lowQualScore : 2222222222222222222 222222222 1 22222222 3333333333333333333333333333333333333333333333333333 1111 111111111 11111 1111111 1111 1 22222222
lowQualScore : 1 1 1 22 222 77777777 2 1 6666666666666666666 55555 1 33 44 222 1 1 000000000 33 222 5555 1 1 222 2222 33333 6 1 555555555 33333 222 11 00000000 33333 1 5555555555555555555555555555555555555555555555555555 3 1 3 4444 33 2 2 444 666666666 3 55555 2222222 7777 0 55 8 4 66 1 4 55555555 66666 3 1 5
lowQualScore : . . . .. ... ........ . . ................... ..... . .. .. ... . . ......... .. ... .... . . ... .... ..... . . ......... ..... ... .. ........ ..... . .................................................... . . . .... .. . . ... ......... . ..... ....... .... . .. . . .. . . ........ ..... . . .
lowQualScore : 6 6 4 22 666 44444444 4 6 1111111111111111111 22222 4 99 88 444 4 4 333333333 55 222 9999 4 4 444 9999 44444 0 4 555555555 44444 444 99 77777777 66666 4 8888888888888888888888888888888888888888888888888888 2 9 4 4444 22 4 4 444 555555555 5 55555 4444444 0000 1 55 0 0 44 6 3 22222222 22222 2 4 6
consensus : GTACCGCCATT-T-TTCATTTACA--TTTA--A--------AGNAAGT-TC-TT--TT-TA-TT------T-----T-TTT-TTAT-TATCA---ATATCG-AAATAATGCATG-AA-A--A-AT-TTTT-TAAGTCATAAATTCA--T----AAAA-ATAAGAGGATGAACAAA-T---T----TA-----TTAAAT-ATT---------TA-----AATG---AT--T--------TT-----CTTT-CATTG------------A--T--------------TAAG-T----------GAAA--TG-TTTCCGAAAATAGATAAAA-ATATT--CAA-TATAT-TTA--CATA-AACT----ATTAAACGTTTAAAATGCTGTTTCTTAATTTCAGAGANC-GTTTAATA------TACTGAGCAAA-TCCGACTAAA--ATA-CT-TTTG-TCATTTGATTTAAGCAATTCAATAAGCT------TGTACATGGANGGTCTTTGAAAAACATGTTTATTTA
Reference ( gi|4 ) : GTACCGCCATT-T-TTCATTTACA--TTTA--A--------AGAAAGT-TC-TT--TT-TA-TT------T-----T-TTT-TTAT-TATCA---ATATCG-AAATAATGCATG-AA-C--A-AT-TTTT-TAAGTCATAAATTCA--T----AAAA-ATAAGAGGATGAACAAA-T---T----TA-----TTTAAT-ATT---------TA-----AATG---AT--T--------TT-----CTTT-CATTG------------A--T--------------TAAG-T----------GAAA--TG-TTTCCAAAAATAGATAAAAAATATT--CAA-TATAT-TTA--CATA-AACT----ATTAAACGTTTAAAATGCTGTTTCTTAATTTCAGAGATT-TCTTAATA------TACTGAGCAAA-ACTGACTAAA--ATA-CT-TTTA-TCATTTGTTTTAAGCAATTCCATAAGAT------TGTACATAGACGGTCTTTGAAAAACATGTTTATTTA
gi|3 : GTACTGCAATT-T-TTCATTTACAGTTTTAGTA--------AGACGGT-CC-TT--AT--A-CT------T-----T-TT----AT-TATTA---ATATTG-AAATAATACACG-AA-A--A-AC-TTTT--GAGTAATAAATTCC--T----AAAA-AAAAGAGGATGAACAAA-T---T----TA-----TTAAAT-ATT---------TA-----AATG---AT--T--------TT-----CTCT-CATTG------------A--T--------------TCAG-A----------GAT---TG-TTTCCAAAAATAGATAAAAGATATT--CAG-TATAT-TTT--CATA-ACCT----ATTAAAAGTTTAAAACGCTGTTTCTTAATTTCAGAGATT-TTTTAATT------TACTGAACAAA-TTTGACTAAA--ATA-CT-TTTG-TCATTTGTTTTAAGCAATTCCATAAGCT------TGTACATAGCCGTTTTTTGAAAAACATGTTTATTTA
gi|2 : GTACCACCATT-T-CCCATTAACA--TTTT--A--------AGTAAAT-TC---------A-GT------T-----A-TTT-TTAA-TATCA---ATATCA-AAATAATGCATG-AA-A--T-AC-TTTT-TA-GTCATAAATTCC--T----AAAA-ATAAAAGAATGAACAAA-T---T----TA-----TTAAAT-ATT---------TA-----AATG---AT--T--------TA-----CTTT-TATTGCCAACTATATATA--T--------------TTGG-TATCTATGTCAGAGA--TGGTTTCTGAAAATAGATA-------TT--CAA-TAGAT-TTA--CATGTAATT----TTTAA-CATTTAAAATGCTGTTTCTTAATTTCCGAGATT-GTTTAATATACATGTACTGAGCAAA-TCCAACTCAA--ATA-CT-TTTG-TCATTTGATTTAAGCAATTTCATAAGCT------TGTACA-----------TGAAAAACAAATTTATTTAtatacatctttctaaaatcagatgtaaatag
gi|21 : tGTACCGCCATT-T-TTCATTTACA--TTTA--A--------AGAAAGT-TC-TT--TT-TA-TT------TATTATT-TTT-TTAT-TATCA---ATATCG-AAATAATGCATG-AA-A--T-TT-TTTT-TAAGTCACAAATTCA--T----AAAA-ATAAGAGGATGAACAAA-T---T----TA-----TTAAAT-ATT---------TA-----AATG---AT--T--------TT-----CTTT-CATTG------------A--T--------------TAAG-T----------GAAA--TG-TTTCCAAAAATTGATtatgcatctttctaaaatcactgtcga
gi|30 : GTACCGCCATT-T-TTCATTTACA--TTTA--A--------AGAAAGT-TC-TT--TT-TAATT------T-----T-TTT-TTAT-TATCA---ATATCG-AAATAACGCATG-AA-A--A-AT-TTTT-TAAGTCATAAATTCA--T----AAAA-ATAAGAGGATGAACAAA-T---T----TA-----TTAAAT-ATT---------TA-----AATG---TT--T--------TT-----CTTT-CATTG------------G--T--------------TAAG-T----------GAAA--TG-TTTC
gi|29 : GTACCGCCATT-T-TTCATTTACA--TTTA--A--------AGAAAGT-TC-TT--TT-TAATT------T-----T-TTT-TTAT-TATCA---ATATCG-AAATAACGCATG-AA-A--A-AT-TTTT-TAAGTCATAAATTCA--T----AAAA-ATAAGAGGATGAACAAA-T---T----TA-----TTAAAT-ATT---------TA-----AATG---TT--T--------TT-----CTTT-CATTG------------G--T--------------TAAG-T----------GAAA--TG-TTTC
gi|26 : GTACCGCCATT-T-TTCATTTACA--TTTA--A--------AGAAAGT-TC-TT--TT-TA-TTATTTT-T-----T-TTTATTAT-TATCA---ATATCG-AAATAATGCATG-CA-A--A-TT-TTTT-TAAGTCATAAATTCA--T----AAAA-ATAAGAGGATGAACAAA-T---T----TA-----TTAAAT-ATT---------TA-----AATG---AT--T--------TT-----CTTT-CATTG------------A--T--------------TAAG-T----------GAAA--TG-TTTC
gi|24 : GTACCACCATT-T-TTCATTTACA--TTTA--A--------AGAAAGT-TC-TT--TT-TA-TTATTTTTT-----T-TTTATTAT-TATCA---ATATCG-AAATAATGCATG-CA-A--A-TT-TTTT-TAAGTCATAAATTCA--T----AAAA-ATAAGAGGATGGACAAA-T---T----TA-----TTAAAT-ATT---------TA-----AATG---AT--T--------TT-----CTTT-CATTG------------A--T--------------TAAG-T----------GAAA--TG-TTT
gi|25 : GTACCGCCATT-T-TTCATTTACA--TTTA--A--------AGAAAGT-TC-TT--TT-TA-TTATTT--T-----T-TTT-TTAT-TATCATCAATATCG-AAATAATGCATG-CA-A--A-TT-TTTT-TAAGTAATCAATTCA--T----AAAA-ATAAGAGGATGAACAAA-T---T----TA-----TTAAAT-ATT---------TA-----AATG---A---T--------TT-----CTTT-CATTG------------A--T--------------TAAG-T----------GAAA--TG-TTTC
gi|27 : GTACAGCCATT-T-TTCATTTACA--TTTA--A--------AGTAAGT-TC-AT--ATATA-TT------T-----C-TT----AT-TATCA---ATATAG-AAATAATGCATG-AA-A--A-AC-TTTT--AAGTCATAAATTCA--T----AAAA-ATAAGAGGATGAACAAG-T---T----TA-----TTAAAT-ATT---------TA-----AATG---AT--T--------TT-----CTTT-CATTG------------A--T--------------TAAG-A----------G-AA--TG-TTTCCAAAAA
gi|6 : GTACCGCCATT-T-TCCATTAACA--TTTT--A--------AGTAAAA-TC---------A-TT------T-----T-TAC-TTAA-TATCA---AAATCG-AAATAATGCATG-AA-C--T-AC-TTTT-TA-GTCATAAATTCT--T----AAAA-ATAAGAGGATGAACAAA-T---T----TA-----TTAAAT-ATT---------TA-----AATG---AT--T--------TA-----CTTT-CACTGCCAACT------A--TATATACTTGGTATCTATG-T----------AAGAGTTGTTTTCCGAAAGTAGATAAAATATATT--CAA-CATAT-TTA--TATA-AAAT----ATTAAACGTTTAAAATGCTGTTTCTTAAC-------ATTATCATAAT----------TAAGCCGATAC-GAATAAACGAAA-CTGTTCA-TTATTTGGTT
gi|1 : tGTACCGCCATT-T-TCCATTAACA--TTTT--A--------AGTAATT-TC-AT--TT-T--TT------T-----C-GTC-TTAA-AATCA---AAATCA-AAATAATGCATG-GA-A--T-AT-TTTC-TAA-TCATCAACTCC--T----TAAA-ATAAGAGGACGAACTAA-TATAT----TAAATAGTTTAATGATTTTCCTTCCTTC-----AATGCCAAC--T--------TCATATACTTTGCATCG------------ACAT--------------CAAA-T----------------TT-TTTTCTGATATTGATA-------TT--CAA-TATAT-TTA--CATA-TCAT----ATTAAACATTTAAAATGCTGTTTCTTAATTTCAGA--------TAA---------ACTGAGCAAA-TCCGACTATG--ATA-CT-TCTG-TCATTTGATTTAAGCAATTCCATAAGCTTGTACATGTACATGGACGATCTTGGGAAAACATGTTTTTCTA
gi|22 : tGTACCACCATA-T-TTCATTAACA--TTTA--A--------AGAAAGT-TC-TC--TT-T------------------TTT-TTAT-TATCA---ATATCG-AAATAATGCATGAAA-C--A----TTTT-TAAGTCATGAATTCA--T----AAAA-ATAAGA----------------T----TA--------AAC-ATT---------TA-----AATG---AG--T--------TT-----CTTT-CATTG------------A--T--------------TAAG-T----------G-AA--TG-TTTCAAAAAATAGATAAAATATATT--CAT-TTTAT-TTA--CATA-aatacgtctttctaaactcactgttgcatggacagatgcaaataaaat
gi|14 : GTACCGCCATT-T-TCCATTATCA--TTTT--A--------AGTAAAT-TC-AT--TT-T----------T-----T-TTC-TTAA-TATTG---ATATTG-AAATAATGCATG-AAAT--A-AT-TTTT---AGCCATACATTCC--T----AAAA-GTAACAGGATGAACAAA-T---T----TA-----TTAAAT-GTT---------TA-----AATG---AT--T--------TT-----CTTT-CACTGCCAACTTTATATA--T--------------TTGG-CTTCTGCATCAGAGAT-TG-TTTCCGAAAATAGATAAAATATATT--CAA-TATAT-TTA--CATA-
gi|34 : ttGTACCGCCATT-T-TTCATTTACA--TTTA--A--------AGAAAAT-CC-------------------T-----T-TTT-TTAT-TATCA---ATATCGAAAAAAATACATG-AA----A-A--TTTT-TAAGTCATAAATTCA--T----TAAA---AAGAGGATGAACAAA-T---T----TA-----TTAAAT-ATT---------TA-----AATG---AT--
gi|11 : GTACTGCCATT-T-TTCATTTACA--TTGT--A--------GGTAAAT-TC-AT--TT-T--TT------T-----T-ATA-TTAT-TATCA---ATATCG-AAATAATGTATG-AA-A--A-AC-ATTT--AAGTCATAAATTCC--T----AAAA-ATAAGAGGACGAAAAAA-A---T----TA-----TTAAAT-ATT---------TA-----AATG---AT--G--------TT-----CTTT-CATTG------------gatta
gi|37 : tGTACCGCCATT-T-TTCATTTACA--TTTA--A--------AGTAAGT-TC---------A-TT------T-----T-ATT-TTAT-TATCA---ATATCG-AAATAATGCCTG-AA-A--A-A--AATT-TAAGTCATAAATTCC--T----TAAA-ATAAAAAGccaactagatatacttgaacatacttgataattattttaaattgaatgtcatataaacagatatcaaattccttttttttttggcaacgattacgattttgtaactccgactataaatact
gi|28 : tGTACCGTTATA-T-TTCAATAACA--TTTC--ATATATATTAAATAGT-TA-TT--TA-TG-TT------T-----T-A-----AA-TATAA---ACGTCA-AAATAAT--ATA-AA-T--ATAC-TTTT-TCAATCCCAAGTTAA--TCAAGAAGA-AGAAGAAGATGAACATG-T---T----TA-----TTGAAT-ATT---------TA-----AATG---AT--TATTA----TT-----CTTT-CATTG------------
gi|15 : aaGTACAGTCATA-T-TTCATTACCA--TTTA--T--------ATCAAATATG-TA--TT-TA---------T-----G-TTT-TAAA-TATAA---ATGTCA-AAATGAT--ATA-AG-A--A-AT-TCT-----GT------TCTA--T----AAGA-AGAAATGGATGAACACA-T---T----TA-----TTAAAC-ATT---------TA-----AATG---ATAATTA------TT-----ATTT-CATT----------------------------------G-T----------CAAA--TA-T-------------------ATATT--TAA----AT-TT---CATATCAC-----ATCAAACATTTAAATTTTTATTTCTTAATTTCAGAGAccaca
gi|18 : taGTAGCGTCATA-T-TTCATTACCA--TTTG--A--------TATATAT-TA-TACATT-TG-TT------T-----TATTT-TTAAATATAA---ATATCA-AAATAATACAAG-AA-A--T-AC-TTTT-TAATTC-TAAGTTCT--T----------CAAGAAGATGAACACG-T---T----TA-----TTAAAC-ATT---------AA-----AATG---AT--TATGTATGATT-----CTTT--GTTG------------A------------------AAG-T-----------AAC--TA-TTTacgttttatat
gi|40 : ttaGTACCGCCTTT-T-TCCATTTACA--TTTA--A--------ACAAAGT-TC------A-TA-TT------T-----T-tacaatttggcctgcagagcacgtttt
gi|12 : tGTACCGCCATA-T-TTCATTACCA--CTTG--AT-------ACATATT-TA-ATA-TT-TA-TTAA----G-----G-TTT-TAAA-TATAA---ATATCA-AAGTAATACAAG-AA-A--T-AT-TTTT-CAATTC-TGATTTTT--T----CAAG-A--AGAGGATAAACACA-T---G----TT-----TTAAAC-ATT---------TAATAATAATC---AT--TA-------TT-----CTTT-CATTG----------------------------------------------------------CC--AACT--ATAA-----ATT--CAA--A-GT-TCA--CA------------TTAAACAATTAAAGTGTTACTTCTCAATTTCAGAGAAC-GTTTAATA------TTCTGA-------------------------TTCAGTCATTCGATTTAAACAATTCAATA
gi|16 : TACCGCCCCT-T-TTCATTTACA--TTTA--A--------ACAAAGT-TC-AT------ACTT------T-----T-TTT-TTAT-TATCG---ATATCG-AAATAATGTATG-AA-A--A-AT-TTTT--AAGTCATCAATTCA--T----AAAA-AT--GAGGATAATCAAA-T---T----TA-----TTAAGT-ATT---------TA-----AATG---AT--T--------TT-----CTTT-CATTG------------A--T--------------TAAG-T----------GAA---TG-TTTCCAAAAATAGATAAAACATATT--CAA-TATAT-TTA--CATA-AATT----ATTAA
gi|17 : TACCGCCATT-T-TCAATTAACA--TTTT--A--------AATTAAT-TCATT--GT-TG-TT------T-----T-TTT-------ATCA---ATATTG-AAATAATGCATG-AA------AT-ACTTATAAGTCATAAATCCC--T----TAAA-ATAAGAGAATGAACAAAAT---TAATATA-----TCAAAT-ATT---------TA-----AATG---AG--A--------TT-----ATTT-TATTA------------A--T--------------TCAG-A----------GAT---TG-TTTCCGAAAATAGATAAAAGACATT--CAA-TATAT-TTA--CAT
gi|8 : tGCCACTATATTCATCTACA--TTTA--A---------GAAAAT-TC-TT--TT-T----------------T-TTA-TTAT-TATCA----TATCG-ATATAATGCATG-AAAC--A----TTTT-TAAGTCATAAATTCA--T----AAAA-ATAAAAGGATGAACAAA-T---T----TA-----TTAAAT-ATT---------TA-----AATG---AT--T--------TT-----CTTT-CATTG------------A--T--------------TAAG-T----------GAA---TG-TTTCCAAAAATAGATAAAAGATATT--CAA-TATAT-TTA--CATA-AACT----ATTAAACGTTTAAAATGCTTTTTCTTAATTTCAGAGATT-TCTTAATA------TACTGAGCAAA-ACTGACTAGA--ATA-CT-TTTA-TCATTTGTTTTAAGCAATTt
gi|20 : ATT-T-TTCATTTATA--TTTT--A--------AGTAAGT-TC-AT--AT-AA-TT------T-----T-TT--------AACA---ATATCG-AAATAATGCATG-CA-A--A-AT-TTT---AAGTCATAAATTCC--T----AAAAAATAAGAGGATGAACAAA-T---T----TA-----TTAAAT-ATT---------TG-----AATG---AT--T--------TT-----CTTT-CATTG------------A--T--------------TCAGAT------------AT--TG-TTTTCAAAAATAGATAAAAGATATT--CAA-TATAT-TTA--CATA-A
gi|7 : ca-TA-TT------TA----T-GTT-TTAAATATAA---ATGTCA-AAATAATA---A-AA-CGAA-ATACTTT-CAATCCA-AAGTGCA--TCTAGAAGA-AGAATAGAATGAACACG-T---T----TA-----TTAAAC-ATT---------TA-----GATG---AT--TATGA----TT-----CTTC-CATTG----------------------------------------------------------CCAAATAC---------ATGT-----A-TATAG-TTAAGCGTC-A--C----ATTAAAC-------ATGTTATTTCTTATATTCAGAGAAT-GGTTTATA------TAATGCGCAAG-TCCAATTAAA--ATG-GT-TTTC-TCAATTGATTCAAGCAATTCAATAAGCT------T
gi|32 : tatatatattaaatatgT------T-----T-TTT-TTAT-TATCA---ATATCG-AAATAATGCATG-AA-A--A-AT-TTTT-TAAGTCATAAATTCA--T----AAAA-ATAAGAGGATGAACAAA-T---T----TA-----TTAAAT-ATT---------TA-----AATG---AT--T--------TT-----CTGT-CATTG------------A--T--------------TAAG-T----------GAAA--TG-TTTCCAAAATTAGATAAAAAATATT--CAC-TATAT-TTA--CATA-ctgttttcaatgcagtcgttaccgaagatatttac
gi|33 : -TTT-TAAA-TATAA---ATATCG-AAATAATACAAG-AT-T--T-TT-TTTT-TAA-TTATTAATTTAAAG----AAGA-AAAAAAAGATTAACACA-T---T----TA-----TTAAAT-ATT---------AA-----AATG---AT--TATTA----TT-----CTTT-CAGTG------------
gi|19 : gccttatacataaatacgtatgT-TATTA---ATATCG-AAATAATGCATG-AAAC--A----TTTT-TAAGACAAAAAATCA--T----AAAA-GTAAGAGGATGAACAAA-T---T----TA-----TTAAAT-ATT---------TA-----AATG---AT--T--------TT-----CTTT-CATTG------------A--T--------------TAAG-T----------G-AA--TG-TTTCCAAAAATAGATAAAAG--ATT--CAA-TGTAT-TTA--CATA-AACT----ATTAAACGTTTTAAATGCTGTTTCTTAATTTCAGAGATT-TCccaattgtttatttaaatttcagattacg
gi|36 : -TATCA---ATATCG-AAATAATGCATG-CA-A--A-TT-TTTT-TAAGTCATAAATTCA--T----AAAA-ATAAGAGGATGAACAAA-T---T----TA-----TTAAAT-ATT---------TA-----AATG---AT--T--------TT-----CTTT-CATTG------------A--T--------------TAAG-T----------GAAA--TG-TTTC
gi|9 : AGAGGATGAACACG-T---T----TG-----TTAAAC-ATT---------TA-----AATG---AT--TAGTA----TT-----ATTT-CATTG----------------------------------------------------------CC--AAATATAT-----ATAT-----A-TAAAT-TT---CA------C----ATTAAACATTTACAATGTTATTTCTTATATTCAGAGAAC-GTTTTATA------TACTGAGCAAA-TCCGATTGAA--ATAGAT-TTTG-TCATTTTACTTAAAGAATT
gi|5 : ttgaaatgtaatatatcaatccgaagttcttcaggaagaagaagaagcAAAAAT---TATTAAACATTGCCAAATATATCTT-----TG-AATTTCATACCAAACATTTAAAATATTATTTCTGAATTTCTGAGAAC-GTTTAATA------TGCTGAGCTAA-TCCGACTAAA--ATATTT-TTTG-TCATTTGATTTAAGCAATTCAATAGGCT------TGTATATGGAAGGTTTT----AAGCATATgtgttcatacaccgctaatcaataaacatactattactggaatatgttttttcaggtaaaccgtagaggttt
gi|31 : tagtactgtcatatttcattacatctaccatttgatatacattaaatgtttatttatattttagatatacatgtaaaagataatacaagaaataattttcaagttcttcaagaagaagaagaaaacgatgaaT----ATTAAACATTTAAAGTTCTGTTTCTTAATTTCGGAAAAT-GTTTAATA------TACTGATCACA-TCCAACCATA--ATA-CT-TTTG-TCATTTGATTTAAGCAACTTAATAAGCT------TGTATGTGGAAGGTCTTTGAAAAAacagctcatcatcatacaaaatactta
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): TAGTACCATCATATTTCATTACCATTTTATATATATTCATCTTTTTTTAAAAGTATTAATATTAAAATTATACAAGAAAAACTTCAAACATAAGTTCCTTGAGAACACATGTACGGGTATTAAATGATGACTTTCATCACCAACTTTATATACTTGTCAGCTTTATCTGAGATTGTTTCGTAAAAAAGTTAAAATCTATTCAATACAAGTTAAACAATGAAAACGCTGTTTCGTAATTTCAACATTTATAGGTGAAATAGGTAAATAGAAATATTTTT
Unaligned ( gi|13 ): ATTAGTTCCGTTAAAGTTATTTACCATTTGATATATCTTGAATATCAATTTATGTTTTAAATATAAATGTCAACAAATTACAAGAAATACTTTTCAATCCTCCGTTCTTCAAGATGAATAAGACTGACAATGAATACGTTTATCAAACATTTAAATGGTTATCATTTTTATTGCCAAATCAATATTTAAATTTCACATTAAACATTTTAAATCTTATTTCTTAAATTCAGATAACTTATTATATACGGA
Unaligned ( gi|23 ): TTGATTTATGTTAAATGTGTATTTATGTTTTAAATATAAATGTCTGAATAATGTAAGAAATCCTTTTCGATCTTAAGTTATTCAAGAAGAAGAAGAGGATGGAAACGTTTATTAAACATTAATATGATTATTATTCGTTCATTGTAAACATATACCTAAATTTCACCTTAAACATTTACA
Unaligned ( gi|35 ): TGTACCGTCATACTCCATTACCATTTGATATATAATAAATATTGATCTACGTTTTAAATATAAATGTCAAAATACTATAAAAAAATACTTTTTAAAGTTTTCAATCCAAAGTTCTTCAAGAAGAAGAAAATGGTGAC
Unaligned ( gi|38 ): TAGTACCGGCATATTTCATTACCTGTTGATATATGTATTTGGTTTTTATTTATGTTTTGAATATAAATGTAAAACTAGTATAATAAATACTTGAACTTTTTTAAGA
Unaligned ( gi|39 ): ATTTGTAACGCCATTTGCCATTAACATTTTAAGTAAATTCATTTACAATAATATAAATACCGAAAT
Alignments
lowQualScore : 22222222222222222222 11111111 2222222222222222222222222222222222222222222222222 22222 111111111 111111
lowQualScore : 1 1 1 22 222 33333 2 1 33333333333333333333 66666 1 2 88888 222 1 1 333 6 222 333 6666 1 1 2222 33333 11 66666666 66666666 33333 5555555555555555555555555555555555555555555555555 1 33 1 2 666666 3333 9999999 3 00000 22 2 333 2 777777777 5555 2 3 3 999999 3 44 6 3 3 666666 3 1 3
lowQualScore : . . . .. ... ..... . . .................... ..... . . ..... ... . . ... . ... ... .... . . .... ..... .. ........ ........ ..... ................................................. . .. . . ...... .... ....... . ..... .. . ... . ......... .... . . . ...... . .. . . . ...... . . .
lowQualScore : 5 5 6 00 777 77777 4 5 44444444444444444444 00000 3 7 66666 222 2 2 999 4 222 222 6666 2 2 7777 11111 77 00000000 00000000 22222 4444444444444444444444444444444444444444444444444 4 44 4 9 444444 9999 5555555 8 88888 88 0 555 0 999999999 7777 7 2 1 666666 3 66 7 3 0 444444 3 0 2
consensus : GTACCGCCATT-T-TTCATTTACA--TTTA--A-----AGNAAGT-TC--TT--TT-TA-TT------T-----T-TTT-TTA---T-TATCA---ATATCG-AAATAATGCA-TGAAA-A-ATTTTTTAAGTCATAA---ATTCA--T----AAAA-ATAAGAGGATGAAC-AAATT----TATTAAATATTTA-----AATGAT--T--------TTC--------TTTCAT-----TG------------A---T--------------TAAGT----------GA-A-A--T-G-TTTC----CGA----AAATA-------GAT-AA--AA-ATATT--CAA-T---ATAT-TTACATA-AACT----ATTAAACGT----TTAAA-ATGCTGTTTCTTAATTTCAGAGAACGTT-TAATATAC------TGAGCAAATCCGACTA-AA--ATA-CT-TTTGTCATTTGATTTAAGCAATTCNATAAGCT------TGTACATGGACGGTCTTTGAAAAACATGTTTATTTA
Reference ( family-614 ) : GTACCGCCATT-T-TTCATTTACA--TTTA--A-----AGNAAGT-TC--TT--TT-TA-TT------T-----T-TTT-TTA---T-TATCA---ATATCG-AAATAATGCA-TGAAA-A-ATTTTTTAAGTCATAA---ATTCA--T----AAAA-ATAAGAGGATGAAC-AAATT----TATTAAATATTTA-----AATGAT--T--------TTC--------TTTCAT-----TG------------A---T--------------TAAGT----------GA-A-A--T-G-TTTC----CGA----AAATA-------GAT-AA--AA-ATATT--CAA-T---ATAT-TTACATA-AACT----ATTAAACGT----TTAAA-ATGCTGTTTCTTAATTTCAGAGANCGTT-TAATATAC------TGAGCAAATCCGACTA-AA--ATA-CT-TTTGTCATTTGATTTAAGCAATTCAATAAGCT------TGTACATGGANGGTCTTTGAAAAACATGTTTATTTA
gi|1 : GTACCGCCATT-T-TCCATTAACA--TTTT--A-----AGTAATT-TC--AT--TT-T--TT------T-----C-GTC-TTA---A-AATCA---AAATCA-AAATAATGCA-TGGAA-T-ATTTTCTAA-TCATCA---ACTCC--T----TAAA-ATAAGAGGACGAAC-TAATA----TATTAAATAGTTT-----AATGAT--T--------TTCC-------TTCCTT-----CA------------A---TGC------------CAACT----------TC-ATA--T-A-CTTTGCATCGACATCAAATTTTTTTCTGAT-AT--TG-ATATT--CAA-T---ATAT-TTACATA-TCAT----ATTAAACAT----TTAAA-ATGCTGTTTCTTAATTTCAGA--------TAA---AC------TGAGCAAATCCGACTA-TG--ATA-CT-TCTGTCATTTGATTTAAGCAATTCCATAAGCTTGTACATGTACATGGACGATCTTGGGAAAACATGTTTTTCTA
gi|10 : tGTACCATCATA-T-TTCATTACCA--TTTT--A-----TATATAT-TC----------A-TC------T-----T-TTT-TTAAAAG-TATTA---ATATTA-AAATTATACA-AGAAA-A-ACTTC--AAA-CATAA---GTTCC--TT---GAGA-ACAC----ATGTAC-GGGT------ATTAAATG----------ATGAC--T--------TTCATCACCAACTTTATATACTTGTC----------AGCTT--------------TATCT----------GA-G-A--TTG-TTTC----GTA----AAAAA-------GTT-AA--AATCTATT--CAA-T---ACA-----------A------GTTAAACAA----TGAAA-ACGCTGTTTCGTAATTTCAaatacgtctttctaaactcactgttgcatggacagatgcaaataaaat
gi|11 : taGTACTGCCATT-T-TTCATTTACA--TTGT--A-----GGTAAAT-TC--AT--TT-T--TT------T-----T-ATA-TTA---T-TATCA---ATATCG-AAATAATGTA-TGAAA-A-ACATTT-AAGTCATAA---ATTCC--T----AAAA-ATAAGAGGACGAAA-AAAAT----TATTAAATATTTA-----AATGAT--G--------TTC--------TTTCAT-----TGCCA---------A---C--------------TA-------------GA-T-A--T-A-CTT------GA----ACATACTT----GAT-AA--TT-ATTTT--AAA-TTGAATG--TCATATA-AAC--------AGATAT----C--AA-ATTCCTTTTTTT--TTT--GGCAACGAT-TACGATTT------T--GTAACTCCGACTATAA--ATA-CT-acatttataggtgaaataggtaaatagaaatattttt
gi|12 : tGTACCGCCATA-T-TTCATTACCA--CTTG--A-----TACATAT-TTAATA--TT-TA-TTAA----G-----G-TTT-TAA---A-TATAA---ATATCA-AAGTAATACA-AGAAA-T-ATTTTTCAATTC-TGA---TTTTT--T----CAAG-A--AGAGGATAAAC-ACATG----TTTTAAACATTTAATAATAATCAT--TA-------TTC--------TTTCAT-----TG-------------------------------------------------------------C----C------AACT---------AT-AA-------ATT--CAA-----A-GT-TCAC------------ATTAAACAA----TTAAA-GTGTTACTTCTCAATTTCAGAGAACGTT-TAATATTC------TGA-----------------------T-TCAGTCATTCGATTTAAACAATTCAATA
gi|14 : GTACCGCCATT-T-TCCATTATCA--TTTT--A-----AGTAAAT-TC--AT--TT-T----------T-----T-TTC-TTA---A-TATTG---ATATTG-AAATAATGCA-TGAAATA-ATTTTT--AGCCATAC---ATTCC--T----AAAA-GTAACAGGATGAAC-AAATT----TATTAAATGTTTA-----AATGAT--T--------TTC--------TTTCAC-----TGCCAACTTTATATA---T--------------TTGGCTTCTGCATCAGA-G-AT-T-G-TTTC----CGA----AAATA-------GAT-AA--AATATATT--CAA-T---ATAT-TTACATA-
gi|15 : ttGTACAGTCATA-T-TTCATTACCA--TTTA--T-----ATCAAATATG--TA--TT-TA---------T-----G-TTT-TAA---A-TATAA---ATGTCA-AAATGAT--A-TAAGA-A-ATTCT----GT---------TCTA--T----AAGA-AGAAATGGATGAAC-ACATT----TATTAAACATTTA-----AATGATAATTA------TTA--------TTTCAT-----T-----------------------------------GT----------CA-A-A--T-A-T-------------------------------------ATATT--TAA-------AT-TT-CATATCAC-----ATCAAACAT----TTAAA-TTTTTATTTCTTAATTTCAGAGAACGTT-TTATAT
gi|16 : taTACCGCCCCT-T-TTCATTTACA--TTTA--A-----ACAAAGT-TC--AT------ACTT------T-----T-TTT-TTA---T-TATCG---ATATCG-AAATAATGTA-TGAAA-A-ATTTTT-AAGTCATCA---ATTCA--T----AAAA-AT--GAGGATAATC-AAATT----TATTAAGTATTTA-----AATGAT--T--------TTC--------TTTCAT-----TG------------A---T--------------TAAGT----------G--A-A--T-G-TTTC----CAA----AAATA-------GAT-AA--AACATATT--CAA-T---ATAT-TTACATA-AATT----ATTAA
gi|17 : TACCGCCATT-T-TCAATTAACA--TTTT--A-----AATTAAT-TCA-TT--GT-TG-TT------T-----T-TTT----------ATCA---ATATTG-AAATAATGCA-TGAAA-T-ACTTAT-AAGTCATAA---ATCCC--T----TAAA-ATAAGAGAATGAACAAAATTAATATATCAAATATTTA-----AATGAG--A--------TTA--------TTTTAT-----TA------------A---T--------------TCAGA----------G--A-T--T-G-TTTC----CGA----AAATA-------GAT-AA--AAGACATT--CAA-T---ATAT-TTACAT
gi|18 : tGTAGCGTCATA-T-TTCATTACCA--TTTG--A-----TATATAT-TA--TACATT-TG-TT------T-----TATTT-TTA---AATATAA---ATATCA-AAATAATACA-AGAAA-T-ACTTTTTAATTC-TAA---GTTCT--T----------CAAGAAGATGAAC-ACGTT----TATTAAACATTAA-----AATGAT--TATGTATGATTC--------TTT-GT-----TG------------A-------------------AAGT-----------A-A-C--T-A-TTTt
gi|19 : tta---T-TATTA---ATATCG-AAATAATGCA-TGAAA-C-ATTTTT-AAGACAAAA---AATCA--T----AAAA-GTAAGAGGATGAAC-AAATT----TATTAAATATTTA-----AATGAT--T--------TTC--------TTTCAT-----TG------------A---T--------------TAAGT----------G--A-A--T-G-TTTC----CAA----AAATA-------GAT-AA--AA-G-ATT--CAA-T---GTAT-TTACATA-AACT----ATTAAACGT----TTTAA-ATGCTGTTTCTTAATTTCAGAGAtacaatttggcctgcagagcacgtttt
gi|2 : GTACCACCATT-T-CCCATTAACA--TTTT--A-----AGTAAAT-TC----------A-GT------T-----A-TTT-TTA---A-TATCA---ATATCA-AAATAATGCA-TGAAA-T-ACTTTTTA-GTCATAA---ATTCC--T----AAAA-ATAAAAGAATGAAC-AAATT----TATTAAATATTTA-----AATGAT--T--------TAC--------TTTTAT-----TGCCAACTATATATA---T--------------TTGGTATCTATGTCAGA-G-A--T-GGTTTC----TGA----AAATA-------GAT-A---------TT--CAA-T---AGAT-TTACATGTAATT----TTTAA-CAT----TTAAA-ATGCTGTTTCTTAATTTCCGAGATTGTT-TAATATACATGTACTGAGCAAATCCAACTC-AA--ATA-CT-TTTGTCATTTGATTTAAGCAATTTCATAAGCT------TGTACA-----------TGAAAAACAAATTTATTTAtttc
gi|20 : tATT-T-TTCATTTATA--TTTT--A-----AGTAAGT-TC--AT--AT-AA-TT------T-----T-TT-----------AACA---ATATCG-AAATAATGCA-TGCAA-A-ATTTT--AAGTCATAA---ATTCC--T----AAAAAATAAGAGGATGAAC-AAATT----TATTAAATATTTG-----AATGAT--T--------TTC--------TTTCAT-----TG------------A---T--------------TCA------------GATA-T--T-G-TTTT----CAA----AAATA-------GAT-AA--AAGATATT--CAA-T---ATAT-TTACATA-Atatgcatctttctaaaatcactgtcga
gi|21 : caGTACCGCCATT-T-TTCATTTACA--TTTA--A-----AGAAAGT-TC--TT--TT-TA-TT------TATTATT-TTT-TTA---T-TATCA---ATATCG-AAATAATGCA-TGAAA-T-TTTTTTTAAGTCACAA---ATTCA--T----AAAA-ATAAGAGGATGAAC-AAATT----TATTAAATATTTA-----AATGAT--T--------TTC--------TTTCAT-----TG------------A---T--------------TAAGT----------GA-A-A--T-G-TTTC----CAA----AAATT-------GAT-
gi|22 : GTACCACCATA-T-TTCATTAACA--TTTA--A-----AGAAAGT-TC--TC--TT-T------------------TTT-TTA---T-TATCA---ATATCG-AAATAATGCA-TGAAA-C-A-TTTTTAAGTCATGA---ATTCA--T----AAAA-ATAAG--------------------ATTAAACATTTA-----AATGAG--T--------TTC--------TTTCAT-----TG------------A---T--------------TAAGT----------G--A-A--T-G-TTTC----AAA----AAATA-------GAT-AA--AATATATT--CAT-T---TTAT-TTACATA-
gi|23 : -TA-TT------TA----T-GTT-TTA---AATATAA---ATGTCT-GAATAATGTA-AGAAA-T-CCTTTTCGA-TCTTAAGTTATTCAA-G----AAGA-AGAAGAGGATGGAA-ACGTT----TATTAAACATTAA-----TATGAT--TATTA----TTC--------GTTCAT-----TG------------
gi|24 : ttgatttatgttaaatgtgGTACCACCATT-T-TTCATTTACA--TTTA--A-----AGAAAGT-TC--TT--TT-TA-TTATTTTTT-----T-TTTATTA---T-TATCA---ATATCG-AAATAATGCA-TGCAA-A-TTTTTTTAAGTCATAA---ATTCA--T----AAAA-ATAAGAGGATGGAC-AAATT----TATTAAATATTTA-----AATGAT--T--------TTC--------TTTCAT-----TG------------A---T--------------TAAGT----------GA-A-A--T-G-TTTtaaacatatacctaaatttcaccttaaacatttaca
gi|25 : GTACCGCCATT-T-TTCATTTACA--TTTA--A-----AGAAAGT-TC--TT--TT-TA-TTATTT--T-----T-TTT-TTA---T-TATCATCAATATCG-AAATAATGCA-TGCAA-A-TTTTTTTAAGTAATCA---ATTCA--T----AAAA-ATAAGAGGATGAAC-AAATT----TATTAAATATTTA-----AATGA---T--------TTC--------TTTCAT-----TG------------A---T--------------TAAGT----------GA-A-A--T-G-TTTC----
gi|26 : GTACCGCCATT-T-TTCATTTACA--TTTA--A-----AGAAAGT-TC--TT--TT-TA-TTATTTT-T-----T-TTTATTA---T-TATCA---ATATCG-AAATAATGCA-TGCAA-A-TTTTTTTAAGTCATAA---ATTCA--T----AAAA-ATAAGAGGATGAAC-AAATT----TATTAAATATTTA-----AATGAT--T--------TTC--------TTTCAT-----TG------------A---T--------------TAAGT----------GA-A-A--T-G-TTTC----
gi|27 : GTACAGCCATT-T-TTCATTTACA--TTTA--A-----AGTAAGT-TC--AT--ATATA-TT------T-----C-TT----A---T-TATCA---ATATAG-AAATAATGCA-TGAAA-A-ACTTTT-AAGTCATAA---ATTCA--T----AAAA-ATAAGAGGATGAAC-AAGTT----TATTAAATATTTA-----AATGAT--T--------TTC--------TTTCAT-----TG------------A---T--------------TAAGA----------G--A-A--T-G-TTTC----CAA----AAA
gi|28 : GTACCGTTATA-T-TTCAATAACA--TTTC--ATATATATTAAAT-AG--TTA-TT-TA-TG------T-----T-TTA---A---A-TATAA---ACGTCA-AAATAAT--A-TAAAT-ATACTTTTTCAATCCCAA---GTTAA--TCAAGAAGA-AGAAGAAGATGAAC-ATGTT----TATTGAATATTTA-----AATGAT--TATTA----TTC--------TTTCAT-----TG------------
gi|29 : aaGTACCGCCATT-T-TTCATTTACA--TTTA--A-----AGAAAGT-TC--TT--TT-TAATT------T-----T-TTT-TTA---T-TATCA---ATATCG-AAATAACGCA-TGAAA-A-ATTTTTTAAGTCATAA---ATTCA--T----AAAA-ATAAGAGGATGAAC-AAATT----TATTAAATATTTA-----AATGTT--T--------TTC--------TTTCAT-----TG------------G---T--------------TAAGT----------GA-A-A--T-G-TTTC----ccaca
gi|3 : GTACTGCAATT-T-TTCATTTACAGTTTTAGTA-----AG-ACGG-TC--CT--TA-TA-CT------T-----T-TT----A---T-TATTA---ATATTG-AAATAATACA-CGAAA-A-ACTTTT-GAGTAATAA---ATTCC--T----AAAA-AAAAGAGGATGAAC-AAATT----TATTAAATATTTA-----AATGAT--T--------TTC--------TCTCAT-----TG------------A---T--------------TCAGA----------G--A-T--T-G-TTTC----CAA----AAATA-------GAT-AA--AAGATATT--CAG-T---ATAT-TTTCATA-ACCT----ATTAAAAGT----TTAAA-ACGCTGTTTCTTAATTTCAGAGATTTTT-TAATTTAC------TGAACAAATTTGACTA-AA--ATA-CT-TTTGTCATTTGTTTTAAGCAATTCCATAAGCT------TGTACATAGCCGTTTTTTGAAAAACATGTTTATTTA
gi|30 : GTACCGCCATT-T-TTCATTTACA--TTTA--A-----AGAAAGT-TC--TT--TT-TAATT------T-----T-TTT-TTA---T-TATCA---ATATCG-AAATAACGCA-TGAAA-A-ATTTTTTAAGTCATAA---ATTCA--T----AAAA-ATAAGAGGATGAAC-AAATT----TATTAAATATTTA-----AATGTT--T--------TTC--------TTTCAT-----TG------------G---T--------------TAAGT----------GA-A-A--T-G-TTTC----tatacatctttctaaaatcagatgtaaatag
gi|31 : T----ATTAAACAT----TTAAA-GTTCTGTTTCTTAATTTCGGAAAATGTT-TAATATAC------TGATCACATCCAACCA-TA--ATA-CT-TTTGTCATTTGATTTAAGCAACTTAATAAGCT------TGTATGTGGAAGGTCTTTGAAAAA
gi|32 : aT------T-----T-TTT-TTA---T-TATCA---ATATCG-AAATAATGCA-TGAAA-A-ATTTTTTAAGTCATAA---ATTCA--T----AAAA-ATAAGAGGATGAAC-AAATT----TATTAAATATTTA-----AATGAT--T--------TTC--------TGTCAT-----TG------------A---T--------------TAAGT----------GA-A-A--T-G-TTTC----CAA----AATTA-------GATAAA--AA-ATATT--CAC-T---ATAT-TTACATA-aagaagaagttaattgatatagacctttcttaaaacaag
gi|33 : -TTT-TAA---A-TATAA---ATATCG-AAATAATACA-AGATT-T-TTTTTTTAA-TTATTA---ATTTAAAG----AAGA-AAAAAAAGATTAAC-ACATT----TATTAAATATTAA-----AATGAT--TATTA----TTC--------TTTCAG-----TG------------
gi|34 : gccttatacataaatacgtatgGTACCGCCATT-T-TTCATTTACA--TTTA--A-----AGAAAAT-CC--------------------T-----T-TTT-TTA---T-TATCA---ATATCGAAAAAAATACA-TGAAA-A---TTTTTAAGTCATAA---ATTCA--T----TAAA---AAGAGGATGAAC-AAATT----TATTAAATATTTA-----AATGAT--ccaattgtttatttaaatttcagattacg
gi|36 : -TATCA---ATATCG-AAATAATGCA-TGCAA-A-TTTTTTTAAGTCATAA---ATTCA--T----AAAA-ATAAGAGGATGAAC-AAATT----TATTAAATATTTA-----AATGAT--T--------TTC--------TTTCAT-----TG------------A---T--------------TAAGT----------GA-A-A--T-G-TTTC----gatta
gi|37 : GTACCGCCATT-T-TTCATTTACA--TTTA--A-----AGTAAGT-TC----------A-TT------T-----T-ATT-TTA---T-TATCA---ATATCG-AAATAATGCC-TGAAA-A-A-AATTTAAGTCATAA---ATTCC--T----TAAA-ATAAAAAG
gi|4 : tGTACCGCCATT-T-TTCATTTACA--TTTA--A-----AGAAAGT-TC--TT--TT-TA-TT------T-----T-TTT-TTA---T-TATCA---ATATCG-AAATAATGCA-TGAAC-A-ATTTTTTAAGTCATAA---ATTCA--T----AAAA-ATAAGAGGATGAAC-AAATT----TATTTAATATTTA-----AATGAT--T--------TTC--------TTTCAT-----TG------------A---T--------------TAAGT----------GA-A-A--T-G-TTTC----CAA----AAATA-------GATAAA--AA-ATATT--CAA-T---ATAT-TTACATA-AACT----ATTAAACGT----TTAAA-ATGCTGTTTCTTAATTTCAGAGATTTCT-TAATATAC------TGAGCAAAACTGACTA-AA--ATA-CT-TTTATCATTTGTTTTAAGCAATTCCATAAGAT------TGTACATAGACGGTCTTTGAAAAACATGTTTATTTA
gi|40 : GTACCGCCTTT-T-TCCATTTACA--TTTA--A-----ACAAAGT-TC-------A-TA-TT------T-----T-
gi|5 : tGA----AAA-A-------AAT-TATTAA-ACATTGCCAAAT---ATATCTT---TG-AATTTCATACCAAACAT----TTAAA-ATATTATTTCTGAATTTCTGAGAACGTT-TAATATGC------TGAGCTAATCCGACTA-AA--ATATTT-TTTGTCATTTGATTTAAGCAATTCAATAGGCT------TGTATATGGAAGGTTTT----AAGCATAT
gi|6 : tagtactgtcatatttcattacatctaccatttgatatacattaaatgtttatttatattttagatatacatgtaaaagataatacaagaaataattttcaagttcttcaagaagaagaagaaaacgatGTACCGCCATT-T-TCCATTAACA--TTTT--A-----AGTAAAA-TC----------A-TT------T-----T-TAC-TTA---A-TATCA---AAATCG-AAATAATGCA-TGAAC-T-ACTTTTTA-GTCATAA---ATTCT--T----AAAA-ATAAGAGGATGAAC-AAATT----TATTAAATATTTA-----AATGAT--T--------TAC--------TTTCAC-----TGCCAACT------A---TATATACTTGGTATCTATGT----------AA-G-AGTT-GTTTTC----CGA----AAGTA-------GAT-AA--AATATATT--CAA-C---ATAT-TTATATA-AAAT----ATTAAACGT----TTAAA-ATGCTGTTTCTTAA----------CATTATCATA-AT------TAAGCCGATACGAATA-AACGAAA-CTGTTCATTATTTGGTTacagctcatcatcatacaaaatactta
gi|7 : t-TA-TT------TA----T-GTT-TTA---AATATAA---ATGTCA-AAATAATAAAACGAAA-T-ACTTTC-AATCCA-AA---GTGCA--TCTAGAAGA-AGAATAGAATGAAC-ACGTT----TATTAAACATTTA-----GA-------------------------------------TG------------A---T--------------TA--T----------GA------T-T-CTTC----C--------ATT-------GCC-AA--A-------------T---ACAT-GTATATA-G--------TTAAGCGTCACATTAAACATGTTATTTCTTATATTCAGAGAATGGT-TTATATAA------TGCGCAAGTCCAATTA-AA--ATG-GT-TTTCTCAATTGATTCAAGCAATTCAATAAGCT------T
gi|8 : tatatatattaaatatgGCCACTATATTCATCTACA--TTTA--A------GAAAAT-TC--TT--TT-T----------------T-TTA-TTA---T-TATCA----TATCG-ATATAATGCA-TGAAA-C-ATTTT-TAAGTCATAA---ATTCA--T----AAAA-ATAAAAGGATGAAC-AAATT----TATTAAATATTTA-----AATGAT--T--------TTC--------TTTCAT-----TG------------A---T--------------TAAGT----------G--A-A--T-G-TTTC----CAA----AAATA-------GAT-AA--AAGATATT--CAA-T---ATAT-TTACATA-AACT----ATTAAACGT----TTAAA-ATGCTTTTTCTTAATTTCAGAGATTTCT-TAATATAC------TGAGCAAAACTGACTA-GA--ATA-CT-TTTATCATTTGTTTTAAGCAATTctgttttcaatgcagtcgttaccgaagatatttac
gi|9 : AGAGGATGAAC-ACGTT----TGTTAAACATTTA-----AA-------------------------------------TG------------A---T--------------TA-GT-------------A-T--T-A-TTTC-------------ATT-------GCC-AA--A---TAT-----A-T---ATAT-----ATA-AATTTCACATTAAACAT----TTACA-ATGTTATTTCTTATATTCAGAGAACGTT-TTATATAC------TGAGCAAATCCGATTG-AA--ATAGAT-TTTGTCATTTTACTTAAAGAATT
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): ATTAGTTCCGTTAAAGTTATTTACCATTTGATATATCTTGAATATCAATTTATGTTTTAAATATAAATGTCAACAAATTACAAGAAATACTTTTCAATCCTCCGTTCTTCAAGATGAATAAGACTGACAATGAATACGTTTATCAAACATTTAAATGGTTATCATTTTTATTGCCAAATCAATATTTAAATTTCACATTAAACATTTTAAATCTTATTTCTTAAATTCAGATAACTTATTATATACGGA
Unaligned ( gi|35 ): TGTACCGTCATACTCCATTACCATTTGATATATAATAAATATTGATCTACGTTTTAAATATAAATGTCAAAATACTATAAAAAAATACTTTTTAAAGTTTTCAATCCAAAGTTCTTCAAGAAGAAGAAAATGGTGAC
Unaligned ( gi|38 ): TAGTACCGGCATATTTCATTACCTGTTGATATATGTATTTGGTTTTTATTTATGTTTTGAATATAAATGTAAAACTAGTATAATAAATACTTGAACTTTTTTAAGA
Unaligned ( gi|39 ): ATTTGTAACGCCATTTGCCATTAACATTTTAAGTAAATTCATTTACAATAATATAAATACCGAAAT
Alignments
lowQualScore : 22222222222222222222 11111111 2222222222222222222222222222222222222222222222222 22222 111111111 111111
lowQualScore : 1 1 1 22 222 33333 2 1 33333333333333333333 66666 1 2 88888 222 1 1 333 6 222 333 6666 1 1 2222 33333 11 66666666 66666666 33333 5555555555555555555555555555555555555555555555555 1 33 1 2 666666 3333 9999999 3 00000 22 2 333 2 777777777 5555 2 1 0 2 999999 3 44 6 3 1 666666 2 1 3
lowQualScore : . . . .. ... ..... . . .................... ..... . . ..... ... . . ... . ... ... .... . . .... ..... .. ........ ........ ..... ................................................. . .. . . ...... .... ....... . ..... .. . ... . ......... .... . . . . ...... . .. . . . ...... . . .
lowQualScore : 5 5 6 00 777 77777 4 5 44444444444444444444 00000 3 7 66666 222 2 2 999 4 222 222 6666 2 2 7777 11111 77 00000000 00000000 22222 4444444444444444444444444444444444444444444444444 4 44 4 9 444444 9999 5555555 8 88888 88 0 555 0 999999999 7777 7 8 1 9 666666 3 66 7 3 0 444444 5 0 2
consensus : GTACCGCCATT-T-TTCATTTACA--TTTA--A-----AGNAAGT-TC--TT--TT-TA-TT------T-----T-TTT-TTA---T-TATCA---ATATCG-AAATAATGCA-TGAAA-A-ATTTTTTAAGTCATAA---ATTCA--T----AAAA-ATAAGAGGATGAAC-AAATT----TATTAAATATTTA-----AATGAT--T--------TTC--------TTTCAT-----TG------------A---T--------------TAAGT----------GA-A-A--T-G-TTTC----CGA----AAATA-------GAT-AA--AA-ATATT--CAA-T---ATAT-TTACATA-AACT----ATTAAACGT----TTAAA-ATGCTGTTTCTTAATTTCAGAGAACGTT-TAATATAC------TGAGCAAATCCGACTA-AA--ATA-CT-TTTGTCATTTGATTTAAGCAATTCNATAAGCT------TGTACATGGACGGTCTTTGAAAAACATGTTTATTTA
Reference ( family-614 ) : GTACCGCCATT-T-TTCATTTACA--TTTA--A-----AGNAAGT-TC--TT--TT-TA-TT------T-----T-TTT-TTA---T-TATCA---ATATCG-AAATAATGCA-TGAAA-A-ATTTTTTAAGTCATAA---ATTCA--T----AAAA-ATAAGAGGATGAAC-AAATT----TATTAAATATTTA-----AATGAT--T--------TTC--------TTTCAT-----TG------------A---T--------------TAAGT----------GA-A-A--T-G-TTTC----CGA----AAATA-------GAT-AA--AA-ATATT--CAA-T---ATAT-TTACATA-AACT----ATTAAACGT----TTAAA-ATGCTGTTTCTTAATTTCAGAGAACGTT-TAATATAC------TGAGCAAATCCGACTA-AA--ATA-CT-TTTGTCATTTGATTTAAGCAATTCNATAAGCT------TGTACATGGACGGTCTTTGAAAAACATGTTTATTTA
gi|1 : GTACCGCCATT-T-TCCATTAACA--TTTT--A-----AGTAATT-TC--AT--TT-T--TT------T-----C-GTC-TTA---A-AATCA---AAATCA-AAATAATGCA-TGGAA-T-ATTTTCTAA-TCATCA---ACTCC--T----TAAA-ATAAGAGGACGAAC-TAATA----TATTAAATAGTTT-----AATGAT--T--------TTCC-------TTCCTT-----CA------------A---TGC------------CAACT----------TC-ATA--T-A-CTTTGCATCGACATCAAATTTTTTTCTGAT-AT--TG-ATATT--CAA-T---ATAT-TTACATA-TCAT----ATTAAACAT----TTAAA-ATGCTGTTTCTTAATTTCAGA--------TAA---AC------TGAGCAAATCCGACTA-TG--ATA-CT-TCTGTCATTTGATTTAAGCAATTCCATAAGCTTGTACATGTACATGGACGATCTTGGGAAAACATGTTTTTCTA
gi|10 : tGTACCATCATA-T-TTCATTACCA--TTTT--A-----TATATAT-TC----------A-TC------T-----T-TTT-TTAAAAG-TATTA---ATATTA-AAATTATACA-AGAAA-A-ACTTC--AAA-CATAA---GTTCC--TT---GAGA-ACAC----ATGTAC-GGGT------ATTAAATG----------ATGAC--T--------TTCATCACCAACTTTATATACTTGTC----------AGCTT--------------TATCT----------GA-G-A--TTG-TTTC----GTA----AAAAA-------GTT-AA--AATCTATT--CAA-T---ACA-----------A------GTTAAACAA----TGAAA-ACGCTGTTTCGTAATTTC----AACATT-TAaatacgtctttctaaactcactgttgcatggacagatgcaaataaaat
gi|11 : taGTACTGCCATT-T-TTCATTTACA--TTGT--A-----GGTAAAT-TC--AT--TT-T--TT------T-----T-ATA-TTA---T-TATCA---ATATCG-AAATAATGTA-TGAAA-A-ACATTT-AAGTCATAA---ATTCC--T----AAAA-ATAAGAGGACGAAA-AAAAT----TATTAAATATTTA-----AATGAT--G--------TTC--------TTTCAT-----TGCCA---------A---C--------------TA-------------GA-T-A--T-A-CTT------GA----ACATACTT----GAT-AA--TT-ATTTT--AAA-TTGAATGT-C-ATATA-AAC--------AGATAT----C--AA-ATTCCTTTTTTT--TTT--GGCAACGAT-TACGATTT------TG--TAACTCCGACTATAA--ATA-CT-taggtgaaataggtaaatagaaatattttt
gi|12 : tGTACCGCCATA-T-TTCATTACCA--CTTG--A-----TACATAT-TTAATA--TT-TA-TTAA----G-----G-TTT-TAA---A-TATAA---ATATCA-AAGTAATACA-AGAAA-T-ATTTTTCAATTC-TGA---TTTTT--T----CAAG-A--AGAGGATAAAC-ACATG----TTTTAAACATTTAATAATAATCAT--TA-------TTC--------TTTCAT-----TG-------------------------------------------------------------C----C------AACT---------AT-AA-------ATT--CAA-----A-GT-TCAC------------ATTAAACAA----TTAAA-GTGTTACTTCTCAATTTCAGAGAACGTT-TAATATTC------TGA-----------------------T-TCAGTCATTCGATTTAAACAATTCAATA
gi|14 : GTACCGCCATT-T-TCCATTATCA--TTTT--A-----AGTAAAT-TC--AT--TT-T----------T-----T-TTC-TTA---A-TATTG---ATATTG-AAATAATGCA-TGAAATA-ATTTTT--AGCCATAC---ATTCC--T----AAAA-GTAACAGGATGAAC-AAATT----TATTAAATGTTTA-----AATGAT--T--------TTC--------TTTCAC-----TGCCAACTTTATATA---T--------------TTGGCTTCTGCATCAGA-G-AT-T-G-TTTC----CGA----AAATA-------GAT-AA--AATATATT--CAA-T---ATAT-TTACATA-
gi|15 : ttGTACAGTCATA-T-TTCATTACCA--TTTA--T-----ATCAAATATG--TA--TT-TA---------T-----G-TTT-TAA---A-TATAA---ATGTCA-AAATGAT--A-TAAGA-A-ATTCT----GT---------TCTA--T----AAGA-AGAAATGGATGAAC-ACATT----TATTAAACATTTA-----AATGATAATTA------TTA--------TTTCAT-----T-----------------------------------GT----------CA-A-A--T-A-T-------------------------------------ATATT--TAA-------AT-TT-CATATCAC-----ATCAAACAT----TTAAA-TTTTTATTTCTTAATTTCAGAGAACGTT-TTATAT
gi|16 : taTACCGCCCCT-T-TTCATTTACA--TTTA--A-----ACAAAGT-TC--AT------ACTT------T-----T-TTT-TTA---T-TATCG---ATATCG-AAATAATGTA-TGAAA-A-ATTTTT-AAGTCATCA---ATTCA--T----AAAA-AT--GAGGATAATC-AAATT----TATTAAGTATTTA-----AATGAT--T--------TTC--------TTTCAT-----TG------------A---T--------------TAAGT----------G--A-A--T-G-TTTC----CAA----AAATA-------GAT-AA--AACATATT--CAA-T---ATAT-TTACATA-AATT----ATTAA
gi|17 : TACCGCCATT-T-TCAATTAACA--TTTT--A-----AATTAAT-TCA-TT--GT-TG-TT------T-----T-TTT----------ATCA---ATATTG-AAATAATGCA-TGAAA-T-ACTTAT-AAGTCATAA---ATCCC--T----TAAA-ATAAGAGAATGAACAAAATTAATATATCAAATATTTA-----AATGAG--A--------TTA--------TTTTAT-----TA------------A---T--------------TCAGA----------G--A-T--T-G-TTTC----CGA----AAATA-------GAT-AA--AAGACATT--CAA-T---ATAT-TTACAT
gi|18 : tGTAGCGTCATA-T-TTCATTACCA--TTTG--A-----TATATAT-TA--TACATT-TG-TT------T-----TATTT-TTA---AATATAA---ATATCA-AAATAATACA-AGAAA-T-ACTTTTTAATTC-TAA---GTTCT--T----------CAAGAAGATGAAC-ACGTT----TATTAAACATTAA-----AATGAT--TATGTATGATTC--------TTT-GT-----TG------------A-------------------AAGT-----------A-A-C--T-A-TTTt
gi|19 : tta---T-TATTA---ATATCG-AAATAATGCA-TGAAA-C-ATTTTT-AAGACAAAA---AATCA--T----AAAA-GTAAGAGGATGAAC-AAATT----TATTAAATATTTA-----AATGAT--T--------TTC--------TTTCAT-----TG------------A---T--------------TAAGT----------G--A-A--T-G-TTTC----CAA----AAATA-------GAT-AA--AA-G-ATT--CAA-T---GTAT-TTACATA-AACT----ATTAAACGT----TTTAA-ATGCTGTTTCTTAATTTCAGAGAtacaatttggcctgcagagcacgtttt
gi|2 : GTACCACCATT-T-CCCATTAACA--TTTT--A-----AGTAAAT-TC----------A-GT------T-----A-TTT-TTA---A-TATCA---ATATCA-AAATAATGCA-TGAAA-T-ACTTTTTA-GTCATAA---ATTCC--T----AAAA-ATAAAAGAATGAAC-AAATT----TATTAAATATTTA-----AATGAT--T--------TAC--------TTTTAT-----TGCCAACTATATATA---T--------------TTGGTATCTATGTCAGA-G-A--T-GGTTTC----TGA----AAATA-------GAT-A---------TT--CAA-T---AGAT-TTACATGTAATT----TTTAA-CAT----TTAAA-ATGCTGTTTCTTAATTTCCGAGATTGTT-TAATATACATGTACTGAGCAAATCCAACTC-AA--ATA-CT-TTTGTCATTTGATTTAAGCAATTTCATAAGCT------TGTACA-----------TGAAAAACAAATTTATTTAtttc
gi|20 : tATT-T-TTCATTTATA--TTTT--A-----AGTAAGT-TC--AT--AT-AA-TT------T-----T-TT-----------AACA---ATATCG-AAATAATGCA-TGCAA-A-ATTTT--AAGTCATAA---ATTCC--T----AAAAAATAAGAGGATGAAC-AAATT----TATTAAATATTTG-----AATGAT--T--------TTC--------TTTCAT-----TG------------A---T--------------TCA------------GATA-T--T-G-TTTT----CAA----AAATA-------GAT-AA--AAGATATT--CAA-T---ATAT-TTACATA-Atatgcatctttctaaaatcactgtcga
gi|21 : caGTACCGCCATT-T-TTCATTTACA--TTTA--A-----AGAAAGT-TC--TT--TT-TA-TT------TATTATT-TTT-TTA---T-TATCA---ATATCG-AAATAATGCA-TGAAA-T-TTTTTTTAAGTCACAA---ATTCA--T----AAAA-ATAAGAGGATGAAC-AAATT----TATTAAATATTTA-----AATGAT--T--------TTC--------TTTCAT-----TG------------A---T--------------TAAGT----------GA-A-A--T-G-TTTC----CAA----AAATT-------GAT-
gi|22 : GTACCACCATA-T-TTCATTAACA--TTTA--A-----AGAAAGT-TC--TC--TT-T------------------TTT-TTA---T-TATCA---ATATCG-AAATAATGCA-TGAAA-C-A-TTTTTAAGTCATGA---ATTCA--T----AAAA-ATAAG--------------------ATTAAACATTTA-----AATGAG--T--------TTC--------TTTCAT-----TG------------A---T--------------TAAGT----------G--A-A--T-G-TTTC----AAA----AAATA-------GAT-AA--AATATATT--CAT-T---TTAT-TTACATA-
gi|23 : -TA-TT------TA----T-GTT-TTA---AATATAA---ATGTCT-GAATAATGTA-AGAAA-T-CCTTTTCGA-TCTTAAGTTATTCAA-G----AAGA-AGAAGAGGATGGAA-ACGTT----TATTAAACATTAA-----TATGAT--TATTA----TTC--------GTTCAT-----TG------------
gi|24 : ttgatttatgttaaatgtgGTACCACCATT-T-TTCATTTACA--TTTA--A-----AGAAAGT-TC--TT--TT-TA-TTATTTTTT-----T-TTTATTA---T-TATCA---ATATCG-AAATAATGCA-TGCAA-A-TTTTTTTAAGTCATAA---ATTCA--T----AAAA-ATAAGAGGATGGAC-AAATT----TATTAAATATTTA-----AATGAT--T--------TTC--------TTTCAT-----TG------------A---T--------------TAAGT----------GA-A-A--T-G-TTTtaaacatatacctaaatttcaccttaaacatttaca
gi|25 : GTACCGCCATT-T-TTCATTTACA--TTTA--A-----AGAAAGT-TC--TT--TT-TA-TTATTT--T-----T-TTT-TTA---T-TATCATCAATATCG-AAATAATGCA-TGCAA-A-TTTTTTTAAGTAATCA---ATTCA--T----AAAA-ATAAGAGGATGAAC-AAATT----TATTAAATATTTA-----AATGA---T--------TTC--------TTTCAT-----TG------------A---T--------------TAAGT----------GA-A-A--T-G-TTTC----
gi|26 : GTACCGCCATT-T-TTCATTTACA--TTTA--A-----AGAAAGT-TC--TT--TT-TA-TTATTTT-T-----T-TTTATTA---T-TATCA---ATATCG-AAATAATGCA-TGCAA-A-TTTTTTTAAGTCATAA---ATTCA--T----AAAA-ATAAGAGGATGAAC-AAATT----TATTAAATATTTA-----AATGAT--T--------TTC--------TTTCAT-----TG------------A---T--------------TAAGT----------GA-A-A--T-G-TTTC----
gi|27 : GTACAGCCATT-T-TTCATTTACA--TTTA--A-----AGTAAGT-TC--AT--ATATA-TT------T-----C-TT----A---T-TATCA---ATATAG-AAATAATGCA-TGAAA-A-ACTTTT-AAGTCATAA---ATTCA--T----AAAA-ATAAGAGGATGAAC-AAGTT----TATTAAATATTTA-----AATGAT--T--------TTC--------TTTCAT-----TG------------A---T--------------TAAGA----------G--A-A--T-G-TTTC----CAA----AAA
gi|28 : GTACCGTTATA-T-TTCAATAACA--TTTC--ATATATATTAAAT-AG--TTA-TT-TA-TG------T-----T-TTA---A---A-TATAA---ACGTCA-AAATAAT--A-TAAAT-ATACTTTTTCAATCCCAA---GTTAA--TCAAGAAGA-AGAAGAAGATGAAC-ATGTT----TATTGAATATTTA-----AATGAT--TATTA----TTC--------TTTCAT-----TG------------
gi|29 : aaGTACCGCCATT-T-TTCATTTACA--TTTA--A-----AGAAAGT-TC--TT--TT-TAATT------T-----T-TTT-TTA---T-TATCA---ATATCG-AAATAACGCA-TGAAA-A-ATTTTTTAAGTCATAA---ATTCA--T----AAAA-ATAAGAGGATGAAC-AAATT----TATTAAATATTTA-----AATGTT--T--------TTC--------TTTCAT-----TG------------G---T--------------TAAGT----------GA-A-A--T-G-TTTC----ccaca
gi|3 : GTACTGCAATT-T-TTCATTTACAGTTTTAGTA-----AG-ACGG-TC--CT--TA-TA-CT------T-----T-TT----A---T-TATTA---ATATTG-AAATAATACA-CGAAA-A-ACTTTT-GAGTAATAA---ATTCC--T----AAAA-AAAAGAGGATGAAC-AAATT----TATTAAATATTTA-----AATGAT--T--------TTC--------TCTCAT-----TG------------A---T--------------TCAGA----------G--A-T--T-G-TTTC----CAA----AAATA-------GAT-AA--AAGATATT--CAG-T---ATAT-TTTCATA-ACCT----ATTAAAAGT----TTAAA-ACGCTGTTTCTTAATTTCAGAGATTTTT-TAATTTAC------TGAACAAATTTGACTA-AA--ATA-CT-TTTGTCATTTGTTTTAAGCAATTCCATAAGCT------TGTACATAGCCGTTTTTTGAAAAACATGTTTATTTA
gi|30 : GTACCGCCATT-T-TTCATTTACA--TTTA--A-----AGAAAGT-TC--TT--TT-TAATT------T-----T-TTT-TTA---T-TATCA---ATATCG-AAATAACGCA-TGAAA-A-ATTTTTTAAGTCATAA---ATTCA--T----AAAA-ATAAGAGGATGAAC-AAATT----TATTAAATATTTA-----AATGTT--T--------TTC--------TTTCAT-----TG------------G---T--------------TAAGT----------GA-A-A--T-G-TTTC----tatacatctttctaaaatcagatgtaaatag
gi|31 : T----ATTAAACAT----TTAAA-GTTCTGTTTCTTAATTTCGGAAAATGTT-TAATATAC------TGATCACATCCAACCA-TA--ATA-CT-TTTGTCATTTGATTTAAGCAACTTAATAAGCT------TGTATGTGGAAGGTCTTTGAAAAA
gi|32 : aT------T-----T-TTT-TTA---T-TATCA---ATATCG-AAATAATGCA-TGAAA-A-ATTTTTTAAGTCATAA---ATTCA--T----AAAA-ATAAGAGGATGAAC-AAATT----TATTAAATATTTA-----AATGAT--T--------TTC--------TGTCAT-----TG------------A---T--------------TAAGT----------GA-A-A--T-G-TTTC----CAA----AATTA-------GATAAA--AA-ATATT--CAC-T---ATAT-TTACATA-aagaagaagttaattgatatagacctttcttaaaacaag
gi|33 : -TTT-TAA---A-TATAA---ATATCG-AAATAATACA-AGATT-T-TTTTTTTAA-TTATTA---ATTTAAAG----AAGA-AAAAAAAGATTAAC-ACATT----TATTAAATATTAA-----AATGAT--TATTA----TTC--------TTTCAG-----TG------------
gi|34 : gccttatacataaatacgtatgGTACCGCCATT-T-TTCATTTACA--TTTA--A-----AGAAAAT-CC--------------------T-----T-TTT-TTA---T-TATCA---ATATCGAAAAAAATACA-TGAAA-A---TTTTTAAGTCATAA---ATTCA--T----TAAA---AAGAGGATGAAC-AAATT----TATTAAATATTTA-----AATGAT--ccaattgtttatttaaatttcagattacg
gi|36 : -TATCA---ATATCG-AAATAATGCA-TGCAA-A-TTTTTTTAAGTCATAA---ATTCA--T----AAAA-ATAAGAGGATGAAC-AAATT----TATTAAATATTTA-----AATGAT--T--------TTC--------TTTCAT-----TG------------A---T--------------TAAGT----------GA-A-A--T-G-TTTC----gatta
gi|37 : GTACCGCCATT-T-TTCATTTACA--TTTA--A-----AGTAAGT-TC----------A-TT------T-----T-ATT-TTA---T-TATCA---ATATCG-AAATAATGCC-TGAAA-A-A-AATTTAAGTCATAA---ATTCC--T----TAAA-ATAAAAAG
gi|4 : tGTACCGCCATT-T-TTCATTTACA--TTTA--A-----AGAAAGT-TC--TT--TT-TA-TT------T-----T-TTT-TTA---T-TATCA---ATATCG-AAATAATGCA-TGAAC-A-ATTTTTTAAGTCATAA---ATTCA--T----AAAA-ATAAGAGGATGAAC-AAATT----TATTTAATATTTA-----AATGAT--T--------TTC--------TTTCAT-----TG------------A---T--------------TAAGT----------GA-A-A--T-G-TTTC----CAA----AAATA-------GATAAA--AA-ATATT--CAA-T---ATAT-TTACATA-AACT----ATTAAACGT----TTAAA-ATGCTGTTTCTTAATTTCAGAGATTTCT-TAATATAC------TGAGCAAAACTGACTA-AA--ATA-CT-TTTATCATTTGTTTTAAGCAATTCCATAAGAT------TGTACATAGACGGTCTTTGAAAAACATGTTTATTTA
gi|40 : GTACCGCCTTT-T-TCCATTTACA--TTTA--A-----ACAAAGT-TC-------A-TA-TT------T-----T-
gi|5 : tGA----AAA-A-------AAT-TATTAA-ACATTGCCAAAT---ATATCTT---TG-AATTTCATACCAAACAT----TTAAA-ATATTATTTCTGAATTTCTGAGAACGTT-TAATATGC------TGAGCTAATCCGACTA-AA--ATATTT-TTTGTCATTTGATTTAAGCAATTCAATAGGCT------TGTATATGGAAGGTTTT----AAGCATAT
gi|6 : tagtactgtcatatttcattacatctaccatttgatatacattaaatgtttatttatattttagatatacatgtaaaagataatacaagaaataattttcaagttcttcaagaagaagaagaaaacgatGTACCGCCATT-T-TCCATTAACA--TTTT--A-----AGTAAAA-TC----------A-TT------T-----T-TAC-TTA---A-TATCA---AAATCG-AAATAATGCA-TGAAC-T-ACTTTTTA-GTCATAA---ATTCT--T----AAAA-ATAAGAGGATGAAC-AAATT----TATTAAATATTTA-----AATGAT--T--------TAC--------TTTCAC-----TGCCAACT------A---TATATACTTGGTATCTATGT----------AA-G-AGTT-GTTTTC----CGA----AAGTA-------GAT-AA--AATATATT--CAA-C---ATAT-TTATATA-AAAT----ATTAAACGT----TTAAA-ATGCTGTTTCTT----------AACATTATCATA-AT------TAAGCCGATACGAATA-AACGAAA-CTGTTCATTATTTGGTTacagctcatcatcatacaaaatactta
gi|7 : t-TA-TT------TA----T-GTT-TTA---AATATAA---ATGTCA-AAATAATAAAACGAAA-T-ACTTTC-AATCCA-AA---GTGCA--TCTAGAAGA-AGAATAGAATGAAC-ACGTT----TATTAAACATTTA-----GA-------------------------------------TG------------A---T--------------TA--T----------GA------T-T-CTTC----C--------ATT-------GCC-AA--A-------------T---ACAT-GTATATA-G--------TTAAGCGTCACATTAAACATGTTATTTCTTATATTCAGAGAATGGT-TTATATAA------TGCGCAAGTCCAATTA-AA--ATG-GT-TTTCTCAATTGATTCAAGCAATTCAATAAGCT------T
gi|8 : tatatatattaaatatgGCCACTATATTCATCTACA--TTTA--A------GAAAAT-TC--TT--TT-T----------------T-TTA-TTA---T-TATCA----TATCG-ATATAATGCA-TGAAA-C-ATTTT-TAAGTCATAA---ATTCA--T----AAAA-ATAAAAGGATGAAC-AAATT----TATTAAATATTTA-----AATGAT--T--------TTC--------TTTCAT-----TG------------A---T--------------TAAGT----------G--A-A--T-G-TTTC----CAA----AAATA-------GAT-AA--AAGATATT--CAA-T---ATAT-TTACATA-AACT----ATTAAACGT----TTAAA-ATGCTTTTTCTTAATTTCAGAGATTTCT-TAATATAC------TGAGCAAAACTGACTA-GA--ATA-CT-TTTATCATTTGTTTTAAGCAATTctgttttcaatgcagtcgttaccgaagatatttac
gi|9 : AGAGGATGAAC-ACGTT----TGTTAAACATTTA-----AA-------------------------------------TG------------A---T--------------TA-GT-------------A-T--T-A-TTTC-------------ATT-------GCC-AA--A---TAT-----A-T---ATAT-----ATA-AATTTCACATTAAACAT----TTACA-ATGTTATTTCTTATATTCAGAGAACGTT-TTATATAC------TGAGCAAATCCGATTG-AA--ATAGAT-TTTGTCATTTTACTTAAAGAATT
blockSeqs : A A A GT AGT TATAT T A TTTTTATTATTTTT ATTAT A A AAAG TCA A A TA C GTT AAA CAAG A A AATA ATAAT AA ATGTATGA ATCACCAA ATACT CCAACTTTATATATTTGGCTTCTGCATCAGA . GT T G GT . CTT A TTAA GC A TGA C AATTTCAT CACA C A A ATGTAC T CG T G A . C T T
blockSeqs : . . T . T . T . TTTTTATTATTTT A . A AA . . . AT T . AA CTAG . . . . . ATTA . . CCAACTATATATATTTGGTATCTATGTCAGA . T . T CG . . A AAT . . . . AATTTCAC . . A . . . . G . C . A G T
blockSeqs : . . A . T . C . AATATTTATTAA A . . AA . . . A T . C T . . . . . ATTA . . CCAACTATATATACTTGGTATCTATGTAA . . . . CA . . . AAT . . . . TAATT . . A . . . . . . C . C G T
blockSeqs : . . A . G . T . TTTTTATTATTT . . . AA . . . A T . C . . . . . . ATTA . . TCAGCTTTATCTGA . . . . CG . . . AAC . . . . TCAC . . C . . . . . . A . A G T
blockSeqs : . . A . T . C . TACATTTGTT . . . T . . . T T . T . . . . . . TA . . CCAACTAGA . . . . CA . . . AAG . . . . AATT . . A . . . . . . C . . . .
blockSeqs : . . T . A . A . ATTGTTGTT . . . A . . . A C . C . . . . . . A . . ATTAAGTGA . . . . TG . . . AAG . . . . AACT . . G . . . . . . A .
blockSeqs : . . A . A . T . ATATATATT . . . A . . . A T . A . . . . . . . . . ATTAAGTGA . . . . CA . . . AAT . . . . ACCT . . A . . . . . . A
blockSeqs : . . A . T . T . TTATTTATG . . . A . . . T T . A . . . . . . . . . ATTAAGTGA . . . . CA . . . AAG . . . . AACT . . T . . . . . .
blockSeqs : . . A . G . T . TTTTTAATT . . . T . . . T T . C . . . . . . . . . ATTAAGTGA . . . . AA . . . AAT . . . . AAAT . . A . . . . . .
blockSeqs : . . T . T . T . TTTTTAATT . . . T . . . C T . T . . . . . . . . . GTTAAGTGA . . . . CA . . . AAG . . . . AACT . . A . . . . . .
blockSeqs : . . T . T . A . ATATAATT . . . A . . . T T . A . . . . . . . . . GTTAAGTGA . . . . CA . . . TT . . . . AAC . . A . . . . . .
blockSeqs : . . A . A . A . TTTTTATT . . . T . . . A T . C . . . . . . . . . ATTAAGTGA . . . . CA . . . AA . . . . A . . . .
blockSeqs : . . T . A . A . CTTATACT . . . T . . . T T . C . . . . . . . . . ATTAAGTGA . . . . CA . . . AA . . . . G . . . .
blockSeqs : . . T . A . A . TTTTTATT . . . T . . . C T . A . . . . . . . . . ATTAAGTGA . . . . CG . . . AA . . . . . . . .
blockSeqs : . . T . A . A . ATTTTTT . . . T . . . T T . A . . . . . . . . . ATTAAGTG . . . . CA . . . A . . . .
blockSeqs : . . T . A . T . TATTTA . . . T . . . A T . A . . . . . . . . . ATTCAGAG . . . . G . . . A . . . .
blockSeqs : . . A . A . T . ATACTT . . . T . . . A T . A . . . . . . . . . ATTAAGTG . . . . C . . . . . . . .
blockSeqs : . . T . C . A . ATTTT . . . A . . . A T . A . . . . . . . . . ATTCAGAT . . . . C . . . . . . . .
blockSeqs : . . T . A . A . TCTTT . . . T . . . A T . A . . . . . . . . . ATTAAGTG . . . . . . . . . . . . .
blockSeqs : . . T . A . A . ATATT . . . T . . . A T . A . . . . . . . . . ATTAAGAG . . . . . . . .
blockSeqs : . . T . A . T . TTTTT . . . T . . . A . . A . . . . . . . . . ATTCAGAG . . . . .
blockSeqs : . . T . A . A . ATC . . . T . . . A . . C . . . . . . . . . ATTAAGTG . . . .
blockSeqs : . . T . A . A . AGT . . . A . . . A . . A . . . . . . . . . ATTATGA . . . .
blockSeqs : . . T . A . T . ATT . . . T . . . T . . A . . . . . . . . . AAAGTA . . . .
blockSeqs : . . A . T . A . ATT . . . T . . . A . . A . . . . . . . . . ATTAGT . . . .
blockSeqs : . . T . A . . . . . . . T . . . A . . A . . . . . . . . . GTCA . . . .
blockSeqs : . . . A . . . A . . C . . . . . . . . . . . . . .
blockSeqs : . . . T . . . A . . A . . . . . . . . .
blockSeqs : . . . . . . . T . . T . . . . . . . . .
blockSeqs : . . . . . T . . A . . . . . . . . .
blockSeqs : . . . C . . A . . . . . .
blockSeqCons : TTTTTATT************ ******** ATTAAGTGA**************************************** CG**** **** ******* AA*** ******
originalCons : GTACCGCCATT-T-TTCATTTACA--TTTA--A-----AGNAAGT-TC--TT--TT-TA-TT------T-----T-TTT-TTA---T-TATCA---ATATCG-AAATAATGCA-TGAAA-A-ATTTTTTAAGTCATAA---ATTCA--T----AAAA-ATAAGAGGATGAAC-AAATT----TATTAAATATTTA-----AATGAT--T--------TTC--------TTTCAT-----TG------------A---T--------------TAAGT----------GA-A-A--T-G-TTTC----CGA----AAATA-------GAT-AA--AA-ATATT--CAA-T---ATAT-TTACATA-AACT----ATTAAACGT----TTAAA-ATGCTGTTTCTTAATTTCAGAGAACGTT-TAATATAC------TGAGCAAATCCGACTA-AA--ATA-CT-TTTGTCATTTGATTTAAGCAATTCNATAAGCT------TGTACATGGACGGTCTTTGAAAAACATGTTTATTTA
finalCons : GTACCGCCATT-T-TTCATTTACA--TTTA--A-----AGNAAGT-TCTTTTTATT------------T-----T-TTT-TTA---T-TATCA---ATATCG-AAATAATGCA-TGAAA-A-ATTTTTTAAGTCATAA---ATTCA--T----AAAA-ATAAGAGGATGAAC-AAATT----TATTAAATATTTA-----AATGAT--T--------TTC--------TTTCAT-----TGATTAAGTGA----------------------------------------A-A--T-G-TTTCCG----A----AAATA-------GAT-AAAA---ATATT--CAA-T---ATAT-TTACATA-AACT----ATTAAACGT----TTAAA-ATGCTGTTTCTTAATTTCAGAGAACGTT-TAATATAC------TGAGCAAATCCGACTA-AA--ATA-CT-TTTGTCATTTGATTTAAGCAATTCNATAAGCT------TGTACATGGACGGTCTTTGAAAAACATGTTTATTTA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): ATTAGTTCCGTTAAAGTTATTTACCATTTGATATATCTTGAATATCAATTTATGTTTTAAATATAAATGTCAACAAATTACAAGAAATACTTTTCAATCCTCCGTTCTTCAAGATGAATAAGACTGACAATGAATACGTTTATCAAACATTTAAATGGTTATCATTTTTATTGCCAAATCAATATTTAAATTTCACATTAAACATTTTAAATCTTATTTCTTAAATTCAGATAACTTATTATATACGGA
Unaligned ( gi|35 ): TGTACCGTCATACTCCATTACCATTTGATATATAATAAATATTGATCTACGTTTTAAATATAAATGTCAAAATACTATAAAAAAATACTTTTTAAAGTTTTCAATCCAAAGTTCTTCAAGAAGAAGAAAATGGTGAC
Unaligned ( gi|38 ): TAGTACCGGCATATTTCATTACCTGTTGATATATGTATTTGGTTTTTATTTATGTTTTGAATATAAATGTAAAACTAGTATAATAAATACTTGAACTTTTTTAAGA
Unaligned ( gi|39 ): ATTTGTAACGCCATTTGCCATTAACATTTTAAGTAAATTCATTTACAATAATATAAATACCGAAAT
Alignments
lowQualScore : 22222222222222222222 11111111 2222222222222222222222222222222222222222222222222 22222 111111111 111111
lowQualScore : 1 1 1 22 222 33333 2 1 33333333333333333333 66666 1 2 88888 222 1 1 333 6 222 333 6666 1 1 2222 33333 11 66666666 66666666 33333 5555555555555555555555555555555555555555555555555 1 33 1 2 666666 3333 9999999 3 00000 22 2 333 2 777777777 5555 2 1 0 2 999999 3 44 6 3 1 666666 2 1 3
lowQualScore : . . . .. ... ..... . . .................... ..... . . ..... ... . . ... . ... ... .... . . .... ..... .. ........ ........ ..... ................................................. . .. . . ...... .... ....... . ..... .. . ... . ......... .... . . . . ...... . .. . . . ...... . . .
lowQualScore : 5 5 6 00 777 77777 4 5 44444444444444444444 00000 3 7 66666 222 2 2 999 4 222 222 6666 2 2 7777 11111 77 00000000 00000000 22222 4444444444444444444444444444444444444444444444444 4 44 4 9 444444 9999 5555555 8 88888 88 0 555 0 999999999 7777 7 8 1 9 666666 3 66 7 3 0 444444 5 0 2
consensus : GTACCGCCATT-T-TTCATTTACA--TTTA--A-----AGNAAGT-TC--TT--TT-TA-TT------T-----T-TTT-TTA---T-TATCA---ATATCG-AAATAATGCA-TGAAA-A-ATTTTTTAAGTCATAA---ATTCA--T----AAAA-ATAAGAGGATGAAC-AAATT----TATTAAATATTTA-----AATGAT--T--------TTC--------TTTCAT-----TG------------A---T--------------TAAGT----------GA-A-A--T-G-TTTC----CGA----AAATA-------GAT-AA--AA-ATATT--CAA-T---ATAT-TTACATA-AACT----ATTAAACGT----TTAAA-ATGCTGTTTCTTAATTTCAGAGAACGTT-TAATATAC------TGAGCAAATCCGACTA-AA--ATA-CT-TTTGTCATTTGATTTAAGCAATTCNATAAGCT------TGTACATGGACGGTCTTTGAAAAACATGTTTATTTA
Reference ( family-614 ) : GTACCGCCATT-T-TTCATTTACA--TTTA--A-----AGNAAGT-TC--TT--TT-TA-TT------T-----T-TTT-TTA---T-TATCA---ATATCG-AAATAATGCA-TGAAA-A-ATTTTTTAAGTCATAA---ATTCA--T----AAAA-ATAAGAGGATGAAC-AAATT----TATTAAATATTTA-----AATGAT--T--------TTC--------TTTCAT-----TG------------A---T--------------TAAGT----------GA-A-A--T-G-TTTC----CGA----AAATA-------GAT-AA--AA-ATATT--CAA-T---ATAT-TTACATA-AACT----ATTAAACGT----TTAAA-ATGCTGTTTCTTAATTTCAGAGAACGTT-TAATATAC------TGAGCAAATCCGACTA-AA--ATA-CT-TTTGTCATTTGATTTAAGCAATTCNATAAGCT------TGTACATGGACGGTCTTTGAAAAACATGTTTATTTA
gi|1 : GTACCGCCATT-T-TCCATTAACA--TTTT--A-----AGTAATT-TC--AT--TT-T--TT------T-----C-GTC-TTA---A-AATCA---AAATCA-AAATAATGCA-TGGAA-T-ATTTTCTAA-TCATCA---ACTCC--T----TAAA-ATAAGAGGACGAAC-TAATA----TATTAAATAGTTT-----AATGAT--T--------TTCC-------TTCCTT-----CA------------A---TGC------------CAACT----------TC-ATA--T-A-CTTTGCATCGACATCAAATTTTTTTCTGAT-AT--TG-ATATT--CAA-T---ATAT-TTACATA-TCAT----ATTAAACAT----TTAAA-ATGCTGTTTCTTAATTTCAGA--------TAA---AC------TGAGCAAATCCGACTA-TG--ATA-CT-TCTGTCATTTGATTTAAGCAATTCCATAAGCTTGTACATGTACATGGACGATCTTGGGAAAACATGTTTTTCTA
gi|10 : tGTACCATCATA-T-TTCATTACCA--TTTT--A-----TATATAT-TC----------A-TC------T-----T-TTT-TTAAAAG-TATTA---ATATTA-AAATTATACA-AGAAA-A-ACTTC--AAA-CATAA---GTTCC--TT---GAGA-ACAC----ATGTAC-GGGT------ATTAAATG----------ATGAC--T--------TTCATCACCAACTTTATATACTTGTC----------AGCTT--------------TATCT----------GA-G-A--TTG-TTTC----GTA----AAAAA-------GTT-AA--AATCTATT--CAA-T---ACA-----------A------GTTAAACAA----TGAAA-ACGCTGTTTCGTAATTTC----AACATT-TAaatacgtctttctaaactcactgttgcatggacagatgcaaataaaat
gi|11 : taGTACTGCCATT-T-TTCATTTACA--TTGT--A-----GGTAAAT-TC--AT--TT-T--TT------T-----T-ATA-TTA---T-TATCA---ATATCG-AAATAATGTA-TGAAA-A-ACATTT-AAGTCATAA---ATTCC--T----AAAA-ATAAGAGGACGAAA-AAAAT----TATTAAATATTTA-----AATGAT--G--------TTC--------TTTCAT-----TGCCA---------A---C--------------TA-------------GA-T-A--T-A-CTT------GA----ACATACTT----GAT-AA--TT-ATTTT--AAA-TTGAATGT-C-ATATA-AAC--------AGATAT----C--AA-ATTCCTTTTTTT--TTT--GGCAACGAT-TACGATTT------TG--TAACTCCGACTATAA--ATA-CT-taggtgaaataggtaaatagaaatattttt
gi|12 : tGTACCGCCATA-T-TTCATTACCA--CTTG--A-----TACATAT-TTAATA--TT-TA-TTAA----G-----G-TTT-TAA---A-TATAA---ATATCA-AAGTAATACA-AGAAA-T-ATTTTTCAATTC-TGA---TTTTT--T----CAAG-A--AGAGGATAAAC-ACATG----TTTTAAACATTTAATAATAATCAT--TA-------TTC--------TTTCAT-----TG-------------------------------------------------------------C----C------AACT---------AT-AA-------ATT--CAA-----A-GT-TCAC------------ATTAAACAA----TTAAA-GTGTTACTTCTCAATTTCAGAGAACGTT-TAATATTC------TGA-----------------------T-TCAGTCATTCGATTTAAACAATTCAATA
gi|14 : GTACCGCCATT-T-TCCATTATCA--TTTT--A-----AGTAAAT-TC--AT--TT-T----------T-----T-TTC-TTA---A-TATTG---ATATTG-AAATAATGCA-TGAAATA-ATTTTT--AGCCATAC---ATTCC--T----AAAA-GTAACAGGATGAAC-AAATT----TATTAAATGTTTA-----AATGAT--T--------TTC--------TTTCAC-----TGCCAACTTTATATA---T--------------TTGGCTTCTGCATCAGA-G-AT-T-G-TTTC----CGA----AAATA-------GAT-AA--AATATATT--CAA-T---ATAT-TTACATA-
gi|15 : ttGTACAGTCATA-T-TTCATTACCA--TTTA--T-----ATCAAATATG--TA--TT-TA---------T-----G-TTT-TAA---A-TATAA---ATGTCA-AAATGAT--A-TAAGA-A-ATTCT----GT---------TCTA--T----AAGA-AGAAATGGATGAAC-ACATT----TATTAAACATTTA-----AATGATAATTA------TTA--------TTTCAT-----T-----------------------------------GT----------CA-A-A--T-A-T-------------------------------------ATATT--TAA-------AT-TT-CATATCAC-----ATCAAACAT----TTAAA-TTTTTATTTCTTAATTTCAGAGAACGTT-TTATAT
gi|16 : taTACCGCCCCT-T-TTCATTTACA--TTTA--A-----ACAAAGT-TC--AT------ACTT------T-----T-TTT-TTA---T-TATCG---ATATCG-AAATAATGTA-TGAAA-A-ATTTTT-AAGTCATCA---ATTCA--T----AAAA-AT--GAGGATAATC-AAATT----TATTAAGTATTTA-----AATGAT--T--------TTC--------TTTCAT-----TG------------A---T--------------TAAGT----------G--A-A--T-G-TTTC----CAA----AAATA-------GAT-AA--AACATATT--CAA-T---ATAT-TTACATA-AATT----ATTAA
gi|17 : TACCGCCATT-T-TCAATTAACA--TTTT--A-----AATTAAT-TCA-TT--GT-TG-TT------T-----T-TTT----------ATCA---ATATTG-AAATAATGCA-TGAAA-T-ACTTAT-AAGTCATAA---ATCCC--T----TAAA-ATAAGAGAATGAACAAAATTAATATATCAAATATTTA-----AATGAG--A--------TTA--------TTTTAT-----TA------------A---T--------------TCAGA----------G--A-T--T-G-TTTC----CGA----AAATA-------GAT-AA--AAGACATT--CAA-T---ATAT-TTACAT
gi|18 : tGTAGCGTCATA-T-TTCATTACCA--TTTG--A-----TATATAT-TA--TACATT-TG-TT------T-----TATTT-TTA---AATATAA---ATATCA-AAATAATACA-AGAAA-T-ACTTTTTAATTC-TAA---GTTCT--T----------CAAGAAGATGAAC-ACGTT----TATTAAACATTAA-----AATGAT--TATGTATGATTC--------TTT-GT-----TG------------A-------------------AAGT-----------A-A-C--T-A-TTTt
gi|19 : tta---T-TATTA---ATATCG-AAATAATGCA-TGAAA-C-ATTTTT-AAGACAAAA---AATCA--T----AAAA-GTAAGAGGATGAAC-AAATT----TATTAAATATTTA-----AATGAT--T--------TTC--------TTTCAT-----TG------------A---T--------------TAAGT----------G--A-A--T-G-TTTC----CAA----AAATA-------GAT-AA--AA-G-ATT--CAA-T---GTAT-TTACATA-AACT----ATTAAACGT----TTTAA-ATGCTGTTTCTTAATTTCAGAGAtacaatttggcctgcagagcacgtttt
gi|2 : GTACCACCATT-T-CCCATTAACA--TTTT--A-----AGTAAAT-TC----------A-GT------T-----A-TTT-TTA---A-TATCA---ATATCA-AAATAATGCA-TGAAA-T-ACTTTTTA-GTCATAA---ATTCC--T----AAAA-ATAAAAGAATGAAC-AAATT----TATTAAATATTTA-----AATGAT--T--------TAC--------TTTTAT-----TGCCAACTATATATA---T--------------TTGGTATCTATGTCAGA-G-A--T-GGTTTC----TGA----AAATA-------GAT-A---------TT--CAA-T---AGAT-TTACATGTAATT----TTTAA-CAT----TTAAA-ATGCTGTTTCTTAATTTCCGAGATTGTT-TAATATACATGTACTGAGCAAATCCAACTC-AA--ATA-CT-TTTGTCATTTGATTTAAGCAATTTCATAAGCT------TGTACA-----------TGAAAAACAAATTTATTTAtttc
gi|20 : tATT-T-TTCATTTATA--TTTT--A-----AGTAAGT-TC--AT--AT-AA-TT------T-----T-TT-----------AACA---ATATCG-AAATAATGCA-TGCAA-A-ATTTT--AAGTCATAA---ATTCC--T----AAAAAATAAGAGGATGAAC-AAATT----TATTAAATATTTG-----AATGAT--T--------TTC--------TTTCAT-----TG------------A---T--------------TCA------------GATA-T--T-G-TTTT----CAA----AAATA-------GAT-AA--AAGATATT--CAA-T---ATAT-TTACATA-Atatgcatctttctaaaatcactgtcga
gi|21 : caGTACCGCCATT-T-TTCATTTACA--TTTA--A-----AGAAAGT-TC--TT--TT-TA-TT------TATTATT-TTT-TTA---T-TATCA---ATATCG-AAATAATGCA-TGAAA-T-TTTTTTTAAGTCACAA---ATTCA--T----AAAA-ATAAGAGGATGAAC-AAATT----TATTAAATATTTA-----AATGAT--T--------TTC--------TTTCAT-----TG------------A---T--------------TAAGT----------GA-A-A--T-G-TTTC----CAA----AAATT-------GAT-
gi|22 : GTACCACCATA-T-TTCATTAACA--TTTA--A-----AGAAAGT-TC--TC--TT-T------------------TTT-TTA---T-TATCA---ATATCG-AAATAATGCA-TGAAA-C-A-TTTTTAAGTCATGA---ATTCA--T----AAAA-ATAAG--------------------ATTAAACATTTA-----AATGAG--T--------TTC--------TTTCAT-----TG------------A---T--------------TAAGT----------G--A-A--T-G-TTTC----AAA----AAATA-------GAT-AA--AATATATT--CAT-T---TTAT-TTACATA-
gi|23 : -TA-TT------TA----T-GTT-TTA---AATATAA---ATGTCT-GAATAATGTA-AGAAA-T-CCTTTTCGA-TCTTAAGTTATTCAA-G----AAGA-AGAAGAGGATGGAA-ACGTT----TATTAAACATTAA-----TATGAT--TATTA----TTC--------GTTCAT-----TG------------
gi|24 : ttgatttatgttaaatgtgGTACCACCATT-T-TTCATTTACA--TTTA--A-----AGAAAGT-TC--TT--TT-TA-TTATTTTTT-----T-TTTATTA---T-TATCA---ATATCG-AAATAATGCA-TGCAA-A-TTTTTTTAAGTCATAA---ATTCA--T----AAAA-ATAAGAGGATGGAC-AAATT----TATTAAATATTTA-----AATGAT--T--------TTC--------TTTCAT-----TG------------A---T--------------TAAGT----------GA-A-A--T-G-TTTtaaacatatacctaaatttcaccttaaacatttaca
gi|25 : GTACCGCCATT-T-TTCATTTACA--TTTA--A-----AGAAAGT-TC--TT--TT-TA-TTATTT--T-----T-TTT-TTA---T-TATCATCAATATCG-AAATAATGCA-TGCAA-A-TTTTTTTAAGTAATCA---ATTCA--T----AAAA-ATAAGAGGATGAAC-AAATT----TATTAAATATTTA-----AATGA---T--------TTC--------TTTCAT-----TG------------A---T--------------TAAGT----------GA-A-A--T-G-TTTC----
gi|26 : GTACCGCCATT-T-TTCATTTACA--TTTA--A-----AGAAAGT-TC--TT--TT-TA-TTATTTT-T-----T-TTTATTA---T-TATCA---ATATCG-AAATAATGCA-TGCAA-A-TTTTTTTAAGTCATAA---ATTCA--T----AAAA-ATAAGAGGATGAAC-AAATT----TATTAAATATTTA-----AATGAT--T--------TTC--------TTTCAT-----TG------------A---T--------------TAAGT----------GA-A-A--T-G-TTTC----
gi|27 : GTACAGCCATT-T-TTCATTTACA--TTTA--A-----AGTAAGT-TC--AT--ATATA-TT------T-----C-TT----A---T-TATCA---ATATAG-AAATAATGCA-TGAAA-A-ACTTTT-AAGTCATAA---ATTCA--T----AAAA-ATAAGAGGATGAAC-AAGTT----TATTAAATATTTA-----AATGAT--T--------TTC--------TTTCAT-----TG------------A---T--------------TAAGA----------G--A-A--T-G-TTTC----CAA----AAA
gi|28 : GTACCGTTATA-T-TTCAATAACA--TTTC--ATATATATTAAAT-AG--TTA-TT-TA-TG------T-----T-TTA---A---A-TATAA---ACGTCA-AAATAAT--A-TAAAT-ATACTTTTTCAATCCCAA---GTTAA--TCAAGAAGA-AGAAGAAGATGAAC-ATGTT----TATTGAATATTTA-----AATGAT--TATTA----TTC--------TTTCAT-----TG------------
gi|29 : aaGTACCGCCATT-T-TTCATTTACA--TTTA--A-----AGAAAGT-TC--TT--TT-TAATT------T-----T-TTT-TTA---T-TATCA---ATATCG-AAATAACGCA-TGAAA-A-ATTTTTTAAGTCATAA---ATTCA--T----AAAA-ATAAGAGGATGAAC-AAATT----TATTAAATATTTA-----AATGTT--T--------TTC--------TTTCAT-----TG------------G---T--------------TAAGT----------GA-A-A--T-G-TTTC----ccaca
gi|3 : GTACTGCAATT-T-TTCATTTACAGTTTTAGTA-----AG-ACGG-TC--CT--TA-TA-CT------T-----T-TT----A---T-TATTA---ATATTG-AAATAATACA-CGAAA-A-ACTTTT-GAGTAATAA---ATTCC--T----AAAA-AAAAGAGGATGAAC-AAATT----TATTAAATATTTA-----AATGAT--T--------TTC--------TCTCAT-----TG------------A---T--------------TCAGA----------G--A-T--T-G-TTTC----CAA----AAATA-------GAT-AA--AAGATATT--CAG-T---ATAT-TTTCATA-ACCT----ATTAAAAGT----TTAAA-ACGCTGTTTCTTAATTTCAGAGATTTTT-TAATTTAC------TGAACAAATTTGACTA-AA--ATA-CT-TTTGTCATTTGTTTTAAGCAATTCCATAAGCT------TGTACATAGCCGTTTTTTGAAAAACATGTTTATTTA
gi|30 : GTACCGCCATT-T-TTCATTTACA--TTTA--A-----AGAAAGT-TC--TT--TT-TAATT------T-----T-TTT-TTA---T-TATCA---ATATCG-AAATAACGCA-TGAAA-A-ATTTTTTAAGTCATAA---ATTCA--T----AAAA-ATAAGAGGATGAAC-AAATT----TATTAAATATTTA-----AATGTT--T--------TTC--------TTTCAT-----TG------------G---T--------------TAAGT----------GA-A-A--T-G-TTTC----tatacatctttctaaaatcagatgtaaatag
gi|31 : T----ATTAAACAT----TTAAA-GTTCTGTTTCTTAATTTCGGAAAATGTT-TAATATAC------TGATCACATCCAACCA-TA--ATA-CT-TTTGTCATTTGATTTAAGCAACTTAATAAGCT------TGTATGTGGAAGGTCTTTGAAAAA
gi|32 : aT------T-----T-TTT-TTA---T-TATCA---ATATCG-AAATAATGCA-TGAAA-A-ATTTTTTAAGTCATAA---ATTCA--T----AAAA-ATAAGAGGATGAAC-AAATT----TATTAAATATTTA-----AATGAT--T--------TTC--------TGTCAT-----TG------------A---T--------------TAAGT----------GA-A-A--T-G-TTTC----CAA----AATTA-------GATAAA--AA-ATATT--CAC-T---ATAT-TTACATA-aagaagaagttaattgatatagacctttcttaaaacaag
gi|33 : -TTT-TAA---A-TATAA---ATATCG-AAATAATACA-AGATT-T-TTTTTTTAA-TTATTA---ATTTAAAG----AAGA-AAAAAAAGATTAAC-ACATT----TATTAAATATTAA-----AATGAT--TATTA----TTC--------TTTCAG-----TG------------
gi|34 : gccttatacataaatacgtatgGTACCGCCATT-T-TTCATTTACA--TTTA--A-----AGAAAAT-CC--------------------T-----T-TTT-TTA---T-TATCA---ATATCGAAAAAAATACA-TGAAA-A---TTTTTAAGTCATAA---ATTCA--T----TAAA---AAGAGGATGAAC-AAATT----TATTAAATATTTA-----AATGAT--ccaattgtttatttaaatttcagattacg
gi|36 : -TATCA---ATATCG-AAATAATGCA-TGCAA-A-TTTTTTTAAGTCATAA---ATTCA--T----AAAA-ATAAGAGGATGAAC-AAATT----TATTAAATATTTA-----AATGAT--T--------TTC--------TTTCAT-----TG------------A---T--------------TAAGT----------GA-A-A--T-G-TTTC----gatta
gi|37 : GTACCGCCATT-T-TTCATTTACA--TTTA--A-----AGTAAGT-TC----------A-TT------T-----T-ATT-TTA---T-TATCA---ATATCG-AAATAATGCC-TGAAA-A-A-AATTTAAGTCATAA---ATTCC--T----TAAA-ATAAAAAG
gi|4 : tGTACCGCCATT-T-TTCATTTACA--TTTA--A-----AGAAAGT-TC--TT--TT-TA-TT------T-----T-TTT-TTA---T-TATCA---ATATCG-AAATAATGCA-TGAAC-A-ATTTTTTAAGTCATAA---ATTCA--T----AAAA-ATAAGAGGATGAAC-AAATT----TATTTAATATTTA-----AATGAT--T--------TTC--------TTTCAT-----TG------------A---T--------------TAAGT----------GA-A-A--T-G-TTTC----CAA----AAATA-------GATAAA--AA-ATATT--CAA-T---ATAT-TTACATA-AACT----ATTAAACGT----TTAAA-ATGCTGTTTCTTAATTTCAGAGATTTCT-TAATATAC------TGAGCAAAACTGACTA-AA--ATA-CT-TTTATCATTTGTTTTAAGCAATTCCATAAGAT------TGTACATAGACGGTCTTTGAAAAACATGTTTATTTA
gi|40 : GTACCGCCTTT-T-TCCATTTACA--TTTA--A-----ACAAAGT-TC-------A-TA-TT------T-----T-
gi|5 : tGA----AAA-A-------AAT-TATTAA-ACATTGCCAAAT---ATATCTT---TG-AATTTCATACCAAACAT----TTAAA-ATATTATTTCTGAATTTCTGAGAACGTT-TAATATGC------TGAGCTAATCCGACTA-AA--ATATTT-TTTGTCATTTGATTTAAGCAATTCAATAGGCT------TGTATATGGAAGGTTTT----AAGCATAT
gi|6 : tagtactgtcatatttcattacatctaccatttgatatacattaaatgtttatttatattttagatatacatgtaaaagataatacaagaaataattttcaagttcttcaagaagaagaagaaaacgatGTACCGCCATT-T-TCCATTAACA--TTTT--A-----AGTAAAA-TC----------A-TT------T-----T-TAC-TTA---A-TATCA---AAATCG-AAATAATGCA-TGAAC-T-ACTTTTTA-GTCATAA---ATTCT--T----AAAA-ATAAGAGGATGAAC-AAATT----TATTAAATATTTA-----AATGAT--T--------TAC--------TTTCAC-----TGCCAACT------A---TATATACTTGGTATCTATGT----------AA-G-AGTT-GTTTTC----CGA----AAGTA-------GAT-AA--AATATATT--CAA-C---ATAT-TTATATA-AAAT----ATTAAACGT----TTAAA-ATGCTGTTTCTT----------AACATTATCATA-AT------TAAGCCGATACGAATA-AACGAAA-CTGTTCATTATTTGGTTacagctcatcatcatacaaaatactta
gi|7 : t-TA-TT------TA----T-GTT-TTA---AATATAA---ATGTCA-AAATAATAAAACGAAA-T-ACTTTC-AATCCA-AA---GTGCA--TCTAGAAGA-AGAATAGAATGAAC-ACGTT----TATTAAACATTTA-----GA-------------------------------------TG------------A---T--------------TA--T----------GA------T-T-CTTC----C--------ATT-------GCC-AA--A-------------T---ACAT-GTATATA-G--------TTAAGCGTCACATTAAACATGTTATTTCTTATATTCAGAGAATGGT-TTATATAA------TGCGCAAGTCCAATTA-AA--ATG-GT-TTTCTCAATTGATTCAAGCAATTCAATAAGCT------T
gi|8 : tatatatattaaatatgGCCACTATATTCATCTACA--TTTA--A------GAAAAT-TC--TT--TT-T----------------T-TTA-TTA---T-TATCA----TATCG-ATATAATGCA-TGAAA-C-ATTTT-TAAGTCATAA---ATTCA--T----AAAA-ATAAAAGGATGAAC-AAATT----TATTAAATATTTA-----AATGAT--T--------TTC--------TTTCAT-----TG------------A---T--------------TAAGT----------G--A-A--T-G-TTTC----CAA----AAATA-------GAT-AA--AAGATATT--CAA-T---ATAT-TTACATA-AACT----ATTAAACGT----TTAAA-ATGCTTTTTCTTAATTTCAGAGATTTCT-TAATATAC------TGAGCAAAACTGACTA-GA--ATA-CT-TTTATCATTTGTTTTAAGCAATTctgttttcaatgcagtcgttaccgaagatatttac
gi|9 : AGAGGATGAAC-ACGTT----TGTTAAACATTTA-----AA-------------------------------------TG------------A---T--------------TA-GT-------------A-T--T-A-TTTC-------------ATT-------GCC-AA--A---TAT-----A-T---ATAT-----ATA-AATTTCACATTAAACAT----TTACA-ATGTTATTTCTTATATTCAGAGAACGTT-TTATATAC------TGAGCAAATCCGATTG-AA--ATAGAT-TTTGTCATTTTACTTAAAGAATT
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): ATTAGTTCCGTTAAAGTTATTTACCATTTGATATATCTTGAATATCAATTTATGTTTTAAATATAAATGTCAACAAATTACAAGAAATACTTTTCAATCCTCCGTTCTTCAAGATGAATAAGACTGACAATGAATACGTTTATCAAACATTTAAATGGTTATCATTTTTATTGCCAAATCAATATTTAAATTTCACATTAAACATTTTAAATCTTATTTCTTAAATTCAGATAACTTATTATATACGGA
Unaligned ( gi|35 ): TGTACCGTCATACTCCATTACCATTTGATATATAATAAATATTGATCTACGTTTTAAATATAAATGTCAAAATACTATAAAAAAATACTTTTTAAAGTTTTCAATCCAAAGTTCTTCAAGAAGAAGAAAATGGTGAC
Unaligned ( gi|38 ): TAGTACCGGCATATTTCATTACCTGTTGATATATGTATTTGGTTTTTATTTATGTTTTGAATATAAATGTAAAACTAGTATAATAAATACTTGAACTTTTTTAAGA
Unaligned ( gi|39 ): ATTTGTAACGCCATTTGCCATTAACATTTTAAGTAAATTCATTTACAATAATATAAATACCGAAAT