lowQualScore : 1 1 222222222222222222 7777777777777777777777777777777777777777777777777777777 1111 11 5555555555555555555555555555555555555555555555555555555555555555 1111111 11111 1 22222 3333 222222222 22222 11111 222222222 11111111111 1 11111 222 2222 111 1111 11
lowQualScore : 7 5 4 8 6 5 6 999999999999999999 1111111111111111111111111111111111111111111111111111111 5 5 66 7777 11 8888888888888888888888888888888888888888888888888888888888888888 4444444 11111 0 7 55 666 3 22222 0 3 0000 6 1 55 666 666666666 8 3 77 1 00000 55 777 00000 555555555 1 66666666666 6 0 55 00000 111 8 3 1111 777 4 11 4 1 2 3333 22
lowQualScore : . . . . . . . .................. ....................................................... . . .. .... .. ................................................................ ....... ..... . . .. ... . ..... . . .... . . .. ... ......... . . .. . ..... .. ... ..... ......... . ........... . . .. ..... ... . . .... ... . .. . . . .... ..
lowQualScore : 0 0 4 9 0 0 0 555555555555555555 9999999999999999999999999999999999999999999999999999999 0 0 99 5555 55 3333333333333333333333333333333333333333333333333333333333333333 4444444 88888 7 6 00 444 0 22222 2 3 8888 2 6 00 444 000000000 0 2 77 8 77777 00 111 00000 000000000 6 99999999999 5 5 00 44444 999 5 6 9999 888 4 00 4 1 9 9999 66
consensus : TTTCAATAATATG-TTT-TT-ATTCACATCAAACATTTACAAAGTTTTGCAT------------------GTATAATTTACAGCANTGACATAATATTTT---ATG-------AT---A-----CA----CATA------CAC-A-CA--CAC----ATAC-TATTA---CAATC--------------ATAT---AT---N-T-----AT---CAT-------TT----TTT-------AAGGTA----TGTTTTTCGGAA--TTATGC---TTTCTATAATATAAGGCTAT-TC-ACATATCGCTAGTAATAT--T---CAT---TAA---TAGTAAA-CCTATAATATAGATGTCCCTA-AAGTTACAAAACTA--AAGTA--TTTATTTGATGC-----AAA--C-A---TTTTTTT-------AACTATAGGAGGATAGCTTAG--A----GATGTT--TAGAANAG-AAACAAAG---AGGATCGATAGTTGAAA-AAGTGAAAGT-TGTAGTAGAAGATG----AAAATTGCCAAGATGTC
Reference ( gi|5 ) : TTTCAAAAATATG-TTT-TT-ATTTAGATCAAACATTTACAAAGTTTTGCAT------------------GTATAATTTACAGCACTGGCATAATATTTT---ATG-------AT---A-----CA----CATA------TAC-A-CA--CAC----ATAC-TATT----CAATC--------------ATAT---AT---T-T-----AT---CAT-------TT----TTT-------AAGGTA----TGTTTTTTGGAA--TTATGC---TTCCTATAACACAAGGCTAT-TT-A-ATATCGCTAGTGATAT--T---CAT---TAC---TAGTAAA-CCTATAACATAGATGTCCCTA-AAATTACAAAACTA--AAGTA--TTTATTTGATGC-----AAA--C-A---TTTTTTT-------AACTATAGCAGGATAGCTTAG--A----GATGTT--AAGAATAG-AAACAAAG---TGGATCGATAGTTGAAA-AAGTGAAAGT-TGTAGTAGAAGATG----AAAGTTGCCAAGATGTC
gi|3 : TTTCAATTATATA-TTT-TT-ATTCACATCATATATTTACAAGGTTTTGCAT------------------GTATAATTTACAGCA--GACATATTTTTTTTCTATGTA-----AT---A-----CA----CACA------TAT-A-CA--CAC----ATAT-TATTA---CAATCGTATATATATATATATAT---AT---A-T-----AT---CTT-------TT----TTTTTTTTTCAAGATAACTATGTTTTTCCGA---TTATGC---TTTCTATAATGTAAGGCTAT-TT-ACATATCGCTAGTAATATATC---CAT---TAA---TAGTAAA-CATATACTATAGATGTCCCTA-AAGTTACAAAACTT--AAGTA--TTTATTTGATGC-----AAA--C-AAATTTTTTTT-------AATCATATGAGGATAGTTTAG--A----GATGTT----TAATTG-AATCAAAG---AGGGTCGATAG-TGAAA-AAGTAAAAGT-TGTAGTATAAGATGA---AAAATTACCAAGATGTC
gi|4 : tTTTCAATAATATG-TTT-TTTATTCACAGCAAACATTAACAAATTATTGCATGTATTGCAATTATTGCAAGTATAATTTACAGCAATGAC---ATATTTT----TG-------ATAGAA-----CACAATCATAATTT--TAT-A-TA--CAC----ATAC-TATT------ATC--------------ATA----A------C-----AT---TGT-------TT----TTT-----------------TGTTT-----AAGTTTATGC---TT--TTTAA---AAGACTAT-TCAA-ATATCGCTCTTGATAT--T---CAT---TTA---TAGTAAA-CCTGTAATATAGATGTCTCTACAAA--ACTAAACTATTAAAT---TTTATTTGATCC-----AAA--C-A---TATTTTT-------AATAAAAGGAGGATAGCTTGG--A----AATGTT--TAAAATAG-AAATGAGA---AGGTTCAATAG-TGAAA-AGATGAAAGT-TGTGGTAGAACATG----ATAATTGCCAAGATGTCtctgttgtttttttaaaatgtttatattgaatatattgttttctaacataacattagaaata
gi|11 : ttTCCAATAATATA-TTT-TT-ATCCACATCAAATACTTACAAAGTTTTGCAT------------------GTGCAATTTACAGCACTGACATA----TTT---AAG-------AT---AGAATTCA----CATACATGTTTAT-A-CA--CAC----ATAT-AATTA---CAATC--------------ATAT---ATAAATAT-----ATAAATATATATATATA----TTT-------AAGGTT----TGTTTGTAGAAA--TTATGCAAAT--CTATAATATAAAACTGT-TA-ACATATCGCTAtcaactgcttttttttttaaaacattttttttattttgcagattctattttcttacataaaataataggaaataa
gi|19 : ttaTTCAATAATATG-TTT-TT-ATTCACATAAAACATTTACAAAGTTGTGCAT------------------GTTTAATTTACAGCAtta
gi|14 : TCAATAATATG-TTT-TTTATTCACCTCAAACTTTTACACAGATTTGCAT------------------GAATAGTTTACAGCATTTACATA----TTT---AAG-------AT---A-----GA----AA-A------CAC-A-CA--TACCGGTATA--TATTTACACACAC--------------ATAT---AC---T-TATACAAT---CATAC-----TG----TTT-------AAAGTT----TG-TTTTTGCAA--ATATGA---TT--TAT---ATAAGGCTAT-TC-ACATATat
gi|2 : tttttttgAATAATATG-TTT-CA-ATTCACATCAAACATTTACAAAG---TAAAT------------------ACATAATTTACAACACTAACATAGT
gi|1 : AATACGGTCTGTT-ATCCATATCAAATATTTACACAG----GTAT------------------GTATGATTTACAACAATGG---ACTATTTT----TGGTAAAACAT---A-----CA----CATA------CAC-A-TAAACAC----ATACAGATA----CAATC--------------ATATTGAAT---T-T-----CT---TAT-------TTGG--TTC-------AAGA-A----CGAGTTTCGGAA--TTATGC---TTTTTAT-----AAGGCTATCTT-C-ATATTGCCA-------------CA-----AC---TATT-----------CATTGATGT---TA-ATATTGT----TTA-----TA--TTGTTTTAATGC-----GTA--C-A---CTTTTTTCCAAGAAAAC-GTAGGAGGATAGCTCAA--T----AATGGT--TAGAAAAG-AAACCAAG---ATGACCGGTAATT-AAA-ATGAGAAAAG-TGTAGTAGAAGATA----AAAAATGTCAAGATGttagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgatataattatttttttatttcagttcttgtttgataccgtttgtctttttcggaatgatgctttttatatagctattcacacatcgctagtatctttcatatatacatgtagtaacccaatattgtagatgtctctacaaaatacactaaagtaacttaagtaataataagaagatgactcagagatgtttagagaaaagaaacaaagaaggtcgttagagaaaaagtaaaagttgttgtagaagatgaaaattgccaagatgtcttagttgggttttaaaaaaagtttattttgaggatactatttctgacaagacatataagaaaataaaaagcgcctatttctggttaagaatttctaacttatctttataaagagcgatgtgttttttcaattctaatgcttttattcaaat
gi|15 : tttataaaatcatgtacttgacttgaatgtttttttcccattAATTTG-TTT-TT-ATTCACCTCAAACATTTACAAAGATTTGCAT------------------GTACGATTTACAGCAATGAC---ATATTTT---AT--------AT---A-----GA---------------AC-A-CA--TAC----ATA--TGTC----CA--T--------------ATAT---AT---aataataacttatcttaattaacagcgaagctttttttttaatttcaattattttattcaaatacgttacgaacacatttaaacatgtagctgtgtttactcgcttctgaagataaagtatttattatttataataataaaattgattagagcattttgtaa
gi|6 : atTT-TT-ATTCACATCAAATATTTACAAAGTTTTGCAT------------------GTATAATTTACAATACTGACATAACA---------GA------AT---A-----CA----CACA------TACTATTA--CAC----ATAC-TATTA---CA--C--------------ACAT---AT---T-T-----AT---AA----------------T-------AAGGTT----TGTTTGTCCGAG--TTATGC---TTTCTATAATATAAGACTAC-TC-ACAAATCGATAGTAATAT--T---CATG--TA----TAGTAAA-CCTA-AATATAGATGTCACTA-AGGTTACAAAACTT--AAGTA--TGTATTTGATGC-----GAA--CAA---ATATTTT-------AATTACAGGAGGCTAGCTGAG--A----GATGTT--TAGAATAGAAAACAAAG---AAGATCGATAG-TGAAA-ATAAGGAAGT-TGTAGTAGAAGTTG----AAAcaccagtaatgttcatatatagtaaacctataatatagatgtctctgcaaaactaaaatatttttattttgaagatatgaattt
gi|16 : gATCAAACATTTACAAAATTTTG--------------------------AT---CAAAA--GGC-CAA-ATTTT---AT--------AT---A------------ATA------CAC-A-CA--TACCG--GTAC-TATTA---CAATC--------------ATAC---AT---A-T-----AT---CAT-------TTCA--TTT-------AAAGTA----TGTTTTTAAGAA--TTATGC---TTTCTATAACATAAG--TAC-T-----TATCGCTAGTAATTT--T---CAT---TAa
gi|12 : tatgtctgatataac--------------ATAT---AT---A-T-----AT---CAT-------TTAATTCTT-------AAGGTA----TGTTTTTCGGAA--TTATGC---TTTCTATAATATAAGGCTAT-TT-ACATATCACTAGTAATTG--T---CAT---AAT---TAGTAAA-CATATAATATAGATGTCCCTA-AAGTTACAAAACTA--AAGTA--TTTAGTTGATGC-----AAAAGC-A-----TTTTT-------AATTATAGGATGATAGCTTAG--A----GATGTT--TAGAAAAG-AAA
gi|7 : tatatat-------TT----TTT-------AAAGTA----TGTTTTTCGGAA--CTATGC---TTTCTATAATATAATTATAT-TT-ACATATCGTTAGTAATAT--TATTCAT---TAA---AAGTAAAACCTGTA-TAAAAGTGTCCATA-AAGTTACAAAACTA--AAGTA--TTTATTTGGTGC-----CAA--C-AAC-TTCTTTT-------ATC-ATAGTAGGATAGTTTAGCTATACTTATATT--GATAATGG-AACCAAga
gi|2 : ataatgtttagcagatatttcatatgaaatagtattaaatacattgatttagttataattatatattttttctcaataaaatgttttcattaacattaaacattctcTTTTTCGGAA--TGATGC---TTTTTATA---TA--GCTAT-TC-ACACATCGCTAGTATCTT--T---CATATATACATGTAGTAAC-CCAATATTGTAGATGTCTCTACAAAATACA---CTA--AAGTA-----ACTTAA-GT-----AA---------------T-------AA---TAAGAAGATGACTCAG--A----GATGTTTAGAGAAAAG-AAACAAAG---AAGGTCGTTAGA-GAAA-AAGTAAAAGT-TGTTGTAGAAGATG----AAAATTGCCAAGATGTC
gi|9 : aataatatgtttcaattcacatcaaacatttacaaagtaaatacataatttacaacactaacatagtttagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgatataattatttttttatttcagttcttgtttgataccgtttgtcAA--TTATGC---TTTTTATGAT-TAAGGCTAT-TC-GCATATCGTTAGTTATAT--T---CAC---TAA---TAGTAAA-TCTATAATATAGATGTCCCTT-AAGCTGCAAAACTT--AAGGA--TTTATTTGTTTC-----AAA--C-A---TTTTTTT-------AACTATAG------------G--A----GATGTT--TAGAACAG-ACACAGAG---AGGATCGACAG-TGACA-AAGTGAAAGT-TGTAGT---TGATG----AAAATTGCCAAGATGTCttagttgggttttaaaaaaagtttattttgaggatactatttctgacaagacatataagaaaataaaaagcgcctatttctggttaagaatttctaacttatctttataaagagcgatgtgttttttcaattctaatgcttttattcaaat
gi|10 : tgctatttcaaatttcctttttatgcttagtgagctaccAAGCTAT-TT-ACATATCGCTGGTACAAT--T---CAT---TTA---TGGTAAAACTTA-AATATTGATGTCTCTA-------CAAAACTA--AAATA--GTTGTTTGATGCGGACAAAA--A-A---GTACTGT-------GATAATAGGCGAATAGCTAAG--G----AATGTT--CAGAA-AG-GAACCAAG---AGGATCGATAATTAAAATAAATGAAAGT-TGTAGTAGAA--------AAA--TGCCAAGATGTCtcggttgt
gi|15 : -ATATCACCAGTAATGT--T---CATA--TA----TAGTAAA-CCTATAATATAGATGTCTC-------TGCAAAACTA--AAATATTTTTATTTtcggctgggttctatttaaaat
gi|8 : ataatttgtttttattcacctcaaacatttacaaagatttgcatgtacgatttacagcaatgacatattttatatagaacacatacatatgtccatatTAAATGTCTCCA-------CAAAACTA--AAATA------------GT-----AAA---------TCTATT-------A-CTA--GGAGAATAA--TAG--A----AATGAT--TAGAAGAG-AAACAAAG---ATGATCGATAGTTCAAA-AG--AAAAATATGTA-TAGAAAATGAAAAAAAAATGCCATAATGTCtgaagatatgaattt
gi|17 : TAGGAAGATAGCTTAA--A-----ATGTT--TAGAAAAG-AAAATAAGGCCTGGATCGATAATT-AAA-AAGTGAAAGT-TGTAGTA------G----AAAACTACCAAGATGtcagttaggtttttatttatttatttatttattttttttttggaaaatattattaattttctaacacaacatattagaaaataaaagttgcccatttcggtaatgcatttctaactcgttcttaatgagcgatgtgttttgcaactttaattgttttatttaaata
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): GAAAATAAAAAGCGCCTATTTCTGGTTAAGAATTTCTAACTTATCTTTATAAAGAGCGATGTGTTTTTTCAATTCTAATGCTTTTATTCAAATAAGTTTTGAACACATTTAAACATGGGGTTGTATTACTATACTTGTTTCTGAAGATACGATATTTACCACGTATTATAATAACATTCATAAGCGCAATTTTTA
Unaligned ( gi|18 ): AACTAAAATATTTTTATTTTGAAGATATGAATTTCTAACTGATCTTTGTAAACAACGATGTGTTTTTCGATTTCAGTTCTTTTATTTAAAAGTTT
Unaligned ( gi|20 ): TTTAAAAGGTTTGTACGATTGACACCTATGAATAAATAAT
Alignments
lowQualScore : 222222222222222222 44444444444444444444444444444444 11111111111 1111 111111111 22222222222222 11111 11111 33333333333 1111111 111111111111 1111111 1111111 222222222 11111111111 1 1111
lowQualScore : 4 4 4 4 4 666666666666666666 4 4 5 33333333333333333333333333333333 66 77777777777 9999 66 5555 55 777 222222222 33333333333333 777 666 11111 11111 22222222222 3333333 99999 2 44 3 3 222222222222 44 44 3 3 0 7777777 5555555 99999 000000000 0 22222222222 3 55 4 3 777 3 4 4 4 1 2222 1
lowQualScore : . . . . . .................. . . . ................................ .. ........... .... .. .... .. ... ......... .............. ... ... ..... ..... ........... ....... ..... . .. . . ............ .. .. . . . ....... ....... ..... ......... . ........... . .. . . ... . . . . . .... .
lowQualScore : 4 0 0 0 6 888888888888888888 5 0 7 44444444444444444444444444444444 11 66666666666 4444 11 6666 33 888 777777777 55555555555555 000 555 11111 11111 33333333333 0000000 77777 8 66 3 2 000000000000 66 33 6 6 8 8888888 3333333 11111 222222222 6 00000000000 7 00 5 6 000 2 1 0 0 6 5555 1
consensus : TTTCAATAATATG-TTT-T-T-ATTCACATCAAACATTTACAAAGTTTTGCAT------------------GTATAATTTACAGCANTG-ACATAATATTTT---AT---G-------ATA-----CA--CATA----C------ACAC----A--CAC----ATAC-TATT---AC----AA---TC--------------ATAT---AT--NT-----AT-----CAT-------TT--TTT-------AAGGTA----TGTTTTTCGGAA--TTATGC-TTTCTATAATATAAGGCTATTCACATATCGCTAGTA--------A---TAT--TCATTNATAGT-AAA-CCTATAATATAGATGTCCCTA-AAGTTACAAAACTAAAGTA------TTTATTTGATGC-----AAA--C-A---TTTTTTT-------AACTATAGGAGGATAGCTTAGAGATGTTTAGA--ANAG-AAACAAAGA---GGATCGATAGTTGAAA-AAGTGAAAGT-TGTAGTAGAAGATG----AAAATTGCCAAGATGTC
Reference ( family-6423 ) : TTTCAATAATATG-TTT-T-T-ATTCACATCAAACATTTACAAAGTTTTGCAT------------------GTATAATTTACAGCANTG-ACATAATATTTT---AT---G-------ATA-----CA--CATA----C------ACAC----A--CAC----ATAC-TATT---AC----AA---TC--------------ATAT---AT--NT-----AT-----CAT-------TT--TTT-------AAGGTA----TGTTTTTCGGAA--TTATGC-TTTCTATAATATAAGGCTATTCACATATCGCTAGTA--------A---TAT--TCATTAATAGT-AAA-CCTATAATATAGATGTCCCTA-AAGTTACAAAACTAAAGTA------TTTATTTGATGC-----AAA--C-A---TTTTTTT-------AACTATAGGAGGATAGCTTAGAGATGTTTAGA--ANAG-AAACAAAGA---GGATCGATAGTTGAAA-AAGTGAAAGT-TGTAGTAGAAGATG----AAAATTGCCAAGATGTC
gi|1 : CATTAATACGGTCTGT-T-ATCCATATCAAATATTTACACAG----GTAT------------------GTATGATTTACAACAATGGAC----TATTTT----T---GGTAAAACATA-----CA--CATA----C------ACAT----AAACAC----ATAC-AGAT---AC----AA---TC--------------ATATTGAAT--TT-----CT-----TAT-------TTGGTTC-------AAGA-A----CGAGTTTCGGAA--TTATGC-TTTT-----TATAAGGCTATCTTCATATTGCCACAA--------C---TAT--TCATTGAT-GT---------TAATAT---TGT---------TTA-----------TA------TTGTTTTAATGC-----GTA--C-A---CTTTTTTCCAAGAAAAC-GTAGGAGGATAGCTCAATAATGGTTAGA--AAAG-AAACCAAGA---TGACCGGTAATT-AAA-ATGAGAAAAG-TGTAGTAGAAGATA----AAAAATGTCAAGATG
gi|10 : tttataaaatcatgtacttgacttgaatgtttttttccAAGCTATTTACATATCGCTGGTA--------C---AAT--TCATTTATGGT-AAAACTTA-AATATTGATGTCTCTA-------CAAAACTAAAATA------GTTGTTTGATGCGGACAAAA--A-A---GTACTGT-------GATAATAGGCGAATAGCTAAGGAATGTTCAGA--A-AG-GAACCAAGA---GGATCGATAATTAAAATAAATGAAAGT-TGTAGTAGAA--------AAA--TGCCAAGATGTCaataataacttatcttaattaacagcgaagctttttttttaatttcaattattttattcaaatacgttacgaacacatttaaacatgtagctgtgtttactcgcttctgaagataaagtatttattatttataataataaaattgattagagcattttgtaa
gi|11 : TCCAATAATATA-TTT-T-T-ATCCACATCAAATACTTACAAAGTTTTGCAT------------------GTGCAATTTACAGCACTG-ACATA----TTT---AA---G-------ATAGAATTCA--CATA----CATGTTTATAC----A--CAC----ATAT-AATT---AC----AA---TC--------------ATAT---ATAAAT-----ATATAAATATATATATATA--TTT-------AAGGTT----TGTTTGTAGAAA--TTATGCAAATCTATAATATAAAACTGTTAACATATCGCTATTA--------tcggctgggttctatttaaaat
gi|12 : tta--------------ATAT---AT--AT-----AT-----CATTTAA---TT--CTT-------AAGGTA----TGTTTTTCGGAA--TTATGC-TTTCTATAATATAAGGCTATTTACATATCACTAGTA--------A---TTG--TCATAATTAGT-AAA-CATATAATATAGATGTCCCTA-AAGTTACAAAACTAAAGTA------TTTAGTTGATGC-----AAAAGC-A-----TTTTT-------AATTATAGGATGATAGCTTAGAGATGTTTAGA--AAAG-AAA
gi|14 : tatatatTCAATAATATG-TTT-TTT-ATTCACCTCAAACTTTTACACAGATTTGCAT------------------GAATAGTTTACAGCATTT-ACATA----TTT---AA---G-------ATA-----GA--AA-A----C------ACAC----A--TACCGGTATA--TATTTACAC----AC---AC--------------ATAT---AC--TTATACAAT-----CATAC-----TG--TTT-------AAAGTT----TGTTTTT-GCAA--ATATGA-TTT-----ATATAAGGCTATTCACATATga
gi|15 : tttttttgATAATTTG-TTT-T-T-ATTCACCTCAAACATTTACAAAGATTTGCAT------------------GTACGATTTACAGCAATG-AC---ATATTTT---ATATAG-------A-A-----CA--CATA----C------ATAT----G--TCC----ATATATATC---ACCAGTAATGTTC--------------ATAT---AT--
gi|15 : ATATATCACCAGTA--------A---TGT--TCATATATAGT-AAA-CCTATAATATAGATGTCTC-------TGCAAAACTAAAATATT----TTTATTTagtaaacctataatatagatgtctctgcaaaactaaaatatttttattttgaagatatgaattt
gi|16 : ataatttgtttttattcacctcaaacatttacaaagatttgcatgtacgatttacagcaatgacatattttatatagaacacatacatatgtccatACATCAAACATTTACAAAATTTTG--------------------------AT---CA--AAAG-GC-CAA-ATTTT---AT-----------ATA----------ATA----C------ACAC----A--TACCG--GTAC-TATT---AC----AA---TC--------------ATAC---AT--AT-----AT-----CAT-------TTCATTT-------AAAGTA----TGTTTTTAAGAA--TTATGC-TTTCTATAACATAAG--TACT----TATCGCTAGTA--------A---TTT--TCATTAtgaagatatgaattt
gi|17 : tatgtctgatataTAGGAAGATAGCTTAAA-ATGTTTAGA--AAAG-AAAATAAGGCCTGGATCGATAATT-AAA-AAGTGAAAGT-TGTAGTA------G----AAAACTACCAAGATG
gi|19 : taaaagTTCAATAATATG-TTT-T-T-ATTCACATAAAACATTTACAAAGTTGTGCAT------------------GTTTAATTTACAGCAATactcagttggattttgttttgaaaaactagtatttctaacattatctaaaaaaaaaaaaaggtgactaattc
gi|2 : AATAATATG-TTT-C-A-ATTCACATCAAACATTTACAAAG---TAAAT------------------ACATAATTTACAACACTA-ACATAGT
gi|2 : TTTTTCGGAA--TGATGC-TTTTTATA---TA--GCTATTCACACATCGCTAGTATCTTTCATA---TAT--ACAT--GTAGT-AAC-CCAATATTGTAGATGTCTCTACAAAATACA---CTAAAGTA---------ACTTAA-GT-----AA---------------T-------AA---TAAGAAGATGACTCAGAGATGTTTAGAGAAAAG-AAACAAAGA---AGGTCGTTAGA-GAAA-AAGTAAAAGT-TGTTGTAGAAGATG----AAAATTGCCAAGATGTCttagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgatataattatttttttatttcagttcttgtttgataccgtttgtctttttcggaatgatgctttttatatagctattcacacatcgctagtatctttcatatatacatgtagtaacccaatattgtagatgtctctacaaaatacactaaagtaacttaagtaataataagaagatgactcagagatgtttagagaaaagaaacaaagaaggtcgttagagaaaaagtaaaagttgttgtagaagatgaaaattgccaagatgtcttagttgggttttaaaaaaagtttattttgaggatactatttctgacaagacatataagaaaataaaaagcgcctatttctggttaagaatttctaacttatctttataaagagcgatgtgttttttcaattctaatgcttttattcaaat
gi|3 : aataatatgtttcaattcacatcaaacatttacaaagtaaatacataatttacaacactaacatagtttagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgatataattatttttttatttcagttcttgtttgataccgtttgtcTTTCAATTATATA-TTT-T-T-ATTCACATCATATATTTACAAGGTTTTGCAT------------------GTATAATTTACAGCA--G-ACATATTTTTTTTCTAT---GTA-----ATA-----CA--CACA----T------ATAC----A--CAC----ATAT-TATT---AC----AA---TCGTATATATATATATATAT---AT--AT-----AT-----CTT-------TT--TTTTTTTTTCAAGATAACTATGTTTTTCCGA---TTATGC-TTTCTATAATGTAAGGCTATTTACATATCGCTAGTA--------A---TATATCCATTAATAGT-AAA-CATATACTATAGATGTCCCTA-AAGTTACAAAACTTAAGTA------TTTATTTGATGC-----AAA--C-AAATTTTTTTT-------AATCATATGAGGATAGTTTAGAGATGTTT--A--ATTG-AATCAAAGA---GGGTCGATAG-TGAAA-AAGTAAAAGT-TGTAGTATAAGATGA---AAAATTACCAAGATGTCttagttgggttttaaaaaaagtttattttgaggatactatttctgacaagacatataagaaaataaaaagcgcctatttctggttaagaatttctaacttatctttataaagagcgatgtgttttttcaattctaatgcttttattcaaat
gi|4 : tTTTCAATAATATG-TTT-T-TTATTCACAGCAAACATTAACAAATTATTGCATGTATTGCAATTATTGCAAGTATAATTTACAGCAATG-ACATA---TTTT----T---G-------ATAGAACACAATCATAATTTT------ATAT----A--CAC----ATAC-TATT---A----------TC--------------ATA--------AC-----AT-----TGT-------TT--TTT-----------------TGTTT-----AAGTTTATGC-TTTTTA----A-AAGACTATTCAAATATCGCTCTTG--------A---TAT--TCATTTATAGT-AAA-CCTGTAATATAGATGTCTC-------TACAAAACTAAACTATTAAATTTTATTTGATCC-----AAA--C-A---TATTTTT-------AATAAAAGGAGGATAGCTTGGAAATGTTTAAA--ATAG-AAATGAGAA---GGTTCAATAG-TGAAA-AGATGAAAGT-TGTGGTAGAACATG----ATAATTGCCAAGATGTCtctgttgtttttttaaaatgtttatattgaatatattgttttctaacataacattagaaata
gi|5 : ttTTTCAAAAATATG-TTT-T-T-ATTTAGATCAAACATTTACAAAGTTTTGCAT------------------GTATAATTTACAGCACTG-GCATAATATTTT---AT---G-------ATA-----CA--CATA----T------ACAC----A--CAC----ATAC-TATT----C----AA---TC--------------ATAT---AT--TT-----AT-----CAT-------TT--TTT-------AAGGTA----TGTTTTTTGGAA--TTATGC-TTCCTATAACACAAGGCTATTTA-ATATCGCTAGTG--------A---TAT--TCATTACTAGT-AAA-CCTATAACATAGATGTCCCTA-AAATTACAAAACTAAAGTA------TTTATTTGATGC-----AAA--C-A---TTTTTTT-------AACTATAGCAGGATAGCTTAGAGATGTTAAGA--ATAG-AAACAAAGT---GGATCGATAGTTGAAA-AAGTGAAAGT-TGTAGTAGAAGATG----AAAGTTGCCAAGATGTCtcaactgcttttttttttaaaacattttttttattttgcagattctattttcttacataaaataataggaaataa
gi|6 : TT-T-T-ATTCACATCAAATATTTACAAAGTTTTGCAT------------------GTATAATTTACAATACTG-ACATAACA------------G-------A-A-----TA--CACA----C------ATACTATTA--CAC----ATAC-TATT---AC----A-----C--------------ACAT---AT--TT-----AT-----AAT---------------------AAGGTT----TGTTTGTCCGAG--TTATGC-TTTCTATAATATAAGACTACTCACAAATCGATAGTA--------A---TAT--TCATGTATAGT-AAA-CCTA-AATATAGATGTCACTA-AGGTTACAAAACTTAAGTA------TGTATTTGATGC-----GAA--CAA---ATATTTT-------AATTACAGGAGGCTAGCTGAGAGATGTTTAGA--ATAGAAAACAAAGA---AGATCGATAG-TGAAA-ATAAGGAAGT-TGTAGTAGAAGTTG----AAAA
gi|7 : g-------TT--TTT-------AAAGTA----TGTTTTTCGGAA--CTATGC-TTTCTATAATATAATTATATTTACATATCGTTAGTA--------ATATTAT--TCATTAAAAGTAAAA-CCTGT-ATAAAAGTGTCCATA-AAGTTACAAAACTAAAGTA------TTTATTTGGTGC-----CAA--C-AAC-TTCTTTT-------ATC-ATAGTAGGATAGTTTAGCTATACTTA
gi|8 : ataatgtttagcagatatttcatatgaaatagtattaaatacattgatttagttataattatatattttttctcaataaaatgttttcattaacattaaacattctcTAAATGTCTCCA-------CAAAACTAAAATA----------------GT-----AAA---------TCTATT-------A-CTA--GGAGAATAA--TAGAAATGATTAGA--AGAG-AAACAAAGA---TGATCGATAGTTCAAA-AG--AAAAATATGTA-TAGAAAATGAAAAAAAAATGCCATAATGTCtattgataatggaaccaa
gi|9 : AA--TTATGC-TTTTTATGAT-TAAGGCTATTCGCATATCGTTAGTT--------A---TAT--TCACTAATAGT-AAA-TCTATAATATAGATGTCCCTT-AAGCTGCAAAACTTAAGGA------TTTATTTGTTTC-----AAA--C-A---TTTTTTT-------AACTATAGGAG------------ATGTTTAGA--ACAG-ACACAGAGA---GGATCGACAG-TGACA-AAGTGAAAGT-TGTAGT---TGATG----AAAATTGCCAAGATGTCtcagttaggtttttatttatttatttatttattttttttttggaaaatattattaattttctaacacaacatattagaaaataaaagttgcccatttcggtaatgcatttctaactcgttcttaatgagcgatgtgttttgcaactttaattgttttatttaaata
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): GAAAATAAAAAGCGCCTATTTCTGGTTAAGAATTTCTAACTTATCTTTATAAAGAGCGATGTGTTTTTTCAATTCTAATGCTTTTATTCAAATAAGTTTTGAACACATTTAAACATGGGGTTGTATTACTATACTTGTTTCTGAAGATACGATATTTACCACGTATTATAATAACATTCATAAGCGCAATTTTTA
Unaligned ( gi|18 ): AACTAAAATATTTTTATTTTGAAGATATGAATTTCTAACTGATCTTTGTAAACAACGATGTGTTTTTCGATTTCAGTTCTTTTATTTAAAAGTTT
Unaligned ( gi|20 ): TTTAAAAGGTTTGTACGATTGACACCTATGAATAAATAAT
Alignments
lowQualScore : 222222222222222222 44444444444444444444444444444444 11111111111 1111 111111111 22222222222222 11111 11111 33333333333 1111111 111111111111 1111111 1111111 222222222 11111111111 1 1111
lowQualScore : 4 4 4 4 4 666666666666666666 4 4 5 33333333333333333333333333333333 66 77777777777 9999 66 5555 55 777 222222222 33333333333333 777 666 11111 11111 22222222222 3333333 99999 2 44 3 1 0 3 222222222222 44 33 3 3 0 7777777 5555555 99999 000000000 0 22222222222 1 55 4 3 777 3 4 4 4 1 2222 1
lowQualScore : . . . . . .................. . . . ................................ .. ........... .... .. .... .. ... ......... .............. ... ... ..... ..... ........... ....... ..... . .. . . . . ............ .. .. . . . ....... ....... ..... ......... . ........... . .. . . ... . . . . . .... .
lowQualScore : 4 0 0 0 6 888888888888888888 5 0 7 44444444444444444444444444444444 11 66666666666 4444 11 6666 33 888 777777777 55555555555555 000 555 11111 11111 33333333333 0000000 77777 8 66 3 2 3 2 000000000000 66 77 6 6 8 8888888 3333333 11111 222222222 6 00000000000 6 00 5 6 000 2 1 0 0 6 5555 1
consensus : TTTCAATAATATG-TTT-T-T-ATTCACATCAAACATTTACAAAGTTTTGCAT------------------GTATAATTTACAGCANTG-ACATAATATTTT---AT---G-------ATA-----CA--CATA----C------ACAC----A--CAC----ATAC-TATT---AC----AA---TC--------------ATAT---AT--NT-----AT-----CAT-------TT--TTT-------AAGGTA----TGTTTTTCGGAA--TTATGC-TTTCTATAATATAAGGCTATTCACATATCGCTAGTA--------A---TAT--TCATTNATAGT-AAA-CCTATAATATAGATGTCCCTA-AAGTTACAAAACTAAAGTA------TTTATTTGATGC-----AAA--C-A---TTTTTTT-------AACTATAGGAGGATAGCTTAGAGATGTTTAGA--ANAG-AAACAAAGA---GGATCGATAGTTGAAA-AAGTGAAAGT-TGTAGTAGAAGATG----AAAATTGCCAAGATGTC
Reference ( family-6423 ) : TTTCAATAATATG-TTT-T-T-ATTCACATCAAACATTTACAAAGTTTTGCAT------------------GTATAATTTACAGCANTG-ACATAATATTTT---AT---G-------ATA-----CA--CATA----C------ACAC----A--CAC----ATAC-TATT---AC----AA---TC--------------ATAT---AT--NT-----AT-----CAT-------TT--TTT-------AAGGTA----TGTTTTTCGGAA--TTATGC-TTTCTATAATATAAGGCTATTCACATATCGCTAGTA--------A---TAT--TCATTNATAGT-AAA-CCTATAATATAGATGTCCCTA-AAGTTACAAAACTAAAGTA------TTTATTTGATGC-----AAA--C-A---TTTTTTT-------AACTATAGGAGGATAGCTTAGAGATGTTTAGA--ANAG-AAACAAAGA---GGATCGATAGTTGAAA-AAGTGAAAGT-TGTAGTAGAAGATG----AAAATTGCCAAGATGTC
gi|1 : CATTAATACGGTCTGT-T-ATCCATATCAAATATTTACACAG----GTAT------------------GTATGATTTACAACAATGGAC----TATTTT----T---GGTAAAACATA-----CA--CATA----C------ACAT----AAACAC----ATAC-AGAT---AC----AA---TC--------------ATATTGAAT--TT-----CT-----TAT-------TTGGTTC-------AAGA-A----CGAGTTTCGGAA--TTATGC-TTTTTATA-----AGGCTATCTTCATATTGCCACAA--------C---TAT--TCATTGAT-GT---------TAATAT---TGT---------TTA-----------TA------TTGTTTTAATGC-----GTA--C-A---CTTTTTTCCAAGAAAAC-GTAGGAGGATAGCTCAATAATGGTTAGA--AAAG-AAACCAAGA---TGACCGGTAATT-AAA-ATGAGAAAAG-TGTAGTAGAAGATA----AAAAATGTCAAGATG
gi|10 : tttataaaatcatgtacttgacttgaatgtttttttccAAGCTATTTACATATCGCTGGTA--------C---AAT--TCATTTATGGT-AAAACTTA-AATATTGATGTCTCTA-------CAAAACTAAAATA------GTTGTTTGATGCGGACAAAA--A-A---GTACTGT-------GATAATAGGCGAATAGCTAAGGAATGTTCAGA--A-AG-GAACCAAGA---GGATCGATAATTAAAATAAATGAAAGT-TGTAGTAGAA--------AAA--TGCCAAGATGTCaataataacttatcttaattaacagcgaagctttttttttaatttcaattattttattcaaatacgttacgaacacatttaaacatgtagctgtgtttactcgcttctgaagataaagtatttattatttataataataaaattgattagagcattttgtaa
gi|11 : TCCAATAATATA-TTT-T-T-ATCCACATCAAATACTTACAAAGTTTTGCAT------------------GTGCAATTTACAGCACTG-ACATA----TTT---AA---G-------ATAGAATTCA--CATA----CATGTTTATAC----A--CAC----ATAT-AATT---AC----AA---TC--------------ATAT---ATAAAT-----ATATAAATATATATATATA--TTT-------AAGGTT----TGTTTGTAGAAA--TTATGCAAATCTATAATATAAAACTGTTAACATATCGCTATTA--------tcggctgggttctatttaaaat
gi|12 : tta--------------ATAT---AT--AT-----AT-----CATTTAA---TT--CTT-------AAGGTA----TGTTTTTCGGAA--TTATGC-TTTCTATAATATAAGGCTATTTACATATCACTAGTA--------A---TTG--TCATAATTAGT-AAA-CATATAATATAGATGTCCCTA-AAGTTACAAAACTAAAGTA------TTTAGTTGATGC-----AAAAGC-A-----TTTTT-------AATTATAGGATGATAGCTTAGAGATGTTTAGA--AAAG-AAA
gi|14 : tatatatTCAATAATATG-TTT-TTT-ATTCACCTCAAACTTTTACACAGATTTGCAT------------------GAATAGTTTACAGCATTT-ACATA----TTT---AA---G-------ATA-----GA--AA-A----C------ACAC----A--TACCGGTATA--TATTTACAC----AC---AC--------------ATAT---AC--TTATACAAT-----CATAC-----TG--TTT-------AAAGTT----TGTTTTT-GCAA--ATATGA-TTT-----ATATAAGGCTATTCACATATga
gi|15 : tttttttgATAATTTG-TTT-T-T-ATTCACCTCAAACATTTACAAAGATTTGCAT------------------GTACGATTTACAGCAATG-AC---ATATTTT---ATATAG-------A-A-----CA--CATA----C------ATAT----G--TCC----ATATATATC---ACCAGTAATGTTC--------------ATAT---AT--
gi|15 : ATATATCACCAGTA--------A---TGT--TCATATATAGT-AAA-CCTATAATATAGATGTCTC-------TGCAAAACTAAAATATT----TTTATTTagtaaacctataatatagatgtctctgcaaaactaaaatatttttattttgaagatatgaattt
gi|16 : ataatttgtttttattcacctcaaacatttacaaagatttgcatgtacgatttacagcaatgacatattttatatagaacacatacatatgtccatACATCAAACATTTACAAAATTTTG--------------------------AT---CA--AAAG-GC-CAA-ATTTT---AT-----------ATA----------ATA----C------ACAC----A--TACCG--GTAC-TATT---AC----AA---TC--------------ATAC---AT--AT-----AT-----CAT-------TTCATTT-------AAAGTA----TGTTTTTAAGAA--TTATGC-TTTCTATAACATAAG--TACT----TATCGCTAGTA--------A---TTT--TCATTtgaagatatgaattt
gi|17 : tatgtctgatataTAGGAAGATAGCTTAAA-ATGTTTAGA--AAAG-AAAATAAGGCCTGGATCGATAATT-AAA-AAGTGAAAGT-TGTAGTA------G----AAAACTACCAAGATGa
gi|19 : taaaagTTCAATAATATG-TTT-T-T-ATTCACATAAAACATTTACAAAGTTGTGCAT------------------GTTTAATTTACAGCAATactcagttggattttgttttgaaaaactagtatttctaacattatctaaaaaaaaaaaaaggtgactaattc
gi|2 : AATAATATG-TTT-C-A-ATTCACATCAAACATTTACAAAG---TAAAT------------------ACATAATTTACAACACTA-ACATAGT
gi|2 : TTTTTCGGAA--TGATGC-TTTTTATA---TA--GCTATTCACACATCGCTAGTATCTTTCATA---TAT--ACAT--GTAGT-AAC-CCAATATTGTAGATGTCTCTACAAAATACA---CTAAAGTA---------ACTTAA-GT-----AA---------------T-------AA---TAAGAAGATGACTCAGAGATGTTTAGAGAAAAG-AAACAAAGA---AGGTCGTTAGA-GAAA-AAGTAAAAGT-TGTTGTAGAAGATG----AAAATTGCCAAGATGTCttagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgatataattatttttttatttcagttcttgtttgataccgtttgtctttttcggaatgatgctttttatatagctattcacacatcgctagtatctttcatatatacatgtagtaacccaatattgtagatgtctctacaaaatacactaaagtaacttaagtaataataagaagatgactcagagatgtttagagaaaagaaacaaagaaggtcgttagagaaaaagtaaaagttgttgtagaagatgaaaattgccaagatgtcttagttgggttttaaaaaaagtttattttgaggatactatttctgacaagacatataagaaaataaaaagcgcctatttctggttaagaatttctaacttatctttataaagagcgatgtgttttttcaattctaatgcttttattcaaat
gi|3 : aataatatgtttcaattcacatcaaacatttacaaagtaaatacataatttacaacactaacatagtttagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgatataattatttttttatttcagttcttgtttgataccgtttgtcTTTCAATTATATA-TTT-T-T-ATTCACATCATATATTTACAAGGTTTTGCAT------------------GTATAATTTACAGCA--G-ACATATTTTTTTTCTAT---GTA-----ATA-----CA--CACA----T------ATAC----A--CAC----ATAT-TATT---AC----AA---TCGTATATATATATATATAT---AT--AT-----AT-----CTT-------TT--TTTTTTTTTCAAGATAACTATGTTTTTCCGA---TTATGC-TTTCTATAATGTAAGGCTATTTACATATCGCTAGTA--------A---TATATCCATTAATAGT-AAA-CATATACTATAGATGTCCCTA-AAGTTACAAAACTTAAGTA------TTTATTTGATGC-----AAA--C-AAATTTTTTTT-------AATCATATGAGGATAGTTTAGAGATGTTT--A--ATTG-AATCAAAGA---GGGTCGATAG-TGAAA-AAGTAAAAGT-TGTAGTATAAGATGA---AAAATTACCAAGATGTCttagttgggttttaaaaaaagtttattttgaggatactatttctgacaagacatataagaaaataaaaagcgcctatttctggttaagaatttctaacttatctttataaagagcgatgtgttttttcaattctaatgcttttattcaaat
gi|4 : tTTTCAATAATATG-TTT-T-TTATTCACAGCAAACATTAACAAATTATTGCATGTATTGCAATTATTGCAAGTATAATTTACAGCAATG-ACATA---TTTT----T---G-------ATAGAACACAATCATAATTTT------ATAT----A--CAC----ATAC-TATT---A----------TC--------------ATA--------AC-----AT-----TGT-------TT--TTT-----------------TGTTT-----AAGTTTATGC-TTTTTA----A-AAGACTATTCAAATATCGCTCTTG--------A---TAT--TCATTTATAGT-AAA-CCTGTAATATAGATGTCTC-------TACAAAACTAAACTATTAAATTTTATTTGATCC-----AAA--C-A---TATTTTT-------AATAAAAGGAGGATAGCTTGGAAATGTTTAAA--ATAG-AAATGAGAA---GGTTCAATAG-TGAAA-AGATGAAAGT-TGTGGTAGAACATG----ATAATTGCCAAGATGTCtctgttgtttttttaaaatgtttatattgaatatattgttttctaacataacattagaaata
gi|5 : ttTTTCAAAAATATG-TTT-T-T-ATTTAGATCAAACATTTACAAAGTTTTGCAT------------------GTATAATTTACAGCACTG-GCATAATATTTT---AT---G-------ATA-----CA--CATA----T------ACAC----A--CAC----ATAC-TATT----C----AA---TC--------------ATAT---AT--TT-----AT-----CAT-------TT--TTT-------AAGGTA----TGTTTTTTGGAA--TTATGC-TTCCTATAACACAAGGCTATTTA-ATATCGCTAGTG--------A---TAT--TCATTACTAGT-AAA-CCTATAACATAGATGTCCCTA-AAATTACAAAACTAAAGTA------TTTATTTGATGC-----AAA--C-A---TTTTTTT-------AACTATAGCAGGATAGCTTAGAGATGTTAAGA--ATAG-AAACAAAGT---GGATCGATAGTTGAAA-AAGTGAAAGT-TGTAGTAGAAGATG----AAAGTTGCCAAGATGTCtcaactgcttttttttttaaaacattttttttattttgcagattctattttcttacataaaataataggaaataa
gi|6 : TT-T-T-ATTCACATCAAATATTTACAAAGTTTTGCAT------------------GTATAATTTACAATACTG-ACATAACA------------G-------A-A-----TA--CACA----C------ATACTATTA--CAC----ATAC-TATT---AC----A-----C--------------ACAT---AT--TT-----AT-----AAT---------------------AAGGTT----TGTTTGTCCGAG--TTATGC-TTTCTATAATATAAGACTACTCACAAATCGATAGTA--------A---TAT--TCATGTATAGT-AAA-CCTA-AATATAGATGTCACTA-AGGTTACAAAACTTAAGTA------TGTATTTGATGC-----GAA--CAA---ATATTTT-------AATTACAGGAGGCTAGCTGAGAGATGTTTAGA--ATAGAAAACAAAGA---AGATCGATAG-TGAAA-ATAAGGAAGT-TGTAGTAGAAGTTG----AAAA
gi|7 : g-------TT--TTT-------AAAGTA----TGTTTTTCGGAA--CTATGC-TTTCTATAATATAATTATATTTACATATCGTTAGTA--------ATATTAT--TCATTAAAAGTAAAA-CCTGT-ATAAAAGTGTCCATA-AAGTTACAAAACTAAAGTA------TTTATTTGGTGC-----CAA--C-AAC-TTCTTTT-------ATC-ATAGTAGGATAGTTTAGCTATACTTA
gi|8 : ataatgtttagcagatatttcatatgaaatagtattaaatacattgatttagttataattatatattttttctcaataaaatgttttcattaacattaaacattctcTAAATGTCTCCA-------CAAAACTAAAATA----------------GT-----AAA---------TCTATT-------A-CTA--GGAGAATAA--TAGAAATGATTAGA--AGAG-AAACAAAGA---TGATCGATAGTTCAAA-AG--AAAAATATGTA-TAGAAAATGAAAAAAAAATGCCATAATGTCtattgataatggaaccaa
gi|9 : AA--TTATGC-TTTTTATGAT-TAAGGCTATTCGCATATCGTTAGTT--------A---TAT--TCACTAATAGT-AAA-TCTATAATATAGATGTCCCTT-AAGCTGCAAAACTTAAGGA------TTTATTTGTTTC-----AAA--C-A---TTTTTTT-------AACTATAG------------GAGATGTTTAGA--ACAG-ACACAGAGA---GGATCGACAG-TGACA-AAGTGAAAGT-TGTAGT---TGATG----AAAATTGCCAAGATGTCtcagttaggtttttatttatttatttatttattttttttttggaaaatattattaattttctaacacaacatattagaaaataaaagttgcccatttcggtaatgcatttctaactcgttcttaatgagcgatgtgttttgcaactttaattgttttatttaaata
blockSeqs : . . T T T GTATTGCAATTATTGCAA C . A TTTTTTTTCTATGTAATAC AT CATGTTT TATT . CGGT TA TAC CAGTAATGT GTATATATATATAT . AAA ATACA ATAAA ATATATATA TTTTTTC AACTA A GT A A T TCTTTCATA AT TT A A TACAAAA TTAAATT GGACA CAAATT GATA A GA A A CCT T A T A G AAAA C
blockSeqs : . . . . A . T . A ATATTTTATATAGAAC . ATTTT . . CG T . AA . . A . . TTAATT . T C . . A A ATAT . AA . . TAAAGT TTT . CAACT AATT G . A . . T G . . G A T
blockSeqs : . . . . A . A . A TTTAAGATAGAATTC . C . . . C . AC . . T . . ACTG . A A . . A T C . AT . . TAAAGT G . AGCA AATC G . A . . A G . . C . T
blockSeqs : . . . . T . A . A TTTTTGATAGAACAC . C . . . T . AA . . A . . TTCA . T C . . A C A . TA . . TAAAAT T . CAAA AATA G . T . . T G . . G . T
blockSeqs : . . . . T . A . A ATATTTTATGATAC . C . . . C . AA . . A . . TT . A C . . A C A . TT . . TAAGGT T . AAG AACT A . T . . T G . . G . T
blockSeqs : . . . . T . C . A AATTTTATATA . T . . . C . AA . . A . . TT . A T . . A T A . TA . . TAAAGT T . CAT AATT G . T . . . G . . A . A
blockSeqs : . . . . T . A . A TTTAAGATAG . T . . . C . A . . T . . TT . T C . . A C A . GT . . TTAAGC T . CAT AACT G . T . . . C . . G . T
blockSeqs : . . . . T . C . . ACAGAAT . C . . . . . . . . T . . TT . A C . . A T A . TA . . TA T . CAT ATC T . G . . . G . . . . .
blockSeqs : . . . T . C . . . . . . . . . . A C A . TA . . CA T . . ACT A . C . . . . . . . .
blockSeqs : . . . . . . . T A . . . . . . . . AA G . . .
blockSeqs : . . . C A . . . .
blockSeqs : .
blockSeqCons : AATTTTANATAGAAC***************** ** *** TT********* TAAAGT* AATT*******
originalCons : TTTCAATAATATG-TTT-T-T-ATTCACATCAAACATTTACAAAGTTTTGCAT------------------GTATAATTTACAGCANTG-ACATAATATTTT---AT---G-------ATA-----CA--CATA----C------ACAC----A--CAC----ATAC-TATT---AC----AA---TC--------------ATAT---AT--NT-----AT-----CAT-------TT--TTT-------AAGGTA----TGTTTTTCGGAA--TTATGC-TTTCTATAATATAAGGCTATTCACATATCGCTAGTA--------A---TAT--TCATTNATAGT-AAA-CCTATAATATAGATGTCCCTA-AAGTTACAAAACTAAAGTA------TTTATTTGATGC-----AAA--C-A---TTTTTTT-------AACTATAGGAGGATAGCTTAGAGATGTTTAGA--ANAG-AAACAAAGA---GGATCGATAGTTGAAA-AAGTGAAAGT-TGTAGTAGAAGATG----AAAATTGCCAAGATGTC
finalCons : TTTCAATAATATG-TTT-T-T-ATTCACATCAAACATTTACAAAGTTTTGCAT------------------GTATAATTTACAGCANTG-ACATAAATTTTANATAGAAC-----------------A--CATA----C------ACAC----A--CAC----ATAC-TATT---AC----AA---TC--------------ATAT---AT--NT-----AT-----CATTT---------TTT-------AAGGTA----TGTTTTTCGGAA--TTATGC-TTTCTATAATATAAGGCTATTCACATATCGCTAGTA--------A---TAT--TCATTNATAGT-AAA-CCTATAATATAGATGTCCCTAAAGT-TACAAAACTAAAGTA------TTTATTTGATGC-----AAA--C-A---TTTTTTTAATT-------ATAGGAGGATAGCTTAGAGATGTTTAGA--ANAG-AAACAAAGA---GGATCGATAGTTGAAA-AAGTGAAAGT-TGTAGTAGAAGATG----AAAATTGCCAAGATGTC
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): GAAAATAAAAAGCGCCTATTTCTGGTTAAGAATTTCTAACTTATCTTTATAAAGAGCGATGTGTTTTTTCAATTCTAATGCTTTTATTCAAATAAGTTTTGAACACATTTAAACATGGGGTTGTATTACTATACTTGTTTCTGAAGATACGATATTTACCACGTATTATAATAACATTCATAAGCGCAATTTTTA
Unaligned ( gi|18 ): AACTAAAATATTTTTATTTTGAAGATATGAATTTCTAACTGATCTTTGTAAACAACGATGTGTTTTTCGATTTCAGTTCTTTTATTTAAAAGTTT
Unaligned ( gi|20 ): TTTAAAAGGTTTGTACGATTGACACCTATGAATAAATAAT
Alignments
lowQualScore : 11111111111 22222222222222222222222 2222 1111111 1111111 2222222222222222222222222 333333333333333333333333333333333333333333333333333333333333333333333333 111111111111 2222222 1111111 22222222222 111111 1 1111
lowQualScore : 4 3 3 3 66666666666 77777777777777777777777 3 4 4 1 6666 2222222 4 55 8888 8888 8888 2222222 9999999 55 44 777 1111111111111111111111111 666 555555555555555555555555555555555555555555555555555555555555555555555555 55 2 44 3 3 222222222222 44 33 7 0 1111111 5555555 99999 11111111111 000000 2 3 1 55 4 3 777 3 4 4 4 1 2222 1
lowQualScore : . . . . ........... ....................... . . . . .... ....... . .. .... .... .... ....... ....... .. .. ... ......................... ... ........................................................................ .. . .. . . ............ .. .. . . ....... ....... ..... ........... ...... . . . .. . . ... . . . . . .... .
lowQualScore : 0 6 6 6 11111111111 77777777777777777777777 6 5 0 8 6666 8888888 0 55 5555 5555 5555 2222222 9999999 55 99 000 5555555555555555555555555 444 777777777777777777777777777777777777777777777777777777777777777777777777 00 8 66 3 2 000000000000 66 77 3 8 8888888 3333333 11111 55555555555 555555 2 3 6 00 5 6 000 2 1 0 0 6 5555 1
consensus : TTTCAATAATATG-TTT-T-T-ATTCACATCAAACATTTACAAAGT----------TTTGCA----T------------------G-TATAATTTACAGCANTG-ACATA--ATTTT----ANATAGA-A--CA----CA----TA----CAT------AC----A--CAC--ATAC-TATT---AC----AA---TC--------------ATAT---ATN------------T-----AT-CAT----TT--TTT-------A----AG---------------GTA----TGT--TTTTCGGAA--TTATGCTT-TCTATAATATAAGGCTATTCACATATCGCTAGTA--------A---TAT--TCATTNATAGT-AAACCTATAATATAGATGTCCCTA-AAGTTACAAAACTAAAGTA------TTTATTTGATGC-----AAA--C-A---TTTTTTT------AATNA-TAGGAGGATAGCTTAGAGATGTTTAGA--ANAG-AAACAAAGA---GGATCGATAGTTGAAA-AAGTGAAAGT-TGTAGTAGAAGATG----AAAATTGCCAAGATGTC
Reference ( family-6423 ) : TTTCAATAATATG-TTT-T-T-ATTCACATCAAACATTTACAAAGT----------TTTGCA----T------------------G-TATAATTTACAGCANTG-ACATAA-ATTTT----ANATAGA-A--CA----CA----TA----CAC------AC----A--CAC--ATAC-TATT---AC----AA---TC--------------ATAT---ATN------------T-----AT-CAT----TT--TTT-------A----AG---------------GTA----TGT--TTTTCGGAA--TTATGCTT-TCTATAATATAAGGCTATTCACATATCGCTAGTA--------A---TAT--TCATTNATAGT-AAACCTATAATATAGATGTCCCTA-AAGTTACAAAACTAAAGTA------TTTATTTGATGC-----AAA--C-A---TTTTTTT------AATTA-TAGGAGGATAGCTTAGAGATGTTTAGA--ANAG-AAACAAAGA---GGATCGATAGTTGAAA-AAGTGAAAGT-TGTAGTAGAAGATG----AAAATTGCCAAGATGTC
gi|1 : CATTAATACGGTCTGT-T-ATCCATATCAAATATTTACACAG--------------GTA----T------------------G-TATGATTTACAACAATGGAC-TA---TTTT----TGGTAAA-A--CATACACA----TA----CAC------AT----AAACAC--ATAC-AGAT---AC----AA---TC--------------ATATTGAATT------------T-----CT-TAT----TTGGTTC-------A----AG---------------A-A----CGA--GTTTCGGAA--TTATGCTT-TT-----TATAAGGCTATCTTCATATTGCCACAA--------C---TAT--TCATTGAT-GT--------TAATAT---TGT---------TTA-----------TA------TTGTTTTAATGC-----GTA--C-A---CTTTTTTCCAAGAAAACG-TAGGAGGATAGCTCAATAATGGTTAGA--AAAG-AAACCAAGA---TGACCGGTAATT-AAA-ATGAGAAAAG-TGTAGTAGAAGATA----AAAAATGTCAAGATG
gi|10 : tttataaaatcatgtacttgacttgaatgtttttttccAAGCTATTTACATATCGCTGGTA--------C---AAT--TCATTTATGGTAAAACTTA-AATATTGATGTCTC-------TACAAAACTAAAATA------GTTGTTTGATGCGGACAAAA--A-A---GTACTGT------GATAA-TAGGCGAATAGCTAAGGAATGTTCAGA--A-AG-GAACCAAGA---GGATCGATAATTAAAATAAATGAAAGT-TGTAGTAGAA--------AAA--TGCCAAGATGTCaataataacttatcttaattaacagcgaagctttttttttaatttcaattattttattcaaatacgttacgaacacatttaaacatgtagctgtgtttactcgcttctgaagataaagtatttattatttataataataaaattgattagagcattttgtaa
gi|11 : TCCAATAATATA-TTT-T-T-ATCCACATCAAATACTTACAAAGT----------TTTGCA----T------------------G-TGCAATTTACAGCACTG-ACATA---TTTA----AGATAGA-ATTCA----CA----TA----CATGTTTATAC----A--CAC--ATAT-AATT---AC----AA---TC--------------ATAT---ATAAATATATAAATAT-----ATATAT----ATA-TTT-------A----AG---------------GTT----TGT--TTGTAGAAA--TTATGCAAATCTATAATATAAAACTGTTAACATATCGCTATTA--------tcggctgggttctatttaaaat
gi|12 : tta--------------ATAT---ATA------------T-----AT-CATTTAATT--CTT-------A----AG---------------GTA----TGT--TTTTCGGAA--TTATGCTT-TCTATAATATAAGGCTATTTACATATCACTAGTA--------A---TTG--TCATAATTAGT-AAACATATAATATAGATGTCCCTA-AAGTTACAAAACTAAAGTA------TTTAGTTGATGC-----AAAAGC-A-----TTTTT------AATTA-TAGGATGATAGCTTAGAGATGTTTAGA--AAAG-AAA
gi|14 : tatatatTCAATAATATG-TTT-TTT-ATTCACCTCAAACTTTTACACAGA----------TTTGCA----T------------------G-AATAGTTTACAGCATTT-ACAT---ATTTA----AGATAGA-A--AA----CA----CA----CAT------AC----C--GGT--ATA--TATTTACAC----AC---AC--------------ATAT---ACT------------TATACAAT-CATAC--TG--TTT-------A----AA---------------GTT----TGT--TTTT-GCAA--ATATGATT-T-----ATATAAGGCTATTCACATATga
gi|15 : tttttttgATAATTTG-TTT-T-T-ATTCACCTCAAACATTTACAAAGA----------TTTGCA----T------------------G-TACGATTTACAGCAATG-ACAT---ATTTT----ATATAGA-A--CA----CA----TA----CAT------AT----G--TCC--ATATATATC---ACCAGTAATGTTC--------------ATAT---AT
gi|15 : ATATATCACCAGTA--------A---TGT--TCATATATAGT-AAACCTATAATATAGATGTCTC-------TGCAAAACTAAAATATT----TTTATTTagtaaacctataatatagatgtctctgcaaaactaaaatatttttattttgaagatatgaattt
gi|16 : ataatttgtttttattcacctcaaacatttacaaagatttgcatgtacgatttacagcaatgacatattttatatagaacacatacatatgtccatACATCAAACATTTACAAAAT----------TTTG-------------------------------AT---CA--AAAG-GC-CAA-ATTTT----ATATA-------------A----TA----CAC------AC----A--TACCGGTAC-TATT---AC----AA---TC--------------ATAC---ATA------------T-----AT-CAT----TTCATTT-------A----AA---------------GTA----TGT--TTTTAAGAA--TTATGCTT-TCTATAACATAAG--TACT----TATCGCTAGTA--------A---TTT--TCATTtgaagatatgaattt
gi|17 : tatgtctgatata-TAGGAAGATAGCTTAAA-ATGTTTAGA--AAAG-AAAATAAGGCCTGGATCGATAATT-AAA-AAGTGAAAGT-TGTAGTA------G----AAAACTACCAAGATGa
gi|19 : taaaagTTCAATAATATG-TTT-T-T-ATTCACATAAAACATTTACAAAGT----------TGTGCA----T------------------G-TTTAATTTACAGCAATactcagttggattttgttttgaaaaactagtatttctaacattatctaaaaaaaaaaaaaggtgactaattc
gi|2 : AATAATATG-TTT-C-A-ATTCACATCAAACATTTACAAAGTAAATACATAATTTACAACACT------------------AACATAGTTTAGANNNNNN-NNNNNN-NNNNN----NNNNNNN-N--NN----NN----NN----NNN------NN----N--NNN--NNNN-NNNN---NN----NN---TG--------------ATAT---AAT------------T-----AT---T----TT--TTT-------ATTTCAGTTCTTGTTTGATACCGTT----TGTCTTTTTCGGAA--TGATGCTT-TTTATA---TA--GCTATTCACACATCGCTAGTATCTTTCATA---TAT--ACAT--GTAGT-AACCCAATATTGTAGATGTCTCTACAAAATACA---CTAAAGTA---------ACTTAA-G-----------------------T------AATAA-TAAGAAGATGACTCAGAGATGTTTAGAGAAAAG-AAACAAAGA---AGGTCGTTAGA-GAAA-AAGTAAAAGT-TGTTGTAGAAGATG----AAAATTGCCAAGATGTC
gi|3 : TTTCAATTATATA-TTT-T-T-ATTCACATCATATATTTACAAGGT----------TTTGCA----T------------------G-TATAATTTACAGCA--G-ACATAT-TTTTTTTCTATGTAAT-A--CA----CA----CA----TAT------AC----A--CAC--ATAT-TATT---AC----AA---TCGTATATATATATATATAT---ATA------------T-----AT-CTT----TT--TTTTTTTTTCA----AG---------------ATAACTATGT--TTTTCCGA---TTATGCTT-TCTATAATGTAAGGCTATTTACATATCGCTAGTA--------A---TATATCCATTAATAGT-AAACATATACTATAGATGTCCCTA-AAGTTACAAAACTTAAGTA------TTTATTTGATGC-----AAA--C-AAATTTTTTTT------AATCA-TATGAGGATAGTTTAGAGATGTTT--A--ATTG-AATCAAAGA---GGGTCGATAG-TGAAA-AAGTAAAAGT-TGTAGTATAAGATGA---AAAATTACCAAGATGTCttagttgggttttaaaaaaagtttattttgaggatactatttctgacaagacatataagaaaataaaaagcgcctatttctggttaagaatttctaacttatctttataaagagcgatgtgttttttcaattctaatgcttttattcaaat
gi|4 : tTTTCAATAATATG-TTT-T-TTATTCACAGCAAACATTAACAAATT----------ATTGCA----TGTATTGCAATTATTGCAAG-TATAATTTACAGCAATG-ACATA---TTTT----TGATAGA-A--CA----CAATCATAATTTTAT------AT----A--CAC--ATAC-TATT---A----------TC--------------ATA------A------------C-----AT-TGT----TT--TTT------------------------------------TGT--TT-----AAGTTTATGCTT-TTTA----A-AAGACTATTCAAATATCGCTCTTG--------A---TAT--TCATTTATAGT-AAACCTGTAATATAGATGTCTC-------TACAAAACTAAACTATTAAATTTTATTTGATCC-----AAA--C-A---TATTTTT------AATAA-AAGGAGGATAGCTTGGAAATGTTTAAA--ATAG-AAATGAGAA---GGTTCAATAG-TGAAA-AGATGAAAGT-TGTGGTAGAACATG----ATAATTGCCAAGATGTCtctgttgtttttttaaaatgtttatattgaatatattgttttctaacataacattagaaata
gi|5 : ttTTTCAAAAATATG-TTT-T-T-ATTTAGATCAAACATTTACAAAGT----------TTTGCA----T------------------G-TATAATTTACAGCACTG-GCATAATATTTT----AT---GATA--CA----CA----TA----TAC------AC----A--CAC--ATAC-TATT----C----AA---TC--------------ATAT---ATT------------T-----AT-CAT----TT--TTT-------A----AG---------------GTA----TGT--TTTTTGGAA--TTATGCTT-CCTATAACACAAGGCTATTTA-ATATCGCTAGTG--------A---TAT--TCATTACTAGT-AAACCTATAACATAGATGTCCCTA-AAATTACAAAACTAAAGTA------TTTATTTGATGC-----AAA--C-A---TTTTTTT------AACTA-TAGCAGGATAGCTTAGAGATGTTAAGA--ATAG-AAACAAAGT---GGATCGATAGTTGAAA-AAGTGAAAGT-TGTAGTAGAAGATG----AAAGTTGCCAAGATGTCtcaactgcttttttttttaaaacattttttttattttgcagattctattttcttacataaaataataggaaataa
gi|6 : TT-T-T-ATTCACATCAAATATTTACAAAGT----------TTTGCA----T------------------G-TATAATTTACAATACTG-ACATAA-------------CAGA-A--TA----CA----CA----CAT------ACTATTA--CAC--ATAC-TATT---AC----A-----C--------------ACAT---ATT------------T-----AT-AAT------------------A----AG---------------GTT----TGT--TTGTCCGAG--TTATGCTT-TCTATAATATAAGACTACTCACAAATCGATAGTA--------A---TAT--TCATGTATAGT-AAACCTA-AATATAGATGTCACTA-AGGTTACAAAACTTAAGTA------TGTATTTGATGC-----GAA--CAA---ATATTTT------AATTA-CAGGAGGCTAGCTGAGAGATGTTTAGA--ATAGAAAACAAAGA---AGATCGATAG-TGAAA-ATAAGGAAGT-TGTAGTAGAAGTTG----AAAA
gi|7 : gTCTCAATAAAATG-TTT-T-C-ATTAACATTAAACATT
gi|7 : ataatgtttagcagatatttcatatgaaatagtattaaatacattgatttagttataattatatattttt----TT--TTT-------A----AA---------------GTA----TGT--TTTTCGGAA--CTATGCTT-TCTATAATATAATTATATTTACATATCGTTAGTA--------ATATTAT--TCATTAAAAGTAAAACCTGT-ATAAAAGTGTCCATA-AAGTTACAAAACTAAAGTA------TTTATTTGGTGC-----CAA--C-AAC-TTCTTTT-------ATCA-TAGTAGGATAGTTTAGCTATACTTActctttttaaagtatgtttttcggaactatgctttctataatataattatatttacatatcgttagtaatattattcattaaaagtaaaacctgtataaaagtgtccataaagttacaaaactaaagtatttatttggtgccaacaacttcttttatcatagtaggatagtttagctatacttatattgataatggaaccaa
gi|8 : ataatgtttagcagatatttcatatgaaatagtattaaatacattgatttagttataattatatattttttctcaataaaatgttttcattaacattaaacattctcTAAATGTCTCCA-------CAAAACTAAAATA----------------GT-----AAA------------TCT------A-TTACTAGGAGAATAA--TAGAAATGATTAGA--AGAG-AAACAAAGA---TGATCGATAGTTCAAA-AG--AAAAATATGTA-TAGAAAATGAAAAAAAAATGCCATAATGTCtattgataatggaaccaa
gi|9 : AA--TTATGCTT-TTTATGAT-TAAGGCTATTCGCATATCGTTAGTT--------A---TAT--TCACTAATAGT-AAATCTATAATATAGATGTCCCTT-AAGCTGCAAAACTTAAGGA------TTTATTTGTTTC-----AAA--C-A---TTTTTTT------AACTA-TAG------------GAGATGTTTAGA--ACAG-ACACAGAGA---GGATCGACAG-TGACA-AAGTGAAAGT-TGTAGT---TGATG----AAAATTGCCAAGATGTCtcagttaggtttttatttatttatttatttattttttttttggaaaatattattaattttctaacacaacatattagaaaataaaagttgcccatttcggtaatgcatttctaactcgttcttaatgagcgatgtgttttgcaactttaattgttttatttaaata
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): GAAAATAAAAAGCGCCTATTTCTGGTTAAGAATTTCTAACTTATCTTTATAAAGAGCGATGTGTTTTTTCAATTCTAATGCTTTTATTCAAATAAGTTTTGAACACATTTAAACATGGGGTTGTATTACTATACTTGTTTCTGAAGATACGATATTTACCACGTATTATAATAACATTCATAAGCGCAATTTTTA
Unaligned ( gi|18 ): AACTAAAATATTTTTATTTTGAAGATATGAATTTCTAACTGATCTTTGTAAACAACGATGTGTTTTTCGATTTCAGTTCTTTTATTTAAAAGTTT
Unaligned ( gi|20 ): TTTAAAAGGTTTGTACGATTGACACCTATGAATAAATAAT