lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111
lowQualScore : 1111 2222 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1111111 11 1 11111111 555 3333333 666666666666666666666666666666666666666666666 11 222222222222222 11 11 1
lowQualScore : 2 2 9999 8888888 2 6666 1111 0 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 0000000 0 1 2 4 77 33 0 99999999 3 8 4 444 2222222 777777777777777777777777777777777777777777777 6 33 777777777777777 33 6 55 7
lowQualScore : . . .... ....... . .... .... . ........................................................................................................ ....... . . . . .. .. . ........ . . . ... ....... ............................................. . .. ............... .. . .. .
lowQualScore : 2 2 3333 1111111 9 1111 1111 2 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 8888888 6 1 9 0 99 88 0 88888888 2 0 7 333 5555555 555555555555555555555555555555555555555555555 0 22 000000000000000 88 0 00 0
consensus : CTAAATTAAA-ATATTGTTTGTTTGT-C---CTTTACCTACCCATC-------ATTTTC-A----TCT----TGGGT-------------A----G-------G----T--------A----A--------AT-------------T-A-----------TTGTA---------------CGTTTT-------GTCGGACATAACGTC-TAATTATTACCTTTTCCTTGCACAT--TATCTCT--TT-AA---ANCGGCATAACCAGTA-ACTCGGC---CAATTC-------CGTCAA-CC-ATCGG-------A--AT-GA-NACT-GTCTCTAGG-----TATGTGCAAAGATATAAATGCATATATGG--ACA-TT-TTTTTTT--TGTTGGAACCTNATTTTATGG
Reference ( gi|2 ) : CTAAATTAAA-ATATTGTTTGTTTGT-C---GTTTACCTACCCATC-------ATTTTC-A----TCT----TGGGT-------------A----G-------G----T--------A----A--------AT-------------T-A-----------TTGT----------------CATTTT-------GTCAGACATAACATC-TAATTATTACCTTTTCCTTGCACAT--TATCTCT--TT-AA---AACAGCATAACCAGTA-ACTCAGCTTACAATTC-------CATCAAACC-ATTGG-------A--A--GA-TAC--GT------G-----TATGTGTAAAGATATTAATGCATACATGG--ACA-TT-TTTTTTT--TGTTGGAGCCTTATTTTAAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
gi|13 : CTAAATTAAA-ATAGTGTTTGTTTGT-C---CTTTACCTACCCGTC-------ATTTTC-A----TCT----TGGGTAGGC---------A----G-------G----T--------G----A--------AT-------------T-C-----------TTAT-----------------ATTTT-------GTAGGACATAACATC-TACCTATTACCATTTCCTTGCACAG--TATCTGT--TT-AAGGTAACA--ATAA
gi|17 : taggcCTAAATTAAG-ATATTGTTTGTTTGT-C---CTTTACCTACTGATC-------ATTTTC-A----TCT----TGGGT-------------A----G-------G----T--------A----A--------GTAGGTAAATAATTAT-A-----------TTGTAATTTTA---------TATTTT-------GTCAGAAATAACATC-TAATTATTACCTTTTCCTTGCATAC--TAT
gi|11 : aggcCTAAATGAAA-ATATCATTTGTTTGT-C---CTTCAACTACGTATC-------ATTTTC-A----TCT----TGGTT-------------A----G-------G----T--------AGTT-A--------AT-------------TTA-----------TTATATAAATATATTTTA--CATTTTTTGTTTTGTGGGAAATAACATC-TTATTTTTACCTTTCCCTTGTACCT--TATCTCT--TTGAA---AGCAGCATAACCAGTA-
gi|14 : CTAAATTAAA-ATATTGTTTGTTTGT-C---CTTTACCTACCCATT-------ATTT-C-A----TCTGAAGTAGGT-------------ATGTGG-------G----T--------A----A--------AT-------------T-A-----------T
gi|52 : gtCTAAATTAAA-ATATTGTTTGTTTGT-C---CTTTACTTGCCCATC-------ATTTTC-A----TAT----Tcatattatactttaccttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntag
gi|20 : agtCTAAAATAAA-ATATTGGTTGTTTGT-C---CTTTACCTACCTACC-------A
gi|26 : atattgaatatccaatagtttggcagcaacaaataaaaacattatttttttagcaatgcaatgaaatgattagagaagagactatattattCTAAAATAAA-ATGTTGTTTGTTTGT-C---CTTTACCTACCTACCTGATGATATTGTC-ACTACTCT----T--AT-------------A----ATTTTATTG----C--------A----A--------AT-------------C-A-----------TTGC----------------CAAAAT-------GTTGG--ATAATATC-CAAgcct
gi|54 : gcCTAAAATAAA-ATATTGTTTATTTAT-C---ATTAACC
gi|33 : aggtTAAATTAAA-ATATTGTATGTTTGT-A---TTTTACCTACCCATC-------TTTTTC-A----TCT----TTGAT-------------A----acgataatattgt
gi|24 : aggttTAATTCAAATATATTGTTTATTTGT-C----------------------------TT-------TCT----TGGGT-------------A----G-------G----T--------AGGTAA--------AT-------------T-A-----------TTATATTTTATTATATTTTACATTTT-------GTCAGAAAAAGC--C-TAATTATTACTTCTTCCTTACACAT--TATCtattacttaggttagtagataattgtatt
gi|58 : cctTAAAC-AAA-ACATTGTTTGTTTTT-C---CTTTACCTACc
gi|15 : ctAAATTAAG-ATATTGTTTGTTTGT-C---CTTGACCTACCCGTC-------ATTTCC-A----TCTAATTTGTGTTTTGTCGGACATAA----G-------G----TCAT-----A----A--------AA-------------C-AC----------NNNN----------------NNNNNN-------NNNNNNNNNNNNNNN-TAATTGTTACCATTTCCTTGCACAT--TATCTat
gi|40 : accgAAATTTAA-AT----TTTGTTTGT-C---CATTACCTATCCATC-------ATTTTC-A----TCT----TTGGT-------------A----G-------G----T--------A----
gi|29 : tgaggccaATTAAA-ATATTGTTTGT-----C---CTTTACCTACTCATC-------ATTTTC-A----TCT----TGGGT-------------A----G-------G----T--------A----A--------AT-------------T-A-----------TTATATTTAAAATTTTG---TGTTTT-------GTCGGACATAACGTC-TAggtagataaatt
gi|1 : TTCAA-ATATTGTTTTTTTTTTC---CTTGACCTATCCATC-------ATTTTC-A----TCTG---TGAATTATTAT-------A----T-------G----T--------A----A--------AT-------------T-A-----------TTATATTA------------CATTTT-------g
gi|9 : agtAAA-ATATAATTTGTTTGT-C---CTTTACCTACCCGTT-------ATTTTC-A----TCT----TGGGT-------------A----G-------G----TGGGAAGGTA----AGATATTATAT-------------T-ACATTTTACATTTTGT-----------------GTTTT-------GTCAGACATAATGTC-TAATTATTACCTTTTCCTTGCACATTATATATCT--TT-AA---ATCGGCATTACCAGTA-ACTacattttgtttcgtaaatttttatgtagtgatcagtaattctaatatacaatttagctgtttcgccgatgggaattgtcttaaaatttctgattaaattgtatatactctgccaattctgtcaatcattggtatttaaaagaatactcgctaaatatgtgcatagataaatgaaaatattgacaactttttttttgttgaaacctgattttatagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|31 : ttaggtctaAGA-ATATTGTTTGTTTGT-C---TTTTACCTTCACAAC-------ATTTTTAA----TCTTAAATAGGT-------------A----G-------GTAGTT--------A----A--------AT-------------T-A-----------TTAT-----------------ATTTT-------aa
gi|18 : AAA-ATAATGTTTGTCTGT-CCATACTTACCTACCTACC-------ctacattttgatttttggt
gi|42 : ttgaatattattcatcattttaacaacaacaaataataaaattatttctttgaaagttgcataaaatttattagagtaaggcaatattgtca----T--------A----C--------AT-------------T-------------TTGT-----------------GTTTT-------GTCAGACA-AAAGTCTTAATTAGTACCTTTTCCTTGCAGAT--Ttttttcgac
gi|43 : ttatatcatattt-----------TTGT-----------------GTTTT-------GTTTGACATTACGCC-TAATCATTATCTTTTCCTTGCACtt
gi|3 : aagatatcaacaaatgctATTTCTGATT-AA---ATT-GCATA-TTATTATACTCAGTTGTCAATTCTGCCATCCATCAA--T-ATTGG-------A--ATGGT-TGCTAG-------G-----TATGTGCAAAGATATAAATGCTT------------TT-TATTGTTGCTGTTGGAACC-TATTTT
gi|1 : tagctgggtcactgactaaaaattatcgtaaa-ACTCTGC---CAATTC-------TGTCAA-TC-ATTGGTATTTAAA--A--GAATAC--TC------GCTAAATATGTGCATAGATA--AATGAAAATATTG--ACAACT-TTTTTTT--TGTTGAAACCTGATTTTAtatggatatgagaaaccgtttatggagcattgtaggaaaaaaaagtgttgcaaaggaaataaacaaaaaagtataattcctgtcacggtatttgaacttttatcgcccaagcgacaatctgcagatata
gi|4 : agtttcaaatattgttttttttttccttgacctatccatcattttcatctgtgaattattatatgtaaattattatattacattttacattttgtttcgtaaatttttatgtagtgatcagtaattctaatatacaatttagctgtttcgccgatgggaattgtcttaaaatttctgattaaattgtatat-ACTTGGC---CAATTC-------CATCA--CCTATTGG-------T--ATTGG-GACT-GTCTCTAGA-----TATTTGCAAATATATTAATGCATTTATGGAAACA-TTGTTGTTGT--TGTTGGAATCTAAATTTATGGtagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|27 : ccttgctgatggaaattatcataaaatttcagattagattgtatacAATTC-------CATCAA-CC-ATCAG-------ATAA--GA-AAG--GTCTCTAGA-----TATGTGCAAAGATAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|55 : gctgtttcgctgaaggaaactatcataaaactactgtttaaattgaatatacttggggAAAGATATAAATGCATATATGG--ACA-AT-TTTTTTT--
35 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|5 ): ACGAAAATTATTGTAACATTTTTAACTAATTCGTAAATACTCGGCCAATTCACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGACAATTTTCTTTTTTTGTTGGAACCTCAATTTATGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGA
Unaligned ( gi|6 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTTTTTTTTTATTGGACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAG
Unaligned ( gi|7 ): TTCCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATTTTTTTTTTTTGGAACCTCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAA
Unaligned ( gi|8 ): GCTGCTCCCCTAACGAACATTATTGTAAAATTTCCAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAACAAATACATTTTTTCCATTTTGTTGGAACATATTTTTTTGGATATGAGAATCCATTTAAGGAGCACTTT
Unaligned ( gi|10 ): GCTGCTTTGCTGACGGAAATTATCGTAAAATTTTCAACTCGGTCAATTCTATAATCGGCACTAGAACGGTTGCAAGACATGTGCAAAGATAAAAAATATGAAAAAATATTTAGTTTTCATTTTCATTTAGTTTGAACCTATTTGTGTACATGAGAAGCAATTAATGGAACACTGTAG
Unaligned ( gi|12 ): GCTGATTTGCTGATGGAAATTAGAGCAAAATTGTTTGATTCCAGCATAATACTTGGACAATTCCACCATTCTTCAGTATTATAAAAATGGTTTCTAGACAAAAATATAAATGCATACAATTTTCTTCTTAATTTTGTTGAAATCTATTT
Unaligned ( gi|16 ): TGGTTATTAGATGTGTGCAAAGAAATAGATTCATTTATGGACAAATATTGTTTTTTCATTTTGTTGAAACATGATATTTTTATATATAAGAAGTCGTTTATGGGGGAAAATAGTATTGCTAGTAAAAGAAAAATTGTCAAAAGA
Unaligned ( gi|19 ): GCTGCTTCGCTGACGGAAAATGTCATAAAATCTTCGATTTAATGGTATTTATCTGTCAATTCCGCCATCCTTCGGTATATGAAGTGCTTCGATATACATAAATATATGGACGCCTCTTGCTATTATGTTGAAACTTAA
Unaligned ( gi|21 ): CCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGACAAATATTTTTTTTTCTATTTTGTTTGAACATATATTTTTTGGATAAAAGAAGCCATTAATGGAGCC
Unaligned ( gi|22 ): GCTGCTCCACTGCCGGAACTATCGGAAACTTACCGACTCAGTTGCATATACTCGGCAATTTCCGTATCCTACGTTATACATGTGCAAAGATGTAGATGCTTTTTTTTCTATTTGTTGGAACATA
Unaligned ( gi|23 ): AGTTGCATTGTTGACGGAAATTATGGTAAAAATTCCGATTTAATCGTTTATACATGTACCTGATCATTTTATAATCCTTCAGTTATTGTCTTAAAATGCTAGATATGTGCAAAGATGTAAATG
Unaligned ( gi|25 ): TTTTATTTTGTTGGAGCATATATCTGTTTTCGATATGAGAAGCCGTTGAAGAAGTAATGCCGAACACAGTAGTGTTTTAGGGGAAATTAGCAAAAAGGATAATGTTTGTCATGTGATTCG
Unaligned ( gi|28 ): GTTGATGGAGCACTATAAGAAAAATAGTGTTGCTAGGGTAATAATTAAACAATATCTTGTTACAGGATTCACACTCGGCTCGAACGAGCTACACTCCGCA
Unaligned ( gi|30 ): AGTTAATACAGATATGCCAATTAAATACTCTGCTGACAGAAATCATCATAAAATTTCCGATTAAATTGTATACATGTATTTTCAGTCATTTCCGTCA
Unaligned ( gi|32 ): CCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGCTTTTATTGTTGTTGGAAACTGATTTTAT
Unaligned ( gi|34 ): GTAATTCTAATATGCAAATAAGCTGCTCTTTTAACTGAAATTATCCTAAAATTTCTGATGATATTCCCGCATACATTTATTGCAGTCG
Unaligned ( gi|35 ): CTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGACAAACATTTTTTTCATTTTATTGGA
Unaligned ( gi|36 ): TGTTTTTCATTTTTGATGGAACATACTTTTTTTGGCTATGAGAGACAGTTTATTAAGAACTGTGCATAAGAAAAAATAGTTTTGCA
Unaligned ( gi|37 ): CCGTTATTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGCAAATATATTTGTCAGTTTTGTT
Unaligned ( gi|38 ): GCAGCTTCAGTGACGACGGAAATTGTCGTTACATTTTCGATTCAATCGTTTATATTCGGCCAGCTTTCAGGATTAGAACGGTTGC
Unaligned ( gi|39 ): GCTGTTTCGCTGATGGAAATTATTGTAAAACTTCTGATTAAATGCTACATACCGGTACTTGCCCAATTCCTTCATC
Unaligned ( gi|41 ): CTGATGTTCAAATCAACTGCTTCGCTGACGGAAATTATCGGTAAACTTTTAATCAAATCCGCATATTAGTC
Unaligned ( gi|44 ): GCTGCTTCGCTGACAGAAATTATCGTAAAATTTCTATTTCAAACATATATATGCTCTGCCAATT
Unaligned ( gi|45 ): TGTTCTGCTGGCGGAAATTATTGTAAAATTTTCGATAAATTGAACAATTATACTCGACCAAT
Unaligned ( gi|46 ): ACTAGATACTTCGCTGACGAAAATTATCGTAAAATTTCCGATTCAGTTGTATGCATTCGAC
Unaligned ( gi|47 ): ACTGCTTCGCTTACGGAAATAATCGTAAAATTTCCGAATCAATTGTATAAACTCGGCACA
Unaligned ( gi|48 ): ACCCAATTTTATGGATAGAAGAAACCATTTATGGAGCACTAAGGGAAAAATATAGTGT
Unaligned ( gi|49 ): TTCTCTGCTGAGGGAAATTATAGTAAAATTTCTGATTTGATCATATATACTCTGCC
Unaligned ( gi|50 ): GCTATGCTGGTGGAAATTATTGTAAAATTTCTGATTCATTGTGTATACTCAGCCAA
Unaligned ( gi|51 ): TGTTTCGCTGACAGAAATTATTGTAAAATTTCCGTTTAATAGTATATACTCAACC
Unaligned ( gi|53 ): TGTTTTGCCGACAGAAATTATCATAAAATTTCCAATCATATACAGTTCTAT
Unaligned ( gi|56 ): ATATTTCATTATATCAACATTATAATTGCCTTTTAATCATATA
Unaligned ( gi|57 ): TGTTTTAAACTTCTGTTCTCCAGAACAAGAATTTATTTGGT
Unaligned ( gi|59 ): GCTTTACTGATGGAAGTTATCATAAAATTTCTGATT
Unaligned ( gi|60 ): GCTGCTACGCTGACGGAAATCATCGAAACATT
Alignments
lowQualScore : 1111 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 11 1111 111111 5555555555555555555555555 2222222222222222222 222222 11111
lowQualScore : 2 2 333 2 2222 0 777777777 6666 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 0 0 1 4 4 77 11 8 1 0 3 4 6666 4 1 4 33 222222 4444444444444444444444444 0 3 555 7777 7777777777777777777 3 333333 55 11111
lowQualScore : . . ... . .... . ......... .... ....................................................................................... . . . . . .. .. . . . . . .... . . . .. ...... ......................... . . ... .... ................... . ...... .. .....
lowQualScore : 2 2 999 9 1111 2 888888888 5555 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 5 8 6 0 0 99 00 0 0 8 2 0 4444 4 7 4 88 888888 2222222222222222222222222 9 5 888 1111 4444444444444444444 6 222222 00 33333
consensus : CTAAATTAAA-ATATTGTTTGTTTGT-CC---TTTACCTACCCATCATTTTC-ATCT----TGGGT----A----GG----T--------A----------------A--------AT-------------TA--TTG------TA---------------C-------GTTTTGTCGGACATAACGTC-T-AATTATTACCTTTTCCTTGCACAT--TATCTCT--TT-AAANCGGCATAACCAGTA-ACTCGGC---CAATTC-CGTC-ANCCATC------GG-------A--A-T-GANACTG-TCGCTAGATATGTGCAAAGATATAA---ATG----CATATATGG---ACA-------TT-TTTT------TTT--TGTTGGAACCTNA---TTTTATGG
Reference ( family-613 ) : CTAAATTAAA-ATATTGTTTGTTTGT-CC---TTTACCTACCCATCATTTTC-ATCT----TGGGT----A----GG----T--------A----------------A--------AT-------------TA--TTG------TA---------------C-------GTTTTGTCGGACATAACGTC-T-AATTATTACCTTTTCCTTGCACAT--TATCTCT--TT-AAANCGGCATAACCAGTA-ACTCGGC---CAATTC-CGTC-AACCATC------GG-------A--A-T-GANACTG-TCTCTAGGTATGTGCAAAGATATAA---ATG----CATATATGG---ACA-------TT-TTTT------TTT--TGTTGGAACCTNA---TTTTATGG
gi|1 : TTCAA-ATATTGTTTTTTTTTTCC---TTGACCTATCCATCATTTTC-ATCT-------------------G----T--------G----------------A--------AT-------------TA--TTA------TA---------------T-------GT
gi|1 : agt-ACTCTGC---CAATTC-TGTC-AATCATT------GGTATTTAAA--A-G-AATACT---CGCTAAATATGTGCATAGATA--A---ATG----AAAATATTG---ACAA------CT-TTTT------TTT--TGTTGAAACCTGA---TTTTATAGaaattattatattacattttacattttgtttcgtaaatttttatgtagtgatcagtaattctaatatacaatttagctgtttcgccgatgggaattgtcttaaaatttctgattaaattgtatatactctgccaattctgtcaatcattggtatttaaaagaatactcgctaaatatgtgcatagataaatgaaaatattgacaactttttttttgttgaaacctgattttatagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|10 : agtttcaaatattgttttttttttccttgacctatccatcattttcatctgtgaattattatatgtaaattattatattacattttacattttgtttcgtaaatttttatgtagtgatcagtaattctaatatacaatttagctgtttcgccgatgggaattgtcttaaaatttctgattaaattgtatatA-ACTCGGT---CAATTC-TAT---A--ATC------GG-------C--ACT-AGAACGG-TTGCAAGACATGTGCAAAGATAAAAAATATGAAAAAATATTTAGTTTTCA-------TT-TTCA------TTT--AGTTTGAACCT-A---TTTannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|11 : gctgctttgctgacggaaattatcgtaaaattttcCTAAATGAAA-ATATCATTTGTTTGT-CC---TTCAACTACGTATCATTTTC-ATCT----TGGTT----A----GG----T--------AGTTAATTTATTATATAA--------ATA------------TA--TTT------TA---------------CATTTTTTGTTTTGTGGGAAATAACATC-T-TATTTTTACCTTTCCCTTGTACCT--TATCTCT--TTGAAAGCAGCATAACCAGTA-gtgtacatgagaagcaattaatggaacactgtag
gi|12 : CAGCATAAT------ACTTGGA---CAATTC-CACC-ATTCTTC------AGT------ATTA-T-AAAAATGGTTTCTAGA------CAAAAATATAA---ATG----CATACA--------A-------TT-TTCTTCTTAATTT--TGTTGAAATCT-A---TTT
gi|13 : gctgatttgctgatggaaattagagcaaaattgtttgattcCTAAATTAAA-ATAGTGTTTGTTTGT-CC---TTTACCTACCCGTCATTTTC-ATCT----TGGGTAGGCA----GG----T--------G----------------A--------AT-------------TC--TTA------TA------------------------TTTTGTAGGACATAACATC-T-ACCTATTACCATTTCCTTGCACAG--TATCTGT--TT-AA
gi|14 : taggcCTAAATTAAA-ATATTGTTTGTTTGT-CC---TTTACCTACCCATTA-TTTC-ATCTGAAGTAGGT----ATGTGGG----T--------A----------------A--------AT-------------TA--TCA------TA---------------ggtaacaataa
gi|15 : gtAAATTAAG-ATATTGTTTGTTTGT-CC---TTGACCTACCCGTCATTTCC-ATCT--------------------------------------------------A--------AT-----------------TTG------T------------------------GTTTTGTCGGACATAAGGTCAT-AAttatactttaccttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntag
gi|16 : accgTAGATGTGTGCAAAGAAATAG---ATT----CATTTATGG---ACAAATATTGTT-TTTTCA----TTT--TGTTGAAACATGATATTTTTATaacacnnnnnnnnnnnnnnnnnnnnnnnnntaattgttaccatttccttgcacattatct
gi|17 : tggttatCTAAATTAAG-ATATTGTTTGTTTGT-CC---TTTACCTACTGATCATTTTC-ATCT----TGGGT----A----GG----T--------A----------------A--------GTAGGTAAATAATTATA--TTGTAATTTTA---------------T-------ATTTTGTCAGAAATAACATC-T-AATTATTACCTTTTCCTTGCATAC--TATatataagaagtcgtttatgggggaaaatagtattgctagtaaaagaaaaattgtcaaaaga
gi|18 : aggcAAA-ATAATGTTTGTCTGT-CCATACTTACCTACCTACC
gi|19 : ttgaatattattcatcattttaacaacaacaaataataaaattatttctttgaaagttgcataaaatttattagagtaaggcaatattgtcaTCTGT---CAATTC-CGCC-ATCCTTC------GGT------AT-A-T-GA-AGTG-CTTC--------------GATATAC---ATA----AATATATGG---ACG-------CC-TCTTGCTA--TTA--TGTTGAAACTTAA---tttttcgac
gi|2 : gctgcttcgctgacggaaaatgtcataaaatcttcgatttaatggtatttaCTAAATTAAA-ATATTGTTTGTTTGT-CG---TTTACCTACCCATCATTTTC-ATCT----TGGGT----A----GG----T--------A----------------A--------AT-------------TA--TTG------T----------------C-------ATTTTGTCAGACATAACATC-T-AATTATTACCTTTTCCTTGCACAT--TATCTCT--TT-AAAACAGCATAACCAGTA-ACTCAGCTTACAATTC-CATCAAACCATT------GG-------A--A---GATAC-G-T------GTATGTGTAAAGATATTA---ATG----CATACATGG---ACA-------TT-TTTT------TTT--TGTTGGAGCCTTA---TTTTAAGG
gi|20 : CTAAAATAAA-ATATTGGTTGTTTGT-CC---TTTACCTACCTACCAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|22 : atattgaatatccaatagtttggcagcaacaaataaaaacattatttttttagcaatgcaatgaaatgattagagaagagactatattattATGTGCAAAGATGTAG---ATG----CTTTT-----------------TT-TTCT------ATT--TGTTGGAACgcct
gi|23 : gctgctccactgccggaactatcggaaacttaccgactcagttgcatatactcggcaatttccgtatcctacgttatacCTAGATATGTGCAAAGATGTAA---ATG----ata
gi|24 : agttgcattgttgacggaaattatggtaaaaattccgatttaatcgtttatacatgtacctgatcattttataatccttcagttattgtcttaaaatgTAATTCAAATATATTGTTTATTTGT-CT---TT---------------------CT----TGGGT----A----GG----T--------AGGTA------------A--------AT-------------TA--TTA------TATTTTATTATATTTTAC-------ATTTTGTCAGAAA-AA-GCC-T-AATTATTACTTCTTCCTTACACAT--TATC
gi|26 : cctCTAAAATAAA-ATGTTGTTTGTTTGT-CC---TTTACCTACCTACCc
gi|27 : gc-ACTTGGG---GAATTC-CATC-AACCATC------AG-------AT-A-A-GAAAG-G-TCTCTAGATATGTGCAAAGATAtgatgatattgtcactactcttataattttattgcaaatcattgccaaaatgttggataatatccaa
gi|29 : gctgtttcgctgaaggaaactatcataaaactactgtttaaattgaatatATTAAA-ATATTGT----TTGT-CC---TTTACCTACTCATCATTTTC-ATCT----TGGGT----A----GG----T--------A----------------A--------AT-------------TA--TTA------TATTTAAAATTTTG---T-------GTTTTGTCGGACATAACGTC-T-A
gi|3 : ATTTCTGATT-AAATTG-CATA-TTATTATACTCAGTTGTCAATTC-TGCC-ATCCATCAATATTGG-------A--A-T-G-----G-TTGCTAGGTATGTGCAAAGATATAA---ATG----CTT-------------------TT-TATT------GTTGCTGTTGGAACCTAT---TTTTATGGg
gi|31 : tagctgggtcactgactaaaaattatcgtaaaAGA-ATATTGTTTGTTTGT-CT---TTTACCTTCACAACATTTTTAATCTTAAATAGGT----A----GGTAGTT--------A----------------A--------AT-------------TA--TTA------TA------------------------TTTTatatgagaaaccgtttatggagcattgtaggaaaaaaaagtgttgcaaaggaaataaacaaaaaagtataattcctgtcacggtatttgaacttttatcgcccaagcgacaatctgcagatata
gi|33 : TAAATTAAA-ATATTGTATGTTTGT-AT---TTTACCTACCCATCTTTTTC-ATCT----TTGAT----A----ctacattttgatttttggt
gi|4 : aggtt-ACTTGGC---CAATTC-CATC-ACCTATT------GG-------T--A-TTGGGACTG-TCTCTAGATATTTGCAAATATATTA---ATG----CATTTATGGAA-ACA-------TTGTTGT------TGT--TGTTGGAATCTAA---ATTTATGGtattacttaggttagtagataattgtatt
gi|40 : ccttgctgatggaaattatcataaaatttcagattagattgtatacAAATTTAA-AT----TTTGTTTGT-CC---ATTACCTATCCATCATTTTC-ATCT----TTGGT----A----GG----T--------A----------------nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|42 : tgaggcca----T--------A----------------C--------AT-------------T---TTG------T------------------------GTTTTGTCAGACA-AAAGTC-TTAATTAGTACCTTTTCCTTGCAGAT--Tggtagataaatt
gi|43 : ttatatcatattt--TTG------T------------------------GTTTTGTTTGACATTACGCC-T-AATCATTATCTTTTCCTTGCACtt
gi|5 : aagatatcaacaaatgct-ACTCGGC---CAATTCACTNN-NNNNNNN------NN-------N--N-N-NNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNN---NNN----NNNNNNNAG---ACAATT----TT-CTTT------TTT--TGTTGGAACCTCA---ATTTATGG
gi|52 : acgaaaattattgtaacatttttaactaattcgtaaatCTAAATTAAA-ATATTGTTTGTTTGT-CC---TTTACTTGCCCATCATTTTC-ATAT----Tannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaga
gi|55 : agtAAAGATATAA---ATG----CATATATGG---ACA--------A-TTTT------TTT--TGTAGAAATCT
gi|58 : TAAAC-AAA-ACATTGTTTGTTTTT-CC---TTTACCTAC
gi|9 : ctAAA-ATATAATTTGTTTGT-CC---TTTACCTACCCGTTATTTTC-ATCT----TGGGT----A----GG----TGGGAAGGTA----------------AGATATTATAT-------------TACATTT------TA---------------CATTTTGTGTTTTGTCAGACATAATGTC-T-AATTATTACCTTTTCCTTGCACATTATATATCT--TT-AAATCGGCATTACCAGTA-ACTat
29 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTTTTTTTTTATTGGACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAG
Unaligned ( gi|7 ): TTCCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATTTTTTTTTTTTGGAACCTCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAA
Unaligned ( gi|8 ): GCTGCTCCCCTAACGAACATTATTGTAAAATTTCCAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAACAAATACATTTTTTCCATTTTGTTGGAACATATTTTTTTGGATATGAGAATCCATTTAAGGAGCACTTT
Unaligned ( gi|21 ): CCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGACAAATATTTTTTTTTCTATTTTGTTTGAACATATATTTTTTGGATAAAAGAAGCCATTAATGGAGCC
Unaligned ( gi|25 ): TTTTATTTTGTTGGAGCATATATCTGTTTTCGATATGAGAAGCCGTTGAAGAAGTAATGCCGAACACAGTAGTGTTTTAGGGGAAATTAGCAAAAAGGATAATGTTTGTCATGTGATTCG
Unaligned ( gi|28 ): GTTGATGGAGCACTATAAGAAAAATAGTGTTGCTAGGGTAATAATTAAACAATATCTTGTTACAGGATTCACACTCGGCTCGAACGAGCTACACTCCGCA
Unaligned ( gi|30 ): AGTTAATACAGATATGCCAATTAAATACTCTGCTGACAGAAATCATCATAAAATTTCCGATTAAATTGTATACATGTATTTTCAGTCATTTCCGTCA
Unaligned ( gi|32 ): CCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGCTTTTATTGTTGTTGGAAACTGATTTTAT
Unaligned ( gi|34 ): GTAATTCTAATATGCAAATAAGCTGCTCTTTTAACTGAAATTATCCTAAAATTTCTGATGATATTCCCGCATACATTTATTGCAGTCG
Unaligned ( gi|35 ): CTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGACAAACATTTTTTTCATTTTATTGGA
Unaligned ( gi|36 ): TGTTTTTCATTTTTGATGGAACATACTTTTTTTGGCTATGAGAGACAGTTTATTAAGAACTGTGCATAAGAAAAAATAGTTTTGCA
Unaligned ( gi|37 ): CCGTTATTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGCAAATATATTTGTCAGTTTTGTT
Unaligned ( gi|38 ): GCAGCTTCAGTGACGACGGAAATTGTCGTTACATTTTCGATTCAATCGTTTATATTCGGCCAGCTTTCAGGATTAGAACGGTTGC
Unaligned ( gi|39 ): GCTGTTTCGCTGATGGAAATTATTGTAAAACTTCTGATTAAATGCTACATACCGGTACTTGCCCAATTCCTTCATC
Unaligned ( gi|41 ): CTGATGTTCAAATCAACTGCTTCGCTGACGGAAATTATCGGTAAACTTTTAATCAAATCCGCATATTAGTC
Unaligned ( gi|44 ): GCTGCTTCGCTGACAGAAATTATCGTAAAATTTCTATTTCAAACATATATATGCTCTGCCAATT
Unaligned ( gi|45 ): TGTTCTGCTGGCGGAAATTATTGTAAAATTTTCGATAAATTGAACAATTATACTCGACCAAT
Unaligned ( gi|46 ): ACTAGATACTTCGCTGACGAAAATTATCGTAAAATTTCCGATTCAGTTGTATGCATTCGAC
Unaligned ( gi|47 ): ACTGCTTCGCTTACGGAAATAATCGTAAAATTTCCGAATCAATTGTATAAACTCGGCACA
Unaligned ( gi|48 ): ACCCAATTTTATGGATAGAAGAAACCATTTATGGAGCACTAAGGGAAAAATATAGTGT
Unaligned ( gi|49 ): TTCTCTGCTGAGGGAAATTATAGTAAAATTTCTGATTTGATCATATATACTCTGCC
Unaligned ( gi|50 ): GCTATGCTGGTGGAAATTATTGTAAAATTTCTGATTCATTGTGTATACTCAGCCAA
Unaligned ( gi|51 ): TGTTTCGCTGACAGAAATTATTGTAAAATTTCCGTTTAATAGTATATACTCAACC
Unaligned ( gi|53 ): TGTTTTGCCGACAGAAATTATCATAAAATTTCCAATCATATACAGTTCTAT
Unaligned ( gi|54 ): AGGTCTAAAATAAAATATTGTTTATTTATCATTAACCACGATAATATTGT
Unaligned ( gi|56 ): ATATTTCATTATATCAACATTATAATTGCCTTTTAATCATATA
Unaligned ( gi|57 ): TGTTTTAAACTTCTGTTCTCCAGAACAAGAATTTATTTGGT
Unaligned ( gi|59 ): GCTTTACTGATGGAAGTTATCATAAAATTTCTGATT
Unaligned ( gi|60 ): GCTGCTACGCTGACGGAAATCATCGAAACATT
Alignments
lowQualScore : 1111 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 11 111 666666666666666666666666666666666 2222222222222222222 222222 11111
lowQualScore : 2 2 333 2 2222 0 777777777 6666 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 0 0 1 4 4 77 11 8 1 0 3 3 444 4 0 55 6 888888888888888888888888888888888 0 555 7777 7777777777777777777 3 333333 55 11111
lowQualScore : . . ... . .... . ......... .... ....................................................................................... . . . . . .. .. . . . . . ... . . .. . ................................. . ... .... ................... . ...... .. .....
lowQualScore : 2 2 999 9 1111 2 888888888 5555 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 5 8 6 0 0 99 00 0 0 8 2 6 000 0 5 11 3 888888888888888888888888888888888 4 888 1111 4444444444444444444 6 222222 00 33333
consensus : CTAAATTAAA-ATATTGTTTGTTTGT-CC---TTTACCTACCCATCATTTTC-ATCT----TGGGT----A----GG----T--------A----------------A--------AT-------------TA--TTG------TA---------------C-------GTTTTGTCGGACATAACGTC-T-AATTATTACCTTTTCCTTGCACAT--TATCTCT--TT-AAANCGGCATAACCAGTA-ACTCGGC---CAATTC-CGTC-ANCCATC------GG-------A--A-T-GANACTG-TCGCTAGATATGTGCAAAGATATAA---ATG----CATATATGG---ACA-------TT-TTTT------TTT--TGTTGGAACCTNA---TTTTATGG
Reference ( family-613 ) : CTAAATTAAA-ATATTGTTTGTTTGT-CC---TTTACCTACCCATCATTTTC-ATCT----TGGGT----A----GG----T--------A----------------A--------AT-------------TA--TTG------TA---------------C-------GTTTTGTCGGACATAACGTC-T-AATTATTACCTTTTCCTTGCACAT--TATCTCT--TT-AAANCGGCATAACCAGTA-ACTCGGC---CAATTC-CGTC-ANCCATC------GG-------A--A-T-GANACTG-TCGCTAGATATGTGCAAAGATATAA---ATG----CATATATGG---ACA-------TT-TTTT------TTT--TGTTGGAACCTNA---TTTTATGG
gi|1 : TTCAA-ATATTGTTTTTTTTTTCC---TTGACCTATCCATCATTTTC-ATCT-------------------G----T--------G----------------A--------AT-------------TA--TTA------TA---------------T-------GT
gi|1 : agt-ACTCTGC---CAATTC-TGTC-AATCATT------GGTATTTAAA--A-G-AATACT---CGCTAAATATGTGCATAGATA--A---ATG----AAAATATTG---ACAA------CT-TTTT------TTT--TGTTGAAACCTGA---TTTTATAGaaattattatattacattttacattttgtttcgtaaatttttatgtagtgatcagtaattctaatatacaatttagctgtttcgccgatgggaattgtcttaaaatttctgattaaattgtatatactctgccaattctgtcaatcattggtatttaaaagaatactcgctaaatatgtgcatagataaatgaaaatattgacaactttttttttgttgaaacctgattttatagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|10 : agtttcaaatattgttttttttttccttgacctatccatcattttcatctgtgaattattatatgtaaattattatattacattttacattttgtttcgtaaatttttatgtagtgatcagtaattctaatatacaatttagctgtttcgccgatgggaattgtcttaaaatttctgattaaattgtatatA-ACTCGGT---CAATTC-TAT--A---ATC------GG-------C--ACT-AGAACGG-TTGCAAGACATGTGCAAAGATAAAAAATATGAAAAAATATTTAGTTTTCA-------TT-TTCA------TTT--AGTTTGAACCT-A---TTTannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|11 : gctgctttgctgacggaaattatcgtaaaattttcCTAAATGAAA-ATATCATTTGTTTGT-CC---TTCAACTACGTATCATTTTC-ATCT----TGGTT----A----GG----T--------AGTTAATTTATTATATAA--------ATA------------TA--TTT------TA---------------CATTTTTTGTTTTGTGGGAAATAACATC-T-TATTTTTACCTTTCCCTTGTACCT--TATCTCT--TTGAAAGCAGCATAACCAGTA-gtgtacatgagaagcaattaatggaacactgtag
gi|12 : CAGCATAAT------ACTTGGA---CAATTC-CACC-ATTCTTC------AGT------ATTA-T-AAAAATGGTTTCTAGA------CAAAAATATAA---ATG----CATACA--------A-------TT-TTCTTCTTAATTT--TGTTGAAATCT-A---TTT
gi|13 : gctgatttgctgatggaaattagagcaaaattgtttgattcCTAAATTAAA-ATAGTGTTTGTTTGT-CC---TTTACCTACCCGTCATTTTC-ATCT----TGGGTAGGCA----GG----T--------G----------------A--------AT-------------TC--TTA------TA------------------------TTTTGTAGGACATAACATC-T-ACCTATTACCATTTCCTTGCACAG--TATCTGT--TT-AA
gi|14 : taggcCTAAATTAAA-ATATTGTTTGTTTGT-CC---TTTACCTACCCATTA-TTTC-ATCTGAAGTAGGT----ATGTGGG----T--------A----------------A--------AT-------------TA--TCA------TA---------------ggtaacaataa
gi|15 : gtAAATTAAG-ATATTGTTTGTTTGT-CC---TTGACCTACCCGTCATTTCC-ATCT--------------------------------------------------A--------AT-----------------TTG------T------------------------GTTTTGTCGGACATAAGGTCAT-AAttatactttaccttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntag
gi|16 : accgG-TTATTAGATGTGTGCAAAGAAATAG---ATT----CATTTATGG---ACAAATATTGTT-TTTTCA----TTT--TGTTGAAACATGATATTTTTATaacacnnnnnnnnnnnnnnnnnnnnnnnnntaattgttaccatttccttgcacattatct
gi|17 : tgCTAAATTAAG-ATATTGTTTGTTTGT-CC---TTTACCTACTGATCATTTTC-ATCT----TGGGT----A----GG----T--------A----------------A--------GTAGGTAAATAATTATA--TTGTAATTTTA---------------T-------ATTTTGTCAGAAATAACATC-T-AATTATTACCTTTTCCTTGCATAC--TATatataagaagtcgtttatgggggaaaatagtattgctagtaaaagaaaaattgtcaaaaga
gi|18 : aggcAAA-ATAATGTTTGTCTGT-CCATACTTACCTACCTACC
gi|19 : ttgaatattattcatcattttaacaacaacaaataataaaattatttctttgaaagttgcataaaatttattagagtaaggcaatattgtcaTCTGT---CAATTC-CGCC-ATCCTTC------GG-------T--A-T-A----TG----------AAGTGCTTCGATATAC---ATA----AATATATGG---ACG-------CC-TCTTGCTA--TTA--TGTTGAAACTTAA---tttttcgac
gi|2 : gctgcttcgctgacggaaaatgtcataaaatcttcgatttaatggtatttaCTAAATTAAA-ATATTGTTTGTTTGT-CG---TTTACCTACCCATCATTTTC-ATCT----TGGGT----A----GG----T--------A----------------A--------AT-------------TA--TTG------T----------------C-------ATTTTGTCAGACATAACATC-T-AATTATTACCTTTTCCTTGCACAT--TATCTCT--TT-AAAACAGCATAACCAGTA-ACTCAGCTTACAATTC-CATCAAACCATT------GG-------A--A---GATAC-G-T------GTATGTGTAAAGATATTA---ATG----CATACATGG---ACA-------TT-TTTT------TTT--TGTTGGAGCCTTA---TTTTAAGG
gi|20 : CTAAAATAAA-ATATTGGTTGTTTGT-CC---TTTACCTACCTACCAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|22 : atattgaatatccaatagtttggcagcaacaaataaaaacattatttttttagcaatgcaatgaaatgattagagaagagactatattatt-ACTCGGC---AATTTC-CGT------ATC--------------------------CTA--CGTTATACATGTGCAAAGATGTAG---ATG----CTTTT-----------------TT-TTCT------ATT--TGTTGGAACgcct
gi|23 : gctgctccactgccggaactatcggaaacttaccgactcagttgcatatGCTAGATATGTGCAAAGATGTAA---ATG----ata
gi|24 : agttgcattgttgacggaaattatggtaaaaattccgatttaatcgtttatacatgtacctgatcattttataatccttcagttattgtcttaaaatTAATTCAAATATATTGTTTATTTGT-CT---TT---------------------CT----TGGGT----A----GG----T--------AGGTA------------A--------AT-------------TA--TTA------TATTTTATTATATTTTAC-------ATTTTGTCAGAAA-AA-GCC-T-AATTATTACTTCTTCCTTACACAT--TATC
gi|26 : cctCTAAAATAAA-ATGTTGTTTGTTTGT-CC---TTTACCTACCTACCc
gi|27 : gc-ACTTGGG---GAATTC-CATC-AACCATC------AG-------AT-A-A-GAAAG-G-TCTCTAGATATGTGCAAAGATAtgatgatattgtcactactcttataattttattgcaaatcattgccaaaatgttggataatatccaa
gi|29 : gctgtttcgctgaaggaaactatcataaaactactgtttaaattgaatatATTAAA-ATATTGT----TTGT-CC---TTTACCTACTCATCATTTTC-ATCT----TGGGT----A----GG----T--------A----------------A--------AT-------------TA--TTA------TATTTAAAATTTTG---T-------GTTTTGTCGGACATAACGTC-T-A
gi|3 : ATTTCTGATT-AAATTG-CATA-TTATTATACTCAGTTGTCAATTC-TGCC-ATCCATCAATATTGG-------A--A-T-G-----G-TTGCTAGGTATGTGCAAAGATATAA---ATG----CTT-------------------TT-TATT------GTTGCTGTTGGAACCTAT---TTTTATGGg
gi|31 : tagctgggtcactgactaaaaattatcgtaaaAGA-ATATTGTTTGTTTGT-CT---TTTACCTTCACAACATTTTTAATCTTAAATAGGT----A----GGTAGTT--------A----------------A--------AT-------------TA--TTA------TA------------------------TTTTatatgagaaaccgtttatggagcattgtaggaaaaaaaagtgttgcaaaggaaataaacaaaaaagtataattcctgtcacggtatttgaacttttatcgcccaagcgacaatctgcagatata
gi|33 : TAAATTAAA-ATATTGTATGTTTGT-AT---TTTACCTACCCATCTTTTTC-ATCT----TTGAT----A----ctacattttgatttttggt
gi|4 : aggtt-ACTTGGC---CAATTC-CATC-ACCTATT------GG-------T--A-TTGGGACTG-TCTCTAGATATTTGCAAATATATTA---ATG----CATTTATGGAA-ACA-------TTGTTGT------TGT--TGTTGGAATCTAA---ATTTATGGtattacttaggttagtagataattgtatt
gi|40 : ccttgctgatggaaattatcataaaatttcagattagattgtatacAAATTTAA-AT----TTTGTTTGT-CC---ATTACCTATCCATCATTTTC-ATCT----TTGGT----A----GG----T--------A----------------nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|42 : tgaggcca----T--------A----------------C--------AT-------------T---TTG------T------------------------GTTTTGTCAGACA-AAAGTC-TTAATTAGTACCTTTTCCTTGCAGAT--Tggtagataaatt
gi|43 : ttatatcatattt--TTG------T------------------------GTTTTGTTTGACATTACGCC-T-AATCATTATCTTTTCCTTGCACtt
gi|5 : aagatatcaacaaatgct-ACTCGGC---CAATTCACTNN-NNNNNNN------NN-------N--N-N-NNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNN---NNN----NNNNNNNAG---ACAATT----TT-CTTT------TTT--TGTTGGAACCTCA---ATTTATGG
gi|52 : acgaaaattattgtaacatttttaactaattcgtaaatCTAAATTAAA-ATATTGTTTGTTTGT-CC---TTTACTTGCCCATCATTTTC-ATAT----Tannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaga
gi|55 : agtAAAGATATAA---ATG----CATATATGG---ACA--------A-TTTT------TTT--TGTAGAAATCT
gi|58 : TAAAC-AAA-ACATTGTTTGTTTTT-CC---TTTACCTAC
gi|9 : ctAAA-ATATAATTTGTTTGT-CC---TTTACCTACCCGTTATTTTC-ATCT----TGGGT----A----GG----TGGGAAGGTA----------------AGATATTATAT-------------TACATTT------TA---------------CATTTTGTGTTTTGTCAGACATAATGTC-T-AATTATTACCTTTTCCTTGCACATTATATATCT--TT-AAATCGGCATTACCAGTA-ACTat
blockSeqs : T . ATA A GAAG AGGCA TAGT GGGAAGGTAAGATATTATATTACATTTTACATTTTGT C A T TA GA . A C T TTA A CA T AGTATTATAAAAATGGTTT AAT AAAA TTATGGACAAATATTG G TCTTAA GC GATAT
blockSeqs : . . . . TAAA ATGTG . AGTTAATTTATTATATAAATATATTTTACATTTTTT G . . . . . T T . TGT . C T GGCACTAGAACGGTTG . . ATTTAGTTTTCA . GCTA . AA
blockSeqs : . . . . . A . AAGTAGGTAAATAATTATATTGTAATTTTAT C . . . . . T C . . . C A AATATTGGAATGGTTG . . NNNNAGACAATT . CA . TA
blockSeqs : . . . . . A . AGGTAAATTATTATATTTTATTATATTTTAC C . . . . . . . . . C A GGTATTGGGACTGTCT . . TTATGGAAACA . . . AT
blockSeqs : . . . . . A . AAATTATTATATTTAAAATTTTGT C . . . . . . C T AGATAAGAAAGGTCT . . ATATGGACG . . . AA
blockSeqs : . . . . . A . GAATTCTTATA A . . . . . . C C NNNNNNNNNNNNNNN . . ACATGGACA . . . CA
blockSeqs : . . . . . A . AAATTATTGTC C . . . . . N N GGAAGATACGT . . ATATGGACA . . . A
blockSeqs : . . . . . A . AAATTATTATA T . . . . . . . GGTATATG . . ACAA . . . A
blockSeqs : . . . . . A . ACATTTTGT . . . . . . . . CTACG . . TT . . .
blockSeqs : . . . . . A . AATTTGT . . . . . . .
blockSeqs : . . . . . A . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . .
blockSeqs : . . .
blockSeqs : . . .
blockSeqs : . . .
blockSeqs : . . .
blockSeqCons : A******** GGTATTAGAACGGTCG***************** NTATGGACA**********
originalCons : CTAAATTAAA-ATATTGTTTGTTTGT-CC---TTTACCTACCCATCATTTTC-ATCT----TGGGT----A----GG----T--------A----------------A--------AT-------------TA--TTG------TA---------------C-------GTTTTGTCGGACATAACGTC-T-AATTATTACCTTTTCCTTGCACAT--TATCTCT--TT-AAANCGGCATAACCAGTA-ACTCGGC---CAATTC-CGTC-ANCCATC------GG-------A--A-T-GANACTG-TCGCTAGATATGTGCAAAGATATAA---ATG----CATATATGG---ACA-------TT-TTTT------TTT--TGTTGGAACCTNA---TTTTATGG
finalCons : CTAAATTAAA-ATATTGTTTGTTTGT-CC---TTTACCTACCCATCATTTTC-ATCT----TGGGTA--------GG----T--------A----------------A--------AT-------------TA--TTG------TA---------------C-------GTTTTGTCGGACATAACGTC-T-AATTATTACCTTTTCCTTGCACAT--TATCTCT--TT-AAANCGGCATAACCAGTA-ACTCGGC---CAATTC-CGTC-ANCCATCGGTATTAGAACGGTCG-----------------CTAGATATGTGCAAAGATATAA---ATG----CATNTATGGACA----------TT-TTTT------TTT--TGTTGGAACCTNA---TTTTATGG
29 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTTTTTTTTTATTGGACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAG
Unaligned ( gi|7 ): TTCCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATTTTTTTTTTTTGGAACCTCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAA
Unaligned ( gi|8 ): GCTGCTCCCCTAACGAACATTATTGTAAAATTTCCAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAACAAATACATTTTTTCCATTTTGTTGGAACATATTTTTTTGGATATGAGAATCCATTTAAGGAGCACTTT
Unaligned ( gi|21 ): CCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGACAAATATTTTTTTTTCTATTTTGTTTGAACATATATTTTTTGGATAAAAGAAGCCATTAATGGAGCC
Unaligned ( gi|25 ): TTTTATTTTGTTGGAGCATATATCTGTTTTCGATATGAGAAGCCGTTGAAGAAGTAATGCCGAACACAGTAGTGTTTTAGGGGAAATTAGCAAAAAGGATAATGTTTGTCATGTGATTCG
Unaligned ( gi|28 ): GTTGATGGAGCACTATAAGAAAAATAGTGTTGCTAGGGTAATAATTAAACAATATCTTGTTACAGGATTCACACTCGGCTCGAACGAGCTACACTCCGCA
Unaligned ( gi|30 ): AGTTAATACAGATATGCCAATTAAATACTCTGCTGACAGAAATCATCATAAAATTTCCGATTAAATTGTATACATGTATTTTCAGTCATTTCCGTCA
Unaligned ( gi|32 ): CCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGCTTTTATTGTTGTTGGAAACTGATTTTAT
Unaligned ( gi|34 ): GTAATTCTAATATGCAAATAAGCTGCTCTTTTAACTGAAATTATCCTAAAATTTCTGATGATATTCCCGCATACATTTATTGCAGTCG
Unaligned ( gi|35 ): CTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGACAAACATTTTTTTCATTTTATTGGA
Unaligned ( gi|36 ): TGTTTTTCATTTTTGATGGAACATACTTTTTTTGGCTATGAGAGACAGTTTATTAAGAACTGTGCATAAGAAAAAATAGTTTTGCA
Unaligned ( gi|37 ): CCGTTATTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGCAAATATATTTGTCAGTTTTGTT
Unaligned ( gi|38 ): GCAGCTTCAGTGACGACGGAAATTGTCGTTACATTTTCGATTCAATCGTTTATATTCGGCCAGCTTTCAGGATTAGAACGGTTGC
Unaligned ( gi|39 ): GCTGTTTCGCTGATGGAAATTATTGTAAAACTTCTGATTAAATGCTACATACCGGTACTTGCCCAATTCCTTCATC
Unaligned ( gi|41 ): CTGATGTTCAAATCAACTGCTTCGCTGACGGAAATTATCGGTAAACTTTTAATCAAATCCGCATATTAGTC
Unaligned ( gi|44 ): GCTGCTTCGCTGACAGAAATTATCGTAAAATTTCTATTTCAAACATATATATGCTCTGCCAATT
Unaligned ( gi|45 ): TGTTCTGCTGGCGGAAATTATTGTAAAATTTTCGATAAATTGAACAATTATACTCGACCAAT
Unaligned ( gi|46 ): ACTAGATACTTCGCTGACGAAAATTATCGTAAAATTTCCGATTCAGTTGTATGCATTCGAC
Unaligned ( gi|47 ): ACTGCTTCGCTTACGGAAATAATCGTAAAATTTCCGAATCAATTGTATAAACTCGGCACA
Unaligned ( gi|48 ): ACCCAATTTTATGGATAGAAGAAACCATTTATGGAGCACTAAGGGAAAAATATAGTGT
Unaligned ( gi|49 ): TTCTCTGCTGAGGGAAATTATAGTAAAATTTCTGATTTGATCATATATACTCTGCC
Unaligned ( gi|50 ): GCTATGCTGGTGGAAATTATTGTAAAATTTCTGATTCATTGTGTATACTCAGCCAA
Unaligned ( gi|51 ): TGTTTCGCTGACAGAAATTATTGTAAAATTTCCGTTTAATAGTATATACTCAACC
Unaligned ( gi|53 ): TGTTTTGCCGACAGAAATTATCATAAAATTTCCAATCATATACAGTTCTAT
Unaligned ( gi|54 ): AGGTCTAAAATAAAATATTGTTTATTTATCATTAACCACGATAATATTGT
Unaligned ( gi|56 ): ATATTTCATTATATCAACATTATAATTGCCTTTTAATCATATA
Unaligned ( gi|57 ): TGTTTTAAACTTCTGTTCTCCAGAACAAGAATTTATTTGGT
Unaligned ( gi|59 ): GCTTTACTGATGGAAGTTATCATAAAATTTCTGATT
Unaligned ( gi|60 ): GCTGCTACGCTGACGGAAATCATCGAAACATT
Alignments
lowQualScore : 1111 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 11 111 22222222222222222 222222 11111
lowQualScore : 2 2 333 2 2222 0 777777777 6666 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 0 0 1 4 4 77 11 8 1 0 3 3 444 0 3 4 2 5 99999999 3 66666 3 555 999999 1 77777777777777777 3 333333 11111
lowQualScore : . . ... . .... . ......... .... ....................................................................................... . . . . . .. .. . . . . . ... . . . . . ........ . ..... . ... ...... . ................. . ...... .....
lowQualScore : 2 2 999 9 1111 2 888888888 5555 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 5 8 6 0 0 99 00 0 0 8 2 6 000 8 3 2 4 2 44444444 3 11111 1 888 666666 0 44444444444444444 6 222222 33333
consensus : CTAAATTAAA-ATATTGTTTGTTTGT-CC---TTTACCTACCCATCATTTTC-ATCT----TGGGT----A----GG----T--------A----------------A--------AT-------------TA--TTG------TA---------------C-------GTTTTGTCGGACATAACGTC-T-AATTATTACCTTTTCCTTGCACAT--TATCTCT--TT-AAANCGGCATAACCAGTA-ACTCGGC---CAATTCCGTC-ANCCATCGGTATT----A---GA-ACGGTCGC-TAGATATGTGCAAAGATATAA---ATG------CATNTA-TGG--ACA-------TT-TTTT------TTTTGTTGGAACCTNA---TTTTATGG
Reference ( family-613 ) : CTAAATTAAA-ATATTGTTTGTTTGT-CC---TTTACCTACCCATCATTTTC-ATCT----TGGGT----A----GG----T--------A----------------A--------AT-------------TA--TTG------TA---------------C-------GTTTTGTCGGACATAACGTC-T-AATTATTACCTTTTCCTTGCACAT--TATCTCT--TT-AAANCGGCATAACCAGTA-ACTCGGC---CAATTCCGTC-ANCCATCGGTATT----A---GA-ACGGTCGC-TAGATATGTGCAAAGATATAA---ATG------CATNTA-TGG--ACA-------TT-TTTT------TTTTGTTGGAACCTNA---TTTTATGG
gi|1 : TTCAA-ATATTGTTTTTTTTTTCC---TTGACCTATCCATCATTTTC-ATCT-------------------G----T--------G----------------A--------AT-------------TA--TTA------TA---------------T-------GT
gi|1 : agt-ACTCTGC---CAATTCTGTC-AATCATTGGTATTTAAAA---GA-ATACTCGC-TAAATATGTGCATAGATA--A---ATG------AAAATA-TTG--ACAA------CT-TTTT------TTTTGTTGAAACCTGA---TTTTATAGaaattattatattacattttacattttgtttcgtaaatttttatgtagtgatcagtaattctaatatacaatttagctgtttcgccgatgggaattgtcttaaaatttctgattaaattgtatatactctgccaattctgtcaatcattggtatttaaaagaatactcgctaaatatgtgcatagataaatgaaaatattgacaactttttttttgttgaaacctgattttatagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|10 : agtttcaaatattgttttttttttccttgacctatccatcattttcatctgtgaattattatatgtaaattattatattacattttacattttgtttcgtaaatttttatgtagtgatcagtaattctaatatacaatttagctgtttcgccgatgggaattgtcttaaaatttctgattaaattgtatatA-ACTCGGT---CAATTCTAT--A---ATCGGCACT----A---GA-ACGGTTGC-AAGACATGTGCAAAGATAAAAAATATGAAAAAATATTTAGTTT--TCA-------TT-TTCA------TTTAGTTTGAACCT-A---TTTannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|11 : gctgctttgctgacggaaattatcgtaaaattttcCTAAATGAAA-ATATCATTTGTTTGT-CC---TTCAACTACGTATCATTTTC-ATCT----TGGTT----A----GG----T--------AGTTAATTTATTATATAA--------ATA------------TA--TTT------TA---------------CATTTTTTGTTTTGTGGGAAATAACATC-T-TATTTTTACCTTTCCCTTGTACCT--TATCTCT--TTGAAAGCAGCATAACCAGTA-gtgtacatgagaagcaattaatggaacactgtag
gi|12 : CAGCATAAT------ACTTGGA---CAATTCCACC-ATTCTTCAGTATT----ATAAAA-ATGGTTTC-TAGA------CAAAAATATAA---ATG------CATACA--------A-------TT-TTCTTCTTAATTTTGTTGAAATCT-A---TTT
gi|13 : gctgatttgctgatggaaattagagcaaaattgtttgattcCTAAATTAAA-ATAGTGTTTGTTTGT-CC---TTTACCTACCCGTCATTTTC-ATCT----TGGGTAGGCA----GG----T--------G----------------A--------AT-------------TC--TTA------TA------------------------TTTTGTAGGACATAACATC-T-ACCTATTACCATTTCCTTGCACAG--TATCTGT--TT-AA
gi|14 : taggcCTAAATTAAA-ATATTGTTTGTTTGT-CC---TTTACCTACCCATTA-TTTC-ATCTGAAGTAGGT----ATGTGGG----T--------A----------------A--------AT-------------TA--TCA------TA---------------ggtaacaataa
gi|15 : gtAAATTAAG-ATATTGTTTGTTTGT-CC---TTGACCTACCCGTCATTTCC-ATCT--------------------------------------------------A--------AT-----------------TTG------T------------------------GTTTTGTCGGACATAAGGTCAT-AAttatactttaccttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntag
gi|16 : accgGGTTAT-TAGATGTGTGCAAAGAAATAG---ATT------CATTTA-TGG--ACAAATATTGTT-TTTTCA----TTTTGTTGAAACATGATATTTTTATaacacnnnnnnnnnnnnnnnnnnnnnnnnntaattgttaccatttccttgcacattatct
gi|17 : tCTAAATTAAG-ATATTGTTTGTTTGT-CC---TTTACCTACTGATCATTTTC-ATCT----TGGGT----A----GG----T--------A----------------A--------GTAGGTAAATAATTATA--TTGTAATTTTA---------------T-------ATTTTGTCAGAAATAACATC-T-AATTATTACCTTTTCCTTGCATAC--TATatataagaagtcgtttatgggggaaaatagtattgctagtaaaagaaaaattgtcaaaaga
gi|18 : aggcAAA-ATAATGTTTGTCTGT-CCATACTTACCTACCTACC
gi|19 : ttgaatattattcatcattttaacaacaacaaataataaaattatttctttgaaagttgcataaaatttattagagtaaggcaatattgtcaTCTGT---CAATTCCGCC-ATCCTTCGGTATA----T---GA-A--GT-GCTTCGATAT--------ACATAA-------------ATATA-TGG--ACG-------CC-TCTTGCTA--TTATGTTGAAACTTAA---tttttcgac
gi|2 : gctgcttcgctgacggaaaatgtcataaaatcttcgatttaatggtatttaCTAAATTAAA-ATATTGTTTGTTTGT-CG---TTTACCTACCCATCATTTTC-ATCT----TGGGT----A----GG----T--------A----------------A--------AT-------------TA--TTG------T----------------C-------ATTTTGTCAGACATAACATC-T-AATTATTACCTTTTCCTTGCACAT--TATCTCT--TT-AAAACAGCATAACCAGTA-ACTCAGCTTACAATTCCATCAAACCATTGG-A------A---GATACG--TG------TATGTGTAAAGATATTA---ATG------CATACA-TGG--ACA-------TT-TTTT------TTTTGTTGGAGCCTTA---TTTTAAGG
gi|20 : CTAAAATAAA-ATATTGGTTGTTTGT-CC---TTTACCTACCTACCAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|22 : atattgaatatccaatagtttggcagcaacaaataaaaacattatttttttagcaatgcaatgaaatgattagagaagagactatattatt-ACTCGGC---AATTTCCGT--ATCC--------T----A-----------CGT-TATACATGTGCAAAGATGTAG---ATG------CTTTT-----------------TT-TTCT------ATTTGTTGGAACgcct
gi|23 : gctgctccactgccggaactatcggaaacttaccgactcagttgcatatTCCTTC-AGTTATTG-TCTT----A---AA-ATG----C-TAGATATGTGCAAAGATGTAA---ATG------ata
gi|24 : agttgcattgttgacggaaattatggtaaaaattccgatttaatcgtttatacatgtacctgatcattttataaTAATTCAAATATATTGTTTATTTGT-CT---TT---------------------CT----TGGGT----A----GG----T--------AGGTA------------A--------AT-------------TA--TTA------TATTTTATTATATTTTAC-------ATTTTGTCAGAAA-AA-GCC-T-AATTATTACTTCTTCCTTACACAT--TATC
gi|26 : cctCTAAAATAAA-ATGTTGTTTGTTTGT-CC---TTTACCTACCTACCc
gi|27 : gc-ACTTGGG---GAATTCCATC-AACCATCAG-ATA----A---GA-AAGGTCTC-TAGATATGTGCAAAGATAtgatgatattgtcactactcttataattttattgcaaatcattgccaaaatgttggataatatccaa
gi|29 : gctgtttcgctgaaggaaactatcataaaactactgtttaaattgaatatATTAAA-ATATTGT----TTGT-CC---TTTACCTACTCATCATTTTC-ATCT----TGGGT----A----GG----T--------A----------------A--------AT-------------TA--TTA------TATTTAAAATTTTG---T-------GTTTTGTCGGACATAACGTC-T-A
gi|3 : ATTTCTGATT-AAATTG-CATA-TTATTATACTCAGTTGTCAATTCTGCC-ATCCATCAATATT----G---GA-ATGGTTGC-TAGGTATGTGCAAAGATATAA---ATG------CTTTT-----------------TA-TTGT------TGCTGTTGGAACCTAT---TTTTATGGg
gi|31 : tagctgggtcactgactaaaaattatcgtaaaAGA-ATATTGTTTGTTTGT-CT---TTTACCTTCACAACATTTTTAATCTTAAATAGGT----A----GGTAGTT--------A----------------A--------AT-------------TA--TTA------TA------------------------TTTTatatgagaaaccgtttatggagcattgtaggaaaaaaaagtgttgcaaaggaaataaacaaaaaagtataattcctgtcacggtatttgaacttttatcgcccaagcgacaatctgcagatata
gi|33 : TAAATTAAA-ATATTGTATGTTTGT-AT---TTTACCTACCCATCTTTTTC-ATCT----TTGAT----A----ctacattttgatttttggt
gi|38 : aggttATTCGGCC-AGCTTTCAGGATT----A---GA-ACGGTTGC-tattacttaggttagtagataattgtatt
gi|4 : gcagcttcagtgacgacggaaattgtcgttacattttcgattcaatcgtttat-ACTTGGC---CAATTCCATC-ACCTATTGGTATT----G---GG-ACTGTCTC-TAGATATTTGCAAATATATTA---ATG------CATTTA-TGGAAACA-------TTGTTGT------TGTTGTTGGAATCTAA---ATTTATGG
gi|40 : ccttgctgatggaaattatcataaaatttcagattagattgtatacAAATTTAA-AT----TTTGTTTGT-CC---ATTACCTATCCATCATTTTC-ATCT----TTGGT----A----GG----T--------A----------------nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|42 : tgaggcca----T--------A----------------C--------AT-------------T---TTG------T------------------------GTTTTGTCAGACA-AAAGTC-TTAATTAGTACCTTTTCCTTGCAGAT--Tggtagataaatt
gi|43 : ttatatcatattt--TTG------T------------------------GTTTTGTTTGACATTACGCC-T-AATCATTATCTTTTCCTTGCACtt
gi|5 : aagatatcaacaaatgct-ACTCGGC---CAATTCACTN-NNNNNNNNNNNNN----N---NN-NNNNNNNN-NNNNNNNNNNNNNNNNNNNNN---NNN------NNNNNN-NAG--ACAATT----TT-CTTT------TTTTGTTGGAACCTCA---ATTTATGG
gi|52 : acgaaaattattgtaacatttttaactaattcgtaaatCTAAATTAAA-ATATTGTTTGTTTGT-CC---TTTACTTGCCCATCATTTTC-ATAT----Tannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaga
gi|55 : agtAAAGATATAA---ATG------CATATA-TGG--ACA--------A-TTTT------TTTTGTAGAAATCT
gi|58 : TAAAC-AAA-ACATTGTTTGTTTTT-CC---TTTACCTAC
gi|9 : ctAAA-ATATAATTTGTTTGT-CC---TTTACCTACCCGTTATTTTC-ATCT----TGGGT----A----GG----TGGGAAGGTA----------------AGATATTATAT-------------TACATTT------TA---------------CATTTTGTGTTTTGTCAGACATAATGTC-T-AATTATTACCTTTTCCTTGCACATTATATATCT--TT-AAATCGGCATTACCAGTA-ACTat
28 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTTTTTTTTTATTGGACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAG
Unaligned ( gi|7 ): TTCCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATTTTTTTTTTTTGGAACCTCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAA
Unaligned ( gi|8 ): GCTGCTCCCCTAACGAACATTATTGTAAAATTTCCAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAACAAATACATTTTTTCCATTTTGTTGGAACATATTTTTTTGGATATGAGAATCCATTTAAGGAGCACTTT
Unaligned ( gi|21 ): CCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGACAAATATTTTTTTTTCTATTTTGTTTGAACATATATTTTTTGGATAAAAGAAGCCATTAATGGAGCC
Unaligned ( gi|25 ): TTTTATTTTGTTGGAGCATATATCTGTTTTCGATATGAGAAGCCGTTGAAGAAGTAATGCCGAACACAGTAGTGTTTTAGGGGAAATTAGCAAAAAGGATAATGTTTGTCATGTGATTCG
Unaligned ( gi|28 ): GTTGATGGAGCACTATAAGAAAAATAGTGTTGCTAGGGTAATAATTAAACAATATCTTGTTACAGGATTCACACTCGGCTCGAACGAGCTACACTCCGCA
Unaligned ( gi|30 ): AGTTAATACAGATATGCCAATTAAATACTCTGCTGACAGAAATCATCATAAAATTTCCGATTAAATTGTATACATGTATTTTCAGTCATTTCCGTCA
Unaligned ( gi|32 ): CCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGCTTTTATTGTTGTTGGAAACTGATTTTAT
Unaligned ( gi|34 ): GTAATTCTAATATGCAAATAAGCTGCTCTTTTAACTGAAATTATCCTAAAATTTCTGATGATATTCCCGCATACATTTATTGCAGTCG
Unaligned ( gi|35 ): CTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGACAAACATTTTTTTCATTTTATTGGA
Unaligned ( gi|36 ): TGTTTTTCATTTTTGATGGAACATACTTTTTTTGGCTATGAGAGACAGTTTATTAAGAACTGTGCATAAGAAAAAATAGTTTTGCA
Unaligned ( gi|37 ): CCGTTATTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGCAAATATATTTGTCAGTTTTGTT
Unaligned ( gi|39 ): GCTGTTTCGCTGATGGAAATTATTGTAAAACTTCTGATTAAATGCTACATACCGGTACTTGCCCAATTCCTTCATC
Unaligned ( gi|41 ): CTGATGTTCAAATCAACTGCTTCGCTGACGGAAATTATCGGTAAACTTTTAATCAAATCCGCATATTAGTC
Unaligned ( gi|44 ): GCTGCTTCGCTGACAGAAATTATCGTAAAATTTCTATTTCAAACATATATATGCTCTGCCAATT
Unaligned ( gi|45 ): TGTTCTGCTGGCGGAAATTATTGTAAAATTTTCGATAAATTGAACAATTATACTCGACCAAT
Unaligned ( gi|46 ): ACTAGATACTTCGCTGACGAAAATTATCGTAAAATTTCCGATTCAGTTGTATGCATTCGAC
Unaligned ( gi|47 ): ACTGCTTCGCTTACGGAAATAATCGTAAAATTTCCGAATCAATTGTATAAACTCGGCACA
Unaligned ( gi|48 ): ACCCAATTTTATGGATAGAAGAAACCATTTATGGAGCACTAAGGGAAAAATATAGTGT
Unaligned ( gi|49 ): TTCTCTGCTGAGGGAAATTATAGTAAAATTTCTGATTTGATCATATATACTCTGCC
Unaligned ( gi|50 ): GCTATGCTGGTGGAAATTATTGTAAAATTTCTGATTCATTGTGTATACTCAGCCAA
Unaligned ( gi|51 ): TGTTTCGCTGACAGAAATTATTGTAAAATTTCCGTTTAATAGTATATACTCAACC
Unaligned ( gi|53 ): TGTTTTGCCGACAGAAATTATCATAAAATTTCCAATCATATACAGTTCTAT
Unaligned ( gi|54 ): AGGTCTAAAATAAAATATTGTTTATTTATCATTAACCACGATAATATTGT
Unaligned ( gi|56 ): ATATTTCATTATATCAACATTATAATTGCCTTTTAATCATATA
Unaligned ( gi|57 ): TGTTTTAAACTTCTGTTCTCCAGAACAAGAATTTATTTGGT
Unaligned ( gi|59 ): GCTTTACTGATGGAAGTTATCATAAAATTTCTGATT
Unaligned ( gi|60 ): GCTGCTACGCTGACGGAAATCATCGAAACATT