 0 1 9 5 1111 8 44 5 8 444 111111 2 0 99 22222222 1 5 444 55 9 22 1111 9 11111 5555555555555555555555 1 2 1 2 8 5555 3 7 222222222222 6 11111 6 00 6 00 6 00000 0 0 000 4 0 55555 0 0 88888888888888888 99 22 000 555555 2 6 000000000000 666666666666 55555555555 66 00 8888888 3 3 6 1 8 55 55 555555 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0
consensus : TAAATT-NAAAATA-GCACTCTCNAAACTGCGNTGTT-CAGNT-CATTCGCTTTTN-G-TTGAAACCGGGAGA---CACA--CCAATAT-ACC-ATAC-------GAACA-AAGAA---TATGC--TTTTTAT--GTAACTCT----GG-AGA-----AATA------GA------A------T-TTCATG-TAATAATGAAATGTGCGTNTTATGATGATTT--GNGAAATCAGTATCTTTC-AGA-ATTTTTG-----A-----ATGGT-A-----ACCA-TAATGGAT-TAAATTTATTCTATAAATTAATGAGTACA--CAAAAC-GATAATTTGTTGATAAAA-----CTCTCCAAATGTGTACTA-GA-A---ATGTTCAATAAACGGAAATACTTTATTCAAGTCCAAAC-TGAAACAAA-----CTAAAATATGAT-----T-----A-----CACCGTT-ATAAGATTCAAT-TAACACTTGTAA---AGAC------GATATAACATTTTAGACACTCTATGTT-TGATAATTCA------------TATG------------TGTTTTCT----------CTTTT--TATTCCTG--ATA-------TTGCCTTTATCC-TTTTGGCACATTGTTGTATTA--T--TATA------ATATTTGTGTGTATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTCATAAAATGATTGA---TAAT-TGTTTCCTTTTGCTTGTTTTTAAAAAGAA
Reference ( gi|1 ) : TAAATT-GAAAATA-GCACTCTCTAAACTACGATGTT-CAGAT-CATTCACTTTTA-G-TTGAAACCGGAAGA---CACA--CCAATAT-ACA-ATAC-------GAACA-AAGAA---TATGC--TTTTCAT--GTAACTCT----GG-AGA-----AATA------GA------A------T-TCCATG-TAATAATGAAATGTGCGTATTATGATGATTT--GAGAAATCAGTATCTTTC-AGA-ATTTTTG-----A-----ATGGT-A-----ACCA-TAATGGAT-TAAATTTATTCTATAAATTAATGAGTACA--CAAAAC-GATAATTTGTTGATAAAA-----CTCTCCAAATGTGTACTA-GA-A---ATGTTCAATAAACGGAAATACTTTATTCAAGTCCAAAC-TGAAACAAA-----CTAATACATGAT-----T-----A-----CACCGTT-GTAAGATTCAAC-TAACACTTGTAA---AGAC------GATATAACATTTTAGACAATCTATGTT-TGATAATTCA------------TATG------------TGTTTTCT----------TTTTT--TATTCCTG--ATA-------TTGTCTTTATCC-TTTTGGCATATTATTGTATAA--T--TATA------ATATTTGGGTGTATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC---------AAAATGATTGGTATTAATATGTTTC--TCAGCTCG---TTAAAAACAACAG
gi|6 : TAAATT-GAAAATA-GCACCCTCTAAACTACGGTGTT-CAGCT-CATTCACTTTTA-G-TTGAAACCGAAAGT---AACA--CCAATAT-ACC-ATAC-------GAACA-AAGAA---TATGC--TTTTTAT--GTAACT------GG-AGA-----AATA------GAGGACGAA------T-TTCATG-TAATAATGAATTGTGCGTATTATGATGCTTT--GAGAAATCAGTATCTTTC-AGA-ATTTTTG-----A-----ATGGT-A-----ATCA-TTATGGAT-TAAATTTATTCTATAAAT--------ACA--CAAAAC-GATGATTTGTTGATAACA-----CTCTCCAAATGTGTATTA-TA-A---ATGTTCAATAAACGGAAATACTTTATTCAAGTCTAAAC-TGAAACAAA-----CTAAAATATGAT-----T-----ATGCTACACCGTT-ATAAGATTCAAT-TAACACTTGTAA---AGAC------GATATAACATTTAATACACTCTATGTT-TGATAATTCA------------TATG------------TGTTTTCT----------CTTTT--TATTCCTG--ATA-------TTGCCTTTATCC-TTTTGTCACATTGTTGTATTA--T--TATA------ATATTTGTTTGTATT
gi|2 : TAAATT-GAAAATA-ACACTCTCTAAACTACGATGTT-CAGCT-CATTCACCTTTA-G-TTGAAACCGGAA-----CACA--T------------------------ACA-AAGAC---TATGC--TTTTTAT--GTAACTCT----GG-AGA-----AATA------GAGGACGAA------T-TTCATG-TAATAATGAAATGTGCGTATTATGATGATTT--GAGAAATCAGTATTTATC-TGA-TTTTTTG-----A-----ATGGT-A-----ATCA-TAATGGAT-TAAATTTATTCTATAAATTAATGATTACA--CAAAAC-GATAATTTGTTGATAAAA-----CTCTCCAAATGTGTACTA-GA-A---ATGTTCAATAAACGGAAATATTTTATTCAAGCCCAAAC-TGAAAGAAA-----CTAAAATATGATTATGCT-----A-----CACCGTT-GTAAGATTCAAA-TAACACTTGTAA---ATACT-----GATATAACATTTTAGACACTCTATGTT-TGATAATTCA------------TATG------------TGTTTTCC----------CTTTT--TATTCCTG--ATA-------TTATCTTTATCC-TTTTAGCGCATTGTTGTACTA--T--TATA------CTAGTTGTGTGTATTtgtaatatgggccggtggcctcagttacttgaataaac
gi|5 : tTAAATT-GAAAATA-GCACTCTCTAAACTACGATGTT-CAGCT-CATTCACTTCTA-G-TTGAAACCGGAAGA---CACA--ACAATAT-ACC-ATAC-------GAACA-AAGAA---CATGC--TTTTCAT--CTAACTCT----GG-AGA-----AATA------GAGGACGAA------T-TTCATG-TAATAATGAAATGTACGTATTACGATGATTT--GAGAAATCAGTATCTTTT-AGA-ATTTTTG-----A-----ATGGT-T-----ACCA-TAATGGAT-TAAATTTATTTTATAAATTAACGAGAACA--CAAAAC-GATAATTTGTTGATAAAA-----CTCTCCAAATGTGTACTA-GA-A---ATGTTCAATAAACGGAAATACTTTACTTAAGTCCAAAC-TGTAACAAA-----CTAAAATATGATTATGCT-----A-----CAGCGTT-ATAAGGCTCAAT-TAACATTTGTAA---GGAC------GATATAACATTTTAGACACTCTATATT-TGATAAGTCA------------TATA------------TGTTTTCC----------TTT----------TGGCACA-------TTG------------TTG---TATT--------A--T--TATA------ACATTTGTGTGTATTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgccaaa
gi|7 : AAATA-TAAAATT-GCACTCTCAAAACTGCGTTGCT-CAAAA-CATTCGTTATTT-G-TTGAAACAGGGAGA---CATG--CAAATGTTGCTTATGC-------TGATA-GAG-----TATGT--ATTTTGT--GTAACTCA----CA-AGA-----AATAGAAGATGA------A------T-TTCACG-CTGTCATGACATGTACCTTTTATAACGATCT--ACGTAACCAATATCTTGC-TGATATTATTAACTATA-----ACGATCACAACTACCA-TAATGTAT----ATGAATTCTACAGTTTGATGAGTACAACCAATTCTGACAA---GATAATCAAA-----CTGGCAAAGTTTGTATTT-GA-G---ATGTTTAATAAA-AGAACT-CTTTACC----TCCAATCTTAAAACAAAATGACTTAAAACATAAT-----nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgtgaaaaa
gi|13 : taaacgtgtaacagattgtgctctgcaaaattggcatgctgatgtccatgaatcaagaaaagctattcattataagcactttaaaacgcaactaaacgttgagcaataccttactttgaaaatccctttaAAATT-TAAAACA-GCACTCTCTAAATT---------------------CCTTTATG-TTGAAACTGGAAGA---CATA--ACAATCT-CCC-ACAT-------AAACA-AAGAA---TATGCTTTTTTTTT--GTAACTCT----GG-AGA-----AATga
gi|16 : taaatgtttgactgttccctaaaaaaactggcacgcagatttagatcaatggagtgaaactacacataatcagtattttaaaactattctagctgtagaaaggtatctcactttgagaatcccaacgAAATA-TAAAATT-GCACTCTCAAAACTGCGTTGTT-CAAAC-CATTCGTTATTT-G-TTGAAACAGGGAGA---C----------AT-ACA----------------A-AAG-----T-TGC--TT---AT--G-----CT----GATAGATTATTAAGAC-----GA------A------T-TTCACGCTGAC-ATGACATGTACCTTTTATAAAGATCT--ACGTAACCAATATCTTtgcggatgtttttcat
gi|23 : aaacattgagcaataccttactttgaaaatccctttaAAATTTGAAAAAATGTCCTCTCTTATTTCCGATGCT-CAAGT-CATTCGCTTTTT-A-TTGAAACTGGCAGA---CA-----TAATA--ACA-ATgct
gi|8 : AATT-TAAAACA-GCACTCTCTAAATT---------------------CCTTTATG-TTGAAACTGGAAGA---CATA--ACAATCT-CCC-ACAT-------AAACA-AAGAA---TATGC--TTTTTTTTTGTAACTCT----GG-AG------------------------------------------------AAAT-TGCG------GATGTTTTTCATGAAATAATTATCCTTCGAAA-ATGTGT------A-----ACGGT-A------CTAGTAATGGAT-TAAATTTCTTCTATAAAT-AATGAATATA--CAAAAC-AATAATT----GATAGAA-----ATCTGCAAATGTGTACTA-GA-A---CTGTTCAATAAACAGAA-----TTAT-----TCCAAGC-AGACCTAAA-----TTAAAATATGAT-----T-----A-----------T-GCAA----CACCGCAACATTTGTAA---ATGCTGGGTTGATATAACATTTTAGACACTTGATGTT-TGTTAACTCAAAT---------TATAAT----------TCTTTTC-----------TTTTC--TATTCCTG--CTA-------TTATCTTTATCG-TTGAGGCACATTGTTGTtgacaacgca
gi|15 : ATT-AAGTATA-GCTCTTACGCGATTGCG-TGTTTCTGCT-CAT-CGATTTGA-GATTGATACTGGGAGATGGCACAAGCCAA-AT-ATA-ATACCTAAAGAGAACA-GAAAA---TGTTC--TTT--AT--GT--CTCTTATTGG-A-A-----GAT-------GA------A------TATCC-TT-TATTATTGAAATGTGTTTTATATAATGATCT--CAGAAA-CA-TATATTTC-AAA-ttt
gi|4 : AAATA-GCACTCTCTAAACTACGATGTC-CAACT-CATTCATTTTTA-G-TTGAAACCAGAAGA---CACA--CCAATAT-ACC-ATAC-------GAACA-AAGAA---TATGC--CTTTTAT--GTTACTCT----GG-AGA-----AATA------GA------AGACGAAT-TTCATG-TAATAATGAAATGTGCGTATTATGATGATTT--GAGAAATCAGTATCTTTC-AGA-ATTTTTG-----A-----ATGGT-A-----ACCA-TAATGGAT-TAAATTTATTCTATAAATTAATGAGTACA--CAAAAC-GATAATTT-TTGACAAAA-----CTCTCC--------------A-A---ATGTTCAATAAACGGAAATACTTTATTCAAGTCCAAAC-TGAAACAAA-----TTTAAATATGAC-----TATGCAA-----CACCGTT-ATAATATTCAAT-TAACACATGTTA---AGAC------GATATAACATTTTAGACACTCTATGTT-TGATAATTTG------------TATA------------TGTTTTCT----------CTTTT--TATTCCTG--ATA-------TTGCCTTTATCC-TTTTGGCACACTGTTGTATTA--T--TATA------ATATTTGTGTGTATTccatacatttagtaaaa
gi|3 : -GCCCTCTCTAAACTACAATGTT-CAGCG-CATTCACTTTTA-G-TTGAAACCGGAAGA---CACA--CCAATAT-AAC-ATAC-------GAACA-AAGAA---TATAC--TTTTTAT--GTAACTCT----GG-AGA-----AATAAGGAC-GA------A------T-TTCATG-TAATAATGAAATGTGCGTATTATGATGATTT--GAAAAATCAGTATCTTTC-AGA-ATTTTTT-----A-----ATGGT-A-----TCCT-TAATGGAT-AAAATTTATTCTATAAATAAATGAGTACA--CAAAAC-GATAATTTATTTATAAAA-----CTCTCCAAATGTGTACTA-GA-A---ATTTTCAATAAACGAAAATACTTTATTCAAGTTCAAAC-TGAAACAAA-----CTAAAATATGATTATGCT-----A-----CACCGTT-ATAAGATTCAAT-TAACACTTGTAA---ATACT-----GATGAAACATTTTAGACACTTT-TTTT-TTATAATTCA------------TATG------------TGTTTTCT----------CTTTC--TATTCCTG--ATA-------TTGCCTTTATCCTTTTTGGCACATTGTTGTATTA--T--TATA------ATATTTGTGTGTATTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgtcata
gi|24 : CACTCTCAAAACTGCGTTGTT-CAAAA-CATTCGTTATTT-G-TTGAAACAGGGAGA---CATA--TAAATGT-nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgtca
gi|18 : ACTCTCAAAACTGCGTTGTT-CAAAA-CATTCGTTATTT-G-TTGAAACAGGGAGA---CATA--CAAATGTTGCTTATGC-------TGATA---GAA---TATGT--ATTTTGT--GTAACTCA----CA-AGA-----AATAGAAGATGA------A------T-TTCACG-CTGTCATAACATGTACCTTTTATAACGATCT--ACGTAACTAATATCTTtgcttatgctgatagagtatgtat
gi|25 : ACTCTCAGAACTGCGTTGTT-CAAAA-CATTCATTATTT-G-TTGAAACAGGGAGA---CATA--CAAATGT-gct
gi|10 : tATTACGTTGTT-CA-ATGCATTCATTAGTT-G-TTGAAACTGGGAGA---CATT--CTAATGT-CCC-TTAT-------GAAGATAAGTATTTTATGTAATTCACAT--GTAA--TT----GA-AG-------AT-------GA------A------T-TCTATG-TAGTCATGAATTTTACCTTCTACCAAGATAT--GCGTGAACAATATCTTAC-AAATATCATTA-----AAAGTTATAGT-A-----ATCA-TAATGTGTACGAATTT----TATAGATCAGTGGGGACC--CAGGAC-ATTAGTTAATTAAAAAAAAAAACCTTGTCAGATTTGT-TTATGA-A---ATGTTTGAAAAAC----ATACTATAtactta
gi|14 : GTT-CAGCT-CATTCACTTTTA-G-TTGAAACCGGAAGA---CATT--CCAATAT-ACC-ATAC-------GAACA-AAGAA---TATGC--TTTTTAT--GAAACCCT----GG-AGA-----AATATAGGACGA------A------T-TTCATG-TAATAATGAAATGTGCGTATTATGATGATTT--GAGAAATCAGTATCTTTC-AGA-ATTTTTG-----A-----ATGGT-A-----ACC--TAATGGAT-TAAATTTATTCTATAAATTAATGAGTACA--CAAAAC-GATAATTTGTTGATccatcttctgatagaataagaattagaataataa
gi|17 : cCTCT----GG-AGA-----AATA------GAGGACGAA------T-TTCATG-TAATAATGATATGTGCGTTTGATGATAATTT--ACGAAATCAGTATCTATC-CG--ATTTTTT-----A-----ATCGA-A-----ACCA-TAATGCA-------TCATTCAATAAATTAATAAGTACA--CAAAAC-GATGACTTGTTGATAACA------TCTCCTAATGTATGATA-GATAAGTATGTTCAACA
gi|9 : ATCAGTATCTTTC-AGA-ATTTC-G-----A-----ATGGT-A-----ACCA-TAATGGAT-TAAATTTATTCTATAAATTAATGAGTACA--CAAATC-GATAATTTGTCGATAAAA-----CTCTCCAAATGTGTACTA-GA-A---ATGTTCAATAAACGGAAATACTTTATTCAAGTCCAAAC-TGAAACAAA-----CTAAAATATGAT-----T-----ATGCTTCACCGTT-ATCAGATTAAAT-TAACACTTGTAA---AGAC------GATATAACATTTTAGACACTCTATGTT-TGATAATTCA------------TATG------------TGTTTTCT----------CTTTT--TATTCCTG--ATA-------TTGCATTTATCC-TTTTGGCACATTGTTGTATTA--T--TATA------ATATTTGTGTGTATT
gi|12 : -----T-----A-----CATCGTC-ATAAGATTAAAT-TAAAACTTGTAA---AGAC------GATATAACATTT--------CTATGTT-TGATAATTCA------------TATG------------TGTTTTCT----------CTTTT--TATTCCTG--ATA-------TTGCCTTTATCC-TTTTGGCACATTGTTGTATTA--T--TATA------ATATTTGTGTGTATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTCATAAAATGATTGA---TAAT-TGTTTCCTTTTGCTTGTTTTTAAAAAGAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnactgtcaa
gi|11 : gcACCGTTTATAAGATTCAAG-AAACACTTGTCACCTGGTT------GATATAACATTTTAGATACTCGATGTT-TGTTAATTCAAATTTTGTTTTTTGTGGGGGATTTAATTTGTTTTGT----------TTTTTC-TATTCTTA--ATA-------TTGTCTTTATCCTTTTTGGTACATTGTTGTATTA--CTATATA------ATATTTGTGTATATTatcag
gi|19 : GATTCAAT-TAGCACTTGTAA---ATGC------CA------AGTTTAGATATTCGATGTTGTCGTTTTTGT------------TATG------------TATTTTGT----------CT------ATCCTAA--ATA-------GTGTCTTTATTT-TTTTGGCACATTGATGTATTACTT--TATA------ATATTTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatacagctggatttttagcttatactgtcattctcaatggtatggaacaaagcattaataagccaaa
gi|22 : ATGTT-TATTAATTCA------------TACG------------TTTTTTTTGTGTGTGTTGTTTTTCCTCTTCCGG--ATAATATGTATTGTCTTTGTCC-TTTTGGCACATTGTTGTATTA--T--TATACTGTATATATTTttgtacacatgtatcatgtgccggtaccttagattgattgaataaac
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|20 ): TACAAATATTGCTTATTTTGATAGATTATGTATTTTATGTAATTCACAAGAAAGAGAGGATGAATATTTCACGTTGTCAAGACAACGTTCTTTTACAGCGACCCACGTAACTAATATCTTGCTGA
Unaligned ( gi|21 ): ACAAATATTGCTTATTTTGATAGATTATGTATTTTATGTAATTCACAAGAAAGAGAGGATGAATATTTCACGTTGTCAAGACAACGTTCTTTTACAGCGACCCACGTAACTAATATCTTGCTGAT
Unaligned ( gi|26 ): TGTATTATGGGCCGGTGACCTGAATTACTTTAATAAACTTTTGTCACTGCCATTACAGTCATTG
Unaligned ( gi|27 ): TTTCACGCTGTCATGACATGTACCTTTTATAACGATCTACGTAACCAATATCTTGCTGAT
Unaligned ( gi|28 ): ATTTCACGCTGTCATGACATGTACCTTTTATAACGATCTACGTAACCAATATCTTGCTGA
Unaligned ( gi|29 ): ACTATTGTCATTGTCATTGATGTTTAAAGGAACAATGTGTTACAAACCAAA
Alignments
lowQualScore : 5555555555555555555555 11111 55555555555555555 111111 222222222222 222222222222 1111111111 1111111 6666666666666666666666666666666666666666666666666666666 333 2 11 222
lowQualScore : 8888 1 1 2 666 4 0 1 2 2 444 33 1 2 333 666 9999999 1 33 33 88888888 444 2 8888888888888888888888 2 2 33 1 3 6 999999 88888 3 88888 3 33 2 44 3 99999 3 3 666 0 4 11111 66666666666666666 4 666 777777 3 222222222222 111111111111 4444444444 77 0000000 2 3 3 55 55 8888888888888888888888888888888888888888888888888888888 555 0 88 4 111 2
lowQualScore : .... . . . ... . . . . . ... .. . . ... ... ....... . .. .. ........ ... . ...................... . . .. . . . ...... ..... . ..... . .. . .. . ..... . . ... . . ..... ................. . ... ...... . ............ ............ .......... .. ....... . . . .. .. ....................................................... ... . .. . ... .
lowQualScore : 0000 0 7 8 888 4 2 0 4 1 111 22 9 5 666 222 3333333 0 99 99 00000000 777 7 5555555555555555555555 9 0 99 0 1 2 333333 33333 3 33333 3 88 6 66 3 11111 6 6 444 1 4 11111 44444444444444444 0 444 777777 3 999999999999 777777777777 6666666666 99 8888888 2 3 3 00 00 0000000000000000000000000000000000000000000000000000000 000 0 00 0 555 5
consensus : TAAATTN---AAAATAGCACTCTCTAAACTGCGNTGTTCAGNNCATTCGCTTTTNG-TTGAAACCGGGAGA---CATA--CCAA-TA--TAC-CATAC-------GAACAAAGAATATGC--TTTTTAT--GTAACTC---T----GGA---GAA-ATA------GA------A------TTTCATG-TAATAATGAAATGTGCGTNTTATGATGATTT--GAGAAATCAGTATCTTTC-AGA-ATTTTTG-----A-----ATGGT-A-----ACCA-TAATGGAT-TAAATTTATTCTATAAATTAATGAGTACA--CAAAAC-GATAATTTGTTGATAAAA-----CTCTCCAAATGTGTACTA-GA-A---ATGTTCAATAAACGGAAATACTTTATTCAAGTCCAAAC-TGAAACAAA-----CTAAAATATGAT-----T-----A-----CACCGTT-ATAAGATTCAATTAACACTTGTAA---AGAC------GATATAACATTTTAGACACTCTATGTT-TGATAATTCA------------TATG------------TGTTTTCT----------CTTTT--TATTCCTGATA-------TTGCCTTTATCC-TTTT-GGCACATTGTTGTATTA--T--TATAATATTTGTGTGTATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCNATT-TCATAAAATGATTGGTATTAATATGTTTCCTTCNGCTCGTTTTTAAAAANAA
Reference ( family-736 ) : TAAATTN---AAAATAGCACTCTCNAAACTGCGNTGTTCAGNTCATTCGCTTTTNG-TTGAAACCGGGAGA---CACA--CCAA-TA--TAC-CATAC-------GAACAAAGAATATGC--TTTTTAT--GTAACTC---T----GGA---GAA-ATA------GA------A------TTTCATG-TAATAATGAAATGTGCGTNTTATGATGATTT--GNGAAATCAGTATCTTTC-AGA-ATTTTTG-----A-----ATGGT-A-----ACCA-TAATGGAT-TAAATTTATTCTATAAATTAATGAGTACA--CAAAAC-GATAATTTGTTGATAAAA-----CTCTCCAAATGTGTACTA-GA-A---ATGTTCAATAAACGGAAATACTTTATTCAAGTCCAAAC-TGAAACAAA-----CTAAAATATGAT-----T-----A-----CACCGTT-ATAAGATTCAATTAACACTTGTAA---AGAC------GATATAACATTTTAGACACTCTATGTT-TGATAATTCA------------TATG------------TGTTTTCT----------CTTTT--TATTCCTGATA-------TTGCCTTTATCC-TTTT-GGCACATTGTTGTATTA--T--TATAATATTTGTGTGTATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTCATAAAATGATTGA---TAAT-TGTTTCCTTTTGCTTGTTTTTAAAAAGAA
gi|1 : TAAATTG---AAAATAGCACTCTCTAAACTACGATGTTCAGATCATTCACTTTTAG-TTGAAACCGGAAGA---CACA--CCAA-TA--TAC-AATAC-------GAACAAAGAATATGC--TTTTCAT--GTAACTC---T----GGA---GAA-ATA------GA------A------TTCCATG-TAATAATGAAATGTGCGTATTATGATGATTT--GAGAAATCAGTATCTTTC-AGA-ATTTTTG-----A-----ATGGT-A-----ACCA-TAATGGAT-TAAATTTATTCTATAAATTAATGAGTACA--CAAAAC-GATAATTTGTTGATAAAA-----CTCTCCAAATGTGTACTA-GA-A---ATGTTCAATAAACGGAAATACTTTATTCAAGTCCAAAC-TGAAACAAA-----CTAATACATGAT-----T-----A-----CACCGTT-GTAAGATTCAACTAACACTTGTAA---AGAC------GATATAACATTTTAGACAATCTATGTT-TGATAATTCA------------TATG------------TGTTTTCT----------TTTTT--TATTCCTGATA-------TTGTCTTTATCC-TTTT-GGCATATTATTGTATAA--T--TATAATATTTGGGTGTATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC---------AAAATGATTGGTATTAATATGTTTC--TCAGCTCG---TTAAAAACAA
gi|10 : ATTACGTTGTTCAATGCATTCATTAGTTG-TTGAAACTGGGAGA---CATT--CTAA-TG--TCC-CTTAT-------GAA-----GATAAGT--ATTTTAT--GTAATTCACAT----GTAATTGAAGAT-------GA------A------TTCTATG-TAGTCATGAATTTTACCTTCTACCAAGATAT--GCGTGAACAATATCTTAC-AAATATCATTA-----AAAGTTATAGT-A-----ATCA-TAATGTGTACGAATTT----TATAGATCAGTGGGGACC--CAGGAC-ATTAGTTAATTAAAAAAAAAAACCTTGTCAGATTTGT-TTATGA-A---ATGTTTGAAAAAC----ATACTATAcag
gi|11 : ACCGTTTATAAGATTCAAGAAACACTTGTCACCTGGTT------GATATAACATTTTAGATACTCGATGTT-TGTTAATTCAAATTTTGTTTTTTGTGGGGGATTTAATTTGTTTTGT----------TTTTTC-TATTCTTAATA-------TTGTCTTTATCC-TTTTTGGTACATTGTTGTATTA--CTATATAATATTTGTGTATATTccatcttctgatagaataagaattagaataataa
gi|12 : -----T-----A-----CATCGTC-ATAAGATTAAATTAAAACTTGTAA---AGAC------GATATAACATTT--------CTATGTT-TGATAATTCA------------TATG------------TGTTTTCT----------CTTTT--TATTCCTGATA-------TTGCCTTTATCC-TTTT-GGCACATTGTTGTATTA--T--TATAATATTTGTGTGTATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTCATAAAATGATTGA---TAAT-TGTTTCCTTTTGCTTGTTTTTAAAAAGAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatacagctggatttttagcttatactgtcattctcaatggtatggaacaaagcattaataagccaaa
gi|13 : gcAAATTT---AAAACAGCACTCTCTAAA-----------------TTC-CTTTATG-TTGAAACTGGAAGA---CATA--ACAA-TC--TCC-CACAT-------AAACAAAGAATATGCTTTTTTTTT--GTAACTC---T----GGA---GAA-ATatcag
gi|14 : taaatgtttgactgttccctaaaaaaactggcacgcagatttagatcaatggagtgaaactacacataatcagtattttaaaactattctagctgtagaaaggtatctcactttgagaatcccaacgGTTCAGCTCATTCACTTTTAG-TTGAAACCGGAAGA---CATT--CCAA-TA--TAC-CATAC-------GAACAAAGAATATGC--TTTTTAT--GAAACCC---T----GGA---GAA-ATATAGGACGA------A------TTTCATG-TAATAATGAAATGTGCGTATTATGATGATTT--GAGAAATCAGTATCTTTC-AGA-ATTTTTG-----A-----ATGGT-A-----ACC--TAATGGAT-TAAATTTATTCTATAAATTAATGAGTACA--CAAAAC-GATAATTTGTTGATtgcggatgtttttcat
gi|15 : cATTA---AGTATAGCTCTTACGCGATTGCGTGTTTCTGCTCAT-CGATTTGAGATTGATACTGGGAGATGGCACAAGCCAAATA--TA---ATACCTAAAGAGAACA--GAAAATGT--TCTTTAT--GT--CTC---TTATTGGA----AG-AT-------GA------A------TATCCTT-TATTATTGAAATGTGTTTTATATAATGATCT--CAGAAA-CA-TATATTTC-AAA-
gi|16 : AAATAT---AAAATTGCACTCTCAAAACTGCGTTGTTCAAACCATTCGTTATTTG-TTGAAACAGGGAGA---CATA--CAAA--AGTTGCTTATGC-------TGATAGA-------------TTAT---TAA------------GA---CGA-AT-----------------------TTCACGCTGACA-TGACATGTACCTTTTATAAAGATCT--ACGTAACCAATATCTTccatacatttagtaaaa
gi|17 : aaacattgagcaataccttactttgaaaatccctttaCTC---T----GGA---GAA-ATA------GAGGACGAA------TTTCATG-TAATAATGATATGTGCGTTTGATGATAATTT--ACGAAATCAGTATCTATC-CG--ATTTTTT-----A-----ATCGA-A-----ACCA-TAATGCA-------TCATTCAATAAATTAATAAGTACA--CAAAAC-GATGACTTGTTGATAACA------TCTCCTAATGTATGATA-GATAAGTATGTTCAACAgct
gi|18 : ACTCTCAAAACTGCGTTGTTCAAAACATTCGTTATTTG-TTGAAACAGGGAGA---CATA--CAAA-TG--TTG-CTTAT-------GCTGATAGAATATGT--ATTTTGT--GTAACTC---A----CAA---GAA-ATAGAAGATGA------A------TTTCACG-CTGTCATAACATGTACCTTTTATAACGATCT--ACGTAACTAATATCTT
gi|19 : GATTCAATTAGCACTTGTAA---ATGC------CA------AGTTTAGATATTCGATGTTGTCGTTTTTGT------------TATG------------TATTTTGT----------CT------ATCCTAAATA-------GTGTCTTTATTT-TTTT-GGCACATTGATGTATTACTT--TATAATATTTTTGTgct
gi|2 : TAAATTG---AAAATAACACTCTCTAAACTACGATGTTCAGCTCATTCACCTTTAG-TTGAAACCGGAA-----CACA--T--------------------------ACAAAGACTATGC--TTTTTAT--GTAACTC---T----GGA---GAA-ATA------GAGGACGAA------TTTCATG-TAATAATGAAATGTGCGTATTATGATGATTT--GAGAAATCAGTATTTATC-TGA-TTTTTTG-----A-----ATGGT-A-----ATCA-TAATGGAT-TAAATTTATTCTATAAATTAATGATTACA--CAAAAC-GATAATTTGTTGATAAAA-----CTCTCCAAATGTGTACTA-GA-A---ATGTTCAATAAACGGAAATATTTTATTCAAGCCCAAAC-TGAAAGAAA-----CTAAAATATGATTATGCT-----A-----CACCGTT-GTAAGATTCAAATAACACTTGTAA---ATACT-----GATATAACATTTTAGACACTCTATGTT-TGATAATTCA------------TATG------------TGTTTTCC----------CTTTT--TATTCCTGATA-------TTATCTTTATCC-TTTT-AGCGCATTGTTGTACTA--T--TATACTAGTTGTGTGTATTacacatgtatcatgtgccggtaccttagattgattgaataaac
gi|22 : tATGTT-TATTAATTCA------------TACG------------TTTTTTTTGTGTGTGTTGTTTTTCCTCTTCCGGATAATATGTATTGTCTTTGTCC-TTTT-GGCACATTGTTGTATTA--T--TATA----CTGTATATATTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgccaaa
gi|23 : ttcAAATTTGAAAAAATGTC-CTCTCTTATTTCCGATGCTCAAGTCATTCGCTTTTTA-TTGAAACTGGCAGA---CATA--ta
gi|24 : CACTCTCAAAACTGCGTTGTTCAAAACATTCGTTATTTG-TTGAAACAGGGAGA---CATA--TAAA-TG--Tataacaattgacaacgca
gi|25 : ACTCTCAGAACTGCGTTGTTCAAAACATTCATTATTTG-TTGAAACAGGGAGA---CATA--CAAA-TG--Ttgcttatgctgatagagtatgtat
gi|3 : tGCCCTCTCTAAACTACAATGTTCAGCGCATTCACTTTTAG-TTGAAACCGGAAGA---CACA--CCAA-TA--TAA-CATAC-------GAACAAAGAATATAC--TTTTTAT--GTAACTC---T----GGA---GAA-ATAAGGAC-GA------A------TTTCATG-TAATAATGAAATGTGCGTATTATGATGATTT--GAAAAATCAGTATCTTTC-AGA-ATTTTTT-----A-----ATGGT-A-----TCCT-TAATGGAT-AAAATTTATTCTATAAATAAATGAGTACA--CAAAAC-GATAATTTATTTATAAAA-----CTCTCCAAATGTGTACTA-GA-A---ATTTTCAATAAACGAAAATACTTTATTCAAGTTCAAAC-TGAAACAAA-----CTAAAATATGATTATGCT-----A-----CACCGTT-ATAAGATTCAATTAACACTTGTAA---ATACT-----GATGAAACATTTTAGACACTTT-TTTT-TTATAATTCA------------TATG------------TGTTTTCT----------CTTTC--TATTCCTGATA-------TTGCCTTTATCCTTTTT-GGCACATTGTTGTATTA--T--TATAATATTTGTGTGTATTtactta
gi|4 : AAATAGCACTCTCTAAACTACGATGTCCAACTCATTCATTTTTAG-TTGAAACCAGAAGA---CACA--CCAA-TA--TAC-CATAC-------GAACAAAGAATATGC--CTTTTAT--GTTACTC---T----GGA---GAA-ATA------GA------AGACGAATTTCATG-TAATAATGAAATGTGCGTATTATGATGATTT--GAGAAATCAGTATCTTTC-AGA-ATTTTTG-----A-----ATGGT-A-----ACCA-TAATGGAT-TAAATTTATTCTATAAATTAATGAGTACA--CAAAAC-GATAATTT-TTGACAAAA-----CTCTCC--------------A-A---ATGTTCAATAAACGGAAATACTTTATTCAAGTCCAAAC-TGAAACAAA-----TTTAAATATGAC-----TATGCAA-----CACCGTT-ATAATATTCAATTAACACATGTTA---AGAC------GATATAACATTTTAGACACTCTATGTT-TGATAATTTG------------TATA------------TGTTTTCT----------CTTTT--TATTCCTGATA-------TTGCCTTTATCC-TTTT-GGCACACTGTTGTATTA--T--TATAATATTTGTGTGTATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTGTCATAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgtca
gi|5 : TAAATTG---AAAATAGCACTCTCTAAACTACGATGTTCAGCTCATTCACTTCTAG-TTGAAACCGGAAGA---CACA--ACAA-TA--TAC-CATAC-------GAACAAAGAACATGC--TTTTCAT--CTAACTC---T----GGA---GAA-ATA------GAGGACGAA------TTTCATG-TAATAATGAAATGTACGTATTACGATGATTT--GAGAAATCAGTATCTTTT-AGA-ATTTTTG-----A-----ATGGT-T-----ACCA-TAATGGAT-TAAATTTATTTTATAAATTAACGAGAACA--CAAAAC-GATAATTTGTTGATAAAA-----CTCTCCAAATGTGTACTA-GA-A---ATGTTCAATAAACGGAAATACTTTACTTAAGTCCAAAC-TGTAACAAA-----CTAAAATATGATTATGCT-----A-----CAGCGTT-ATAAGGCTCAATTAACATTTGTAA---GGAC------GATATAACATTTTAGACACTCTATATT-TGATAAGTCA------------TATA------------TGTTTTC-----------CTTTT--GGC-----ACA-------TTG---------------------TTGT---ATTA--T--TATAACATTTGTGTGTATT
gi|6 : TAAATTG---AAAATAGCACCCTCTAAACTACGGTGTTCAGCTCATTCACTTTTAG-TTGAAACCGAAAGT---AACA--CCAA-TA--TAC-CATAC-------GAACAAAGAATATGC--TTTTTAT--GTAACT---------GGA---GAA-ATA------GAGGACGAA------TTTCATG-TAATAATGAATTGTGCGTATTATGATGCTTT--GAGAAATCAGTATCTTTC-AGA-ATTTTTG-----A-----ATGGT-A-----ATCA-TTATGGAT-TAAATTTATTCTATAAAT--------ACA--CAAAAC-GATGATTTGTTGATAACA-----CTCTCCAAATGTGTATTA-TA-A---ATGTTCAATAAACGGAAATACTTTATTCAAGTCTAAAC-TGAAACAAA-----CTAAAATATGAT-----T-----ATGCTACACCGTT-ATAAGATTCAATTAACACTTGTAA---AGAC------GATATAACATTTAATACACTCTATGTT-TGATAATTCA------------TATG------------TGTTTTCT----------CTTTT--TATTCCTGATA-------TTGCCTTTATCC-TTTT-GTCACATTGTTGTATTA--T--TATAATATTTGTTTGTATTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgtgaaaaa
gi|7 : AAATAT---AAAATTGCACTCTCAAAACTGCGTTGCTCAAAACATTCGTTATTTG-TTGAAACAGGGAGA---CATG--CAAA-TG--TTG-CTTAT-------GCTGATAGAGTATGT--ATTTTGT--GTAACTC---A----CAA---GAA-ATAGAAGATGA------A------TTTCACG-CTGTCATGACATGTACCTTTTATAACGATCT--ACGTAACCAATATCTTGC-TGATATTATTAACTATA-----ACGATCACAACTACCA-TAATGTAT----ATGAATTCTACAGTTTGATGAGTACAACCAATTCTGACAA---GATAATCAAA-----CTGGCAAAGTTTGTATTT-GA-G---ATGTTTAATAAA-AGAACT-CTTTACC----TCCAATCTTAAAACAAAATGACTTAAAACATAAT-----tgtaatatgggccggtggcctcagttacttgaataaac
gi|8 : taaacgtgtaacagattgtgctctgcaaaattggcatgctgatgtccatgaatcaagaaaagctattcattataagcactttaaaacgcaactaaacgttgagcaataccttactttgaaaatccctttaAATTT---AAAACAGCACTCTCTAAA-----------------TTC-CTTTATG-TTGAAACTGGAAGA---CATA--ACAA-TC--TCC-CACAT-------AAACAAAGAATATGC--TTTTTTTTTGTAACTC---T----GGA---GA-------------------------------------------AAT-TGCG------GATGTTTTTCATGAAATAATTATCCTTCGAAA-ATGTGT------A-----ACGGT-A------CTAGTAATGGAT-TAAATTTCTTCTATAAAT-AATGAATATA--CAAAAC-AATAATT----GATAGAA-----ATCTGCAAATGTGTACTA-GA-A---CTGTTCAATAAACAGAA-----TTAT-----TCCAAGC-AGACCTAAA-----TTAAAATATGAT-----TATGCAA-----CACCG---------------CAACATTTGTAA---ATGCTGGGTTGATATAACATTTTAGACACTTGATGTT-TGTTAACTCAAAT---------TATAAT----------TCTTTTCT-----------TTTC--TATTCCTGCTA-------TTATCTTTATCG-TTGA-GGCACATTGTTGTTTTga
gi|9 : ATCAGTATCTTTC-AGA-ATTTC-G-----A-----ATGGT-A-----ACCA-TAATGGAT-TAAATTTATTCTATAAATTAATGAGTACA--CAAATC-GATAATTTGTCGATAAAA-----CTCTCCAAATGTGTACTA-GA-A---ATGTTCAATAAACGGAAATACTTTATTCAAGTCCAAAC-TGAAACAAA-----CTAAAATATGAT-----T-----ATGCTTCACCGTT-ATCAGATTAAATTAACACTTGTAA---AGAC------GATATAACATTTTAGACACTCTATGTT-TGATAATTCA------------TATG------------TGTTTTCT----------CTTTT--TATTCCTGATA-------TTGCATTTATCC-TTTT-GGCACATTGTTGTATTA--T--TATAATATTTGTGTGTATT
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): TACAAATATTGCTTATTTTGATAGATTATGTATTTTATGTAATTCACAAGAAAGAGAGGATGAATATTTCACGTTGTCAAGACAACGTTCTTTTACAGCGACCCACGTAACTAATATCTTGCTGA
Unaligned ( gi|21 ): ACAAATATTGCTTATTTTGATAGATTATGTATTTTATGTAATTCACAAGAAAGAGAGGATGAATATTTCACGTTGTCAAGACAACGTTCTTTTACAGCGACCCACGTAACTAATATCTTGCTGAT
Unaligned ( gi|26 ): TGTATTATGGGCCGGTGACCTGAATTACTTTAATAAACTTTTGTCACTGCCATTACAGTCATTG
Unaligned ( gi|27 ): TTTCACGCTGTCATGACATGTACCTTTTATAACGATCTACGTAACCAATATCTTGCTGAT
Unaligned ( gi|28 ): ATTTCACGCTGTCATGACATGTACCTTTTATAACGATCTACGTAACCAATATCTTGCTGA
Unaligned ( gi|29 ): ACTATTGTCATTGTCATTGATGTTTAAAGGAACAATGTGTTACAAACCAAA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111
lowQualScore : 5555555555555555555555 11111 55555555555555555 111111 222222222222 222222222222 1111111111 1111111 00000000000000000000000000000000000000000000000000000000000 222 1 11 222
lowQualScore : 8888 1 1 2 555 4 0 1 2 2 444 33 1 2 333 666 9999999 0 1 33 33 88888888 444 2 8888888888888888888888 2 2 33 1 3 6 999999 88888 3 88888 3 33 2 44 3 99999 3 3 666 0 4 11111 66666666666666666 4 666 777777 3 222222222222 111111111111 4444444444 77 0000000 2 3 3 55 55 55555555555555555555555555555555555555555555555555555555555 111 5 88 1 111 1
lowQualScore : .... . . . ... . . . . . ... .. . . ... ... ....... . . .. .. ........ ... . ...................... . . .. . . . ...... ..... . ..... . .. . .. . ..... . . ... . . ..... ................. . ... ...... . ............ ............ .......... .. ....... . . . .. .. ........................................................... ... . .. . ... .
lowQualScore : 0000 3 7 8 888 4 2 0 4 1 111 22 9 5 666 222 3333333 1 0 99 99 00000000 777 7 5555555555555555555555 9 0 99 4 1 2 333333 33333 3 33333 3 88 6 66 3 11111 6 6 444 1 4 11111 44444444444444444 0 444 777777 3 999999999999 777777777777 6666666666 99 8888888 2 3 3 00 00 55555555555555555555555555555555555555555555555555555555555 555 5 00 0 555 0
consensus : TAAATTN---AAAATAGCACTCTCTAAACTGCGNTGTTCAGNNCATTCGCTTTTNG-TTGAAACCGGGAGA---CATA--CCAA-TA--TAC-CATAC-------GAACAAAGAATATGC--TTTTTAT--GTAACTC---T----GGA---GAA-ATA------GA------A------TTTCATG-TAATAATGAAATGTGCGTNTTATGATGATTT--GAGAAATCAGTATCTTTC-AGA-ATTTTTG-----A-----ATGGT-A-----ACCA-TAATGGAT-TAAATTTATTCTATAAATTAATGAGTACA--CAAAAC-GATAATTTGTTGATAAAA-----CTCTCCAAATGTGTACTA-GA-A---ATGTTCAATAAACGGAAATACTTTATTCAAGTCCAAAC-TGAAACAAA-----CTAAAATATGAT-----T-----A-----CACCGTT-ATAAGATTCAATTAACACTTGTAA---AGAC------GATATAACATTTTAGACACTCTATGTT-TGATAATTCA------------TATG------------TGTTTTCT----------CTTTT--TATTCCTGATA-------TTGCCTTTATCC-TTTT-GGCACATTGTTGTATTA--T--TATAATATTTGTGTGTATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC-ATTTTCATAAAATGATTGGTATTAATATGTTTCCTTCNGCTCGTTTTTAAAAANAA
Reference ( family-736 ) : TAAATTN---AAAATAGCACTCTCTAAACTGCGNTGTTCAGNNCATTCGCTTTTNG-TTGAAACCGGGAGA---CATA--CCAA-TA--TAC-CATAC-------GAACAAAGAATATGC--TTTTTAT--GTAACTC---T----GGA---GAA-ATA------GA------A------TTTCATG-TAATAATGAAATGTGCGTNTTATGATGATTT--GAGAAATCAGTATCTTTC-AGA-ATTTTTG-----A-----ATGGT-A-----ACCA-TAATGGAT-TAAATTTATTCTATAAATTAATGAGTACA--CAAAAC-GATAATTTGTTGATAAAA-----CTCTCCAAATGTGTACTA-GA-A---ATGTTCAATAAACGGAAATACTTTATTCAAGTCCAAAC-TGAAACAAA-----CTAAAATATGAT-----T-----A-----CACCGTT-ATAAGATTCAATTAACACTTGTAA---AGAC------GATATAACATTTTAGACACTCTATGTT-TGATAATTCA------------TATG------------TGTTTTCT----------CTTTT--TATTCCTGATA-------TTGCCTTTATCC-TTTT-GGCACATTGTTGTATTA--T--TATAATATTTGTGTGTATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCNA-TTTCATAAAATGATTGGTATTAATATGTTTCCTTCNGCTCGTTTTTAAAAANAA
gi|1 : TAAATTG---AAAATAGCACTCTCTAAACTACGATGTTCAGATCATTCACTTTTAG-TTGAAACCGGAAGA---CACA--CCAA-TA--TAC-AATAC-------GAACAAAGAATATGC--TTTTCAT--GTAACTC---T----GGA---GAA-ATA------GA------A------TTCCATG-TAATAATGAAATGTGCGTATTATGATGATTT--GAGAAATCAGTATCTTTC-AGA-ATTTTTG-----A-----ATGGT-A-----ACCA-TAATGGAT-TAAATTTATTCTATAAATTAATGAGTACA--CAAAAC-GATAATTTGTTGATAAAA-----CTCTCCAAATGTGTACTA-GA-A---ATGTTCAATAAACGGAAATACTTTATTCAAGTCCAAAC-TGAAACAAA-----CTAATACATGAT-----T-----A-----CACCGTT-GTAAGATTCAACTAACACTTGTAA---AGAC------GATATAACATTTTAGACAATCTATGTT-TGATAATTCA------------TATG------------TGTTTTCT----------TTTTT--TATTCCTGATA-------TTGTCTTTATCC-TTTT-GGCATATTATTGTATAA--T--TATAATATTTGGGTGTATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC---------AAAATGATTGGTATTAATATGTTTC--TCAGCTCG---TTAAAAACAA
gi|10 : ATTACGTTGTTCAATGCATTCATTAGTTG-TTGAAACTGGGAGA---CATT--CTAA-TG--TCC-CTTAT-------GAA-----GATAAGT--ATTTTAT--GTAATTCACAT----GTAATTGAAGAT-------GA------A------TTCTATG-TAGTCATGAATTTTACCTTCTACCAAGATAT--GCGTGAACAATATCTTAC-AAATATCATTA-----AAAGTTATAGT-A-----ATCA-TAATGTGTACGAATTT----TATAGATCAGTGGGGACC--CAGGAC-ATTAGTTAATTAAAAAAAAAAACCTTGTCAGATTTGT-TTATGA-A---ATGTTTGAAAAAC----ATACTATAcag
gi|11 : ACCGTTTATAAGATTCAAGAAACACTTGTCACCTGGTT------GATATAACATTTTAGATACTCGATGTT-TGTTAATTCAAATTTTGTTTTTTGTGGGGGATTTAATTTGTTTTGT----------TTTTTC-TATTCTTAATA-------TTGTCTTTATCC-TTTTTGGTACATTGTTGTATTA--CTATATAATATTTGTGTATATTccatcttctgatagaataagaattagaataataa
gi|12 : -----T-----A-----CATCGTC-ATAAGATTAAATTAAAACTTGTAA---AGAC------GATATAACATTT--------CTATGTT-TGATAATTCA------------TATG------------TGTTTTCT----------CTTTT--TATTCCTGATA-------TTGCCTTTATCC-TTTT-GGCACATTGTTGTATTA--T--TATAATATTTGTGTGTATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTCATAAAATGATTGA---TAAT-TGTTTCCTTTTGCTTGTTTTTAAAAAGAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatacagctggatttttagcttatactgtcattctcaatggtatggaacaaagcattaataagccaaa
gi|13 : gcAAATTT---AAAACAGCACTCTCTAAA-----------------TTC-CTTTATG-TTGAAACTGGAAGA---CATA--ACAA-TC--TCC-CACAT-------AAACAAAGAATATGCTTTTTTTTT--GTAACTC---T----GGA---GAA-ATatcag
gi|14 : taaatgtttgactgttccctaaaaaaactggcacgcagatttagatcaatggagtgaaactacacataatcagtattttaaaactattctagctgtagaaaggtatctcactttgagaatcccaacgGTTCAGCTCATTCACTTTTAG-TTGAAACCGGAAGA---CATT--CCAA-TA--TAC-CATAC-------GAACAAAGAATATGC--TTTTTAT--GAAACCC---T----GGA---GAA-ATATAGGACGA------A------TTTCATG-TAATAATGAAATGTGCGTATTATGATGATTT--GAGAAATCAGTATCTTTC-AGA-ATTTTTG-----A-----ATGGT-A-----ACC--TAATGGAT-TAAATTTATTCTATAAATTAATGAGTACA--CAAAAC-GATAATTTGTTGATtgcggatgtttttcat
gi|15 : cATTA---AGTATAGCTCTTACGCGATTGCGTGTTTCTGCTCAT-CGATTTGAGATTGATACTGGGAGATGGCACAAGCCAAATA--TA---ATACCTAAAGAGAACA--GAAAATGT--TCTTTAT--GT--CTC---TTATTGGA----AG-AT-------GA------A------TATCCTT-TATTATTGAAATGTGTTTTATATAATGATCT--CAGAAA-CA-TATATTTC-AAA-
gi|16 : AAATAT---AAAATTGCACTCTCAAAACTGCGTTGTTCAAACCATTCGTTATTTG-TTGAAACAGGGAGA---CATA--CAAA--AGTTGCTTATGC-------TGATAGA-------------TTAT---TAA------------GA---CGA-AT-----------------------TTCACGCTGACA-TGACATGTACCTTTTATAAAGATCT--ACGTAACCAATATCTTccatacatttagtaaaa
gi|17 : aaacattgagcaataccttactttgaaaatccctttaCTC---T----GGA---GAA-ATA------GAGGACGAA------TTTCATG-TAATAATGATATGTGCGTTTGATGATAATTT--ACGAAATCAGTATCTATC-CG--ATTTTTT-----A-----ATCGA-A-----ACCA-TAATGCA-------TCATTCAATAAATTAATAAGTACA--CAAAAC-GATGACTTGTTGATAACA------TCTCCTAATGTATGATA-GATAAGTATGTTCAACAgct
gi|18 : ACTCTCAAAACTGCGTTGTTCAAAACATTCGTTATTTG-TTGAAACAGGGAGA---CATA--CAAA-TG--TTG-CTTAT-------GCTGATAGAATATGT--ATTTTGT--GTAACTC---A----CAA---GAA-ATAGAAGATGA------A------TTTCACG-CTGTCATAACATGTACCTTTTATAACGATCT--ACGTAACTAATATCTT
gi|19 : GATTCAATTAGCACTTGTAA---ATGC------CA------AGTTTAGATATTCGATGTTGTCGTTTTTGT------------TATG------------TATTTTGT----------CT------ATCCTAAATA-------GTGTCTTTATTT-TTTT-GGCACATTGATGTATTACTT--TATAATATTTTTGTgct
gi|2 : TAAATTG---AAAATAACACTCTCTAAACTACGATGTTCAGCTCATTCACCTTTAG-TTGAAACCGGAACA---CATA--C----------------------------AAAGACTATGC--TTTTTAT--GTAACTC---T----GGA---GAA-ATA------GAGGACGAA------TTTCATG-TAATAATGAAATGTGCGTATTATGATGATTT--GAGAAATCAGTATTTATC-TGA-TTTTTTG-----A-----ATGGT-A-----ATCA-TAATGGAT-TAAATTTATTCTATAAATTAATGATTACA--CAAAAC-GATAATTTGTTGATAAAA-----CTCTCCAAATGTGTACTA-GA-A---ATGTTCAATAAACGGAAATATTTTATTCAAGCCCAAAC-TGAAAGAAA-----CTAAAATATGATTATGCT-----A-----CACCGTT-GTAAGATTCAAATAACACTTGTAA---ATACT-----GATATAACATTTTAGACACTCTATGTT-TGATAATTCA------------TATG------------TGTTTTCC----------CTTTT--TATTCCTGATA-------TTATCTTTATCC-TTTT-AGCGCATTGTTGTACTA--T--TATACTAGTTGTGTGTATTacacatgtatcatgtgccggtaccttagattgattgaataaac
gi|22 : tATGTT-TATTAATTCA------------TACG------------TTTTTTTTGTGTGTGTTGTTTTTCCTCTTCCGGATAATATGTATTGTCTTTGTCC-TTTT-GGCACATTGTTGTATTA--T--TATA----CTGTATATATTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgccaaa
gi|23 : ttcAAATTTGAAAAAATGTC-CTCTCTTATTTCCGATGCTCAAGTCATTCGCTTTTTA-TTGAAACTGGCAGA---CATA--ta
gi|24 : CACTCTCAAAACTGCGTTGTTCAAAACATTCGTTATTTG-TTGAAACAGGGAGA---CATA--TAAA-TG--Tataacaattgacaacgca
gi|25 : ACTCTCAGAACTGCGTTGTTCAAAACATTCATTATTTG-TTGAAACAGGGAGA---CATA--CAAA-TG--Ttgcttatgctgatagagtatgtat
gi|3 : tGCCCTCTCTAAACTACAATGTTCAGCGCATTCACTTTTAG-TTGAAACCGGAAGA---CACA--CCAA-TA--TAA-CATAC-------GAACAAAGAATATAC--TTTTTAT--GTAACTC---T----GGA---GAA-ATAAGGAC-GA------A------TTTCATG-TAATAATGAAATGTGCGTATTATGATGATTT--GAAAAATCAGTATCTTTC-AGA-ATTTTTT-----A-----ATGGT-A-----TCCT-TAATGGAT-AAAATTTATTCTATAAATAAATGAGTACA--CAAAAC-GATAATTTATTTATAAAA-----CTCTCCAAATGTGTACTA-GA-A---ATTTTCAATAAACGAAAATACTTTATTCAAGTTCAAAC-TGAAACAAA-----CTAAAATATGATTATGCT-----A-----CACCGTT-ATAAGATTCAATTAACACTTGTAA---ATACT-----GATGAAACATTTTAGACACTTT-TTTT-TTATAATTCA------------TATG------------TGTTTTCT----------CTTTC--TATTCCTGATA-------TTGCCTTTATCCTTTTT-GGCACATTGTTGTATTA--T--TATAATATTTGTGTGTATTtactta
gi|4 : AAATAGCACTCTCTAAACTACGATGTCCAACTCATTCATTTTTAG-TTGAAACCAGAAGA---CACA--CCAA-TA--TAC-CATAC-------GAACAAAGAATATGC--CTTTTAT--GTTACTC---T----GGA---GAA-ATA------GA------AGACGAATTTCATG-TAATAATGAAATGTGCGTATTATGATGATTT--GAGAAATCAGTATCTTTC-AGA-ATTTTTG-----A-----ATGGT-A-----ACCA-TAATGGAT-TAAATTTATTCTATAAATTAATGAGTACA--CAAAAC-GATAATTT-TTGACAAAA-----CTCTCC--------------A-A---ATGTTCAATAAACGGAAATACTTTATTCAAGTCCAAAC-TGAAACAAA-----TTTAAATATGAC-----TATGCAA-----CACCGTT-ATAATATTCAATTAACACATGTTA---AGAC------GATATAACATTTTAGACACTCTATGTT-TGATAATTTG------------TATA------------TGTTTTCT----------CTTTT--TATTCCTGATA-------TTGCCTTTATCC-TTTT-GGCACACTGTTGTATTA--T--TATAATATTTGTGTGTATTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgtca
gi|5 : TAAATTG---AAAATAGCACTCTCTAAACTACGATGTTCAGCTCATTCACTTCTAG-TTGAAACCGGAAGA---CACA--ACAA-TA--TAC-CATAC-------GAACAAAGAACATGC--TTTTCAT--CTAACTC---T----GGA---GAA-ATA------GAGGACGAA------TTTCATG-TAATAATGAAATGTACGTATTACGATGATTT--GAGAAATCAGTATCTTTT-AGA-ATTTTTG-----A-----ATGGT-T-----ACCA-TAATGGAT-TAAATTTATTTTATAAATTAACGAGAACA--CAAAAC-GATAATTTGTTGATAAAA-----CTCTCCAAATGTGTACTA-GA-A---ATGTTCAATAAACGGAAATACTTTACTTAAGTCCAAAC-TGTAACAAA-----CTAAAATATGATTATGCT-----A-----CAGCGTT-ATAAGGCTCAATTAACATTTGTAA---GGAC------GATATAACATTTTAGACACTCTATATT-TGATAAGTCA------------TATA------------TGTTTTC-----------CTTTT--GGC-----ACA-------TTG---------------------TTGT---ATTA--T--TATAACATTTGTGTGTATTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgtcata
gi|6 : TAAATTG---AAAATAGCACCCTCTAAACTACGGTGTTCAGCTCATTCACTTTTAG-TTGAAACCGAAAGT---AACA--CCAA-TA--TAC-CATAC-------GAACAAAGAATATGC--TTTTTAT--GTAACT---------GGA---GAA-ATA------GAGGACGAA------TTTCATG-TAATAATGAATTGTGCGTATTATGATGCTTT--GAGAAATCAGTATCTTTC-AGA-ATTTTTG-----A-----ATGGT-A-----ATCA-TTATGGAT-TAAATTTATTCTATAAAT--------ACA--CAAAAC-GATGATTTGTTGATAACA-----CTCTCCAAATGTGTATTA-TA-A---ATGTTCAATAAACGGAAATACTTTATTCAAGTCTAAAC-TGAAACAAA-----CTAAAATATGAT-----T-----ATGCTACACCGTT-ATAAGATTCAATTAACACTTGTAA---AGAC------GATATAACATTTAATACACTCTATGTT-TGATAATTCA------------TATG------------TGTTTTCT----------CTTTT--TATTCCTGATA-------TTGCCTTTATCC-TTTT-GTCACATTGTTGTATTA--T--TATAATATTTGTTTGTATTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgtgaaaaa
gi|7 : AAATAT---AAAATTGCACTCTCAAAACTGCGTTGCTCAAAACATTCGTTATTTG-TTGAAACAGGGAGA---CATG--CAAA-TG--TTG-CTTAT-------GCTGATAGAGTATGT--ATTTTGT--GTAACTC---A----CAA---GAA-ATAGAAGATGA------A------TTTCACG-CTGTCATGACATGTACCTTTTATAACGATCT--ACGTAACCAATATCTTGC-TGATATTATTAACTATA-----ACGATCACAACTACCA-TAATGTAT----ATGAATTCTACAGTTTGATGAGTACAACCAATTCTGACAA---GATAATCAAA-----CTGGCAAAGTTTGTATTT-GA-G---ATGTTTAATAAA-AGAACT-CTTTACC----TCCAATCTTAAAACAAAATGACTTAAAACATAAT-----tgtaatatgggccggtggcctcagttacttgaataaac
gi|8 : taaacgtgtaacagattgtgctctgcaaaattggcatgctgatgtccatgaatcaagaaaagctattcattataagcactttaaaacgcaactaaacgttgagcaataccttactttgaaaatccctttaAATTT---AAAACAGCACTCTCTAAA-----------------TTC-CTTTATG-TTGAAACTGGAAGA---CATA--ACAA-TC--TCC-CACAT-------AAACAAAGAATATGC--TTTTTTTTTGTAACTC---T----GGA---GA-------------------------------------------AAT-TGCG------GATGTTTTTCATGAAATAATTATCCTTCGAAA-ATGTGT------A-----ACGGT-A------CTAGTAATGGAT-TAAATTTCTTCTATAAAT-AATGAATATA--CAAAAC-AATAATT----GATAGAA-----ATCTGCAAATGTGTACTA-GA-A---CTGTTCAATAAACAGAA-----TTAT-----TCCAAGC-AGACCTAAA-----TTAAAATATGAT-----TATGCAA-----CACCG---------------CAACATTTGTAA---ATGCTGGGTTGATATAACATTTTAGACACTTGATGTT-TGTTAACTCAAAT---------TATAAT----------TCTTTTCT-----------TTTC--TATTCCTGCTA-------TTATCTTTATCG-TTGA-GGCACATTGTTGTTTTga
gi|9 : ATCAGTATCTTTC-AGA-ATTTC-G-----A-----ATGGT-A-----ACCA-TAATGGAT-TAAATTTATTCTATAAATTAATGAGTACA--CAAATC-GATAATTTGTCGATAAAA-----CTCTCCAAATGTGTACTA-GA-A---ATGTTCAATAAACGGAAATACTTTATTCAAGTCCAAAC-TGAAACAAA-----CTAAAATATGAT-----T-----ATGCTTCACCGTT-ATCAGATTAAATTAACACTTGTAA---AGAC------GATATAACATTTTAGACACTCTATGTT-TGATAATTCA------------TATG------------TGTTTTCT----------CTTTT--TATTCCTGATA-------TTGCATTTATCC-TTTT-GGCACATTGTTGTATTA--T--TATAATATTTGTGTGTATT
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): TACAAATATTGCTTATTTTGATAGATTATGTATTTTATGTAATTCACAAGAAAGAGAGGATGAATATTTCACGTTGTCAAGACAACGTTCTTTTACAGCGACCCACGTAACTAATATCTTGCTGA
Unaligned ( gi|21 ): ACAAATATTGCTTATTTTGATAGATTATGTATTTTATGTAATTCACAAGAAAGAGAGGATGAATATTTCACGTTGTCAAGACAACGTTCTTTTACAGCGACCCACGTAACTAATATCTTGCTGAT
Unaligned ( gi|26 ): TGTATTATGGGCCGGTGACCTGAATTACTTTAATAAACTTTTGTCACTGCCATTACAGTCATTG
Unaligned ( gi|27 ): TTTCACGCTGTCATGACATGTACCTTTTATAACGATCTACGTAACCAATATCTTGCTGAT
Unaligned ( gi|28 ): ATTTCACGCTGTCATGACATGTACCTTTTATAACGATCTACGTAACCAATATCTTGCTGA
Unaligned ( gi|29 ): ACTATTGTCATTGTCATTGATGTTTAAAGGAACAATGTGTTACAAACCAAA
Alignments
lowQualScore : 5555555555555555555555 11111 55555555555555555 111111 222222222222 222222222222 1111111111 1111111 88888888888888888888888888888888888888888888888888888888888 222 1 11 222
lowQualScore : 8888 1 1 2 555 4 0 1 2 2 444 33 1 2 333 666 9999999 0 1 33 33 88888888 444 2 8888888888888888888888 2 2 33 1 3 6 999999 88888 3 88888 3 33 2 44 3 99999 3 3 666 0 4 11111 66666666666666666 4 666 777777 3 222222222222 111111111111 4444444444 77 0000000 2 3 3 55 55 44444444444444444444444444444444444444444444444444444444444 111 5 88 1 111 1
lowQualScore : .... . . . ... . . . . . ... .. . . ... ... ....... . . .. .. ........ ... . ...................... . . .. . . . ...... ..... . ..... . .. . .. . ..... . . ... . . ..... ................. . ... ...... . ............ ............ .......... .. ....... . . . .. .. ........................................................... ... . .. . ... .
lowQualScore : 0000 3 7 8 888 4 2 0 4 1 111 22 9 5 666 222 3333333 1 0 99 99 00000000 777 7 5555555555555555555555 9 0 99 4 1 2 333333 33333 3 33333 3 88 6 66 3 11111 6 6 444 1 4 11111 44444444444444444 0 444 777777 3 999999999999 777777777777 6666666666 99 8888888 2 3 3 00 00 55555555555555555555555555555555555555555555555555555555555 555 5 00 0 555 0
consensus : TAAATTN---AAAATAGCACTCTCTAAACTGCGNTGTTCAGNNCATTCGCTTTTNG-TTGAAACCGGGAGA---CATA--CCAA-TA--TAC-CATAC-------GAACAAAGAATATGC--TTTTTAT--GTAACTC---T----GGA---GAA-ATA------GA------A------TTTCATG-TAATAATGAAATGTGCGTNTTATGATGATTT--GAGAAATCAGTATCTTTC-AGA-ATTTTTG-----A-----ATGGT-A-----ACCA-TAATGGAT-TAAATTTATTCTATAAATTAATGAGTACA--CAAAAC-GATAATTTGTTGATAAAA-----CTCTCCAAATGTGTACTA-GA-A---ATGTTCAATAAACGGAAATACTTTATTCAAGTCCAAAC-TGAAACAAA-----CTAAAATATGAT-----T-----A-----CACCGTT-ATAAGATTCAATTAACACTTGTAA---AGAC------GATATAACATTTTAGACACTCTATGTT-TGATAATTCA------------TATG------------TGTTTTCT----------CTTTT--TATTCCTGATA-------TTGCCTTTATCC-TTTT-GGCACATTGTTGTATTA--T--TATAATATTTGTGTGTATT-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTTTCATAAAATGATTGGTATTAATATGTTTCCTTCNGCTCGTTTTTAAAAANAA
Reference ( family-736 ) : TAAATTN---AAAATAGCACTCTCTAAACTGCGNTGTTCAGNNCATTCGCTTTTNG-TTGAAACCGGGAGA---CATA--CCAA-TA--TAC-CATAC-------GAACAAAGAATATGC--TTTTTAT--GTAACTC---T----GGA---GAA-ATA------GA------A------TTTCATG-TAATAATGAAATGTGCGTNTTATGATGATTT--GAGAAATCAGTATCTTTC-AGA-ATTTTTG-----A-----ATGGT-A-----ACCA-TAATGGAT-TAAATTTATTCTATAAATTAATGAGTACA--CAAAAC-GATAATTTGTTGATAAAA-----CTCTCCAAATGTGTACTA-GA-A---ATGTTCAATAAACGGAAATACTTTATTCAAGTCCAAAC-TGAAACAAA-----CTAAAATATGAT-----T-----A-----CACCGTT-ATAAGATTCAATTAACACTTGTAA---AGAC------GATATAACATTTTAGACACTCTATGTT-TGATAATTCA------------TATG------------TGTTTTCT----------CTTTT--TATTCCTGATA-------TTGCCTTTATCC-TTTT-GGCACATTGTTGTATTA--T--TATAATATTTGTGTGTATT-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTTTCATAAAATGATTGGTATTAATATGTTTCCTTCNGCTCGTTTTTAAAAANAA
gi|1 : TAAATTG---AAAATAGCACTCTCTAAACTACGATGTTCAGATCATTCACTTTTAG-TTGAAACCGGAAGA---CACA--CCAA-TA--TAC-AATAC-------GAACAAAGAATATGC--TTTTCAT--GTAACTC---T----GGA---GAA-ATA------GA------A------TTCCATG-TAATAATGAAATGTGCGTATTATGATGATTT--GAGAAATCAGTATCTTTC-AGA-ATTTTTG-----A-----ATGGT-A-----ACCA-TAATGGAT-TAAATTTATTCTATAAATTAATGAGTACA--CAAAAC-GATAATTTGTTGATAAAA-----CTCTCCAAATGTGTACTA-GA-A---ATGTTCAATAAACGGAAATACTTTATTCAAGTCCAAAC-TGAAACAAA-----CTAATACATGAT-----T-----A-----CACCGTT-GTAAGATTCAACTAACACTTGTAA---AGAC------GATATAACATTTTAGACAATCTATGTT-TGATAATTCA------------TATG------------TGTTTTCT----------TTTTT--TATTCCTGATA-------TTGTCTTTATCC-TTTT-GGCATATTATTGTATAA--T--TATAATATTTGGGTGTATT-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC--------AAAATGATTGGTATTAATATGTTTC--TCAGCTCG---TTAAAAACAA
gi|10 : ATTACGTTGTTCAATGCATTCATTAGTTG-TTGAAACTGGGAGA---CATT--CTAA-TG--TCC-CTTAT-------GAA-----GATAAGT--ATTTTAT--GTAATTCACAT----GTAATTGAAGAT-------GA------A------TTCTATG-TAGTCATGAATTTTACCTTCTACCAAGATAT--GCGTGAACAATATCTTAC-AAATATCATTA-----AAAGTTATAGT-A-----ATCA-TAATGTGTACGAATTT----TATAGATCAGTGGGGACC--CAGGAC-ATTAGTTAATTAAAAAAAAAAACCTTGTCAGATTTGT-TTATGA-A---ATGTTTGAAAAAC----ATACTATAcag
gi|11 : ACCGTTTATAAGATTCAAGAAACACTTGTCACCTGGTT------GATATAACATTTTAGATACTCGATGTT-TGTTAATTCAAATTTTGTTTTTTGTGGGGGATTTAATTTGTTTTGT----------TTTTTC-TATTCTTAATA-------TTGTCTTTATCC-TTTTTGGTACATTGTTGTATTA--CTATATAATATTTGTGTATATT-ccatcttctgatagaataagaattagaataataa
gi|12 : -----T-----A-----CATCGTC-ATAAGATTAAATTAAAACTTGTAA---AGAC------GATATAACATTT--------CTATGTT-TGATAATTCA------------TATG------------TGTTTTCT----------CTTTT--TATTCCTGATA-------TTGCCTTTATCC-TTTT-GGCACATTGTTGTATTA--T--TATAATATTTGTGTGTATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTCATAAAATGATTGA---TAAT-TGTTTCCTTTTGCTTGTTTTTAAAAAGAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatacagctggatttttagcttatactgtcattctcaatggtatggaacaaagcattaataagccaaa
gi|13 : gcAAATTT---AAAACAGCACTCTCTAAA-----------------TTC-CTTTATG-TTGAAACTGGAAGA---CATA--ACAA-TC--TCC-CACAT-------AAACAAAGAATATGCTTTTTTTTT--GTAACTC---T----GGA---GAA-ATatcag
gi|14 : taaatgtttgactgttccctaaaaaaactggcacgcagatttagatcaatggagtgaaactacacataatcagtattttaaaactattctagctgtagaaaggtatctcactttgagaatcccaacgGTTCAGCTCATTCACTTTTAG-TTGAAACCGGAAGA---CATT--CCAA-TA--TAC-CATAC-------GAACAAAGAATATGC--TTTTTAT--GAAACCC---T----GGA---GAA-ATATAGGACGA------A------TTTCATG-TAATAATGAAATGTGCGTATTATGATGATTT--GAGAAATCAGTATCTTTC-AGA-ATTTTTG-----A-----ATGGT-A-----ACC--TAATGGAT-TAAATTTATTCTATAAATTAATGAGTACA--CAAAAC-GATAATTTGTTGATtgcggatgtttttcat
gi|15 : cATTA---AGTATAGCTCTTACGCGATTGCGTGTTTCTGCTCAT-CGATTTGAGATTGATACTGGGAGATGGCACAAGCCAAATA--TA---ATACCTAAAGAGAACA--GAAAATGT--TCTTTAT--GT--CTC---TTATTGGA----AG-AT-------GA------A------TATCCTT-TATTATTGAAATGTGTTTTATATAATGATCT--CAGAAA-CA-TATATTTC-AAA-
gi|16 : AAATAT---AAAATTGCACTCTCAAAACTGCGTTGTTCAAACCATTCGTTATTTG-TTGAAACAGGGAGA---CATA--CAAA--AGTTGCTTATGC-------TGATAGA-------------TTAT---TAA------------GA---CGA-AT-----------------------TTCACGCTGACA-TGACATGTACCTTTTATAAAGATCT--ACGTAACCAATATCTTccatacatttagtaaaa
gi|17 : aaacattgagcaataccttactttgaaaatccctttaCTC---T----GGA---GAA-ATA------GAGGACGAA------TTTCATG-TAATAATGATATGTGCGTTTGATGATAATTT--ACGAAATCAGTATCTATC-CG--ATTTTTT-----A-----ATCGA-A-----ACCA-TAATGCA-------TCATTCAATAAATTAATAAGTACA--CAAAAC-GATGACTTGTTGATAACA------TCTCCTAATGTATGATA-GATAAGTATGTTCAACAgct
gi|18 : ACTCTCAAAACTGCGTTGTTCAAAACATTCGTTATTTG-TTGAAACAGGGAGA---CATA--CAAA-TG--TTG-CTTAT-------GCTGATAGAATATGT--ATTTTGT--GTAACTC---A----CAA---GAA-ATAGAAGATGA------A------TTTCACG-CTGTCATAACATGTACCTTTTATAACGATCT--ACGTAACTAATATCTT
gi|19 : GATTCAATTAGCACTTGTAA---ATGC------CA------AGTTTAGATATTCGATGTTGTCGTTTTTGT------------TATG------------TATTTTGT----------CT------ATCCTAAATA-------GTGTCTTTATTT-TTTT-GGCACATTGATGTATTACTT--TATAATATTTTTGTgct
gi|2 : TAAATTG---AAAATAACACTCTCTAAACTACGATGTTCAGCTCATTCACCTTTAG-TTGAAACCGGAACA---CATA--C----------------------------AAAGACTATGC--TTTTTAT--GTAACTC---T----GGA---GAA-ATA------GAGGACGAA------TTTCATG-TAATAATGAAATGTGCGTATTATGATGATTT--GAGAAATCAGTATTTATC-TGA-TTTTTTG-----A-----ATGGT-A-----ATCA-TAATGGAT-TAAATTTATTCTATAAATTAATGATTACA--CAAAAC-GATAATTTGTTGATAAAA-----CTCTCCAAATGTGTACTA-GA-A---ATGTTCAATAAACGGAAATATTTTATTCAAGCCCAAAC-TGAAAGAAA-----CTAAAATATGATTATGCT-----A-----CACCGTT-GTAAGATTCAAATAACACTTGTAA---ATACT-----GATATAACATTTTAGACACTCTATGTT-TGATAATTCA------------TATG------------TGTTTTCC----------CTTTT--TATTCCTGATA-------TTATCTTTATCC-TTTT-AGCGCATTGTTGTACTA--T--TATACTAGTTGTGTGTATT-acacatgtatcatgtgccggtaccttagattgattgaataaac
gi|22 : tATGTT-TATTAATTCA------------TACG------------TTTTTTTTGTGTGTGTTGTTTTTCCTCTTCCGGATAATATGTATTGTCTTTGTCC-TTTT-GGCACATTGTTGTATTA--T--TATA----CTGTATATATT-nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgccaaa
gi|23 : ttcAAATTTGAAAAAATGTC-CTCTCTTATTTCCGATGCTCAAGTCATTCGCTTTTTA-TTGAAACTGGCAGA---CATA--ta
gi|24 : CACTCTCAAAACTGCGTTGTTCAAAACATTCGTTATTTG-TTGAAACAGGGAGA---CATA--TAAA-TG--Tataacaattgacaacgca
gi|25 : ACTCTCAGAACTGCGTTGTTCAAAACATTCATTATTTG-TTGAAACAGGGAGA---CATA--CAAA-TG--Ttgcttatgctgatagagtatgtat
gi|3 : tGCCCTCTCTAAACTACAATGTTCAGCGCATTCACTTTTAG-TTGAAACCGGAAGA---CACA--CCAA-TA--TAA-CATAC-------GAACAAAGAATATAC--TTTTTAT--GTAACTC---T----GGA---GAA-ATAAGGAC-GA------A------TTTCATG-TAATAATGAAATGTGCGTATTATGATGATTT--GAAAAATCAGTATCTTTC-AGA-ATTTTTT-----A-----ATGGT-A-----TCCT-TAATGGAT-AAAATTTATTCTATAAATAAATGAGTACA--CAAAAC-GATAATTTATTTATAAAA-----CTCTCCAAATGTGTACTA-GA-A---ATTTTCAATAAACGAAAATACTTTATTCAAGTTCAAAC-TGAAACAAA-----CTAAAATATGATTATGCT-----A-----CACCGTT-ATAAGATTCAATTAACACTTGTAA---ATACT-----GATGAAACATTTTAGACACTTT-TTTT-TTATAATTCA------------TATG------------TGTTTTCT----------CTTTC--TATTCCTGATA-------TTGCCTTTATCCTTTTT-GGCACATTGTTGTATTA--T--TATAATATTTGTGTGTATT-tactta
gi|4 : AAATAGCACTCTCTAAACTACGATGTCCAACTCATTCATTTTTAG-TTGAAACCAGAAGA---CACA--CCAA-TA--TAC-CATAC-------GAACAAAGAATATGC--CTTTTAT--GTTACTC---T----GGA---GAA-ATA------GA------AGACGAATTTCATG-TAATAATGAAATGTGCGTATTATGATGATTT--GAGAAATCAGTATCTTTC-AGA-ATTTTTG-----A-----ATGGT-A-----ACCA-TAATGGAT-TAAATTTATTCTATAAATTAATGAGTACA--CAAAAC-GATAATTT-TTGACAAAA-----CTCTCC--------------A-A---ATGTTCAATAAACGGAAATACTTTATTCAAGTCCAAAC-TGAAACAAA-----TTTAAATATGAC-----TATGCAA-----CACCGTT-ATAATATTCAATTAACACATGTTA---AGAC------GATATAACATTTTAGACACTCTATGTT-TGATAATTTG------------TATA------------TGTTTTCT----------CTTTT--TATTCCTGATA-------TTGCCTTTATCC-TTTT-GGCACACTGTTGTATTA--T--TATAATATTTGTGTGTATT-nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgtca
gi|5 : TAAATTG---AAAATAGCACTCTCTAAACTACGATGTTCAGCTCATTCACTTCTAG-TTGAAACCGGAAGA---CACA--ACAA-TA--TAC-CATAC-------GAACAAAGAACATGC--TTTTCAT--CTAACTC---T----GGA---GAA-ATA------GAGGACGAA------TTTCATG-TAATAATGAAATGTACGTATTACGATGATTT--GAGAAATCAGTATCTTTT-AGA-ATTTTTG-----A-----ATGGT-T-----ACCA-TAATGGAT-TAAATTTATTTTATAAATTAACGAGAACA--CAAAAC-GATAATTTGTTGATAAAA-----CTCTCCAAATGTGTACTA-GA-A---ATGTTCAATAAACGGAAATACTTTACTTAAGTCCAAAC-TGTAACAAA-----CTAAAATATGATTATGCT-----A-----CAGCGTT-ATAAGGCTCAATTAACATTTGTAA---GGAC------GATATAACATTTTAGACACTCTATATT-TGATAAGTCA------------TATA------------TGTTTTC-----------CTTTT--GGC-----ACA-------TTG---------------------TTGT---ATTA--T--TATAACATTTGTGTGTATT-nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgtcata
gi|6 : TAAATTG---AAAATAGCACCCTCTAAACTACGGTGTTCAGCTCATTCACTTTTAG-TTGAAACCGAAAGT---AACA--CCAA-TA--TAC-CATAC-------GAACAAAGAATATGC--TTTTTAT--GTAACT---------GGA---GAA-ATA------GAGGACGAA------TTTCATG-TAATAATGAATTGTGCGTATTATGATGCTTT--GAGAAATCAGTATCTTTC-AGA-ATTTTTG-----A-----ATGGT-A-----ATCA-TTATGGAT-TAAATTTATTCTATAAAT--------ACA--CAAAAC-GATGATTTGTTGATAACA-----CTCTCCAAATGTGTATTA-TA-A---ATGTTCAATAAACGGAAATACTTTATTCAAGTCTAAAC-TGAAACAAA-----CTAAAATATGAT-----T-----ATGCTACACCGTT-ATAAGATTCAATTAACACTTGTAA---AGAC------GATATAACATTTAATACACTCTATGTT-TGATAATTCA------------TATG------------TGTTTTCT----------CTTTT--TATTCCTGATA-------TTGCCTTTATCC-TTTT-GTCACATTGTTGTATTA--T--TATAATATTTGTTTGTATT-nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgtgaaaaa
gi|7 : AAATAT---AAAATTGCACTCTCAAAACTGCGTTGCTCAAAACATTCGTTATTTG-TTGAAACAGGGAGA---CATG--CAAA-TG--TTG-CTTAT-------GCTGATAGAGTATGT--ATTTTGT--GTAACTC---A----CAA---GAA-ATAGAAGATGA------A------TTTCACG-CTGTCATGACATGTACCTTTTATAACGATCT--ACGTAACCAATATCTTGC-TGATATTATTAACTATA-----ACGATCACAACTACCA-TAATGTAT----ATGAATTCTACAGTTTGATGAGTACAACCAATTCTGACAA---GATAATCAAA-----CTGGCAAAGTTTGTATTT-GA-G---ATGTTTAATAAA-AGAACT-CTTTACC----TCCAATCTTAAAACAAAATGACTTAAAACATAAT-----tgtaatatgggccggtggcctcagttacttgaataaac
gi|8 : taaacgtgtaacagattgtgctctgcaaaattggcatgctgatgtccatgaatcaagaaaagctattcattataagcactttaaaacgcaactaaacgttgagcaataccttactttgaaaatccctttaAATTT---AAAACAGCACTCTCTAAA-----------------TTC-CTTTATG-TTGAAACTGGAAGA---CATA--ACAA-TC--TCC-CACAT-------AAACAAAGAATATGC--TTTTTTTTTGTAACTC---T----GGA---GA-------------------------------------------AAT-TGCG------GATGTTTTTCATGAAATAATTATCCTTCGAAA-ATGTGT------A-----ACGGT-A------CTAGTAATGGAT-TAAATTTCTTCTATAAAT-AATGAATATA--CAAAAC-AATAATT----GATAGAA-----ATCTGCAAATGTGTACTA-GA-A---CTGTTCAATAAACAGAA-----TTAT-----TCCAAGC-AGACCTAAA-----TTAAAATATGAT-----TATGCAA-----CACCG---------------CAACATTTGTAA---ATGCTGGGTTGATATAACATTTTAGACACTTGATGTT-TGTTAACTCAAAT---------TATAAT----------TCTTTTCT-----------TTTC--TATTCCTGCTA-------TTATCTTTATCG-TTGA-GGCACATTGTTGTTTTga
gi|9 : ATCAGTATCTTTC-AGA-ATTTC-G-----A-----ATGGT-A-----ACCA-TAATGGAT-TAAATTTATTCTATAAATTAATGAGTACA--CAAATC-GATAATTTGTCGATAAAA-----CTCTCCAAATGTGTACTA-GA-A---ATGTTCAATAAACGGAAATACTTTATTCAAGTCCAAAC-TGAAACAAA-----CTAAAATATGAT-----T-----ATGCTTCACCGTT-ATCAGATTAAATTAACACTTGTAA---AGAC------GATATAACATTTTAGACACTCTATGTT-TGATAATTCA------------TATG------------TGTTTTCT----------CTTTT--TATTCCTGATA-------TTGCATTTATCC-TTTT-GGCACATTGTTGTATTA--T--TATAATATTTGTGTGTATT-
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): TACAAATATTGCTTATTTTGATAGATTATGTATTTTATGTAATTCACAAGAAAGAGAGGATGAATATTTCACGTTGTCAAGACAACGTTCTTTTACAGCGACCCACGTAACTAATATCTTGCTGA
Unaligned ( gi|21 ): ACAAATATTGCTTATTTTGATAGATTATGTATTTTATGTAATTCACAAGAAAGAGAGGATGAATATTTCACGTTGTCAAGACAACGTTCTTTTACAGCGACCCACGTAACTAATATCTTGCTGAT
Unaligned ( gi|26 ): TGTATTATGGGCCGGTGACCTGAATTACTTTAATAAACTTTTGTCACTGCCATTACAGTCATTG
Unaligned ( gi|27 ): TTTCACGCTGTCATGACATGTACCTTTTATAACGATCTACGTAACCAATATCTTGCTGAT
Unaligned ( gi|28 ): ATTTCACGCTGTCATGACATGTACCTTTTATAACGATCTACGTAACCAATATCTTGCTGA
Unaligned ( gi|29 ): ACTATTGTCATTGTCATTGATGTTTAAAGGAACAATGTGTTACAAACCAAA
Alignments
lowQualScore : 5555555555555555555555 11111 55555555555555555 111111 222222222222 222222222222 1111111111 1111111 88888888888888888888888888888888888888888888888888888888888 222 1 11 222
lowQualScore : 8888 1 1 2 555 4 0 1 2 2 444 33 1 2 333 666 9999999 0 1 33 33 88888888 444 2 8888888888888888888888 2 2 33 1 3 6 999999 88888 3 88888 3 33 2 44 3 99999 3 3 666 0 4 11111 66666666666666666 4 666 777777 3 222222222222 111111111111 4444444444 77 0000000 2 3 3 55 55 44444444444444444444444444444444444444444444444444444444444 111 5 88 1 111 1
lowQualScore : .... . . . ... . . . . . ... .. . . ... ... ....... . . .. .. ........ ... . ...................... . . .. . . . ...... ..... . ..... . .. . .. . ..... . . ... . . ..... ................. . ... ...... . ............ ............ .......... .. ....... . . . .. .. ........................................................... ... . .. . ... .
lowQualScore : 0000 3 7 8 888 4 2 0 4 1 111 22 9 5 666 222 3333333 1 0 99 99 00000000 777 7 5555555555555555555555 9 0 99 4 1 2 333333 33333 3 33333 3 88 6 66 3 11111 6 6 444 1 4 11111 44444444444444444 0 444 777777 3 999999999999 777777777777 6666666666 99 8888888 2 3 3 00 00 55555555555555555555555555555555555555555555555555555555555 555 5 00 0 555 0
consensus : TAAATTN---AAAATAGCACTCTCTAAACTGCGNTGTTCAGNNCATTCGCTTTTNG-TTGAAACCGGGAGA---CATA--CCAA-TA--TAC-CATAC-------GAACAAAGAATATGC--TTTTTAT--GTAACTC---T----GGA---GAA-ATA------GA------A------TTTCATG-TAATAATGAAATGTGCGTNTTATGATGATTT--GAGAAATCAGTATCTTTC-AGA-ATTTTTG-----A-----ATGGT-A-----ACCA-TAATGGAT-TAAATTTATTCTATAAATTAATGAGTACA--CAAAAC-GATAATTTGTTGATAAAA-----CTCTCCAAATGTGTACTA-GA-A---ATGTTCAATAAACGGAAATACTTTATTCAAGTCCAAAC-TGAAACAAA-----CTAAAATATGAT-----T-----A-----CACCGTT-ATAAGATTCAATTAACACTTGTAA---AGAC------GATATAACATTTTAGACACTCTATGTT-TGATAATTCA------------TATG------------TGTTTTCT----------CTTTT--TATTCCTGATA-------TTGCCTTTATCC-TTTT-GGCACATTGTTGTATTA--T--TATAATATTTGTGTGTATT-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTTTCATAAAATGATTGGTATTAATATGTTTCCTTCNGCTCGTTTTTAAAAANAA
Reference ( family-736 ) : TAAATTN---AAAATAGCACTCTCTAAACTGCGNTGTTCAGNNCATTCGCTTTTNG-TTGAAACCGGGAGA---CATA--CCAA-TA--TAC-CATAC-------GAACAAAGAATATGC--TTTTTAT--GTAACTC---T----GGA---GAA-ATA------GA------A------TTTCATG-TAATAATGAAATGTGCGTNTTATGATGATTT--GAGAAATCAGTATCTTTC-AGA-ATTTTTG-----A-----ATGGT-A-----ACCA-TAATGGAT-TAAATTTATTCTATAAATTAATGAGTACA--CAAAAC-GATAATTTGTTGATAAAA-----CTCTCCAAATGTGTACTA-GA-A---ATGTTCAATAAACGGAAATACTTTATTCAAGTCCAAAC-TGAAACAAA-----CTAAAATATGAT-----T-----A-----CACCGTT-ATAAGATTCAATTAACACTTGTAA---AGAC------GATATAACATTTTAGACACTCTATGTT-TGATAATTCA------------TATG------------TGTTTTCT----------CTTTT--TATTCCTGATA-------TTGCCTTTATCC-TTTT-GGCACATTGTTGTATTA--T--TATAATATTTGTGTGTATT-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTTTCATAAAATGATTGGTATTAATATGTTTCCTTCNGCTCGTTTTTAAAAANAA
gi|1 : TAAATTG---AAAATAGCACTCTCTAAACTACGATGTTCAGATCATTCACTTTTAG-TTGAAACCGGAAGA---CACA--CCAA-TA--TAC-AATAC-------GAACAAAGAATATGC--TTTTCAT--GTAACTC---T----GGA---GAA-ATA------GA------A------TTCCATG-TAATAATGAAATGTGCGTATTATGATGATTT--GAGAAATCAGTATCTTTC-AGA-ATTTTTG-----A-----ATGGT-A-----ACCA-TAATGGAT-TAAATTTATTCTATAAATTAATGAGTACA--CAAAAC-GATAATTTGTTGATAAAA-----CTCTCCAAATGTGTACTA-GA-A---ATGTTCAATAAACGGAAATACTTTATTCAAGTCCAAAC-TGAAACAAA-----CTAATACATGAT-----T-----A-----CACCGTT-GTAAGATTCAACTAACACTTGTAA---AGAC------GATATAACATTTTAGACAATCTATGTT-TGATAATTCA------------TATG------------TGTTTTCT----------TTTTT--TATTCCTGATA-------TTGTCTTTATCC-TTTT-GGCATATTATTGTATAA--T--TATAATATTTGGGTGTATT-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC--------AAAATGATTGGTATTAATATGTTTC--TCAGCTCG---TTAAAAACAA
gi|10 : ATTACGTTGTTCAATGCATTCATTAGTTG-TTGAAACTGGGAGA---CATT--CTAA-TG--TCC-CTTAT-------GAA-----GATAAGT--ATTTTAT--GTAATTCACAT----GTAATTGAAGAT-------GA------A------TTCTATG-TAGTCATGAATTTTACCTTCTACCAAGATAT--GCGTGAACAATATCTTAC-AAATATCATTA-----AAAGTTATAGT-A-----ATCA-TAATGTGTACGAATTT----TATAGATCAGTGGGGACC--CAGGAC-ATTAGTTAATTAAAAAAAAAAACCTTGTCAGATTTGT-TTATGA-A---ATGTTTGAAAAAC----ATACTATAcag
gi|11 : ACCGTTTATAAGATTCAAGAAACACTTGTCACCTGGTT------GATATAACATTTTAGATACTCGATGTT-TGTTAATTCAAATTTTGTTTTTTGTGGGGGATTTAATTTGTTTTGT----------TTTTTC-TATTCTTAATA-------TTGTCTTTATCC-TTTTTGGTACATTGTTGTATTA--CTATATAATATTTGTGTATATT-ccatcttctgatagaataagaattagaataataa
gi|12 : -----T-----A-----CATCGTC-ATAAGATTAAATTAAAACTTGTAA---AGAC------GATATAACATTT--------CTATGTT-TGATAATTCA------------TATG------------TGTTTTCT----------CTTTT--TATTCCTGATA-------TTGCCTTTATCC-TTTT-GGCACATTGTTGTATTA--T--TATAATATTTGTGTGTATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTCATAAAATGATTGA---TAAT-TGTTTCCTTTTGCTTGTTTTTAAAAAGAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatacagctggatttttagcttatactgtcattctcaatggtatggaacaaagcattaataagccaaa
gi|13 : gcAAATTT---AAAACAGCACTCTCTAAA-----------------TTC-CTTTATG-TTGAAACTGGAAGA---CATA--ACAA-TC--TCC-CACAT-------AAACAAAGAATATGCTTTTTTTTT--GTAACTC---T----GGA---GAA-ATatcag
gi|14 : taaatgtttgactgttccctaaaaaaactggcacgcagatttagatcaatggagtgaaactacacataatcagtattttaaaactattctagctgtagaaaggtatctcactttgagaatcccaacgGTTCAGCTCATTCACTTTTAG-TTGAAACCGGAAGA---CATT--CCAA-TA--TAC-CATAC-------GAACAAAGAATATGC--TTTTTAT--GAAACCC---T----GGA---GAA-ATATAGGACGA------A------TTTCATG-TAATAATGAAATGTGCGTATTATGATGATTT--GAGAAATCAGTATCTTTC-AGA-ATTTTTG-----A-----ATGGT-A-----ACC--TAATGGAT-TAAATTTATTCTATAAATTAATGAGTACA--CAAAAC-GATAATTTGTTGATtgcggatgtttttcat
gi|15 : cATTA---AGTATAGCTCTTACGCGATTGCGTGTTTCTGCTCAT-CGATTTGAGATTGATACTGGGAGATGGCACAAGCCAAATA--TA---ATACCTAAAGAGAACA--GAAAATGT--TCTTTAT--GT--CTC---TTATTGGA----AG-AT-------GA------A------TATCCTT-TATTATTGAAATGTGTTTTATATAATGATCT--CAGAAA-CA-TATATTTC-AAA-
gi|16 : AAATAT---AAAATTGCACTCTCAAAACTGCGTTGTTCAAACCATTCGTTATTTG-TTGAAACAGGGAGA---CATA--CAAA--AGTTGCTTATGC-------TGATAGA-------------TTAT---TAA------------GA---CGA-AT-----------------------TTCACGCTGACA-TGACATGTACCTTTTATAAAGATCT--ACGTAACCAATATCTTccatacatttagtaaaa
gi|17 : aaacattgagcaataccttactttgaaaatccctttaCTC---T----GGA---GAA-ATA------GAGGACGAA------TTTCATG-TAATAATGATATGTGCGTTTGATGATAATTT--ACGAAATCAGTATCTATC-CG--ATTTTTT-----A-----ATCGA-A-----ACCA-TAATGCA-------TCATTCAATAAATTAATAAGTACA--CAAAAC-GATGACTTGTTGATAACA------TCTCCTAATGTATGATA-GATAAGTATGTTCAACAgct
gi|18 : ACTCTCAAAACTGCGTTGTTCAAAACATTCGTTATTTG-TTGAAACAGGGAGA---CATA--CAAA-TG--TTG-CTTAT-------GCTGATAGAATATGT--ATTTTGT--GTAACTC---A----CAA---GAA-ATAGAAGATGA------A------TTTCACG-CTGTCATAACATGTACCTTTTATAACGATCT--ACGTAACTAATATCTT
gi|19 : GATTCAATTAGCACTTGTAA---ATGC------CA------AGTTTAGATATTCGATGTTGTCGTTTTTGT------------TATG------------TATTTTGT----------CT------ATCCTAAATA-------GTGTCTTTATTT-TTTT-GGCACATTGATGTATTACTT--TATAATATTTTTGTgct
gi|2 : TAAATTG---AAAATAACACTCTCTAAACTACGATGTTCAGCTCATTCACCTTTAG-TTGAAACCGGAACA---CATA--C----------------------------AAAGACTATGC--TTTTTAT--GTAACTC---T----GGA---GAA-ATA------GAGGACGAA------TTTCATG-TAATAATGAAATGTGCGTATTATGATGATTT--GAGAAATCAGTATTTATC-TGA-TTTTTTG-----A-----ATGGT-A-----ATCA-TAATGGAT-TAAATTTATTCTATAAATTAATGATTACA--CAAAAC-GATAATTTGTTGATAAAA-----CTCTCCAAATGTGTACTA-GA-A---ATGTTCAATAAACGGAAATATTTTATTCAAGCCCAAAC-TGAAAGAAA-----CTAAAATATGATTATGCT-----A-----CACCGTT-GTAAGATTCAAATAACACTTGTAA---ATACT-----GATATAACATTTTAGACACTCTATGTT-TGATAATTCA------------TATG------------TGTTTTCC----------CTTTT--TATTCCTGATA-------TTATCTTTATCC-TTTT-AGCGCATTGTTGTACTA--T--TATACTAGTTGTGTGTATT-acacatgtatcatgtgccggtaccttagattgattgaataaac
gi|22 : tATGTT-TATTAATTCA------------TACG------------TTTTTTTTGTGTGTGTTGTTTTTCCTCTTCCGGATAATATGTATTGTCTTTGTCC-TTTT-GGCACATTGTTGTATTA--T--TATA----CTGTATATATT-nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgccaaa
gi|23 : ttcAAATTTGAAAAAATGTC-CTCTCTTATTTCCGATGCTCAAGTCATTCGCTTTTTA-TTGAAACTGGCAGA---CATA--ta
gi|24 : CACTCTCAAAACTGCGTTGTTCAAAACATTCGTTATTTG-TTGAAACAGGGAGA---CATA--TAAA-TG--Tataacaattgacaacgca
gi|25 : ACTCTCAGAACTGCGTTGTTCAAAACATTCATTATTTG-TTGAAACAGGGAGA---CATA--CAAA-TG--Ttgcttatgctgatagagtatgtat
gi|3 : tGCCCTCTCTAAACTACAATGTTCAGCGCATTCACTTTTAG-TTGAAACCGGAAGA---CACA--CCAA-TA--TAA-CATAC-------GAACAAAGAATATAC--TTTTTAT--GTAACTC---T----GGA---GAA-ATAAGGAC-GA------A------TTTCATG-TAATAATGAAATGTGCGTATTATGATGATTT--GAAAAATCAGTATCTTTC-AGA-ATTTTTT-----A-----ATGGT-A-----TCCT-TAATGGAT-AAAATTTATTCTATAAATAAATGAGTACA--CAAAAC-GATAATTTATTTATAAAA-----CTCTCCAAATGTGTACTA-GA-A---ATTTTCAATAAACGAAAATACTTTATTCAAGTTCAAAC-TGAAACAAA-----CTAAAATATGATTATGCT-----A-----CACCGTT-ATAAGATTCAATTAACACTTGTAA---ATACT-----GATGAAACATTTTAGACACTTT-TTTT-TTATAATTCA------------TATG------------TGTTTTCT----------CTTTC--TATTCCTGATA-------TTGCCTTTATCCTTTTT-GGCACATTGTTGTATTA--T--TATAATATTTGTGTGTATT-tactta
gi|4 : AAATAGCACTCTCTAAACTACGATGTCCAACTCATTCATTTTTAG-TTGAAACCAGAAGA---CACA--CCAA-TA--TAC-CATAC-------GAACAAAGAATATGC--CTTTTAT--GTTACTC---T----GGA---GAA-ATA------GA------AGACGAATTTCATG-TAATAATGAAATGTGCGTATTATGATGATTT--GAGAAATCAGTATCTTTC-AGA-ATTTTTG-----A-----ATGGT-A-----ACCA-TAATGGAT-TAAATTTATTCTATAAATTAATGAGTACA--CAAAAC-GATAATTT-TTGACAAAA-----CTCTCC--------------A-A---ATGTTCAATAAACGGAAATACTTTATTCAAGTCCAAAC-TGAAACAAA-----TTTAAATATGAC-----TATGCAA-----CACCGTT-ATAATATTCAATTAACACATGTTA---AGAC------GATATAACATTTTAGACACTCTATGTT-TGATAATTTG------------TATA------------TGTTTTCT----------CTTTT--TATTCCTGATA-------TTGCCTTTATCC-TTTT-GGCACACTGTTGTATTA--T--TATAATATTTGTGTGTATT-nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgtca
gi|5 : TAAATTG---AAAATAGCACTCTCTAAACTACGATGTTCAGCTCATTCACTTCTAG-TTGAAACCGGAAGA---CACA--ACAA-TA--TAC-CATAC-------GAACAAAGAACATGC--TTTTCAT--CTAACTC---T----GGA---GAA-ATA------GAGGACGAA------TTTCATG-TAATAATGAAATGTACGTATTACGATGATTT--GAGAAATCAGTATCTTTT-AGA-ATTTTTG-----A-----ATGGT-T-----ACCA-TAATGGAT-TAAATTTATTTTATAAATTAACGAGAACA--CAAAAC-GATAATTTGTTGATAAAA-----CTCTCCAAATGTGTACTA-GA-A---ATGTTCAATAAACGGAAATACTTTACTTAAGTCCAAAC-TGTAACAAA-----CTAAAATATGATTATGCT-----A-----CAGCGTT-ATAAGGCTCAATTAACATTTGTAA---GGAC------GATATAACATTTTAGACACTCTATATT-TGATAAGTCA------------TATA------------TGTTTTC-----------CTTTT--GGC-----ACA-------TTG---------------------TTGT---ATTA--T--TATAACATTTGTGTGTATT-nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgtcata
gi|6 : TAAATTG---AAAATAGCACCCTCTAAACTACGGTGTTCAGCTCATTCACTTTTAG-TTGAAACCGAAAGT---AACA--CCAA-TA--TAC-CATAC-------GAACAAAGAATATGC--TTTTTAT--GTAACT---------GGA---GAA-ATA------GAGGACGAA------TTTCATG-TAATAATGAATTGTGCGTATTATGATGCTTT--GAGAAATCAGTATCTTTC-AGA-ATTTTTG-----A-----ATGGT-A-----ATCA-TTATGGAT-TAAATTTATTCTATAAAT--------ACA--CAAAAC-GATGATTTGTTGATAACA-----CTCTCCAAATGTGTATTA-TA-A---ATGTTCAATAAACGGAAATACTTTATTCAAGTCTAAAC-TGAAACAAA-----CTAAAATATGAT-----T-----ATGCTACACCGTT-ATAAGATTCAATTAACACTTGTAA---AGAC------GATATAACATTTAATACACTCTATGTT-TGATAATTCA------------TATG------------TGTTTTCT----------CTTTT--TATTCCTGATA-------TTGCCTTTATCC-TTTT-GTCACATTGTTGTATTA--T--TATAATATTTGTTTGTATT-nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgtgaaaaa
gi|7 : AAATAT---AAAATTGCACTCTCAAAACTGCGTTGCTCAAAACATTCGTTATTTG-TTGAAACAGGGAGA---CATG--CAAA-TG--TTG-CTTAT-------GCTGATAGAGTATGT--ATTTTGT--GTAACTC---A----CAA---GAA-ATAGAAGATGA------A------TTTCACG-CTGTCATGACATGTACCTTTTATAACGATCT--ACGTAACCAATATCTTGC-TGATATTATTAACTATA-----ACGATCACAACTACCA-TAATGTAT----ATGAATTCTACAGTTTGATGAGTACAACCAATTCTGACAA---GATAATCAAA-----CTGGCAAAGTTTGTATTT-GA-G---ATGTTTAATAAA-AGAACT-CTTTACC----TCCAATCTTAAAACAAAATGACTTAAAACATAAT-----tgtaatatgggccggtggcctcagttacttgaataaac
gi|8 : taaacgtgtaacagattgtgctctgcaaaattggcatgctgatgtccatgaatcaagaaaagctattcattataagcactttaaaacgcaactaaacgttgagcaataccttactttgaaaatccctttaAATTT---AAAACAGCACTCTCTAAA-----------------TTC-CTTTATG-TTGAAACTGGAAGA---CATA--ACAA-TC--TCC-CACAT-------AAACAAAGAATATGC--TTTTTTTTTGTAACTC---T----GGA---GA-------------------------------------------AAT-TGCG------GATGTTTTTCATGAAATAATTATCCTTCGAAA-ATGTGT------A-----ACGGT-A------CTAGTAATGGAT-TAAATTTCTTCTATAAAT-AATGAATATA--CAAAAC-AATAATT----GATAGAA-----ATCTGCAAATGTGTACTA-GA-A---CTGTTCAATAAACAGAA-----TTAT-----TCCAAGC-AGACCTAAA-----TTAAAATATGAT-----TATGCAA-----CACCG---------------CAACATTTGTAA---ATGCTGGGTTGATATAACATTTTAGACACTTGATGTT-TGTTAACTCAAAT---------TATAAT----------TCTTTTCT-----------TTTC--TATTCCTGCTA-------TTATCTTTATCG-TTGA-GGCACATTGTTGTTTTga
gi|9 : ATCAGTATCTTTC-AGA-ATTTC-G-----A-----ATGGT-A-----ACCA-TAATGGAT-TAAATTTATTCTATAAATTAATGAGTACA--CAAATC-GATAATTTGTCGATAAAA-----CTCTCCAAATGTGTACTA-GA-A---ATGTTCAATAAACGGAAATACTTTATTCAAGTCCAAAC-TGAAACAAA-----CTAAAATATGAT-----T-----ATGCTTCACCGTT-ATCAGATTAAATTAACACTTGTAA---AGAC------GATATAACATTTTAGACACTCTATGTT-TGATAATTCA------------TATG------------TGTTTTCT----------CTTTT--TATTCCTGATA-------TTGCATTTATCC-TTTT-GGCACATTGTTGTATTA--T--TATAATATTTGTGTGTATT-
blockSeqs : TGAA T A T ATG A T A T TGG AG T A AGT GCT CTAAAGA A TT TT TTATT ATT G ATAGGACGAA C T TC C G T AACTAT AAGTT C CAACT G AC C AC T AAAAC T T AGT T ATGAC TATGCTA T CCT TGGGTT G AATTTTGTTTTT GGGGATTTAATT GTGTGTGTTG CC ATATGTA T T T CT TA NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTCAT . . CT T TTT G
blockSeqs : T G G T GCT A T . T . . C . G CC . A . . ACAT . . AGAGGACGAA . A . A . T A . . . . T T . . . . . . . . TATGCTA . . T . AAT AT . C . C . . . .
blockSeqs : A A G T GCT G A . C . . C . C CC . G . . T . . AGAAGATGAA . T . A . . G . . . . T T . . . . . . . . TATGCAA . . T . . . . . . T . . . .
blockSeqs : T A G T AAC G A . T . . C . A AC . T . . T . . AGAGGACGAA . T . C . . T . . . . A T . . . . . . . . TATGCTA . . . . . . . . . T . . . .
blockSeqs : G T A A AAA G T . A . . A . A TG . A . . T . . AGAAGACGAA . T . C . . G . . . . T A . . . . . . . . TATGCTA . . . . . . . . . T . . . .
blockSeqs : G T C A GCT A T . A . . A . G AA . A . . A . . AGAGGACGAA . T . C . . T . . . . T T . . . . . . . . TATGCAA . . . . . . . . . C . . . .
blockSeqs : G A G T AGT G A . C . . A . G AC . A . . T . . AGAGGACGAA . A . A . . G . . . . T T . . . . . . . . TATGCTT . . . . . . . . . C . . . .
blockSeqs : T A G T AAA G T . T . . A . G AC . A . . T . . AGAAGATGAA . A . A . . G . . . . T T . . . . . . . . TA . . . . . . . . . C . . . .
blockSeqs : T T A A AAA A T . A . . C . A AC . A . . T . . AAGGACGAA . A . A . . G . . . . T T . . . . . . . . . . . . . . . T . . . .
blockSeqs : T A A GCG A T . A . . C . A TG . T . . T . . GAA . A . A . . G . . . . . . . . . . . . . . . . . . . . C . . . .
blockSeqs : T A A ACT A A . C . . C . A CC . A . . A . . GAA . A . A . . . . . . . . . . . . . . . . . . . .
blockSeqs : T A G GCT A A . C . . C . A A . . . . T . . . . T . C . .
blockSeqs : A G T GCT A A . C . . A . G . . . . . . . . . . . . T
blockSeqs : T . . AAA G A . C . . C . C . . .
blockSeqs : . . . . T . A . . . . .
blockSeqs : . . T . T . .
blockSeqCons : AGAGGACGAA************ TATGCTA**********
originalCons : TAAATTN---AAAATAGCACTCTCTAAACTGCGNTGTTCAGNNCATTCGCTTTTNG-TTGAAACCGGGAGA---CATA--CCAA-TA--TAC-CATAC-------GAACAAAGAATATGC--TTTTTAT--GTAACTC---T----GGA---GAA-ATA------GA------A------TTTCATG-TAATAATGAAATGTGCGTNTTATGATGATTT--GAGAAATCAGTATCTTTC-AGA-ATTTTTG-----A-----ATGGT-A-----ACCA-TAATGGAT-TAAATTTATTCTATAAATTAATGAGTACA--CAAAAC-GATAATTTGTTGATAAAA-----CTCTCCAAATGTGTACTA-GA-A---ATGTTCAATAAACGGAAATACTTTATTCAAGTCCAAAC-TGAAACAAA-----CTAAAATATGAT-----T-----A-----CACCGTT-ATAAGATTCAATTAACACTTGTAA---AGAC------GATATAACATTTTAGACACTCTATGTT-TGATAATTCA------------TATG------------TGTTTTCT----------CTTTT--TATTCCTGATA-------TTGCCTTTATCC-TTTT-GGCACATTGTTGTATTA--T--TATAATATTTGTGTGTATT-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTTTCATAAAATGATTGGTATTAATATGTTTCCTTCNGCTCGTTTTTAAAAANAA
finalCons : TAAATTN---AAAATAGCACTCTCTAAACTGCGNTGTTCAGNNCATTCGCTTTTNG-TTGAAACCGGGAGA---CATA--CCAA-TA--TAC-CATAC-------GAACAAAGAATATGC--TTTTTAT--GTAACTC---T----GGA---GAA-ATAGAGGACGAA------------TTTCATG-TAATAATGAAATGTGCGTNTTATGATGATTT--GAGAAATCAGTATCTTTC-AGA-ATTTTTG-----A-----ATGGT-A-----ACCA-TAATGGAT-TAAATTTATTCTATAAATTAATGAGTACA--CAAAAC-GATAATTTGTTGATAAAA-----CTCTCCAAATGTGTACTA-GA-A---ATGTTCAATAAACGGAAATACTTTATTCAAGTCCAAAC-TGAAACAAA-----CTAAAATATGATTATGCTA----------CACCGTT-ATAAGATTCAATTAACACTTGTAA---AGAC------GATATAACATTTTAGACACTCTATGTT-TGATAATTCA------------TATG------------TGTTTTCT----------CTTTT--TATTCCTGATA-------TTGCCTTTATCC-TTTT-GGCACATTGTTGTATTA--T--TATAATATTTGTGTGTATT-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTTTCATAAAATGATTGGTATTAATATGTTTCCTTCNGCTCGTTTTTAAAAANAA
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): TACAAATATTGCTTATTTTGATAGATTATGTATTTTATGTAATTCACAAGAAAGAGAGGATGAATATTTCACGTTGTCAAGACAACGTTCTTTTACAGCGACCCACGTAACTAATATCTTGCTGA
Unaligned ( gi|21 ): ACAAATATTGCTTATTTTGATAGATTATGTATTTTATGTAATTCACAAGAAAGAGAGGATGAATATTTCACGTTGTCAAGACAACGTTCTTTTACAGCGACCCACGTAACTAATATCTTGCTGAT
Unaligned ( gi|26 ): TGTATTATGGGCCGGTGACCTGAATTACTTTAATAAACTTTTGTCACTGCCATTACAGTCATTG
Unaligned ( gi|27 ): TTTCACGCTGTCATGACATGTACCTTTTATAACGATCTACGTAACCAATATCTTGCTGAT
Unaligned ( gi|28 ): ATTTCACGCTGTCATGACATGTACCTTTTATAACGATCTACGTAACCAATATCTTGCTGA
Unaligned ( gi|29 ): ACTATTGTCATTGTCATTGATGTTTAAAGGAACAATGTGTTACAAACCAAA
Alignments
lowQualScore : 111 11111 111111 222222222222 222222222222 1111111111 1111111 88888888888888888888888888888888888888888888888888888888888 222 1 11 222
lowQualScore : 8888 1 1 2 555 4 0 1 2 2 444 33 3 2 1 55 9999999 0 000 0 0 666666 66 2 1 5 4 1 5555 0 0 3 6 999999 88888 3 88888 3 33 2 44 3 99999 3 3 666 0 4 11111 4 666 777777 3 222222222222 111111111111 4444444444 77 0000000 2 3 3 55 55 44444444444444444444444444444444444444444444444444444444444 111 5 88 1 111 1
lowQualScore : .... . . . ... . . . . . ... .. . . . .. ....... . ... . . ...... .. . . . . . .... . . . . ...... ..... . ..... . .. . .. . ..... . . ... . . ..... . ... ...... . ............ ............ .......... .. ....... . . . .. .. ........................................................... ... . .. . ... .
lowQualScore : 0000 3 7 8 888 4 2 0 4 1 111 22 5 5 7 88 3333333 7 000 1 6 888888 55 5 6 0 1 9 1111 8 1 1 2 333333 33333 3 33333 3 88 6 66 3 11111 6 6 444 1 4 11111 0 444 777777 3 999999999999 777777777777 6666666666 99 8888888 2 3 3 00 00 55555555555555555555555555555555555555555555555555555555555 555 5 00 0 555 0
consensus : TAAATTN---AAAATAGCACTCTCTAAACTGCGNTGTTCAGNNCATTCGCTTTTNG-TTGAAACCGGGAGA---CATA--CCAA-TGTACCATAC-------GAACAAAGAATATGC--TTTTTATGTAACTCTGGAGAAATAG------AGGACGA--ATTTCATG-TAATAATGA-AATGTGCGTNTTATGACGATTT--GNGAAATCAGTATCTTTC-AGA-ATTTTTG-----A-----ATGGT-A-----ACCA-TAATGGAT-TAAATTTATTCTATAAATTAATGAGTACA--CAAAAC-GATAATTTGTTGATAAAA-----CTCTCCAAATGTGTACTA-GA-A---ATGTTCAATAAACGGAAATACTTTATTCAAGTCCAAAC-TGAAACAAA-----CTAAAATATGATTATGCTACACCGTT-ATAAGATTCAATTAACACTTGTAA---AGAC------GATATAACATTTTAGACACTCTATGTT-TGATAATTCA------------TATG------------TGTTTTCT----------CTTTT--TATTCCTGATA-------TTGCCTTTATCC-TTTT-GGCACATTGTTGTATTA--T--TATAATATTTGTGTGTATT-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTTTCATAAAATGATTGGTATTAATATGTTTCCTTCNGCTCGTTTTTAAAAANAA
Reference ( family-736 ) : TAAATTN---AAAATAGCACTCTCTAAACTGCGNTGTTCAGNNCATTCGCTTTTNG-TTGAAACCGGGAGA---CATA--CCAA-TATACCATAC-------GAACAAAGAATATGC--TTTTTATGTAACTCTGGAGAAATAG------AGGACGA--ATTTCATG-TAATAATGA-AATGTGCGTNTTATGATGATTT--GAGAAATCAGTATCTTTC-AGA-ATTTTTG-----A-----ATGGT-A-----ACCA-TAATGGAT-TAAATTTATTCTATAAATTAATGAGTACA--CAAAAC-GATAATTTGTTGATAAAA-----CTCTCCAAATGTGTACTA-GA-A---ATGTTCAATAAACGGAAATACTTTATTCAAGTCCAAAC-TGAAACAAA-----CTAAAATATGATTATGCTACACCGTT-ATAAGATTCAATTAACACTTGTAA---AGAC------GATATAACATTTTAGACACTCTATGTT-TGATAATTCA------------TATG------------TGTTTTCT----------CTTTT--TATTCCTGATA-------TTGCCTTTATCC-TTTT-GGCACATTGTTGTATTA--T--TATAATATTTGTGTGTATT-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTTTCATAAAATGATTGGTATTAATATGTTTCCTTCNGCTCGTTTTTAAAAANAA
gi|1 : TAAATTG---AAAATAGCACTCTCTAAACTACGATGTTCAGATCATTCACTTTTAG-TTGAAACCGGAAGA---CACA--CCAA-TATACAATAC-------GAACAAAGAATATGC--TTTTCATGTAACTCTGGAGAAATAG------A--------ATTCCATG-TAATAATGA-AATGTGCGTATTATGATGATTT--GAGAAATCAGTATCTTTC-AGA-ATTTTTG-----A-----ATGGT-A-----ACCA-TAATGGAT-TAAATTTATTCTATAAATTAATGAGTACA--CAAAAC-GATAATTTGTTGATAAAA-----CTCTCCAAATGTGTACTA-GA-A---ATGTTCAATAAACGGAAATACTTTATTCAAGTCCAAAC-TGAAACAAA-----CTAATACATGAT-----TACACCGTT-GTAAGATTCAACTAACACTTGTAA---AGAC------GATATAACATTTTAGACAATCTATGTT-TGATAATTCA------------TATG------------TGTTTTCT----------TTTTT--TATTCCTGATA-------TTGTCTTTATCC-TTTT-GGCATATTATTGTATAA--T--TATAATATTTGGGTGTATT-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC--------AAAATGATTGGTATTAATATGTTTC--TCAGCTCG---TTAAAAACAA
gi|10 : ATTACGTTGTTCAATGCATTCATTAGTTG-TTGAAACTGGGAGA---CATT--CTAA-TGTCCCTTAT-------GAA-----GATAAGT--ATTTTATGTAATTCACATGTAATTG------AAGATGA--ATTCTATG-TAGTCATGA-ATTTTACCTTCTACCAAGATAT--GCGTGAACAATATCTTAC-AAATATCATTA-----AAAGTTATAGT-A-----ATCA-TAATGTGTACGAATTT----TATAGATCAGTGGGGACC--CAGGAC-ATTAGTTAATTAAAAAAAAAAACCTTGTCAGATTTGT-TTATGA-A---ATGTTTGAAAAAC----ATACTATAcag
gi|11 : ACCGTTTATAAGATTCAAGAAACACTTGTCACCTGGTT------GATATAACATTTTAGATACTCGATGTT-TGTTAATTCAAATTTTGTTTTTTGTGGGGGATTTAATTTGTTTTGT----------TTTTTC-TATTCTTAATA-------TTGTCTTTATCC-TTTTTGGTACATTGTTGTATTA--CTATATAATATTTGTGTATATT-ccatcttctgatagaataagaattagaataataa
gi|12 : GCTACATCGTC-ATAAGATTAAATTAAAACTTGTAA---AGAC------GATATAACATTT--------CTATGTT-TGATAATTCA------------TATG------------TGTTTTCT----------CTTTT--TATTCCTGATA-------TTGCCTTTATCC-TTTT-GGCACATTGTTGTATTA--T--TATAATATTTGTGTGTATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTCATAAAATGATTGA---TAAT-TGTTTCCTTTTGCTTGTTTTTAAAAAGAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatacagctggatttttagcttatactgtcattctcaatggtatggaacaaagcattaataagccaaa
gi|13 : AAATTT---AAAACAGCACTCTCTAAA-----------------TTC-CTTTATG-TTGAAACTGGAAGA---CATA--ACAA-TCTCCCACAT-------AAACAAAGAATATGCTTTTTTTTTGTAACTCTGGAGAAATTG------CGGATGT--TTTTCATatcag
gi|14 : taaatgtttgactgttccctaaaaaaactggcacgcagatttagatcaatggagtgaaactacacataatcagtattttaaaactattctagctgtagaaaggtatctcactttgagaatcccaacgGTTCAGCTCATTCACTTTTAG-TTGAAACCGGAAGA---CATT--CCAA-TATACCATAC-------GAACAAAGAATATGC--TTTTTATGAAACCCTGGAGAAATAT------AGGACGA--ATTTCATG-TAATAATGA-AATGTGCGTATTATGATGATTT--GAGAAATCAGTATCTTTC-AGA-ATTTTTG-----A-----ATGGT-A-----ACC--TAATGGAT-TAAATTTATTCTATAAATTAATGAGTACA--CAAAAC-GATAATTTGTTGAT
gi|15 : cATTA---AGTATAGCTCTTACGCGATTGCGTGTTTCTGCTCAT-CGATTTGAGATTGATACTGGGAGATGGCACAAGCCAAATATA--ATACCTAAAGAGAACA--GAAAATGT--TCTTTATGT--CTCTT----ATTGG------AAGATGA--ATATCCTT-TATTATTGA-AATGTGTTTTATATAATGATCT--CAGAAA-CA-TATATTTC-AAA-
gi|16 : AAATAT---AAAATTGCACTCTCAAAACTGCGTTGTTCAAACCATTCGTTATTTG-TTGAAACAGGGAGA---CATA--C--------------------------AAAAGT-TGC-----TTATG-----CTG-----ATAGATTATTAAGACGA--ATTTCACGCTGAC-ATGA-CATGTACCTTTTATAAAGATCT--ACGTAACCAATATCTTccatacatttagtaaaa
gi|17 : aaacattgagcaataccttactttgaaaatccctttaCTCTGGAGAAATAG------AGGACGA--ATTTCATG-TAATAATGA-TATGTGCGTTTGATGATAATTT--ACGAAATCAGTATCTATC-CG--ATTTTTT-----A-----ATCGA-A-----ACCA-TAATGCA-------TCATTCAATAAATTAATAAGTACA--CAAAAC-GATGACTTGTTGATAACA------TCTCCTAATGTATGATA-GATAAGTATGTTCAACAgct
gi|18 : ACTCTCAAAACTGCGTTGTTCAAAACATTCGTTATTTG-TTGAAACAGGGAGA---CATA--CAAA-TGTTGCTTAT-------GCTGATAGAATATGT--ATTTTGTGTAACTCACAAGAAATAG------AAGATGA--ATTTCACG-CTGTCATAA-CATGTACCTTTTATAACGATCT--ACGTAACTAATATCTT
gi|19 : GATTCAATTAGCACTTGTAA---ATGC------CA------AGTTTAGATATTCGATGTTGTCGTTTTTGT------------TATG------------TATTTTGT----------CT------ATCCTAAATA-------GTGTCTTTATTT-TTTT-GGCACATTGATGTATTACTT--TATAATATTTTTGTgct
gi|2 : TAAATTG---AAAATAACACTCTCTAAACTACGATGTTCAGCTCATTCACCTTTAG-TTGAAACCGGAACA---CATA--C-------------------------AAAGACTATGC--TTTTTATGTAACTCTGGAGAAATAG------AGGACGA--ATTTCATG-TAATAATGA-AATGTGCGTATTATGATGATTT--GAGAAATCAGTATTTATC-TGA-TTTTTTG-----A-----ATGGT-A-----ATCA-TAATGGAT-TAAATTTATTCTATAAATTAATGATTACA--CAAAAC-GATAATTTGTTGATAAAA-----CTCTCCAAATGTGTACTA-GA-A---ATGTTCAATAAACGGAAATATTTTATTCAAGCCCAAAC-TGAAAGAAA-----CTAAAATATGATTATGCTACACCGTT-GTAAGATTCAAATAACACTTGTAA---ATACT-----GATATAACATTTTAGACACTCTATGTT-TGATAATTCA------------TATG------------TGTTTTCC----------CTTTT--TATTCCTGATA-------TTATCTTTATCC-TTTT-AGCGCATTGTTGTACTA--T--TATACTAGTTGTGTGTATT-acacatgtatcatgtgccggtaccttagattgattgaataaac
gi|20 : tAGATTATGT--ATTTTATGTAATTCACAAGAAAGAG------AGGATGAATATTTCACG-TTGTCAAGACAACGTTC-TTTTACAGCGACCC--ACGTAACTAATATCTTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgccaaa
gi|21 : tacaaatattgcttattttgatAGATTATGT--ATTTTATGTAATTCACAAGAAAGAG------AGGATGAATATTTCACG-TTGTCAAGACAACGTTC-TTTTACAGCGACCC--ACGTAACTAATATCTTgctga
gi|22 : acaaatattgcttattttgatATGTT-TATTAATTCA------------TACG------------TTTTTTTTGTGTGTGTTGTTTTTCCTCTTCCGGATAATATGTATTGTCTTTGTCC-TTTT-GGCACATTGTTGTATTA--T--TATA----CTGTATATATT-gctgat
gi|23 : ttcAAATTTGAAAAAATGTC-CTCTCTTATTTCCGATGCTCAAGTCATTCGCTTTTTA-TTGAAACTGGCAGA---CATA--ta
gi|24 : CACTCTCAAAACTGCGTTGTTCAAAACATTCGTTATTTG-TTGAAACAGGGAGA---CATA--TAAA-TGTataacaattgacaacgca
gi|25 : ACTCTCAGAACTGCGTTGTTCAAAACATTCATTATTTG-TTGAAACAGGGAGA---CATA--CAAA-TGTtgcttatgctgatagagtatgtat
gi|3 : tGCCCTCTCTAAACTACAATGTTCAGCGCATTCACTTTTAG-TTGAAACCGGAAGA---CACA--CCAA-TATAACATAC-------GAACAAAGAATATAC--TTTTTATGTAACTCTGGAGAAATA-------AGGACGA--ATTTCATG-TAATAATGA-AATGTGCGTATTATGATGATTT--GAAAAATCAGTATCTTTC-AGA-ATTTTTT-----A-----ATGGT-A-----TCCT-TAATGGAT-AAAATTTATTCTATAAATAAATGAGTACA--CAAAAC-GATAATTTATTTATAAAA-----CTCTCCAAATGTGTACTA-GA-A---ATTTTCAATAAACGAAAATACTTTATTCAAGTTCAAAC-TGAAACAAA-----CTAAAATATGATTATGCTACACCGTT-ATAAGATTCAATTAACACTTGTAA---ATACT-----GATGAAACATTTTAGACACTTT-TTTT-TTATAATTCA------------TATG------------TGTTTTCT----------CTTTC--TATTCCTGATA-------TTGCCTTTATCCTTTTT-GGCACATTGTTGTATTA--T--TATAATATTTGTGTGTATT-tactta
gi|4 : AAATAGCACTCTCTAAACTACGATGTCCAACTCATTCATTTTTAG-TTGAAACCAGAAGA---CACA--CCAA-TATACCATAC-------GAACAAAGAATATGC--CTTTTATGTTACTCTGGAGAAATAG------AAGACGA--ATTTCATG-TAATAATGA-AATGTGCGTATTATGATGATTT--GAGAAATCAGTATCTTTC-AGA-ATTTTTG-----A-----ATGGT-A-----ACCA-TAATGGAT-TAAATTTATTCTATAAATTAATGAGTACA--CAAAAC-GATAATTT-TTGACAAAA-----CTCTCC--------------A-A---ATGTTCAATAAACGGAAATACTTTATTCAAGTCCAAAC-TGAAACAAA-----TTTAAATATGACTATGCAACACCGTT-ATAATATTCAATTAACACATGTTA---AGAC------GATATAACATTTTAGACACTCTATGTT-TGATAATTTG------------TATA------------TGTTTTCT----------CTTTT--TATTCCTGATA-------TTGCCTTTATCC-TTTT-GGCACACTGTTGTATTA--T--TATAATATTTGTGTGTATT-nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgtca
gi|5 : TAAATTG---AAAATAGCACTCTCTAAACTACGATGTTCAGCTCATTCACTTCTAG-TTGAAACCGGAAGA---CACA--ACAA-TATACCATAC-------GAACAAAGAACATGC--TTTTCATCTAACTCTGGAGAAATAG------AGGACGA--ATTTCATG-TAATAATGA-AATGTACGTATTACGATGATTT--GAGAAATCAGTATCTTTT-AGA-ATTTTTG-----A-----ATGGT-T-----ACCA-TAATGGAT-TAAATTTATTTTATAAATTAACGAGAACA--CAAAAC-GATAATTTGTTGATAAAA-----CTCTCCAAATGTGTACTA-GA-A---ATGTTCAATAAACGGAAATACTTTACTTAAGTCCAAAC-TGTAACAAA-----CTAAAATATGATTATGCTACAGCGTT-ATAAGGCTCAATTAACATTTGTAA---GGAC------GATATAACATTTTAGACACTCTATATT-TGATAAGTCA------------TATA------------TGTTTTC-----------CTTTT--GGC-----ACA-------TTG---------------------TTGT---ATTA--T--TATAACATTTGTGTGTATT-nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgtcata
gi|6 : TAAATTG---AAAATAGCACCCTCTAAACTACGGTGTTCAGCTCATTCACTTTTAG-TTGAAACCGAAAGT---AACA--CCAA-TATACCATAC-------GAACAAAGAATATGC--TTTTTATGTAACT--GGAGAAATAG------AGGACGA--ATTTCATG-TAATAATGA-ATTGTGCGTATTATGATGCTTT--GAGAAATCAGTATCTTTC-AGA-ATTTTTG-----A-----ATGGT-A-----ATCA-TTATGGAT-TAAATTTATTCTATAAAT--------ACA--CAAAAC-GATGATTTGTTGATAACA-----CTCTCCAAATGTGTATTA-TA-A---ATGTTCAATAAACGGAAATACTTTATTCAAGTCTAAAC-TGAAACAAA-----CTAAAATATGATTATGCTACACCGTT-ATAAGATTCAATTAACACTTGTAA---AGAC------GATATAACATTTAATACACTCTATGTT-TGATAATTCA------------TATG------------TGTTTTCT----------CTTTT--TATTCCTGATA-------TTGCCTTTATCC-TTTT-GTCACATTGTTGTATTA--T--TATAATATTTGTTTGTATT-nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgtgaaaaa
gi|7 : AAATAT---AAAATTGCACTCTCAAAACTGCGTTGCTCAAAACATTCGTTATTTG-TTGAAACAGGGAGA---CATG--CAAA-TGTTGCTTAT-------GCTGATAGAGTATGT--ATTTTGTGTAACTCACAAGAAATAG------AAGATGA--ATTTCACG-CTGTCATGA-CATGTACCTTTTATAACGATCT--ACGTAACCAATATCTTGC-TGATATTATTAACTATA-----ACGATCACAACTACCA-TAATGTAT----ATGAATTCTACAGTTTGATGAGTACAACCAATTCTGACAA---GATAATCAAA-----CTGGCAAAGTTTGTATTT-GA-G---ATGTTTAATAAA-AGAACT-CTTTACC----TCCAATCTTAAAACAAAATGACTTAAAACATAATtgtaatatgggccggtggcctcagttacttgaataaac
gi|8 : taaacgtgtaacagattgtgctctgcaaaattggcatgctgatgtccatgaatcaagaaaagctattcattataagcactttaaaacgcaactaaacgttgagcaataccttactttgaaaatccctttaAATTT---AAAACAGCACTCTCTAAA-----------------TTC-CTTTATG-TTGAAACTGGAAGA---CATA--ACAA-TCTCCCACAT-------AAACAAAGAATATGCTTTTTTTTTGTAACTCTGGAGAAATTG------CGGATGT--TTTTCATG-AAATAATga
gi|8 : GA-AAT-TGCG------GATGTTTTTCATGAAATAATTATCCTTCGAAA-ATGTGT------A-----ACGGT-A------CTAGTAATGGAT-TAAATTTCTTCTATAAAT-AATGAATATA--CAAAAC-AATAATT----GATAGAA-----ATCTGCAAATGTGTACTA-GA-A---CTGTTCAATAAACAGAA-----TTAT-----TCCAAGC-AGACCTAAA-----TTAAAATATGATTATGCAACACCG---------------CAACATTTGTAA---ATGCTGGGTTGATATAACATTTTAGACACTTGATGTT-TGTTAACTCAAAT---------TATAAT----------TCTTTTCT-----------TTTC--TATTCCTGCTA-------TTATCTTTATCG-TTGA-GGCACATTGTTGTTTTtatccttcgaaaatgtgtaacggtactagtaatggattaaatttcttctataaataatgaatatacaaaacaataattgatagaaatctgcaaatgtgtactagaactgttcaataaacagaattattccaagcagacctaaattaaaatatgattatgcaacaccgcaacatttgtaaatgctgggttgatataacattttagacacttgatgtttgttaactcaaattataattcttttcttttctattcctgctattatctttatcgttgaggcacattgttgtttt
gi|9 : aatttaaaacagcactctctaaattcctttatgttgaaactggaagacataacaatctcccacataaacaaagaatatgctttttttttgtaactctggaATCAGTATCTTTC-AGA-ATTTC-G-----A-----ATGGT-A-----ACCA-TAATGGAT-TAAATTTATTCTATAAATTAATGAGTACA--CAAATC-GATAATTTGTCGATAAAA-----CTCTCCAAATGTGTACTA-GA-A---ATGTTCAATAAACGGAAATACTTTATTCAAGTCCAAAC-TGAAACAAA-----CTAAAATATGATTATGCTTCACCGTT-ATCAGATTAAATTAACACTTGTAA---AGAC------GATATAACATTTTAGACACTCTATGTT-TGATAATTCA------------TATG------------TGTTTTCT----------CTTTT--TATTCCTGATA-------TTGCATTTATCC-TTTT-GGCACATTGTTGTATTA--T--TATAATATTTGTGTGTATT-
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|26 ): TGTATTATGGGCCGGTGACCTGAATTACTTTAATAAACTTTTGTCACTGCCATTACAGTCATTG
Unaligned ( gi|27 ): TTTCACGCTGTCATGACATGTACCTTTTATAACGATCTACGTAACCAATATCTTGCTGAT
Unaligned ( gi|28 ): ATTTCACGCTGTCATGACATGTACCTTTTATAACGATCTACGTAACCAATATCTTGCTGA
Unaligned ( gi|29 ): ACTATTGTCATTGTCATTGATGTTTAAAGGAACAATGTGTTACAAACCAAA