lowQualScore : 1111
lowQualScore : 55 2 0000 2 2 2 2 0 33 2 7 2
lowQualScore : .. . .... . . . . . .. . . .
lowQualScore : 00 9 0000 9 9 9 7 4 44 5 1 7
consensus : CTCAGAAATTTTCCCCAATAAA-NTTT-TTT----CAGTC-GGT-GC-TTTT-TTCGTGGGTCGGTCGCGCAA--GGGGAAAC-AAACACTATTTTT-ATTTAGGCC
Reference ( gi|3 ) : CTCAGAAATTTTCCCCAATAAA-TTTT-TTT----CAGTC-GGT-GC-TTTT-TTCGTGGGTCGGTCGCGCAA--GGGGAAAC-AAACACTATTTTT-ATTTAGGCC
gi|12 : CTTAGAAATTTTCCCCAATATA-ATTT-TTT----CAGTC-GTT-GC-TTTT-TTTGTGGGTCGGTCGCGCAA--GGGGAAAC-AAACACTATTTTT-ATTT
gi|13 : aacCTCAGAAATTTTTCACAATAAA-ACTT-TTT----CAGTC-GGT-GC-TTTT-TTCGTGGGTCAG-CGGGCAA--CAGGAAAC-AAACACTATTTTT-ATTTAGG
gi|14 : CTCAGAAATTTTC------AAA-TTTT-TTTTATTCAGTT-GGT-GC-TTTT-TTCGTGGGTTGGTCACGCAA--GGGGAAAC-AAACACTATTTTT-ATTT
gi|7 : aaCTCAGAAATTTCCCCCAATAAA-TTTTTTTT----CAGTT-GGT-GC-TTTT-TTCATTGGTCGGTCGCGCAA--GAGAAAAC-ACAGA-TATTTTT-AATTt
gi|8 : ccTCAGAAATTTTCCCCAATAAA-TTTT-TTT----CAGTT-GGT-GC-TTTT-TTCGTTGGTCGGTCGCGCAA--GGGGAAAC-AAACACTATTTTT-ATTTAGGCgt
gi|5 : aTCAGAAATTTTTTACAATAAA-TTTT-TTT----CAGTC-GGT-GC-TTTT-TTGGTGGGTCGGTCTGGCAA--GGGGAAAC-AAACACTATTTTT-ATTTAGGC
gi|4 : aCAGAAATTTTTCCCAATAAA-ATTT-TTT----CAGTC-GGT-GC-TTTT-TTCGTGGGTCGGTCGCGCAA--GGGGAAAC-AAACA-TATTTTTAATTTAGGCC
gi|15 : CAGAAATTTTCCCCACT-CA-TTTT-TTT----CAGTC-GGT-GCTTTTT-TTCGTGGGTCGGTCGCGCAA--GGGGAAAC-AAACACTATCTTT-ATTTAt
gi|10 : CAGAAATTTTTCCCAATAAA-ATTG-TTT----AAGTC-TGT-GC-TTTT-TTCGTGGGTTGGTTGCACAA--GGGGAAAC-AAACATTATTTTT-ATTTAAGCC
gi|16 : AGAAATTTTCCCGAATAAA-ATTT-TTT----CAGTC-GGT-GC-TTTT-TTCGTGGGTCGGTCACGCAA--GGGGAAAC-AAACAC
gi|11 : aatcaAAAAATTTTCTC-AATAAT-TTTT-TTT----CAGTC-AGT-GC-TTTT-TTCGTTGGTTGGTCGCGCAA--GGGGAAAC-AAACAATTTTTTA-ATTTAGGCC
gi|6 : gAAATTTTCCCCAATAAA-TTTT-TTTTT--CATTC-GTT-TT-TTTTTTTCGTGGGTCGGTCACGCAA--GGGGAAAC-AAACATT-TTTTT-ATTTAGGCCt
gi|2 : taTTTCAGCAATAAAATTTT-TTG----GGGTC-AG--GC-CGAT-TTTGAGGGTCGGTCGTGGGA--GGGGAAAC-AAAAAATATTTTA-ATTTAGG
gi|9 : aaatatcatttcggTTTCGGCAATAAA-ATAT-TTT----TGGTCTGGCCGA-TTTT-TT--TGGGTCGG------AAGTGGGAAAACAAAAAAATATTTTA-ATTTAGGCt
gi|18 : atataattttggT-TTCGTCGGTCGGTCG-GCAA--CTGGAAAC-AAACA--ATTTTT-
gi|1 : GGGTCGGTCGGGTAA--CCGGAAAC-AAACATCTTTTTT-TTTTAGGCcaatatggccca
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|17 ): ACAAAACTTAAGGGCCAGCAGGAAAAATTAGGGTCGTTCGGGTTACCTGAACCAGACATATTTTTTATTTAGCC
Unaligned ( gi|19 ): ATATCATTTCGGTTTCGGCAATAACTATTTTTGGGTTAGGCC
Alignments
lowQualScore : 1111
lowQualScore : 1 2222 2 2 2 2 2 33 2 6 2
lowQualScore : . .... . . . . . .. . . .
lowQualScore : 0 0000 7 7 7 7 5 22 4 1 5
consensus : CTCAGAAATTTTCCCCAATAAANTTTTTT----CAG-TC-GGT-GC-TTTT-TTCGTGGGTCGGTCGCGCAA--GGGGAAAC-AAACACTATTTTT-ATTTAGGCC
Reference ( family-624 ) : CTCAGAAATTTTCCCCAATAAANTTTTTT----CAG-TC-GGT-GC-TTTT-TTCGTGGGTCGGTCGCGCAA--GGGGAAAC-AAACACTATTTTT-ATTTAGGCC
gi|1 : GGGTCGGTCGGGTAA--CCGGAAAC-AAACATCTTTTTT-TTTTAGGC
gi|10 : atccgatgccgattttttggacataaaaacttttgagtcggcagttaaaatataCAGAAATTTTTCCCAATAAAATTGTTT----AAG-TC-TGT-GC-TTTT-TTCGTGGGTTGGTTGCACAA--GGGGAAAC-AAACATTATTTTT-ATTTAAGCC
gi|11 : AAAAATTTTCTC-AATAATTTTTTTT----CAG-TC-AGT-GC-TTTT-TTCGTTGGTTGGTCGCGCAA--GGGGAAAC-AAACAATTTTTTA-ATTTAGGCC
gi|12 : gCTTAGAAATTTTCCCCAATATAATTTTTT----CAG-TC-GTT-GC-TTTT-TTTGTGGGTCGGTCGCGCAA--GGGGAAAC-AAACACTATTTTT-ATTTt
gi|13 : aacCTCAGAAATTTTTCACAATAAAACTTTTT----CAG-TC-GGT-GC-TTTT-TTCGTGGGTCAG-CGGGCAA--CAGGAAAC-AAACACTATTTTT-ATTTAGG
gi|14 : CTCAGAAATTTTC------AAATTTTTTTTATTCAG-TT-GGT-GC-TTTT-TTCGTGGGTTGGTCACGCAA--GGGGAAAC-AAACACTATTTTT-ATTT
gi|15 : aaCAGAAATTTTCCCCACT-CATTTTTTT----CAG-TC-GGT-GCTTTTT-TTCGTGGGTCGGTCGCGCAA--GGGGAAAC-AAACACTATCTTT-ATTTAt
gi|16 : AGAAATTTTCCCGAATAAAATTTTTT----CAG-TC-GGT-GC-TTTT-TTCGTGGGTCGGTCACGCAA--GGGGAAAC-AAACAC
gi|18 : aatcaT-TTCGTCGGTCGGTCG-GCAA--CTGGAAAC-AAACA--ATTTTT-
gi|2 : TTTCAGCAATAAAATTTTTT----GGGGTC-AG--GC-CGAT-TTTGAGGGTCGGTCGTGGGA--GGGGAAAC-AAAAAATATTTTA-ATTTAGGcaatatggccca
gi|3 : aaatatcatttcggCTCAGAAATTTTCCCCAATAAATTTTTTT----CAG-TC-GGT-GC-TTTT-TTCGTGGGTCGGTCGCGCAA--GGGGAAAC-AAACACTATTTTT-ATTTAGGCCt
gi|4 : CAGAAATTTTTCCCAATAAAATTTTTT----CAG-TC-GGT-GC-TTTT-TTCGTGGGTCGGTCGCGCAA--GGGGAAAC-AAACA-TATTTTTAATTTAGGCC
gi|5 : TCAGAAATTTTTTACAATAAATTTTTTT----CAG-TC-GGT-GC-TTTT-TTGGTGGGTCGGTCTGGCAA--GGGGAAAC-AAACACTATTTTT-ATTTAGGCt
gi|6 : aAAATTTTCCCCAATAAATTTTTTTTT--CAT-TC-GTT-TT-TTTTTTTCGTGGGTCGGTCACGCAA--GGGGAAAC-AAACATT-TTTTT-ATTTAGGCC
gi|7 : taCTCAGAAATTTCCCCCAATAAATTTTTTTT---CAG-TT-GGT-GC-TTTT-TTCATTGGTCGGTCGCGCAA--GAGAAAAC-ACAGA-TATTTTT-AATT
gi|8 : ccTCAGAAATTTTCCCCAATAAATTTTTTT----CAG-TT-GGT-GC-TTTT-TTCGTTGGTCGGTCGCGCAA--GGGGAAAC-AAACACTATTTTT-ATTTAGGCgt
gi|9 : aTTTCGGCAATAAAATATTTT----TGG-TCTGGCCGA-TTTT-TT--TGGGTCGG------AAGTGGGAAAACAAAAAAATATTTTA-ATTTAGGC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): ACAAAACTTAAGGGCCAGCAGGAAAAATTAGGGTCGTTCGGGTTACCTGAACCAGACATATTTTTTATTTAGCC
Unaligned ( gi|19 ): ATATCATTTCGGTTTCGGCAATAACTATTTTTGGGTTAGGCC
Alignments
lowQualScore : 1111
lowQualScore : 1 2222 2 2 2 2 2 33 2 6 2
lowQualScore : . .... . . . . . .. . . .
lowQualScore : 0 0000 7 7 7 7 5 22 4 1 5
consensus : CTCAGAAATTTTCCCCAATAAANTTTTTT----CAG-TC-GGT-GC-TTTT-TTCGTGGGTCGGTCGCGCAA--GGGGAAAC-AAACACTATTTTT-ATTTAGGCC
Reference ( family-624 ) : CTCAGAAATTTTCCCCAATAAANTTTTTT----CAG-TC-GGT-GC-TTTT-TTCGTGGGTCGGTCGCGCAA--GGGGAAAC-AAACACTATTTTT-ATTTAGGCC
gi|1 : GGGTCGGTCGGGTAA--CCGGAAAC-AAACATCTTTTTT-TTTTAGGC
gi|10 : atccgatgccgattttttggacataaaaacttttgagtcggcagttaaaatataCAGAAATTTTTCCCAATAAAATTGTTT----AAG-TC-TGT-GC-TTTT-TTCGTGGGTTGGTTGCACAA--GGGGAAAC-AAACATTATTTTT-ATTTAAGCC
gi|11 : AAAAATTTTCTC-AATAATTTTTTTT----CAG-TC-AGT-GC-TTTT-TTCGTTGGTTGGTCGCGCAA--GGGGAAAC-AAACAATTTTTTA-ATTTAGGCC
gi|12 : gCTTAGAAATTTTCCCCAATATAATTTTTT----CAG-TC-GTT-GC-TTTT-TTTGTGGGTCGGTCGCGCAA--GGGGAAAC-AAACACTATTTTT-ATTTt
gi|13 : aacCTCAGAAATTTTTCACAATAAAACTTTTT----CAG-TC-GGT-GC-TTTT-TTCGTGGGTCAG-CGGGCAA--CAGGAAAC-AAACACTATTTTT-ATTTAGG
gi|14 : CTCAGAAATTTTC------AAATTTTTTTTATTCAG-TT-GGT-GC-TTTT-TTCGTGGGTTGGTCACGCAA--GGGGAAAC-AAACACTATTTTT-ATTT
gi|15 : aaCAGAAATTTTCCCCACT-CATTTTTTT----CAG-TC-GGT-GCTTTTT-TTCGTGGGTCGGTCGCGCAA--GGGGAAAC-AAACACTATCTTT-ATTTAt
gi|16 : AGAAATTTTCCCGAATAAAATTTTTT----CAG-TC-GGT-GC-TTTT-TTCGTGGGTCGGTCACGCAA--GGGGAAAC-AAACAC
gi|18 : aatcaT-TTCGTCGGTCGGTCG-GCAA--CTGGAAAC-AAACA--ATTTTT-
gi|2 : TTTCAGCAATAAAATTTTTT----GGGGTC-AG--GC-CGAT-TTTGAGGGTCGGTCGTGGGA--GGGGAAAC-AAAAAATATTTTA-ATTTAGGcaatatggccca
gi|3 : aaatatcatttcggCTCAGAAATTTTCCCCAATAAATTTTTTT----CAG-TC-GGT-GC-TTTT-TTCGTGGGTCGGTCGCGCAA--GGGGAAAC-AAACACTATTTTT-ATTTAGGCCt
gi|4 : CAGAAATTTTTCCCAATAAAATTTTTT----CAG-TC-GGT-GC-TTTT-TTCGTGGGTCGGTCGCGCAA--GGGGAAAC-AAACA-TATTTTTAATTTAGGCC
gi|5 : TCAGAAATTTTTTACAATAAATTTTTTT----CAG-TC-GGT-GC-TTTT-TTGGTGGGTCGGTCTGGCAA--GGGGAAAC-AAACACTATTTTT-ATTTAGGCt
gi|6 : aAAATTTTCCCCAATAAATTTTTTTTT--CAT-TC-GTT-TT-TTTTTTTCGTGGGTCGGTCACGCAA--GGGGAAAC-AAACATT-TTTTT-ATTTAGGCC
gi|7 : taCTCAGAAATTTCCCCCAATAAATTTTTTTT---CAG-TT-GGT-GC-TTTT-TTCATTGGTCGGTCGCGCAA--GAGAAAAC-ACAGA-TATTTTT-AATT
gi|8 : ccTCAGAAATTTTCCCCAATAAATTTTTTT----CAG-TT-GGT-GC-TTTT-TTCGTTGGTCGGTCGCGCAA--GGGGAAAC-AAACACTATTTTT-ATTTAGGCgt
gi|9 : aTTTCGGCAATAAAATATTTT----TGG-TCTGGCCGA-TTTT-TT--TGGGTCGG------AAGTGGGAAAACAAAAAAATATTTTA-ATTTAGGC
blockSeqs : T TATT G T C T T GT A T A
blockSeqs : A TT . . . . . . . A .
blockSeqs : A T . . . . . . . C .
blockSeqs : T . . . . . . . . C .
blockSeqs : T . . . . . . . . C .
blockSeqs : A . . . . . . . . C .
blockSeqs : A . . . . . . . . C .
blockSeqs : T . . . . . . . . A .
blockSeqs : A . . . . . . . . C .
blockSeqs : T . . . . . . . . C .
blockSeqs : T . . . . . . . . T .
blockSeqs : T . . . . . . . . C .
blockSeqs : T . . . . . . . . A .
blockSeqs : A . . . . . . . . . .
blockSeqs : . . . . .
blockSeqs : . . .
blockSeqCons :
originalCons : CTCAGAAATTTTCCCCAATAAANTTTTTT----CAG-TC-GGT-GC-TTTT-TTCGTGGGTCGGTCGCGCAA--GGGGAAAC-AAACACTATTTTT-ATTTAGGCC
finalCons : CTCAGAAATTTTCCCCAATAAANTTTTTT----CAG-TC-GGT-GC-TTTT-TTCGTGGGTCGGTCGCGCAA--GGGGAAAC-AAACACTATTTTT-ATTTAGGCC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): ACAAAACTTAAGGGCCAGCAGGAAAAATTAGGGTCGTTCGGGTTACCTGAACCAGACATATTTTTTATTTAGCC
Unaligned ( gi|19 ): ATATCATTTCGGTTTCGGCAATAACTATTTTTGGGTTAGGCC
Alignments
lowQualScore : 1111
lowQualScore : 1 2222 2 2 2 2 2 33 2 6 2
lowQualScore : . .... . . . . . .. . . .
lowQualScore : 0 0000 7 7 7 7 5 22 4 1 5
consensus : CTCAGAAATTTTCCCCAATAAANTTTTTT----CAG-TC-GGT-GC-TTTT-TTCGTGGGTCGGTCGCGCAA--GGGGAAAC-AAACACTATTTTT-ATTTAGGCC
Reference ( family-624 ) : CTCAGAAATTTTCCCCAATAAANTTTTTT----CAG-TC-GGT-GC-TTTT-TTCGTGGGTCGGTCGCGCAA--GGGGAAAC-AAACACTATTTTT-ATTTAGGCC
gi|1 : GGGTCGGTCGGGTAA--CCGGAAAC-AAACATCTTTTTT-TTTTAGGC
gi|10 : atccgatgccgattttttggacataaaaacttttgagtcggcagttaaaatataCAGAAATTTTTCCCAATAAAATTGTTT----AAG-TC-TGT-GC-TTTT-TTCGTGGGTTGGTTGCACAA--GGGGAAAC-AAACATTATTTTT-ATTTAAGCC
gi|11 : AAAAATTTTCTC-AATAATTTTTTTT----CAG-TC-AGT-GC-TTTT-TTCGTTGGTTGGTCGCGCAA--GGGGAAAC-AAACAATTTTTTA-ATTTAGGCC
gi|12 : gCTTAGAAATTTTCCCCAATATAATTTTTT----CAG-TC-GTT-GC-TTTT-TTTGTGGGTCGGTCGCGCAA--GGGGAAAC-AAACACTATTTTT-ATTTt
gi|13 : aacCTCAGAAATTTTTCACAATAAAACTTTTT----CAG-TC-GGT-GC-TTTT-TTCGTGGGTCAG-CGGGCAA--CAGGAAAC-AAACACTATTTTT-ATTTAGG
gi|14 : CTCAGAAATTTTC------AAATTTTTTTTATTCAG-TT-GGT-GC-TTTT-TTCGTGGGTTGGTCACGCAA--GGGGAAAC-AAACACTATTTTT-ATTT
gi|15 : aaCAGAAATTTTCCCCACT-CATTTTTTT----CAG-TC-GGT-GCTTTTT-TTCGTGGGTCGGTCGCGCAA--GGGGAAAC-AAACACTATCTTT-ATTTAt
gi|16 : AGAAATTTTCCCGAATAAAATTTTTT----CAG-TC-GGT-GC-TTTT-TTCGTGGGTCGGTCACGCAA--GGGGAAAC-AAACAC
gi|18 : aatcaT-TTCGTCGGTCGGTCG-GCAA--CTGGAAAC-AAACA--ATTTTT-
gi|2 : TTTCAGCAATAAAATTTTTT----GGGGTC-AG--GC-CGAT-TTTGAGGGTCGGTCGTGGGA--GGGGAAAC-AAAAAATATTTTA-ATTTAGGcaatatggccca
gi|3 : aaatatcatttcggCTCAGAAATTTTCCCCAATAAATTTTTTT----CAG-TC-GGT-GC-TTTT-TTCGTGGGTCGGTCGCGCAA--GGGGAAAC-AAACACTATTTTT-ATTTAGGCCt
gi|4 : CAGAAATTTTTCCCAATAAAATTTTTT----CAG-TC-GGT-GC-TTTT-TTCGTGGGTCGGTCGCGCAA--GGGGAAAC-AAACA-TATTTTTAATTTAGGCC
gi|5 : TCAGAAATTTTTTACAATAAATTTTTTT----CAG-TC-GGT-GC-TTTT-TTGGTGGGTCGGTCTGGCAA--GGGGAAAC-AAACACTATTTTT-ATTTAGGCt
gi|6 : aAAATTTTCCCCAATAAATTTTTTTTT--CAT-TC-GTT-TT-TTTTTTTCGTGGGTCGGTCACGCAA--GGGGAAAC-AAACATT-TTTTT-ATTTAGGCC
gi|7 : taCTCAGAAATTTCCCCCAATAAATTTTTTTT---CAG-TT-GGT-GC-TTTT-TTCATTGGTCGGTCGCGCAA--GAGAAAAC-ACAGA-TATTTTT-AATT
gi|8 : ccTCAGAAATTTTCCCCAATAAATTTTTTT----CAG-TT-GGT-GC-TTTT-TTCGTTGGTCGGTCGCGCAA--GGGGAAAC-AAACACTATTTTT-ATTTAGGCgt
gi|9 : aTTTCGGCAATAAAATATTTT----TGG-TCTGGCCGA-TTTT-TT--TGGGTCGG------AAGTGGGAAAACAAAAAAATATTTTA-ATTTAGGC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): ACAAAACTTAAGGGCCAGCAGGAAAAATTAGGGTCGTTCGGGTTACCTGAACCAGACATATTTTTTATTTAGCC
Unaligned ( gi|19 ): ATATCATTTCGGTTTCGGCAATAACTATTTTTGGGTTAGGCC