lowQualScore : 33333333333333333333333333333 111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 999999999999999999999999 33333333333 1 222 777777777777777777777777777777777 222222222222 111 33333333333333333 1 4444444444444444444444444444 1111 3333 1 111111 777777777777 2222 111 66666666666666666666666666 666666666666666 1 22 1 2 1 6666 1 1 111 1 1 11 2222 11111 11 1 11111 1 888888 2 1 222222222222222222 1 333333 1 1 22222 333 22 66666666666666666666666666666 22 222 111 1 444444444444444444444444444444444444444444444444444444444444444444444444
lowQualScore : 8 0 555555555555555555555555 77 00000000000 5 5 777 2 111111111111111111111111111111111 8888888888 0 5 999999999999 2 5 999 3 88888 0 2 4 33333333333333333 4 2 8888888888888888888888888888 7 888 9999 0 55 0000 6 0000 2 3 9 444444 777777777777 1111 44 55 5 0 999 4 0 9 77777777777777777777777777 888888888888888 9 5 2 88 1 5 1 6 6 5 0000 0 6 2 444 5 8 0 33 8 5 33 0 6666 0 88888 22 4 7 88 0 4 66666 5 444444 3 0 1 3 999999999999999999 4 7 1 7 222222 7 5 4 99999 3 000 44 22222222222222222222222222222 6 11 4 111 4 666 3 5 4 333333333333333333333333333333333333333333333333333333333333333333333333 7 9 6
lowQualScore : . . ........................ .. ........... . . ... . ................................. .......... . . ............ . . ... . ..... . . . ................. . . ............................ . ... .... . .. .... . .... . . . ...... ............ .... .. .. . . ... . . . .......................... ............... . . . .. . . . . . . .... . . . ... . . . .. . . .. . .... . ..... .. . . .. . . ..... . ...... . . . . .................. . . . . ...... . . . ..... . ... .. ............................. . .. . ... . ... . . . ........................................................................ . . .
lowQualScore : 4 4 333333333333333333333333 55 00000000000 0 0 444 2 111111111111111111111111111111111 8888888888 4 0 222222222222 5 0 000 1 00000 1 0 0 33333333333333333 1 3 3333333333333333333333333333 9 888 8888 4 66 6666 0 8888 0 8 1 444444 111111111111 2222 55 66 2 2 999 0 8 8 33333333333333333333333333 111111111111111 3 3 3 22 0 0 4 0 6 0 8888 8 4 6 000 0 0 8 44 3 3 00 7 3333 2 00000 88 0 3 77 5 0 77777 0 333333 7 3 0 3 333333333333333333 0 0 0 0 777777 0 0 0 55555 0 000 00 55555555555555555555555555555 0 00 0 000 0 000 0 0 7 000000000000000000000000000000000000000000000000000000000000000000000000 3 0 7
consensus : NACGATAAAGTTCATGATAC-----GNATTCCAATAA----AAAACTGTACGTATCAGATACGTATAC-AAATTCC-CCAAT-TACGGAAATAAATATAG-------------------AGAA----------GCAAGC---A-AA---GAT-TAA------TTGTC-ACAA-TCCTT-ATAATGTTCTACGGCAGA-ACGCGCAT-AN----------------CTAAAGTTGAAAG--C-GT---T--CCCC-T-ATTTGCTTATAGTA---GAGTCG--TCCTATACGCTATT----ATGG--ACTGTTCTATTNATAAAA------TAGGTGTAT-A--A---ATCTTT----CATGCATGCTATTTTCCCGCC--GTTTGTCAAAAACATAATAAATATGGCGTC-AAACAATTTGACT-----ATTGGCGATTTCTTCTA--------------CTAGCTTAGCAAAGTCCATTGTGACA-AAATTCTGCATAACATGATAACGTCAGCT----GTTAAACTTGCCGAGAAGCAAAAATCCAAACACA---CAGATA-AATTATAAATTAAAC-GGACGATAT-NG-TCCC-ATGTGGGCCCCGGAAAATATGC--AACCCAAAATTGTNTGNTTT-TTTGTTTGCAGAATATTTTAC-T----AAAGTTTANT-AGG-GTTGGAAAATTCAACTCGTCCANGATTAAGTTTAATTTGTATGCAGAATAT----T-TTACATAAAGTTTACAGTACTGTNATAAATTANCACGAAGACCAAAATANTTTGCATTAGACCATTGACATTTAAATTGTTTAAACGGTCAAAGAATCGTGGCTTGNTGAATTNAGNNNGACCATTGNAAATGACGAAAAAA---TG-------------TATGG-----------TTA-CTAGT-------CCT-ACAGGGCGAGTG----ATCTACAAAATAATTTTACAGCCCTGC
Reference ( gi|1 ) : CATAATAAAGTTTATGATAC-----ATATTCCAATAATTTTAATACTGTACACATCAGATATATATACAAAATTGC-CCAATGTATGGAAATAAATATAG-------------------AGAA----------GCAAGC---A-AA---GAT-TAA------TTGCC-ACAA-TCC-T-ATAATGCTCTACGGCGGA-ACGCGTAT-AC----------------CTAAAATTTAAAG--T-TT---T--TCCT-T-ATTTGGTTGTAGTA---GAATCA--TCCTATACACTATT----ATAG--CATGTCCTATTTATTAAA------TAGGTG----A--A---GTCTTT----CATATATGCTATTTTTCCGCA--GTTTGCCAAAAACATAATAAATATGGCGCCCAAACAATTTGACT-----ATTAGTGATTTCTTCTA--------------CTAGCTTAGTAAAGTCCATAGTGACACGAATTTTTCACAACACGATTACCTCAGCTCTTAATTAAACTAGCTGAGATGCAAAAATCCAAACACA---CAGATA-AGTTATAAACTAATCTGGATGACAT-TGATCCC-ATATGGGCCCTGGAAAATATGCACAACCCAAAATTATGTGATTTTTTTGTTTGAAGAATATTTTACTTTTAAAAAGTTTACTCAAG-GTTATAAAATTCAACTCCTCTAAGATTTAATTTAATTTGTATGAAGAATAT----T-TTACAAAAAGTTTACAGTCCTATTAT-AA--AACACAAAGA-C-AAAT-TTTTG--TT------------TTT----------AACGGTCAAAGAACCATCACTTGTTGAATTTAGCTCGATCATTGAAACTGACAAAAAA----TG-------------TATGG-----------TCA-TTAGT-------CCA-ACAGGACGAGTGTTGAATCTACAAAATAATTTTGCACCCCTGCTATATATATCTCATTGAAGATACTGTCAACTTCT
gi|15 : ATGATATCATTAATGATAT-----A-AT----ATANNNNNNNNNNAATACGTATCAGATTCATATACAA--TTTCGCCAATATACAGACATAAATATAGA------------------AGAAAGAGTAATATGTAAAC---A-AA---G-----A------TTGTC-ACAATTCT-T-ATAATGCTCTACAG--------------------------------CTAAAATTGAAAGCAT-TT---C--CCCC-A-ATTTG
gi|2 : aAATGAAGTTGAGGATAC-----TGATT---ATGATC--AA-ACTGTACATAGCAGATACATATACAAA-TTCC-TCATTAAACAAAAATAGATATAT-------------------A--A----------GCAAAC---A------GTT-TAA------TCATG-A-AA-TCC-TTGTAATGCTATACGGCAGACATGCTTA--AC----------------TTAAA-TTGAAAG--TGTT---T--TCCCAT-ATTTGCTTAAACTA---GAGTC-----CTATACACCACT----ATGG--ACTGTCCTGTTTATAAAA------TATGTGTAT-G--A---ATCATT----CATGCATGCTATTTTCCCGCC--ATTTACCAAAAACATAATAAATATGGTGTCAAAGCTATT-GACTTATCAATTTGCAATTTTTTGTA--------------TTAG-TCAATGAA---CA----GATAT--ATTCTGCATGGCATGATTACATCAGCTGTTAA---AATT-GCTGGGTAGCAAAAACCCAAACGCA---CAGGTA-AGTTATAAATTAAACTGGACGATAA-AGCTCTC-ATGTGGGACCCGGAAAATATGCCAAACCCAAAAATGTTTAATTT-----TTTGCAGACTATTTTAC----ATAAAGTTTACT-AGG-GTTGGAAAATTCAACTCGTCCACAATTAAGTTTAAATTGTATGCAGAATATGACATATGACATAAAATTTACAGTct
gi|3 : catttctgctgcaaataggacatgtacccatgtaaattacgccagtgattaAAGAAAGTAAGTGATATGGATTATATTCCAA-------AATACTGTATGTATTTGATATA-------AATTCT-CCAATGTACAGAAATAAATATAG-------------------AGAA----------GCAAGC---A-TA---GAT-TAA------TTGTC-GCAA-TCC-T-ATAATGTTCTATAGTGGA-ACATGCAT-AA----------------CTAAAATTGAAAG--T-GTGACC--CCCC-T--TTTGCTTATTGTG---GAGTCG--TCCTAAATGCTATTTATAATGG--ACTGTCCTATTTATAAAT------TAGGTGT---ATTA---ATCTTT----CATACATGCTA-TTTTCCACT--GTTTGTCAAAATCATATTAAATATGGTGTCCAAACAA-TTGACT-----ACTGGTGATTTTTTCTA--------------CAAGTATAGCAAAGTCCATTGTGATA--AAATCTGCATGACATGGTTa
gi|4 : tgatgttatttaccgcatgggagtgtaaaattccactcgtatttgtgagttgatttcactgggttgagtaaagatttgcaaatactcaaccagctgggtgagtcagtttttgctccagacaggccacgtatccacataatttacccaAATAA-GATCATGATAC-----GAATTATATTAA----AAAACTGTACATATCAGATACATATAT-AGGTTCC-CCAA--TACGGAAATAAATATAA-------------------AG------------GCAAGCGTTA-AA---TAT-AAA---------CCAAGAA-TCCTT-ATAATGTTCCACGACAAA-ACGAGTAT-Ataaataagattatgtcagctgtc
gi|5 : ctttttatctttatattttggtacatagtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatattttcaatatagcgaatcccaatttaacgttttaattcgatgttcatatcagggtgttaaattctactaaattttagtggggtgagtgaagatctgtaaatacccgactggctgggcgggtccgtttttacaccagatggccacgtatccgcataatttacacaAATAA-GATCATGATAC-----GGATTATATTAA----AAAACTGTACATATCAGATACATATAT-AGGTTCC-CCAA--TACGAAAATAAATATAA-------------------AG------------GCAAGC---GTAA---AATATAA--------ACCAAGAA-TCCTT-ATAATGTTCCACGACAAA-ACGAGTA
gi|6 : tttttatctttatattttggtacatagtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatattttcaatatagcgaatcccaatttaacgttttaattcgatgttcatatcagggtgttaaattctactaaattttagtggggtgagtgaagatctgtaaatacccgactggctgggcttgtccgtttttacaccagatggccacgtatccgcataatttacacaAATAAAGTTCATGATACGGTTTATATTCCAATA---------CTGTACCTAGCA-------------AATTCC-CCAAT--ATGGAAATGAATATAGC------------------AGCA----------GTGGAA---A-AATATAAT-TAAACTTTGTTGTC-GCAA-TCCTT-ACAATGTTCTGCAGAACA-ACGCACAT-AA----------------CT----TATAGA------------------T-ATT--GTC-TA-------AATTG--TTCTGTAAACTATT----ACGG--GCTGTTCTA------AAAAACATGTAGGTGAATAA--A---TTATTT----CATGCATGATATTTTCCCACC--ACTTATCAAAATCATAAT
gi|16 : gggtcgtaaaattccactcgcccactcacattcgatttcacaggggcgagtggagatttataaatactctgatgaccaggtgagtcagtttttgctctagataggccacgtattcacgtaatttacacaAATAAAATTCATGATAC-----AACTTCC----ATTCCAAAGTTGTACGTATCAGATATGTTTAT-AAATTCT-CTAA--CACGGAAACAA--ATAA-------------------AGAA----------ACAAGC---
gi|8 : cagtgaagatatgtaaatactcgaccgactgggcgagtcagtttttgctccagataggccaTACTGTTTGTATCAGATACGTA--CCAACTTTC-TTAAT--ATGGAAATAAATATAGTTTTTGTCTCAACAATCGTAAAAT---------GTAAA----A-AA---GAT-TTG------TTGTC-ACAA-TCC-TTAAAATGGTCTATCACAGA-ACACGCTT-AA----------------CTAATATTGAAAG--C-TT---T--TCCC-CCGCTTGCATGCAGTA---GAATTG--TCCAATACATTGTT----ATGG--ACTTTTTTATTTACAAAA------TAGGTATAT-A--A---ATCTTT----CATGCATGCTGTATTCCC-CATTGTCTCTCAAAATCATAAAAAATAg
gi|11 : gattatactccatAAAC---A-AA---GAT-TAG------TT----ACAA-------GTAATGTTCTACAGCAGA-ACACGCATAACTTTAAACACCCCATAACTAAAGTTGAAAG--T-GT---T--TCCC-T-gcactatttgcgatttttt
gi|12 : actACGGCACC-ATGCGCAT-GA----------------CTCAAATTGAAAA--A-CT---T--TCCTAT-AAATA-TTGTA-TAAATGGACTAGGTCC-ATACCTTATT----ATGGACCAT--TCTATTAAA-AAA------TAGATG---------------TT------TGTTTGCT-------TGCT--GTTTGTCAAAAACAGAA---ATATGGCCTCAAAACAATTGAA---------TAGTGATTTCTTT-------------------G--TAAAAAAGTCTATTACGACACAAATATTccccaccccacaccctgcccccccctccataggatgactatacgctataatggactgttccatttataaaataggtgtattaatctttcatgcatgctattttcatgccatttgtcgaatacatagtaaatacggcgtccaaataattgactatgggcagtttcatctaaaaaaggaacacttactag
gi|9 : AT-AC----------------CTAAAGTTGAAAG--C-GT---TAACCCC-A-ATTTA-CAATAGTA---GAGTCA--TCCTATAATCTATT----ATGG--ACTGTTCTATTAATGAAA------TAGGTG----T--ATTGATCTTTCGCACATGTAGGCTTTTTTCCTGCT--GTTTGTCAAAAACATAAAAAAAATGGC---------ATTTG------------GTGATTTCTTCTATAAAGGAACACCTGCTAGCTTTGCAAAGTCCATTGTGACAGAAATTCTGCA-AACATGATAACATCAGCT----GTTAAACTTGCTGAGACACAAAAATCTAAACACA---CA-ATA-GATTATAACTTAAgactgaaacgataatgataatttaatgtcatct
gi|10 : ccatgAT-AC----------------CTAAAGTTGAAAG--C-GT---TAACCCC-A-ATTTA-CAATAGTA---GAGTCA--TCCTATAATCTATT----ATGG--ACTGTTCTATTAATGAAA------TAGGTG----T--ATTGATCTTTCGCACATGTAGGCTTTTTTCCTGCT--GTTTGTCAAAAACATAA-AAAAATGGC---------ATTTG------------GTGATTTCTTCTATAAAGGAACACCTGCTAGCTTTGCAAAGTCCATTGTGACAGAAATTCTGCA-AACATGATAACATCAGCT----GTTAAACTTGCTGAGACACAAAAATCTAAACACA---CA-ATA-GATTATAACTTAA
gi|11 : ccatgTA---GGATGA----CTATACGCTATA----ATGG--ACTGTTCCATTTATAAAA------TAGGTGT---ATTA---ATCTTT----CATGCATGCTATTTTCATGCC--ATTTGTCGAATACATAGTAAATACGGCGTCCAAATAA-TTGACT-----ATGGGCAGTTTCATCTA--------------
gi|19 : actaaacaaagattagttacaagtaatgttctacagcagaacacgcataactttaaacaccccataactaaagttgaaagtgtttccctccccaccccacaccctgcccccccctccaCTA--------------ATAGCTAAGCAAAGTCCATAGTGACA-GAAATTTGCAAAGCATGATAATGTCAGCT----ATTAAACTTGCCGAGAAGCAAAAATCCAAGTATA---CATGTACAATT-CAGACTAAAC--GAT-ACATATG-TCCCAATA-GGGCaaaaaggaacacttactag
gi|21 : TTAAACTAGCCGAGAAGCAAAAATCCAAACACACTGCAGATA-AGTTACAAATCAATCGGGACAATAT-GGATCCC-A-----------GAAAATATGCGCAACCCAAAAT
gi|13 : gTCAC-ATGTGGACCCTGGA------------CTCAAAATTATATGTTTTATTTGTTTGCAGAATATTTTACAT------AGTTTTTCTAAGAGTTTGGAAATTCAACTCGTCCAAGATTAAATTTAATTTGTATAAAGAATAT----T-TTACATAAAGTTTACAGTACTATTAT-AATTACCATGAAGA-CAAAATATTTTG--
gi|7 : TTTTTATTTGCAGTATATTTTACTT----AAAATTTAATGAGG-ATTGGAA--------------AGGATTAAGGTTATTTTATATGCAGAATAT----T-TTACATAAAGTTTACAGTACTGTAATAAA--AACACAAAGACC-AAAT-ATTTGCATTAGACCATTGACATTTAAATTGTTTAAACAGTCAAAGAATCATGGCTTGTTGAATTAAGCTTGACCATTGCAAATGGCAAAAAAAAGGTGAGTGACAATTTACTATGGGCAACTAGATTTTA-TTGGTCACTTGTCCT-ACAGTGCGAGTG----GTCTAC-AAATAATATTACAGCCCTGCataagatcattgtaatataagttattttaacggtca
gi|14 : CGGTCAAAGAATCGTGGCTTGAT---TTTAGAGGGATCATTGAAAATGACTAAAAA----TG-------------TAAGG-----------c
gi|14 : GACGAGAAGAC--TT-------------TATTG-----------TTAACTAG--------CCATACAGGGCAAATG----ATCTACAAAATAACTTTCCAGCCCTGgcgagtgacaatttactataaaggacgagaagactttattgttaactagccatacagggcaaatgatctacaaaataactttccagccctgatcactcgagtattgatatatat
gi|17 : cggtcaaagaatcgtggcttgattttagagggatcattgaaaatgactaaaaatgtaagggcgagtgacaatttactataaagAAT----TG-------------T-TGG-----------TCA-CTAGT-------CCT-ACAGGGCGAGT--T--ATCTTCAAAATAATTTCACACCCCTGatcactcgagtattgatatatat
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|18 ): CTCCGGATAGGACAGGTATCCACATAGTTTATGCAAATAAATTTTAAAGTACATGTATAGATTACATTTTGATACTGTATGTATGAATAACCATGTAAATACCCCAATATGTAGGTAAGTAAAGAACCATGCTTTAA
Unaligned ( gi|20 ): GTGGTGTTAAATTCCACTCTGCTTGCATTTTGCAAGTTGATTTTACAGTGGGGGAGTTCAGATCTGTAAATACTAGACTGGCCAGGCAAGTCAGTTTTTGCTCCAGATAAGCCACGTATCCA
Unaligned ( gi|22 ): GGTGTAAAATTCCATGTGGGCAAGATGAATTAACTTCGGGTTGAGTGAAGACGTGTAAATACTCAACTGGCCAGGCAAGTCTGTTTTTGTA
Unaligned ( gi|23 ): ATCAGTGCTTGATAGGCCACATATACATGTAATTTATGCATTATATTACGGATTATATTTCAATATCGTATGTATCAAAT
Unaligned ( gi|24 ): AACAAGGAGTGACAATTCATCACGGGCAAACATGATTTATTGGTCACTCATCCTACA
Unaligned ( gi|25 ): AAAATAAGATCAATGTTGAATGTTTACCGATAAAAACCAT
Alignments
lowQualScore : 111111 22222222 22 5555555555555555555555555555555555 111 111111111 222222222222222222 444444444444444444444444 2222222222 11111 1111 6666666666666666666666666 55555555555555 2 111 1 111111 11111 1111 111 1 33333333333333 33333333 11 11 4444444 333 222222 222 11 22 222222222222222 1111111111 11 9999999999999999999999999999999999999999999999999 1111
lowQualScore : 555555 4 5 22222222 8 7 0 4 66 66 9999999999999999999999999999999999 444 777 444444444 33 1 4 2 0 999999999999999999 2 44 000000000000000000000000 3333333333 1 4 4 3 3 55 9999 2 0 11111 6 4 8888 0 4 2 1 4 4444444444444444444444444 1 88888888888888 66 1 0 2 000 1 0 666666 44444 0 2222 0 3 111 0 6 4 66666666666666 3 0 3 33333333 0 1 44 33 0 8888888 44 777 0 3 2 0 1 2 222222 0 1 7 999 1 0 33 7 11 999999999999999 6666666666 0 1 6 1 333 0 1 66 6666666666666666666666666666666666666666666666666 1 7777 3 0 2
lowQualScore : ...... . . ........ . . . . .. .. .................................. ... ... ......... .. . . . . .................. . .. ........................ .......... . . . . . .. .... . . ..... . . .... . . . . . ......................... . .............. .. . . . ... . . ...... ..... . .... . . ... . . . .............. . . . ........ . . .. .. . ....... .. ... . . . . . . ...... . . . ... . . .. . .. ............... .......... . . . . ... . . .. ................................................. . .... . . .
lowQualScore : 333333 3 9 77777777 9 2 8 4 11 11 1111111111111111111111111111111111 000 888 666666666 77 1 6 3 7 000000000000000000 1 66 444444444444444444444444 9999999999 0 4 4 7 7 66 4444 6 8 11111 9 4 9999 1 4 7 7 9 2222222222222222222222222 4 88888888888888 99 9 1 9 000 7 9 444444 33333 4 1111 7 3 777 8 7 0 88888888888888 2 2 2 88888888 7 0 33 22 2 2222222 22 555 2 2 5 2 0 5 222222 7 0 3 777 0 7 33 3 33 333333333333333 7777777777 7 0 7 0 000 7 0 00 0000000000000000000000000000000000000000000000000 0 0000 2 8 5
consensus : NNNNATAAAGTTCATGATACG-----GATTACANT--AA----AAAACTGTACGTATCAGATACGTATACAAA-TTCCCCAAT-TA--CGGAAATAAATATAG-------------------A-GAA----------GCAAGC---AAA---GATTAA------TCGTCACAATCCTTATAATGTTCTACGGCAGAACGCGCATAA-----------------CTAAAATTGAAAGCGT-----T--CCC----CNAT-----TTGCNT--------ATAG-TA-GAGTCGTCCTATACGCTATT----ATGGACTGTTCTATTTATAAAA-----TAGGTGTATNAATC-TTT----CATGCATGCTAT-TTTCCCGCCGTTTGTCAAAAACATAATAAATATGGCG-T-C-AAA-CAA-TTGACT-----ATTGGCGATTTCTTCTA--------------CTAGCTTAGCAAAGTCCATTGTGACA-GA---ATTCTGCACGACACG------ATA-----ACGTCAGCT----GTTAAACTTGCCGAGACGCAAAAATCCAAACACA---CAGATA-AGTTATAAATTAANCTGG-ACGACAT-G-TCCCATGTGGGCCCCGGAAAATAT--G--C--AACCCAAAATTATNTG-TTTT-TTTGTTTGCAGAATATTTTAC-TT----AAAGTTTACTC--AGGGTTGGAAAATTCAACTCGTCCAAGATTAAGTTTAATTTGTATGNAGAATAT----T-TTACATAAAGTTTACAGTACTATTATAAA--AACACGAAGACCAAAATATTTTG-ATTAGACCATTG--ATTTAAGTTGTTT-AACGGTCAAAGAATCGTGGCTTGTTGAATTTAGCTCGATCATTGNAAATGACGAAAAAA---TG-------------TATGG-----------TCA-CTAG-------TCCTACAGGGCGAGTG----ATCTACAAAATAATTTTACANCCCTGC
Reference ( family-5610 ) : NACGATAAAGTTCATGATACG-----NATTCCAAT--AA----AAAACTGTACGTATCAGATACGTATACAAA-TTCCCCAAT-TA--CGGAAATAAATATAG-------------------A-GAA----------GCAAGC---AAA---GATTAA------TTGTCACAATCCTTATAATGTTCTACGGCAGAACGCGCATAN-----------------CTAAAGTTGAAAGCGT-----T--CCC----CTAT-----TTGCTT--------ATAG-TA-GAGTCGTCCTATACGCTATT----ATGGACTGTTCTATTNATAAAA-----TAGGTGTATAAATC-TTT----CATGCATGCTAT-TTTCCCGCCGTTTGTCAAAAACATAATAAATATGGCG-T-C-AAA-CAATTTGACT-----ATTGGCGATTTCTTCTA--------------CTAGCTTAGCAAAGTCCATTGTGACA-AA---ATTCTGCATAACATG------ATA-----ACGTCAGCT----GTTAAACTTGCCGAGAAGCAAAAATCCAAACACA---CAGATA-AATTATAAATTAAAC-GG-ACGATATNG-TCCCATGTGGGCCCCGGAAAATAT--G--C--AACCCAAAATTGTNTG-NTTT-TTTGTTTGCAGAATATTTTAC-T-----AAAGTTTANT---AGGGTTGGAAAATTCAACTCGTCCANGATTAAGTTTAATTTGTATGCAGAATAT----T-TTACATAAAGTTTACAGTACTGTNATAAATTANCACGAAGACCAAAATANTTTGCATTAGACCATTGACATTTAAATTGTTTAAACGGTCAAAGAATCGTGGCTTGNTGAATTNAGNNNGACCATTGNAAATGACGAAAAAA---TG-------------TATGG-----------TTA-CTAG-------TCCTACAGGGCGAGTG----ATCTACAAAATAATTTTACAGCCCTGC
gi|1 : ATAAAGTTTATGATACA-----TATTCCAAT--AATTTTAATACTGTACACATCAGATATATATACAAAATTGCCCAATGTA--TGGAAATAAATATAG-------------------A-GAA----------GCAAGC---AAA---GATTAA------TTGCCACAATCCT-ATAATGCTCTACGGCGGAACGCGTATAC-----------------CTAAAATTTAAAGTTT-----T--TCC----TTAT-----TTGGTT--------GTAG-TA-GAATCATCCTATACACTATT----ATAGCATGTCCTATTTATTAAA-----TAGGTG---AAGTC-TTT----CATATATGCTAT-TTTTCCGCAGTTTGCCAAAAACATAATAAATATGGCGCC-C-AAA-CAATTTGACT-----ATTAGTGATTTCTTCTA--------------CTAGCTTAGTAAAGTCCATAGTGACACGA---ATTTTTCACAACACG------ATT-----ACCTCAGCTCTTAATTAAACTAGCTGAGATGCAAAAATCCAAACACA---CAGATA-AGTTATAAACTAATCTGG-ATGACATTGATCCCATATGGGCCCTGGAAAATAT--GCAC--AACCCAAAATTATGTGATTTT-TTTGTTTGAAGAATATTTTAC-TTTTAAAAAGTTTACTC--AAGGTTATAAAATTCAACTCCTCTAAGATTTAATTTAATTTGTATGAAGAATAT----T-TTACAAAAAGTTTACAGTCCTATTATAA---AACACAAAGAC--AAAT-TTTTG--TT------------TTT----------AACGGTCAAAGAACCATCACTTGTTGAATTTAGCTCGATCATTGAAACTGAC-AAAAAA---TG-------------TATGG-----------TCA-TTAG-------TCCAACAGGACGAGTGTTGAATCTACAAAATAATTTTGCACCCCTGC
gi|10 : cataATAC-----------------CTAAAGTTGAAAGCGT-----TAACCC----CAAT-----TTACA---------ATAG-TA-GAGTCATCCTATAATCTATT----ATGGACTGTTCTATTAATGAAA-----TAGGTGTATTGATC-TTTCGCACATGTAGGCTTT-TTTCCTGCTGTTTGTCAAAAACATAA-AAAAATGGCA-T-----------------------TTGGTGATTTCTTCTATAAAGGAACACCTGCTAGCTTTGCAAAGTCCATTGTGACAGAA---ATTCTGCA-AACATG------ATA-----ACATCAGCT----GTTAAACTTGCTGAGACACAAAAATCTAAACACA---CA-ATA-GATTATAACTTAAtatatatatctcattgaagatactgtcaacttct
gi|11 : ccatgAAAC---AAA---GATTA---------GTTACAA-----GTAATGTTCTACAGCAGAACACGCATAACTTTAAACACCCCATAACTAAAGTTGAAAGTGTTTCCCT--CCCCACCCCACACC--CTGCCCCCCCCTCCATAG-GATGA------CTATACGCTATA----ATGGACTGTTCCATTTATAAAA-----TAGGTGTATTAATC-TTT----CATGCATGCTAT-TTTCATGCCATTTGTCGAATACATAGTAAATACGGCG-TCC-AAA-TAA-TTGACT-----ATGGGCAGTTTCATCTA--------------
gi|12 : actACGGCACCATGCGCATGA-----------------CTCAAATTGAAAA-AC-----T--TTC----CTATAAATATTG--T--------ATAAATG-GACTAGGTCCATACCTTATT----ATGGACCATTCTATTAA-AAAA-----TAGATGT-----------------------TTGT-TTGCTTGCTGTTTGTCAAAAAC---AGAAATATGGCC-T-CAAAA-CAA-TTGAAT-----A---GTGATTTCTTT-------------------G--TAAAAAAGTCTATTACGACACAA---ATATTGACTGAAACG------ATA-----ATGaaaaaggaacacttactag
gi|13 : -TCACATGTGGACCCTGGA----------------CTCAAAATTATATG-TTTTATTTGTTTGCAGAATATTTTAC-------ATAGTTT-TTCTAAGAGTTTGGAAATTCAACTCGTCCAAGATTAAATTTAATTTGTATAAAGAATAT----T-TTACATAAAGTTTACAGTACTATTAT-AATTACCATGAAGA-CAAAATATTTTG-ATAAGATCATTGTAATATAAGTTATTTTAACGGTCAataatttaatgtcatct
gi|14 : CGGTCAAAGAATCGTGGCTTGAT---TTTAGAGGGATCATTGAAAATGACT-AAAAA---TG-------------TA-----------------------------------AGGGCGAGTG----A
gi|14 : ACTATAAAGGACGAGAAGAC--TT-------------TATTG-----------TTAACTAG-------CCATACAGGGCAAATG----ATCTACAAAATAACTTTCCAGCCCTGcaatttactataaaggacgagaagactttattgttaactagccatacagggcaaatgatctacaaaataactttccagccctgatcactcgagtattgatatatat
gi|15 : cggtcaaagaatcgtggcttgattttagagggatcattgaaaatgactaaaaatgtaagggcgagtgacaatttTACGTATCAGATTCATATACAAT-TTCGCCAATATA--CAGACATAAATATAG-------------------AAGAAAGAGTAATATGTAAAC---AAA---GATT----------GTCACAATTCTTATAATGCTCTAC--------------AG-----------------CTAAAATTGAAAGCAT-----TTCCCC----CAAT-----TTGCTatcactcgagtattgatatatat
gi|16 : aatgatatcattaatgatataatatannnnnnnnnnaaATAAAATTCATGATACA-----ACTTCCATT--CC----AAAGTTGTACGTATCAGATATGTTTATAAA-TTCTCTAA--CA--CGGAAACAA--ATAA-------------------A-GAA----------ACAAGC---
gi|17 : cagtgaagatatgtaaatactcgaccgactgggcgagtcagtttttgctccagataggccaaAAT---TG-------------T-TGG-----------TCA-CTAG-------TCCTACAGGGCGAGTT----ATCTTCAAAATAATTTCACACCCCTGg
gi|19 : gaaacatgacatcttgaatgaaggaaccaaattgattgaaattataaaaacagaggttagtcagacctgtggtagtccCTA--------------ATAGCTAAGCAAAGTCCATAGTGACA-GA---AATTTGCAAAGCATG------ATA-----ATGTCAGCT----ATTAAACTTGCCGAGAAGCAAAAATCCAAGTATA---CATGTACAATT-CAGACTAAAC-GATAC-ATAT-G-TCCCAatcttgcatgtta
gi|2 : ATGAAGTTGAGGATACT-----GATTATGAT--CA----AA--CTGTACATAGCAGATACATATACAAA-TTCCTCA-T-TAAACAAAAATAGATATAT-------------------A---A----------GCAAAC---A-----GTTTAA------TCATGA-AATCCTTGTAATGCTATACGGCAGA-CATGCTTAA-----------------CTTAAATTGAAAGTGT-----TTTCCC----ATAT-----TTGCTT--------AAAC-TA-GAGTC---CTATACACCACT----ATGGACTGTCCTGTTTATAAAA-----TATGTGTATGAATC-ATT----CATGCATGCTAT-TTTCCCGCCATTTACCAAAAACATAATAAATATGGTG-T-C-AAAGCTATT-GACTTATCAATTTGCAATTTTTTGTA--------------TTAGT----CAA-------TG-AACA-GATATATTCTGCATGGCATG------ATT-----ACATCAGCT----GTTAAAATTGCTGGGTAGCAAAAACCCAAACGCA---CAGGTA-AGTTATAAATTAAACTGG-ACGATAAAGCTCTCATGTGGGACCCGGAAAATAT--G--CCAAACCCAAAAATGTTTA-ATTT-----TTTGCAGACTATTTTACAT-----AAAGTTTACT---AGGGTTGGAAAATTCAACTCGTCCACAATTAAGTTTAAATTGTATGCAGAATATGACATATGACATAAAATTTACAGTAatagggc
gi|21 : catttctgctgcaaataggacatgtacccatgtaaattacgccagtgattaa----GTTAAACTAGCCGAGAAGCAAAAATCCAAACACACTGCAGATA-AGTTACAAATCAATC-GG---GACA--------ATATGGATCCCAGAAAATATGCG--C--AACCCAAAAT
gi|3 : AAAGTAAGTGATATG-----GATTATATTCCAA----AATACTGTATGTATTTGATAT------AAA-TTCTCCAATGTA--CAGAAATAAATATAG-------------------A-GAA----------GCAAGC---ATA---GATTAA------TTGTCGCAATCCT-ATAATGTTCTATAGTGGAACATGCATAA-----------------CTAAAATTGAAAGTGTGAC--C--CCC----CT-T-----TTGCTT--------ATTG-TG-GAGTCGTCCTAAATGCTATTTATAATGGACTGTCCTATTTATAAAT-----TAGGTGTATTAATC-TTT----CATACATGCTAT-TTTCC-ACTGTTTGTCAAAATCATATTAAATATGGTG-TCC-AAA-CAA-TTGACT-----ACTGGTGATTTTTTCTA--------------CAAGTATAGCAAAGTCCATTGTGATA-AA---A-TCTGCATGACATGGTTTAAATAAGATTATGTCAGCT----GT
gi|4 : tgatgttatttaccgcatgggagtgtaaaattccactcgtatttgtgagttgatttcactgggttgagtaaagatttgcaaatactcaaccagctgggtgagtcagtttttgctccagacaggccacgtatccacataatttacccaaagAAGATCATGATACG-----AATTATATT--AA----AAAACTGTACATATCAGATACATATATAGG-TTCCCCAA--TA--CGGAAATAAATATAA-------------------A-G------------GCAAGCGTTAAA---TATAAA------CCA--AGAATCCTTATAATGTTCCACGACAAAACGAGTATAc
gi|5 : ctttttatctttatattttggtacatagtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatattttcaatatagcgaatcccaatttaacgttttaattcgatgttcatatcagggtgttaaattctactaaattttagtggggtgagtgaagatctgtaaatacccgactggctgggcgggtccgtttttacaccagatggccacgtatccgcataatttacacaaatAAGATCATGATACG-----GATTATATT--AA----AAAACTGTACATATCAGATACATATATAGG-TTCCCCAA--TA--CGAAAATAAATATAA-------------------A-G------------GCAAGCGTAAAA---TATAAA------CCA--AGAATCCTTATAATGTTCCACGACAAAACG
gi|6 : tttttatctttatattttggtacatagtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatattttcaatatagcgaatcccaatttaacgttttaattcgatgttcatatcagggtgttaaattctactaaattttagtggggtgagtgaagatctgtaaatacccgactggctgggcttgtccgtttttacaccagatggccacgtatccgcataatttacacaaatATAAAGTTCATGATACGGTTTATATTCCAAT-----------ACTGTACCTA------------GCAAA-TTCCCCAA--TA--TGGAAATGAATATAGC------------------A-GCA----------GTGGAA---AAATATAATTAAACTTTGTTGTCGCAATCCTTACAATGTTCTGCAGAACAACGCACATAA-----------------CTTA--TAGA----------------------TA------TTGTCT--------A--------AATTGTTCTGTAAACTATT----ACGGGCTGTTCTA-----AAAAACATGTAGGTGAATAAATTATTT----CATGCATGATAT-TTTCCCACCACTTATCAAAATCATAATagta
gi|7 : gggtcgtaaaattccactcgcccactcacattcgatttcacaggggcgagtggagatttataaatactctgatgaccaggtgagtcagtttttgctctagataggccacgtattcacgtaatttacacaaTT-TTTATTTGCAGTATATTTTAC-TT----AAAATTTAATG--AGGATTGGAAA--------------GGATTAAGGTTATTTTATATGCAGAATAT----T-TTACATAAAGTTTACAGTACTGTAATAAA--AACACAAAGACCAAA-TA-TTTGCATTAGACCATTGACATTTAAATTGTTTAAACAGTCAAAGAATCATGGCTTGTTGAATTAAGCTTGACCATTGCAAATGGCAAAAAAAAGGTGAGTGACAATTTACTATGGGCAACTAGATTTTA-TTGGTCACTTGTCCTACAGTGCGAGTG----GTCTAC-AAATAATATTACAGCCCTGC
gi|8 : ACTGTTTGTATCAGATACGTAC-CAAC-TTTCTTAAT--A--TGGAAATAAATATAGTTTTTGTCTCAACAATCGTA-AAAT---------GTAAA----AAA---GATTTG------TTGTCACAATCCTTAAAATGGTCTATCACAGAACACGCTTAA-----------------CTAATATTGAAAGCTT-----TT-CCC----CCGC-----TTGCAT--------GCAG-TA-GAATTGTCCAATACATTGTT----ATGGACTTTTTTATTTACAAAA-----TAGGTATATAAATC-TTT----CATGCATGCTGTATTCCCCATTGTCTCTCAAAATCATAAAAAATA--GC-----------------ACT-----ATTTGCGATTTTTTc
gi|9 : gattatactccattATAC-----------------CTAAAGTTGAAAGCGT-----TAACCC----CAAT-----TTACA---------ATAG-TA-GAGTCATCCTATAATCTATT----ATGGACTGTTCTATTAATGAAA-----TAGGTGTATTGATC-TTTCGCACATGTAGGCTTT-TTTCCTGCTGTTTGTCAAAAACATAAAAAAAATGGCA-T-----------------------TTGGTGATTTCTTCTATAAAGGAACACCTGCTAGCTTTGCAAAGTCCATTGTGACAGAA---ATTCTGCA-AACATG------ATA-----ACATCAGCT----GTTAAACTTGCTGAGACACAAAAATCTAAACACA---CA-ATA-GATTATAACTTAA
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): CTCCGGATAGGACAGGTATCCACATAGTTTATGCAAATAAATTTTAAAGTACATGTATAGATTACATTTTGATACTGTATGTATGAATAACCATGTAAATACCCCAATATGTAGGTAAGTAAAGAACCATGCTTTAA
Unaligned ( gi|20 ): GTGGTGTTAAATTCCACTCTGCTTGCATTTTGCAAGTTGATTTTACAGTGGGGGAGTTCAGATCTGTAAATACTAGACTGGCCAGGCAAGTCAGTTTTTGCTCCAGATAAGCCACGTATCCA
Unaligned ( gi|22 ): GGTGTAAAATTCCATGTGGGCAAGATGAATTAACTTCGGGTTGAGTGAAGACGTGTAAATACTCAACTGGCCAGGCAAGTCTGTTTTTGTA
Unaligned ( gi|23 ): ATCAGTGCTTGATAGGCCACATATACATGTAATTTATGCATTATATTACGGATTATATTTCAATATCGTATGTATCAAAT
Unaligned ( gi|24 ): AACAAGGAGTGACAATTCATCACGGGCAAACATGATTTATTGGTCACTCATCCTACA
Unaligned ( gi|25 ): AAAATAAGATCAATGTTGAATGTTTACCGATAAAAACCAT
Alignments
lowQualScore : 22222222 1 22 5555555555555555555555555555555555 111 111111111 222222222222222222 333333333333333333333333333 222222222222 11111 111111111 4444444444444444444444 55555555555555 1111111 11 111111 11111 1111 111 1 4444444444 333333333 1 1 2222 1 1 222222 1 222 6666666666666666666666 1 11 9999999999999999999999999999999999999999999999999 1111
lowQualScore : 0 1 22222222 0 8 1 4 77 55 4444444444444444444444444444444444 444 777 555555555 33 1 4 0 666666666666666666 0 33 777777777777777777777777777 111111111111 4 3 3 55 9999 1 11111 2 4 111111111 0 4 2 1 4 3 5555555555555555555555 1 88888888888888 66 1 0 8888888 1 88 1 666666 44444 0 2222 0 5 111 0 6 1 3 3333333333 3 0 3 000000000 3 1 3 0 0 4 1111 3 0 5 0 3 2 0 0 1 222222 7 3 0 888 7 7 0000000000000000000000 3 0 7 3 1 66 1111111111111111111111111111111111111111111111111 1 7777 3 0 1
lowQualScore : . . ........ . . . . .. .. .................................. ... ... ......... .. . . . .................. . .. ........................... ............ . . . .. .... . ..... . . ......... . . . . . . ...................... . .............. .. . . ....... . .. . ...... ..... . .... . . ... . . . . .......... . . . ......... . . . . . . .... . . . . . . . . . ...... . . . ... . . ...................... . . . . . .. ................................................. . .... . . .
lowQualScore : 7 0 00000000 9 0 3 0 55 55 8888888888888888888888888888888888 000 888 999999999 77 1 6 7 111111111111111111 9 00 222222222222222222222222222 444444444444 4 7 7 66 4444 9 11111 6 4 777777777 1 4 7 7 9 4 5555555555555555555555 4 88888888888888 99 9 1 4444444 7 11 4 444444 33333 4 1111 7 2 777 8 7 0 0 5555555555 2 2 2 888888888 2 0 3 0 2 0 2222 2 0 0 2 2 5 2 8 0 222222 3 3 7 777 3 3 0000000000000000000000 3 7 3 7 0 00 0000000000000000000000000000000000000000000000000 0 0000 2 8 0
consensus : NNNNATAAAGTTCATGATACGGATTATATT--NA----AATACTGTACGTATCAGATACGTATACAAA-TTCCCCAAT-TA--CGGAAATAAATATAG-------------------A-GAA----------GCAAGC---AAA---GATTAA------TCGTCACAATCCTTATAATGTTCTACGGCAGAACGCGCATA-----------------ACTAAAATTGAAAGCGT--T--CC---------CC---NAT---TTGCNT--------ATAGTA-GAGTCGTCCTATACGCTATT----ATGGACTGTTCTATTTATAAAA-----TAGGTGTATNAATC-TTT----C----ATGCATGCTAT-TTTCCCGCCGTTTGTCAAAAACATAATAAATATGGCGT-C-AAA-CAATT-GACT-----ATTGGCGATTTCTTCTA--------------CTAGCTTAGCAAAGTCCATTGTGACA-G-A---ATTCTGCAC-GACACG------ATA-----ACGTCAGCT----GTTAAACTTGCCGAGACGCAAAAATCCAAACACA---CAGATA-AGTTATAAATTAANCNGGACGATAT--A--TCCCATGTGGGCCCCGGAAAATAT--GC--A--ACCCAAAATTATATG-TTTT-TTTGTTTGCAGAATATTTTACNT----AAAGTTTA-CTNAGGGTTGGAAAATTCAACTCGTCCAAGATTAAGTTTAATTTGTATGNAGAATAT----T-TTACATAAAGTTTACAGTACTATTATAA-AAACACGAAGACC-AAATATTTTGATTAGACCATTG--AT-TAAGTTG-TTT-AACGGTCAAAGAATCGTGGCTTGTTGAATTTAGCTCGATCATTGNAAATGACGAAAAAA---TG-------------TATGGTC-A-CTAG-----------------TCCTACAGGGCGAGTG----ATCTACAAAATAATTTTACANCCCTGC
Reference ( family-5610 ) : NNNNATAAAGTTCATGATACGGATTACANT--AA----AAAACTGTACGTATCAGATACGTATACAAA-TTCCCCAAT-TA--CGGAAATAAATATAG-------------------A-GAA----------GCAAGC---AAA---GATTAA------TCGTCACAATCCTTATAATGTTCTACGGCAGAACGCGCATA-----------------ACTAAAATTGAAAGCGT--T--CC---------CC---NAT---TTGCNT--------ATAGTA-GAGTCGTCCTATACGCTATT----ATGGACTGTTCTATTTATAAAA-----TAGGTGTATNAATC-TTT----C----ATGCATGCTAT-TTTCCCGCCGTTTGTCAAAAACATAATAAATATGGCGT-C-AAA-CAATT-GACT-----ATTGGCGATTTCTTCTA--------------CTAGCTTAGCAAAGTCCATTGTGACA-G-A---ATTCTGCAC-GACACG------ATA-----ACGTCAGCT----GTTAAACTTGCCGAGACGCAAAAATCCAAACACA---CAGATA-AGTTATAAATTAANCTGGACGACAT--G--TCCCATGTGGGCCCCGGAAAATAT--GC--A--ACCCAAAATTATNTG-TTTT-TTTGTTTGCAGAATATTTTACTT----AAAGTTTA-CTCAGGGTTGGAAAATTCAACTCGTCCAAGATTAAGTTTAATTTGTATGNAGAATAT----T-TTACATAAAGTTTACAGTACTATTATAA-AAACACGAAGACCAAAATATTTTGATTAGACCATTG--ATTTAAGTTG-TTT-AACGGTCAAAGAATCGTGGCTTGTTGAATTTAGCTCGATCATTGNAAATGACGAAAAAA---TG-------------TATGGTC-A-CTAG-----------------TCCTACAGGGCGAGTG----ATCTACAAAATAATTTTACANCCCTGC
gi|1 : ATAAAGTTTATGATACATATTCCAAT--AATTTTAATACTGTACACATCAGATATATATACAAAATTGCCCAATGTA--TGGAAATAAATATAG-------------------A-GAA----------GCAAGC---AAA---GATTAA------TTGCCACAATCCT-ATAATGCTCTACGGCGGAACGCGTATA-----------------CCTAAAATTTAAAGTTT--T--TC---------CT---TAT---TTGGTT--------GTAGTA-GAATCATCCTATACACTATT----ATAGCATGTCCTATTTATTAAA-----TAGGTG---AAGTC-TTT----C----ATATATGCTAT-TTTTCCGCAGTTTGCCAAAAACATAATAAATATGGCGC-CCAAA-CAATTTGACT-----ATTAGTGATTTCTTCTA--------------CTAGCTTAGTAAAGTCCATAGTGACACG-A---ATTTTTCAC-AACACG------ATT-----ACCTCAGCTCTTAATTAAACTAGCTGAGATGCAAAAATCCAAACACA---CAGATA-AGTTATAAACTAATCTGGATGACATTGA--TCCCATATGGGCCCTGGAAAATAT--GC--ACAACCCAAAATTATGTGATTTT-TTTGTTTGAAGAATATTTTACTTTTAAAAAGTTTA-CTCAAGGTTATAAAATTCAACTCCTCTAAGATTTAATTTAATTTGTATGAAGAATAT----T-TTACAAAAAGTTTACAGTCCTATTAT-A-AAACACAAAGAC--AAAT-TTTTG-TT----------------------TTT-AACGGTCAAAGAACCATCACTTGTTGAATTTAGCTCGATCATTGAAACTGAC-AAAAAA---TG-------------TATGGTC-A-TTAG-----------------TCCAACAGGACGAGTGTTGAATCTACAAAATAATTTTGCACCCCTGC
gi|10 : cataATA-----------------CCTAAAGTTGAAAGCGT--TAACC---------CC---AAT---TTACA---------ATAGTA-GAGTCATCCTATAATCTATT----ATGGACTGTTCTATTAATGAAA-----TAGGTGTATTGATC-TTTCGCAC----ATGTAGGCTTT-TTTCCTGCTGTTTGTCAAAAACATAA-AAAAATGGCAT-----------------------TTGGTGATTTCTTCTATAAAGGAACACCTGCTAGCTTTGCAAAGTCCATTGTGACA-GAA---ATTCTGCA--AACATG------ATA-----ACATCAGCT----GTTAAACTTGCTGAGACACAAAAATCTAAACACA---CA-ATA-GATTATAACTTAAtatatatatctcattgaagatactgtcaacttct
gi|11 : ccatgAAAC---AAA---GATTA---------GTTACAA-----GTAATGTTCTACAGCAGAACACGCATAACTTTAAACACCCCATAACTAAAGTTGAAAGTGT--T--TCCCTCCCCACCC---CACACCCTGCCCCCCCCTCCATAGGATGA------CTATACGCTATA----ATGGACTGTTCCATTTATAAAA-----TAGGTGTATTAATC-TTT----C----ATGCATGCTAT-TTTCATGCCATTTGTCGAATACATAGTAAATACGGCGTCC-AAA-TAATT-GACT-----ATGGGCAGTTTCATCTA--------------
gi|12 : actACGGCACCATGCGCATG-----------------ACTCAAATTGAAAAACT--T--TC---------CTATAAATA--TTGTAT--------A-AATG-GACTAGGTCCATACCTTATT----ATGGACCATTCTA-TTAAAAAA-----TAGATGT---------------------------TTGT-TTGCTTGCTGTTTGTCAAAAAC---AGAAATATGGCCT-CAAAA-CAATT-GAAT-----A---GTGATTTCTTT-------------------G--TAAAAAAGTCTATTACGACACA-A---ATATTG-ACTGAAACG------ATA-----ATGaaaaaggaacacttactag
gi|13 : --TCACATGTGGACCCTGGA----------------CTCAAAATTATATG-TTTTATTTGTTTGCAGAATATTTTACAT----A--GTTTTTCTAAGAGTTTGGAAATTCAACTCGTCCAAGATTAAATTTAATTTGTATAAAGAATAT----T-TTACATAAAGTTTACAGTACTATTATAATTACCATGAAGA-CAAAATATTTTGATAAGATCATTGTAATATAAGTTATTTT-AACGGTCAataatttaatgtcatct
gi|14 : CGGTCAAAGAATCGTGGC---TTGATTTTAGAGGGATCATTGAAAATGACT-AAAAA---TG-------------TA-----------------------------------AGGGCGAGTG----A
gi|14 : TTACTATAAAGGACGAGAAGAC--TT-------------TATTGTT-AACTAG-----------------CCATACAGGGCAAATG----ATCTACAAAATAACTTTCCAGCCCTGcaatttactataaaggacgagaagactttattgttaactagccatacagggcaaatgatctacaaaataactttccagccctgatcactcgagtattgatatatat
gi|15 : cggtcaaagaatcgtggcttgattttagagggatcattgaaaatgactaaaaatgtaagggcgagtgacaatTACGTATCAGATTCATATACAAT-TTCGCCAATATA--CAGACATAAATATAG-------------------AAGAAAGAGTAATATGTAAAC---AAA---GATT----------GTCACAATTCTTATAATGCTCTACAG-------------------------------CTAAAATTGAAAGCAT--TTCCC---------CC---AAT---TTGCatcactcgagtattgatatatat
gi|16 : aatgatatcattaatgatataatatannnnnnnnnnaaATAAAATTCATGATACAACTTCCATT--CC----AAAGTTGTACGTATCAGATATGTTTATAAA-TTCTCTAA--CA--CGGAAACAA--ATAA-------------------A-GAA----------ACAAGC---t
gi|17 : cagtgaagatatgtaaatactcgaccgactgggcgagtcagtttttgctccagataggccaaAAT---TG-------------T-TGGTC-A-CTAG-----------------TCCTACAGGGCGAGTT----ATCTTCAAAATAATTTCACACCCCTGg
gi|18 : gaaacatgacatcttgaatgaaggaaccaaattgattgaaattataaaaacagaggttagtcagacctgtggtagtccTAAAGTACATG-TATAGATTACATT--TT----GATACTGTATGTATGA-ATAACCATGTAAA-TACCCCAA--TA--TGTAGGTAAGTAAAG-------------------A-atcttgcatgtta
gi|19 : ctccggataggacaggtatccacatagtttatgcaaataaatttCTA--------------ATAGCTAAGCAAAGTCCATAGTGACA-G-A---AATTTGCAA-AGCATG------ATA-----ATGTCAGCT----ATTAAACTTGCCGAGAAGCAAAAATCCAAGTATA---CATGTACAATT-CAGACTAAACGATAC-ATAT--G--TCCCAaccatgctttaa
gi|2 : ATGAAGTTGAGGATACTGATTATGAT--CA----AA--CTGTACATAGCAGATACATATACAAA-TTCCTCA-T-TAAACAAAAATAGATATAT-------------------A---A----------GCAAAC---A-----GTTTAA------TCATGA-AATCCTTGTAATGCTATACGGCAGA-CATGCTTA-----------------ACTTAAATTGAAAGTGT--TTTCC---------CA---TAT---TTGCTT--------AAACTA-GAGTC---CTATACACCACT----ATGGACTGTCCTGTTTATAAAA-----TATGTGTATGAATC-ATT----C----ATGCATGCTAT-TTTCCCGCCATTTACCAAAAACATAATAAATATGGTGT-C-AAAGCTATT-GACTTATCAATTTGCAATTTTTTGTA--------------TTAGT----CAA-------TG-AACA-G-ATATATTCTGCAT-GGCATG------ATT-----ACATCAGCT----GTTAAAATTGCTGGGTAGCAAAAACCCAAACGCA---CAGGTA-AGTTATAAATTAAACTGGACGATAA--AGCTCTCATGTGGGACCCGGAAAATAT--GCCAA--ACCCAAAA----ATG-TTTA-ATTTTTTGCAGACTATTTTACAT----AAAGTTTA-CT-AGGGTTGGAAAATTCAACTCGTCCACAATTAAGTTTAAATTGTATGCAGAATATGACATATGACATAAAATTTACAGTAatagggc
gi|21 : catttctgctgcaaataggacatgtacccatgtaaattacgccagtgattaa----GTTAAACTAGCCGAGAAGCAAAAATCCAAACACACTGCAGATA-AGTTACAAATCAATCGGGACA-------------ATATGGATCCCAGAAAATATGCGC--A--ACCCAAAAT
gi|3 : AAAGTAAGTGATATGGATTATATTCCAA----AATACTGTATGTATTTGATAT------AAA-TTCTCCAATGTA--CAGAAATAAATATAG-------------------A-GAA----------GCAAGC---ATA---GATTAA------TTGTCGCAATCCT-ATAATGTTCTATAGTGGAACATGCATA-----------------ACTAAAATTGAAAGTGTGAC--CC---------CC---CTT---TTGCTT--------ATTGTG-GAGTCGTCCTAAATGCTATTTATAATGGACTGTCCTATTTATAAAT-----TAGGTGTATTAATC-TTT----C----ATACATGCTAT-TTTCC-ACTGTTTGTCAAAATCATATTAAATATGGTGT-CCAAA-CAATT-GACT-----ACTGGTGATTTTTTCTA--------------CAAGTATAGCAAAGTCCATTGTGATA-A-A---A-TCTGCAT-GACATGGTTTAAATAAGATTATGTCAGCT----GT
gi|4 : tgatgttatttaccgcatgggagtgtaaaattccactcgtatttgtgagttgatttcactgggttgagtaaagatttgcaaatactcaaccagctgggtgagtcagtttttgctccagacaggccacgtatccacataatttacccaaagAAGATCATGATACGAATTATATT--AA----AAAACTGTACATATCAGATACATATATAGG-TTCCCCAA--TA--CGGAAATAAATATAA-------------------A-G------------GCAAGCGTTAAA---TATAAA------CCA--AGAATCCTTATAATGTTCCACGACAAAACGAGTATA-----------------c
gi|5 : ctttttatctttatattttggtacatagtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatattttcaatatagcgaatcccaatttaacgttttaattcgatgttcatatcagggtgttaaattctactaaattttagtggggtgagtgaagatctgtaaatacccgactggctgggcgggtccgtttttacaccagatggccacgtatccgcataatttacacaaatAAGATCATGATACGGATTATATT--AA----AAAACTGTACATATCAGATACATATATAGG-TTCCCCAA--TA--CGAAAATAAATATAA-------------------A-G------------GCAAGCGTAAAA---TATAAA------CCA--AGAATCCTTATAATGTTCCACGACAAAACG
gi|6 : tttttatctttatattttggtacatagtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatattttcaatatagcgaatcccaatttaacgttttaattcgatgttcatatcagggtgttaaattctactaaattttagtggggtgagtgaagatctgtaaatacccgactggctgggcttgtccgtttttacaccagatggccacgtatccgcataatttacacaaatATAAAGTTCATGATACGGTTTATATT--CC----AATACTGTACCTA------------GCAAA-TTCCCCAA--TA--TGGAAATGAATATAGC------------------A-GCA----------GTGGAA---AAATATAATTAAACTTTGTTGTCGCAATCCTTACAATGTTCTGCAGAACAACGCACATA-----------------ACT--TATAGATA-------------------------------TTGTCT--------A-------AATTGTTCTGTAAACTATT----ACGGGCTGTTCTA-----AAAAACATGTAGGTGAATAAATTATTT----C----ATGCATGATAT-TTTCCCACCACTTATCAAAATCATAATagta
gi|7 : gggtcgtaaaattccactcgcccactcacattcgatttcacaggggcgagtggagatttataaatactctgatgaccaggtgagtcagtttttgctctagataggccacgtattcacgtaatttacacaaTT-TTTATTTGCAGTATATTTTACTT----AAAATTTA-ATGAGGATTGGAA--------------AGGATTAAGGTTATTTTATATGCAGAATAT----T-TTACATAAAGTTTACAGTACTGTAATAA-AAACACAAAGACC-AAATATTTGCATTAGACCATTGACATTTAAATTG-TTTAAACAGTCAAAGAATCATGGCTTGTTGAATTAAGCTTGACCATTGCAAATGGCAAAAAAAAGGTGAGTGACAATTTACTATGGGCAA-CTAGATTTTATTGGTCACTTGTCCTACAGTGCGAGTG----GTCTAC-AAATAATATTACAGCCCTGC
gi|8 : GATTATACT--CC----ATTACTGTTTGTATCAGATACGTAC-CAAC-TTTCTTAAT--A--TGGAAATAAATATAGTTTTTGTCTCAACAATCGTA-AAAT---------GTAAA----AAA---GATTTG------TTGTCACAATCCTTAAAATGGTCTATCACAGAACACGCTTA-----------------ACTAATATTGAAAGCTT--TT-CC---------CC---CGC---TTGCAT--------GCAGTA-GAATTGTCCAATACATTGTT----ATGGACTTTTTTATTTACAAAA-----TAGGTATATAAATC-TTT----C----ATGCATGCTGTATTCCCCATTGTCTCTCAAAATCATAAAAAATA--GC----------------ACT-----ATTTGCGATTTTTTc
gi|9 : ATA-----------------CCTAAAGTTGAAAGCGT--TAACC---------CC---AAT---TTACA---------ATAGTA-GAGTCATCCTATAATCTATT----ATGGACTGTTCTATTAATGAAA-----TAGGTGTATTGATC-TTT----CGCACATGTAGGCTTT-TTTCCTGCTGTTTGTCAAAAACATAAAAAAAATGGCAT-----------------------TTGGTGATTTCTTCTATAAAGGAACACCTGCTAGCTTTGCAAAGTCCATTGTGACA-GAA---ATTCTGCA--AACATG------ATA-----ACATCAGCT----GTTAAACTTGCTGAGACACAAAAATCTAAACACA---CA-ATA-GATTATAACTTAA
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): GTGGTGTTAAATTCCACTCTGCTTGCATTTTGCAAGTTGATTTTACAGTGGGGGAGTTCAGATCTGTAAATACTAGACTGGCCAGGCAAGTCAGTTTTTGCTCCAGATAAGCCACGTATCCA
Unaligned ( gi|22 ): GGTGTAAAATTCCATGTGGGCAAGATGAATTAACTTCGGGTTGAGTGAAGACGTGTAAATACTCAACTGGCCAGGCAAGTCTGTTTTTGTA
Unaligned ( gi|23 ): ATCAGTGCTTGATAGGCCACATATACATGTAATTTATGCATTATATTACGGATTATATTTCAATATCGTATGTATCAAAT
Unaligned ( gi|24 ): AACAAGGAGTGACAATTCATCACGGGCAAACATGATTTATTGGTCACTCATCCTACA
Unaligned ( gi|25 ): AAAATAAGATCAATGTTGAATGTTTACCGATAAAAACCAT
Alignments
lowQualScore : 1111 22 5555555555555555555555555555555555 111 111111111 222222222222222222 333333333333333333333333333 222222222222 11111 111111111 4444444444444444444444 55555555555555 1111111 11 111111 11111 1111 111 1 333333 333333333 1 1 22222 1 1 222222 1 7777777777777777777777777 1 11 9999999999999999999999999999999999999999999999999 1111
lowQualScore : 0 2 666 3 1111 3 3 8 1 4 77 55 4444444444444444444444444444444444 444 777 555555555 33 1 4 0 666666666666666666 0 33 777777777777777777777777777 111111111111 4 3 3 55 9999 1 11111 2 4 111111111 0 4 2 1 4 3 5555555555555555555555 1 88888888888888 66 1 0 8888888 1 88 1 666666 44444 0 2222 0 5 111 0 6 1 1 6 555555 3 0 0 3 000000000 3 3 0 0 1 44444 0 0 0 3 2 0 0 1 222222 7 3 0 6 7 7 0000000000000000000000000 3 0 7 3 1 66 1111111111111111111111111111111111111111111111111 1 7777 3 0 1
lowQualScore : . . ... . .... . . . . . .. .. .................................. ... ... ......... .. . . . .................. . .. ........................... ............ . . . .. .... . ..... . . ......... . . . . . . ...................... . .............. .. . . ....... . .. . ...... ..... . .... . . ... . . . . . ...... . . . . ......... . . . . . ..... . . . . . . . . ...... . . . . . . ......................... . . . . . .. ................................................. . .... . . .
lowQualScore : 1 3 444 6 4444 5 6 0 3 0 55 55 8888888888888888888888888888888888 000 888 999999999 77 1 6 7 111111111111111111 9 00 222222222222222222222222222 444444444444 4 7 7 66 4444 9 11111 6 4 777777777 1 4 7 7 9 4 5555555555555555555555 4 88888888888888 99 9 1 4444444 7 11 4 444444 33333 4 1111 7 2 777 8 7 0 0 5 222222 2 2 2 2 888888888 2 3 0 2 0 55555 0 8 2 2 5 2 8 0 222222 3 3 7 7 3 3 7777777777777777777777777 3 7 3 7 0 00 0000000000000000000000000000000000000000000000000 0 0000 2 8 0
consensus : NNNNATAAAGTTCATGATACGGATT---ATA-TTC--NAATACTG-TACGTATCAGATACGTATACAAA-TTCCCCAAT-TA--CGGAAATAAATATAG-------------------A-GAA----------GCAAGC---AAA---GATTAA------TCGTCACAATCCTTATAATGTTCTACGGCAGAACGCGCATA-----------------ACTAAAATTGAAAGCGT--T--CC---------CC---NAT---TTGCNT--------ATAGTA-GAGTCGTCCTATACGCTATT----ATGGACTGTTCTATTTATAAAA-----TAGGTGTATNAATC-TTT----C----ATGCATGCTAT-TTTCCCGCCGTTTGTCAAAAACATAATAAATATGGCGT-C-AAA-CAATT-GACT-----ATTGGCGATTTCTTCTA--------------CTAGCTTAGCAAAGTCCATTGTGACA-G-A---ATTCTGCAC-GACACG------ATA-----ACGTCAGCT----GTTAAACTTGCCGAGACGCAAAAATCCAAACACA---CAGATA-AGTTATAAATTAANCNGGACGATAT--A--TCCCATGTGGGCCCCGGAAAATAT--GC--A--ACCCAAAATTATATG-TTTT-TTTGTTTGCAGAATATTTTACNT----AAAG-TTTACTNAGGGTTGGAAAATTCAACTCGTCCAAGATTAAGTTTAATTTGTATGNAGAATAT----T-TTACATAAAGTTTACAGTACTATTATAA-AAACACGAAGACCAAATATTTTGATTAGACCATTG--A---T-TAAGTTG-TTT-AACGGTCAAAGAATCGTGGCTTGTTGAATTTAGCTCGATCATTGNAAATGACGAAAAAA---TG-------------TATGGTC-A-CTAG-----------------TCCTACAGGGCGAGTG----ATCTACAAAATAATTTTACANCCCTGC
Reference ( family-5610 ) : NNNNATAAAGTTCATGATACGGATT---ATA-TTN--AAATACTG-TACGTATCAGATACGTATACAAA-TTCCCCAAT-TA--CGGAAATAAATATAG-------------------A-GAA----------GCAAGC---AAA---GATTAA------TCGTCACAATCCTTATAATGTTCTACGGCAGAACGCGCATA-----------------ACTAAAATTGAAAGCGT--T--CC---------CC---NAT---TTGCNT--------ATAGTA-GAGTCGTCCTATACGCTATT----ATGGACTGTTCTATTTATAAAA-----TAGGTGTATNAATC-TTT----C----ATGCATGCTAT-TTTCCCGCCGTTTGTCAAAAACATAATAAATATGGCGT-C-AAA-CAATT-GACT-----ATTGGCGATTTCTTCTA--------------CTAGCTTAGCAAAGTCCATTGTGACA-G-A---ATTCTGCAC-GACACG------ATA-----ACGTCAGCT----GTTAAACTTGCCGAGACGCAAAAATCCAAACACA---CAGATA-AGTTATAAATTAANCNGGACGATAT--A--TCCCATGTGGGCCCCGGAAAATAT--GC--A--ACCCAAAATTATATG-TTTT-TTTGTTTGCAGAATATTTTACNT----AAAG-TTTACTNAGGGTTGGAAAATTCAACTCGTCCAAGATTAAGTTTAATTTGTATGNAGAATAT----T-TTACATAAAGTTTACAGTACTATTATAA-AAACACGAAGACCAAATATTTTGATTAGACCATTG--A---T-TAAGTTG-TTT-AACGGTCAAAGAATCGTGGCTTGTTGAATTTAGCTCGATCATTGNAAATGACGAAAAAA---TG-------------TATGGTC-A-CTAG-----------------TCCTACAGGGCGAGTG----ATCTACAAAATAATTTTACANCCCTGC
gi|1 : ATAAAGTTTATGATACATATTCCAATAATTT--TAATACTG-TACACATCAGATATATATACAAAATTGCCCAATGTA--TGGAAATAAATATAG-------------------A-GAA----------GCAAGC---AAA---GATTAA------TTGCCACAATCCT-ATAATGCTCTACGGCGGAACGCGTATA-----------------CCTAAAATTTAAAGTTT--T--TC---------CT---TAT---TTGGTT--------GTAGTA-GAATCATCCTATACACTATT----ATAGCATGTCCTATTTATTAAA-----TAGGTG---AAGTC-TTT----C----ATATATGCTAT-TTTTCCGCAGTTTGCCAAAAACATAATAAATATGGCGC-CCAAA-CAATTTGACT-----ATTAGTGATTTCTTCTA--------------CTAGCTTAGTAAAGTCCATAGTGACACG-A---ATTTTTCAC-AACACG------ATT-----ACCTCAGCTCTTAATTAAACTAGCTGAGATGCAAAAATCCAAACACA---CAGATA-AGTTATAAACTAATCTGGATGACATTGA--TCCCATATGGGCCCTGGAAAATAT--GC--ACAACCCAAAATTATGTGATTTT-TTTGTTTGAAGAATATTTTACTTTTAAAAAG-TTTACTCAAGGTTATAAAATTCAACTCCTCTAAGATTTAATTTAATTTGTATGAAGAATAT----T-TTACAAAAAGTTTACAGTCCTATTAT-A-AAACACAAAGA-CAAAT-TTTTG-TT-------------------------TTT-AACGGTCAAAGAACCATCACTTGTTGAATTTAGCTCGATCATTGAAACTGAC-AAAAAA---TG-------------TATGGTC-A-TTAG-----------------TCCAACAGGACGAGTGTTGAATCTACAAAATAATTTTGCACCCCTGC
gi|10 : cataATA-----------------CCTAAAGTTGAAAGCGT--TAACC---------CC---AAT---TTACA---------ATAGTA-GAGTCATCCTATAATCTATT----ATGGACTGTTCTATTAATGAAA-----TAGGTGTATTGATC-TTTCGCAC----ATGTAGGCTTT-TTTCCTGCTGTTTGTCAAAAACATAA-AAAAATGGCAT-----------------------TTGGTGATTTCTTCTATAAAGGAACACCTGCTAGCTTTGCAAAGTCCATTGTGACA-GAA---ATTCTGCA--AACATG------ATA-----ACATCAGCT----GTTAAACTTGCTGAGACACAAAAATCTAAACACA---CA-ATA-GATTATAACTTAAtatatatatctcattgaagatactgtcaacttct
gi|11 : ccatgAAAC---AAA---GATTA---------GTTACAA-----GTAATGTTCTACAGCAGAACACGCATAACTTTAAACACCCCATAACTAAAGTTGAAAGTGT--T--TCCCTCCCCACCC---CACACCCTGCCCCCCCCTCCATAGGATGA------CTATACGCTATA----ATGGACTGTTCCATTTATAAAA-----TAGGTGTATTAATC-TTT----C----ATGCATGCTAT-TTTCATGCCATTTGTCGAATACATAGTAAATACGGCGTCC-AAA-TAATT-GACT-----ATGGGCAGTTTCATCTA--------------
gi|12 : actACGGCACCATGCGCATG-----------------ACTCAAATTGAAAAACT--T--TC---------CTATAAATA--TTGTAT--------A-AATG-GACTAGGTCCATACCTTATT----ATGGACCATTCTA-TTAAAAAA-----TAGATGT---------------------------TTGT-TTGCTTGCTGTTTGTCAAAAAC---AGAAATATGGCCT-CAAAA-CAATT-GAAT-----A---GTGATTTCTTT-------------------G--TAAAAAAGTCTATTACGACACA-A---ATATTG-ACTGAAACG------ATA-----ATGaaaaaggaacacttactag
gi|13 : --TCACATGTGGACCCTGGA----------------CTCAAAATTATATG-TTTTATTTGTTTGCAGAATATTTTACAT------AGTTTTTCTAAGAGTTTGGAAATTCAACTCGTCCAAGATTAAATTTAATTTGTATAAAGAATAT----T-TTACATAAAGTTTACAGTACTATTATAATTACCATGAAGACAAAATATTTTGATAAGATCATTGTAA---TATAAGTTATTTT-AACGGTCAataatttaatgtcatct
gi|14 : CGGTCAAAGAATCGTGGC---TTGATTTTAGAGGGATCATTGAAAATGACT-AAAAA---TG-------------TA-----------------------------------AGGGCGAGTG----A
gi|14 : TTACTATAAAGGACGAGAAGAC--TT-------------TATTGTT-AACTAG-----------------CCATACAGGGCAAATG----ATCTACAAAATAACTTTCCAGCCCTGcaatttactataaaggacgagaagactttattgttaactagccatacagggcaaatgatctacaaaataactttccagccctgatcactcgagtattgatatatat
gi|15 : cggtcaaagaatcgtggcttgattttagagggatcattgaaaatgactaaaaatgtaagggcgagtgacaatTTAATGATAT--AAT---ATA-NNN--NNNNNNNAATACGTATCAGATTCATATACAAT-TTCGCCAATATA--CAGACATAAATATAG-------------------AAGAAAGAGTAATATGTAAAC---AAA---GATT----------GTCACAATTCTTATAATGCTCTACAG-------------------------------CTAAAATTGAAAGCAT--TTCCC---------CC---AAT---TTGCatcactcgagtattgatatatat
gi|16 : aatgatatcaATAAAATTCATGATACAACTT---CCA-TTC--CAAAGTTG-TACGTATCAGATATGTTTATAAA-TTCTCTAA--CA--CGGAAACAA--ATAA-------------------A-GAA----------ACAAGC---t
gi|17 : cagtgaagatatgtaaatactcgaccgactgggcgagtcagtttttgctccagataggccaaAAT---TG-------------T-TGGTC-A-CTAG-----------------TCCTACAGGGCGAGTT----ATCTTCAAAATAATTTCACACCCCTGg
gi|18 : gaaacatgacatcttgaatgaaggaaccaaattgattgaaattataaaaacagaggttagtcagacctgtggtagtccTAAAGTACATG-TATAGATT---ACA-TTT--TGATACTG-TATGTATGA-ATAACCATGTAAA-TACCCCAA--TA--TGTAGGTAAGTAAAG-------------------A-atcttgcatgtta
gi|19 : ctccggataggacaggtatccacatagtttatgcaaataaatttCTA--------------ATAGCTAAGCAAAGTCCATAGTGACA-G-A---AATTTGCAA-AGCATG------ATA-----ATGTCAGCT----ATTAAACTTGCCGAGAAGCAAAAATCCAAGTATA---CATGTACAATT-CAGACTAAACGATAC-ATAT--G--TCCCAaccatgctttaa
gi|2 : ATGAAGTTGAGGATACTGATT---ATG-ATC--AAA--CTG-TACATAGCAGATACATATACAAA-TTCCTCA-T-TAAACAAAAATAGATATAT-------------------A---A----------GCAAAC---A-----GTTTAA------TCATGA-AATCCTTGTAATGCTATACGGCAGA-CATGCTTA-----------------ACTTAAATTGAAAGTGT--TTTCC---------CA---TAT---TTGCTT--------AAACTA-GAGTC---CTATACACCACT----ATGGACTGTCCTGTTTATAAAA-----TATGTGTATGAATC-ATT----C----ATGCATGCTAT-TTTCCCGCCATTTACCAAAAACATAATAAATATGGTGT-C-AAAGCTATT-GACTTATCAATTTGCAATTTTTTGTA--------------TTAGT----CAA-------TG-AACA-G-ATATATTCTGCAT-GGCATG------ATT-----ACATCAGCT----GTTAAAATTGCTGGGTAGCAAAAACCCAAACGCA---CAGGTA-AGTTATAAATTAAACTGGACGATAA--AGCTCTCATGTGGGACCCGGAAAATAT--GCCAA--ACCCAAAA----ATG-TTTA-ATTTTTTGCAGACTATTTTACAT----AAAG-TTTACT-AGGGTTGGAAAATTCAACTCGTCCACAATTAAGTTTAAATTGTATGCAGAATATGACATATGACATAAAATTTACAGTAatagggc
gi|21 : catttctgctgcaaataggacatgtacccatgtaaattacgccagtgattaa----GTTAAACTAGCCGAGAAGCAAAAATCCAAACACACTGCAGATA-AGTTACAAATCAATCGGGACAATA-------------TGGATCCCAGAAAATATGCGC--A--ACCCAAAAT
gi|23 : TACGGATT---ATA-TTT--CAATATCG-TATGTATCAAAT
gi|3 : atcagtgcttgataggccacatatacatgtaatttatgcattatatAAAGTAAGTGATATGGATT---ATA-TTCCAAAATACTG-TATGTATTTGATAT------AAA-TTCTCCAATGTA--CAGAAATAAATATAG-------------------A-GAA----------GCAAGC---ATA---GATTAA------TTGTCGCAATCCT-ATAATGTTCTATAGTGGAACATGCATA-----------------ACTAAAATTGAAAGTGTGAC--CC---------CC---CTT---TTGCTT--------ATTGTG-GAGTCGTCCTAAATGCTATTTATAATGGACTGTCCTATTTATAAAT-----TAGGTGTATTAATC-TTT----C----ATACATGCTAT-TTTCC-ACTGTTTGTCAAAATCATATTAAATATGGTGT-CCAAA-CAATT-GACT-----ACTGGTGATTTTTTCTA--------------CAAGTATAGCAAAGTCCATTGTGATA-A-A---A-TCTGCAT-GACATGGTTTAAATAAGATTATGTCAGCT----GT
gi|4 : tgatgttatttaccgcatgggagtgtaaaattccactcgtatttgtgagttgatttcactgggttgagtaaagatttgcaaatactcaaccagctgggtgagtcagtttttgctccagacaggccacgtatccacataatttacccaaagAAGATCATGATACGAATT---ATA-TTA--AAAAACTG-TACATATCAGATACATATATAGG-TTCCCCAA--TA--CGGAAATAAATATAA-------------------A-G------------GCAAGCGTTAAA---TATAAA------CCA--AGAATCCTTATAATGTTCCACGACAAAACGAGTATA-----------------c
gi|5 : ctttttatctttatattttggtacatagtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatattttcaatatagcgaatcccaatttaacgttttaattcgatgttcatatcagggtgttaaattctactaaattttagtggggtgagtgaagatctgtaaatacccgactggctgggcgggtccgtttttacaccagatggccacgtatccgcataatttacacaaatAAGATCATGATACGGATT---ATA-TTA--AAAAACTG-TACATATCAGATACATATATAGG-TTCCCCAA--TA--CGAAAATAAATATAA-------------------A-G------------GCAAGCGTAAAA---TATAAA------CCA--AGAATCCTTATAATGTTCCACGACAAAACG
gi|6 : tttttatctttatattttggtacatagtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatattttcaatatagcgaatcccaatttaacgttttaattcgatgttcatatcagggtgttaaattctactaaattttagtggggtgagtgaagatctgtaaatacccgactggctgggcttgtccgtttttacaccagatggccacgtatccgcataatttacacaaatATAAAGTTCATGATACGGTTT---ATA-TTC--CAATACTG-TACCTA------------GCAAA-TTCCCCAA--TA--TGGAAATGAATATAGC------------------A-GCA----------GTGGAA---AAATATAATTAAACTTTGTTGTCGCAATCCTTACAATGTTCTGCAGAACAACGCACATA-----------------ACT--TATAGATA-------------------------------TTGTCT--------A-------AATTGTTCTGTAAACTATT----ACGGGCTGTTCTA-----AAAAACATGTAGGTGAATAAATTATTT----C----ATGCATGATAT-TTTCCCACCACTTATCAAAATCATAATagta
gi|7 : gggtcgtaaaattccactcgcccactcacattcgatttcacaggggcgagtggagatttataaatactctgatgaccaggtgagtcagtttttgctctagataggccacgtattcacgtaatttacacaaTT-TTTATTTGCAGTATATTTTACTT----AAAA-TTTAATGAGGATTGGAA--------------AGGATTAAGGTTATTTTATATGCAGAATAT----T-TTACATAAAGTTTACAGTACTGTAATAA-AAACACAAAGACCAAATATTTGCATTAGACCATTG--ACATT-TAAATTG-TTTAAACAGTCAAAGAATCATGGCTTGTTGAATTAAGCTTGACCATTGCAAATGGCAAAAAAAAGGTGAGTGACAATTTACTATGGGCAA-CTAGATTTTATTGGTCACTTGTCCTACAGTGCGAGTG----GTCTAC-AAATAATATTACAGCCCTGC
gi|8 : GATT---ATA-CTC--CATTACTG-TTTGTATCAGATACGTAC-CAAC-TTTCTTAAT--A--TGGAAATAAATATAGTTTTTGTCTCAACAATCGTA-AAAT---------GTAAA----AAA---GATTTG------TTGTCACAATCCTTAAAATGGTCTATCACAGAACACGCTTA-----------------ACTAATATTGAAAGCTT--TT-CC---------CC---CGC---TTGCAT--------GCAGTA-GAATTGTCCAATACATTGTT----ATGGACTTTTTTATTTACAAAA-----TAGGTATATAAATC-TTT----C----ATGCATGCTGTATTCCCCATTGTCTCTCAAAATCATAAAAAATA--GC----------------ACT-----ATTTGCGATTTTTTc
gi|9 : ATA-----------------CCTAAAGTTGAAAGCGT--TAACC---------CC---AAT---TTACA---------ATAGTA-GAGTCATCCTATAATCTATT----ATGGACTGTTCTATTAATGAAA-----TAGGTGTATTGATC-TTT----CGCACATGTAGGCTTT-TTTCCTGCTGTTTGTCAAAAACATAAAAAAAATGGCAT-----------------------TTGGTGATTTCTTCTATAAAGGAACACCTGCTAGCTTTGCAAAGTCCATTGTGACA-GAA---ATTCTGCA--AACATG------ATA-----ACATCAGCT----GTTAAACTTGCTGAGACACAAAAATCTAAACACA---CA-ATA-GATTATAACTTAA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): GTGGTGTTAAATTCCACTCTGCTTGCATTTTGCAAGTTGATTTTACAGTGGGGGAGTTCAGATCTGTAAATACTAGACTGGCCAGGCAAGTCAGTTTTTGCTCCAGATAAGCCACGTATCCA
Unaligned ( gi|22 ): GGTGTAAAATTCCATGTGGGCAAGATGAATTAACTTCGGGTTGAGTGAAGACGTGTAAATACTCAACTGGCCAGGCAAGTCTGTTTTTGTA
Unaligned ( gi|24 ): AACAAGGAGTGACAATTCATCACGGGCAAACATGATTTATTGGTCACTCATCCTACA
Unaligned ( gi|25 ): AAAATAAGATCAATGTTGAATGTTTACCGATAAAAACCAT
Alignments
lowQualScore : 22 5555555555555555555555555555555555 111 111111111 222222222222222222 333333333333333333333333333 222222222222 11111 111111111 4444444444444444444444 55555555555555 1111111 11 111111 11111 1111 111 1 333333 333333333 1 1 22222 1 1 222222 1 7777777777777777777777777 1 11 9999999999999999999999999999999999999999999999999 1111
lowQualScore : 0 2 666 3 1 888 3 8 1 4 77 55 4444444444444444444444444444444444 444 777 555555555 33 1 4 0 666666666666666666 0 33 777777777777777777777777777 111111111111 4 3 3 55 9999 1 11111 2 4 111111111 0 4 2 1 4 3 5555555555555555555555 1 88888888888888 66 1 0 8888888 1 88 1 666666 44444 0 2222 0 5 111 0 6 1 1 6 555555 3 0 0 3 000000000 3 3 0 0 1 44444 0 0 0 3 2 0 0 1 222222 7 3 0 6 7 7 0000000000000000000000000 3 0 7 3 1 66 1111111111111111111111111111111111111111111111111 1 7777 3 0 1
lowQualScore : . . ... . . ... . . . . .. .. .................................. ... ... ......... .. . . . .................. . .. ........................... ............ . . . .. .... . ..... . . ......... . . . . . . ...................... . .............. .. . . ....... . .. . ...... ..... . .... . . ... . . . . . ...... . . . . ......... . . . . . ..... . . . . . . . . ...... . . . . . . ......................... . . . . . .. ................................................. . .... . . .
lowQualScore : 1 3 444 6 0 555 6 0 3 0 55 55 8888888888888888888888888888888888 000 888 999999999 77 1 6 7 111111111111111111 9 00 222222222222222222222222222 444444444444 4 7 7 66 4444 9 11111 6 4 777777777 1 4 7 7 9 4 5555555555555555555555 4 88888888888888 99 9 1 4444444 7 11 4 444444 33333 4 1111 7 2 777 8 7 0 0 5 222222 2 2 2 2 888888888 2 3 0 2 0 55555 0 8 2 2 5 2 8 0 222222 3 3 7 7 3 3 7777777777777777777777777 3 7 3 7 0 00 0000000000000000000000000000000000000000000000000 0 0000 2 8 0
consensus : NNNNATAAAGTTCATGATACGGATT---ATA-TTCCAA--TACTG-TACGTATCAGATACGTATACAAA-TTCCCCAAT-TA--CGGAAATAAATATAG-------------------A-GAA----------GCAAGC---AAA---GATTAA------TCGTCACAATCCTTATAATGTTCTACGGCAGAACGCGCATA-----------------ACTAAAATTGAAAGCGT--T--CC---------CC---NAT---TTGCNT--------ATAGTA-GAGTCGTCCTATACGCTATT----ATGGACTGTTCTATTTATAAAA-----TAGGTGTATNAATC-TTT----C----ATGCATGCTAT-TTTCCCGCCGTTTGTCAAAAACATAATAAATATGGCGT-C-AAA-CAATT-GACT-----ATTGGCGATTTCTTCTA--------------CTAGCTTAGCAAAGTCCATTGTGACA-G-A---ATTCTGCAC-GACACG------ATA-----ACGTCAGCT----GTTAAACTTGCCGAGACGCAAAAATCCAAACACA---CAGATA-AGTTATAAATTAANCNGGACGATAT--A--TCCCATGTGGGCCCCGGAAAATAT--GC--A--ACCCAAAATTATATG-TTTT-TTTGTTTGCAGAATATTTTACNT----AAAG-TTTACTNAGGGTTGGAAAATTCAACTCGTCCAAGATTAAGTTTAATTTGTATGNAGAATAT----T-TTACATAAAGTTTACAGTACTATTATAA-AAACACGAAGACCAAATATTTTGATTAGACCATTG--A---T-TAAGTTG-TTT-AACGGTCAAAGAATCGTGGCTTGTTGAATTTAGCTCGATCATTGNAAATGACGAAAAAA---TG-------------TATGGTC-A-CTAG-----------------TCCTACAGGGCGAGTG----ATCTACAAAATAATTTTACANCCCTGC
Reference ( family-5610 ) : NNNNATAAAGTTCATGATACGGATT---ATA-TTCNAA--TACTG-TACGTATCAGATACGTATACAAA-TTCCCCAAT-TA--CGGAAATAAATATAG-------------------A-GAA----------GCAAGC---AAA---GATTAA------TCGTCACAATCCTTATAATGTTCTACGGCAGAACGCGCATA-----------------ACTAAAATTGAAAGCGT--T--CC---------CC---NAT---TTGCNT--------ATAGTA-GAGTCGTCCTATACGCTATT----ATGGACTGTTCTATTTATAAAA-----TAGGTGTATNAATC-TTT----C----ATGCATGCTAT-TTTCCCGCCGTTTGTCAAAAACATAATAAATATGGCGT-C-AAA-CAATT-GACT-----ATTGGCGATTTCTTCTA--------------CTAGCTTAGCAAAGTCCATTGTGACA-G-A---ATTCTGCAC-GACACG------ATA-----ACGTCAGCT----GTTAAACTTGCCGAGACGCAAAAATCCAAACACA---CAGATA-AGTTATAAATTAANCNGGACGATAT--A--TCCCATGTGGGCCCCGGAAAATAT--GC--A--ACCCAAAATTATATG-TTTT-TTTGTTTGCAGAATATTTTACNT----AAAG-TTTACTNAGGGTTGGAAAATTCAACTCGTCCAAGATTAAGTTTAATTTGTATGNAGAATAT----T-TTACATAAAGTTTACAGTACTATTATAA-AAACACGAAGACCAAATATTTTGATTAGACCATTG--A---T-TAAGTTG-TTT-AACGGTCAAAGAATCGTGGCTTGTTGAATTTAGCTCGATCATTGNAAATGACGAAAAAA---TG-------------TATGGTC-A-CTAG-----------------TCCTACAGGGCGAGTG----ATCTACAAAATAATTTTACANCCCTGC
gi|1 : ATAAAGTTTATGATACATATTCCAATAATTTTAA--TACTG-TACACATCAGATATATATACAAAATTGCCCAATGTA--TGGAAATAAATATAG-------------------A-GAA----------GCAAGC---AAA---GATTAA------TTGCCACAATCCT-ATAATGCTCTACGGCGGAACGCGTATA-----------------CCTAAAATTTAAAGTTT--T--TC---------CT---TAT---TTGGTT--------GTAGTA-GAATCATCCTATACACTATT----ATAGCATGTCCTATTTATTAAA-----TAGGTG---AAGTC-TTT----C----ATATATGCTAT-TTTTCCGCAGTTTGCCAAAAACATAATAAATATGGCGC-CCAAA-CAATTTGACT-----ATTAGTGATTTCTTCTA--------------CTAGCTTAGTAAAGTCCATAGTGACACG-A---ATTTTTCAC-AACACG------ATT-----ACCTCAGCTCTTAATTAAACTAGCTGAGATGCAAAAATCCAAACACA---CAGATA-AGTTATAAACTAATCTGGATGACATTGA--TCCCATATGGGCCCTGGAAAATAT--GC--ACAACCCAAAATTATGTGATTTT-TTTGTTTGAAGAATATTTTACTTTTAAAAAG-TTTACTCAAGGTTATAAAATTCAACTCCTCTAAGATTTAATTTAATTTGTATGAAGAATAT----T-TTACAAAAAGTTTACAGTCCTATTAT-A-AAACACAAAGA-CAAAT-TTTTG-TT-------------------------TTT-AACGGTCAAAGAACCATCACTTGTTGAATTTAGCTCGATCATTGAAACTGAC-AAAAAA---TG-------------TATGGTC-A-TTAG-----------------TCCAACAGGACGAGTGTTGAATCTACAAAATAATTTTGCACCCCTGC
gi|10 : cataATA-----------------CCTAAAGTTGAAAGCGT--TAACC---------CC---AAT---TTACA---------ATAGTA-GAGTCATCCTATAATCTATT----ATGGACTGTTCTATTAATGAAA-----TAGGTGTATTGATC-TTTCGCAC----ATGTAGGCTTT-TTTCCTGCTGTTTGTCAAAAACATAA-AAAAATGGCAT-----------------------TTGGTGATTTCTTCTATAAAGGAACACCTGCTAGCTTTGCAAAGTCCATTGTGACA-GAA---ATTCTGCA--AACATG------ATA-----ACATCAGCT----GTTAAACTTGCTGAGACACAAAAATCTAAACACA---CA-ATA-GATTATAACTTAAtatatatatctcattgaagatactgtcaacttct
gi|11 : ccatgAAAC---AAA---GATTA---------GTTACAA-----GTAATGTTCTACAGCAGAACACGCATAACTTTAAACACCCCATAACTAAAGTTGAAAGTGT--T--TCCCTCCCCACCC---CACACCCTGCCCCCCCCTCCATAGGATGA------CTATACGCTATA----ATGGACTGTTCCATTTATAAAA-----TAGGTGTATTAATC-TTT----C----ATGCATGCTAT-TTTCATGCCATTTGTCGAATACATAGTAAATACGGCGTCC-AAA-TAATT-GACT-----ATGGGCAGTTTCATCTA--------------
gi|12 : actACGGCACCATGCGCATG-----------------ACTCAAATTGAAAAACT--T--TC---------CTATAAATA--TTGTAT--------A-AATG-GACTAGGTCCATACCTTATT----ATGGACCATTCTA-TTAAAAAA-----TAGATGT---------------------------TTGT-TTGCTTGCTGTTTGTCAAAAAC---AGAAATATGGCCT-CAAAA-CAATT-GAAT-----A---GTGATTTCTTT-------------------G--TAAAAAAGTCTATTACGACACA-A---ATATTG-ACTGAAACG------ATA-----ATGaaaaaggaacacttactag
gi|13 : --TCACATGTGGACCCTGGA----------------CTCAAAATTATATG-TTTTATTTGTTTGCAGAATATTTTACAT------AGTTTTTCTAAGAGTTTGGAAATTCAACTCGTCCAAGATTAAATTTAATTTGTATAAAGAATAT----T-TTACATAAAGTTTACAGTACTATTATAATTACCATGAAGACAAAATATTTTGATAAGATCATTGTAA---TATAAGTTATTTT-AACGGTCAataatttaatgtcatct
gi|14 : CGGTCAAAGAATCGTGGC---TTGATTTTAGAGGGATCATTGAAAATGACT-AAAAA---TG-------------TA-----------------------------------AGGGCGAGTG----A
gi|14 : TTACTATAAAGGACGAGAAGAC--TT-------------TATTGTT-AACTAG-----------------CCATACAGGGCAAATG----ATCTACAAAATAACTTTCCAGCCCTGcaatttactataaaggacgagaagactttattgttaactagccatacagggcaaatgatctacaaaataactttccagccctgatcactcgagtattgatatatat
gi|15 : cggtcaaagaatcgtggcttgattttagagggatcattgaaaatgactaaaaatgtaagggcgagtgacaatTTAATGATAT--AAT---ATA-NNNNNN--NNNNAATACGTATCAGATTCATATACAAT-TTCGCCAATATA--CAGACATAAATATAG-------------------AAGAAAGAGTAATATGTAAAC---AAA---GATT----------GTCACAATTCTTATAATGCTCTACAG-------------------------------CTAAAATTGAAAGCAT--TTCCC---------CC---AAT---TTGCatcactcgagtattgatatatat
gi|16 : aatgatatcaATAAAATTCATGATACAACTT---CCA-TTCCAA--AGTTG-TACGTATCAGATATGTTTATAAA-TTCTCTAA--CA--CGGAAACAA--ATAA-------------------A-GAA----------ACAAGC---t
gi|17 : cagtgaagatatgtaaatactcgaccgactgggcgagtcagtttttgctccagataggccaaAAT---TG-------------T-TGGTC-A-CTAG-----------------TCCTACAGGGCGAGTT----ATCTTCAAAATAATTTCACACCCCTGg
gi|18 : gaaacatgacatcttgaatgaaggaaccaaattgattgaaattataaaaacagaggttagtcagacctgtggtagtccTAAAGTACATG-TATAGATT---ACA-TTTTGA--TACTG-TATGTATGA-ATAACCATGTAAA-TACCCCAA--TA--TGTAGGTAAGTAAAG-------------------A-atcttgcatgtta
gi|19 : ctccggataggacaggtatccacatagtttatgcaaataaatttCTA--------------ATAGCTAAGCAAAGTCCATAGTGACA-G-A---AATTTGCAA-AGCATG------ATA-----ATGTCAGCT----ATTAAACTTGCCGAGAAGCAAAAATCCAAGTATA---CATGTACAATT-CAGACTAAACGATAC-ATAT--G--TCCCAaccatgctttaa
gi|2 : ATGAAGTTGAGGATACTGATT---ATG-ATCAAA----CTG-TACATAGCAGATACATATACAAA-TTCCTCA-T-TAAACAAAAATAGATATAT-------------------A---A----------GCAAAC---A-----GTTTAA------TCATGA-AATCCTTGTAATGCTATACGGCAGA-CATGCTTA-----------------ACTTAAATTGAAAGTGT--TTTCC---------CA---TAT---TTGCTT--------AAACTA-GAGTC---CTATACACCACT----ATGGACTGTCCTGTTTATAAAA-----TATGTGTATGAATC-ATT----C----ATGCATGCTAT-TTTCCCGCCATTTACCAAAAACATAATAAATATGGTGT-C-AAAGCTATT-GACTTATCAATTTGCAATTTTTTGTA--------------TTAGT----CAA-------TG-AACA-G-ATATATTCTGCAT-GGCATG------ATT-----ACATCAGCT----GTTAAAATTGCTGGGTAGCAAAAACCCAAACGCA---CAGGTA-AGTTATAAATTAAACTGGACGATAA--AGCTCTCATGTGGGACCCGGAAAATAT--GCCAA--ACCCAAAA----ATG-TTTA-ATTTTTTGCAGACTATTTTACAT----AAAG-TTTACT-AGGGTTGGAAAATTCAACTCGTCCACAATTAAGTTTAAATTGTATGCAGAATATGACATATGACATAAAATTTACAGTAatagggc
gi|21 : catttctgctgcaaataggacatgtacccatgtaaattacgccagtgattaa----GTTAAACTAGCCGAGAAGCAAAAATCCAAACACACTGCAGATA-AGTTACAAATCAATCGGGACAATA-------------TGGATCCCAGAAAATATGCGC--A--ACCCAAAAT
gi|23 : TACGGATT---ATA-TTTCAA--TATCG-TATGTATCAAAT
gi|3 : atcagtgcttgataggccacatatacatgtaatttatgcattatatAAAGTAAGTGATATGGATT---ATA-TTCCAAAATACTG-TATGTATTTGATAT------AAA-TTCTCCAATGTA--CAGAAATAAATATAG-------------------A-GAA----------GCAAGC---ATA---GATTAA------TTGTCGCAATCCT-ATAATGTTCTATAGTGGAACATGCATA-----------------ACTAAAATTGAAAGTGTGAC--CC---------CC---CTT---TTGCTT--------ATTGTG-GAGTCGTCCTAAATGCTATTTATAATGGACTGTCCTATTTATAAAT-----TAGGTGTATTAATC-TTT----C----ATACATGCTAT-TTTCC-ACTGTTTGTCAAAATCATATTAAATATGGTGT-CCAAA-CAATT-GACT-----ACTGGTGATTTTTTCTA--------------CAAGTATAGCAAAGTCCATTGTGATA-A-A---A-TCTGCAT-GACATGGTTTAAATAAGATTATGTCAGCT----GT
gi|4 : tgatgttatttaccgcatgggagtgtaaaattccactcgtatttgtgagttgatttcactgggttgagtaaagatttgcaaatactcaaccagctgggtgagtcagtttttgctccagacaggccacgtatccacataatttacccaaagAAGATCATGATACGAATT---ATA-TTAAAA--AACTG-TACATATCAGATACATATATAGG-TTCCCCAA--TA--CGGAAATAAATATAA-------------------A-G------------GCAAGCGTTAAA---TATAAA------CCA--AGAATCCTTATAATGTTCCACGACAAAACGAGTATA-----------------c
gi|5 : ctttttatctttatattttggtacatagtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatattttcaatatagcgaatcccaatttaacgttttaattcgatgttcatatcagggtgttaaattctactaaattttagtggggtgagtgaagatctgtaaatacccgactggctgggcgggtccgtttttacaccagatggccacgtatccgcataatttacacaaatAAGATCATGATACGGATT---ATA-TTAAAA--AACTG-TACATATCAGATACATATATAGG-TTCCCCAA--TA--CGAAAATAAATATAA-------------------A-G------------GCAAGCGTAAAA---TATAAA------CCA--AGAATCCTTATAATGTTCCACGACAAAACG
gi|6 : tttttatctttatattttggtacatagtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatattttcaatatagcgaatcccaatttaacgttttaattcgatgttcatatcagggtgttaaattctactaaattttagtggggtgagtgaagatctgtaaatacccgactggctgggcttgtccgtttttacaccagatggccacgtatccgcataatttacacaaatATAAAGTTCATGATACGGTTT---ATA-TTCCAA--TACTG-TACCTA------------GCAAA-TTCCCCAA--TA--TGGAAATGAATATAGC------------------A-GCA----------GTGGAA---AAATATAATTAAACTTTGTTGTCGCAATCCTTACAATGTTCTGCAGAACAACGCACATA-----------------ACT--TATAGATA-------------------------------TTGTCT--------A-------AATTGTTCTGTAAACTATT----ACGGGCTGTTCTA-----AAAAACATGTAGGTGAATAAATTATTT----C----ATGCATGATAT-TTTCCCACCACTTATCAAAATCATAATagta
gi|7 : gggtcgtaaaattccactcgcccactcacattcgatttcacaggggcgagtggagatttataaatactctgatgaccaggtgagtcagtttttgctctagataggccacgtattcacgtaatttacacaaTT-TTTATTTGCAGTATATTTTACTT----AAAA-TTTAATGAGGATTGGAA--------------AGGATTAAGGTTATTTTATATGCAGAATAT----T-TTACATAAAGTTTACAGTACTGTAATAA-AAACACAAAGACCAAATATTTGCATTAGACCATTG--ACATT-TAAATTG-TTTAAACAGTCAAAGAATCATGGCTTGTTGAATTAAGCTTGACCATTGCAAATGGCAAAAAAAAGGTGAGTGACAATTTACTATGGGCAA-CTAGATTTTATTGGTCACTTGTCCTACAGTGCGAGTG----GTCTAC-AAATAATATTACAGCCCTGC
gi|8 : GATT---ATA-CTCCAT--TACTG-TTTGTATCAGATACGTAC-CAAC-TTTCTTAAT--A--TGGAAATAAATATAGTTTTTGTCTCAACAATCGTA-AAAT---------GTAAA----AAA---GATTTG------TTGTCACAATCCTTAAAATGGTCTATCACAGAACACGCTTA-----------------ACTAATATTGAAAGCTT--TT-CC---------CC---CGC---TTGCAT--------GCAGTA-GAATTGTCCAATACATTGTT----ATGGACTTTTTTATTTACAAAA-----TAGGTATATAAATC-TTT----C----ATGCATGCTGTATTCCCCATTGTCTCTCAAAATCATAAAAAATA--GC----------------ACT-----ATTTGCGATTTTTTc
gi|9 : ATA-----------------CCTAAAGTTGAAAGCGT--TAACC---------CC---AAT---TTACA---------ATAGTA-GAGTCATCCTATAATCTATT----ATGGACTGTTCTATTAATGAAA-----TAGGTGTATTGATC-TTT----CGCACATGTAGGCTTT-TTTCCTGCTGTTTGTCAAAAACATAAAAAAAATGGCAT-----------------------TTGGTGATTTCTTCTATAAAGGAACACCTGCTAGCTTTGCAAAGTCCATTGTGACA-GAA---ATTCTGCA--AACATG------ATA-----ACATCAGCT----GTTAAACTTGCTGAGACACAAAAATCTAAACACA---CA-ATA-GATTATAACTTAA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): GTGGTGTTAAATTCCACTCTGCTTGCATTTTGCAAGTTGATTTTACAGTGGGGGAGTTCAGATCTGTAAATACTAGACTGGCCAGGCAAGTCAGTTTTTGCTCCAGATAAGCCACGTATCCA
Unaligned ( gi|22 ): GGTGTAAAATTCCATGTGGGCAAGATGAATTAACTTCGGGTTGAGTGAAGACGTGTAAATACTCAACTGGCCAGGCAAGTCTGTTTTTGTA
Unaligned ( gi|24 ): AACAAGGAGTGACAATTCATCACGGGCAAACATGATTTATTGGTCACTCATCCTACA
Unaligned ( gi|25 ): AAAATAAGATCAATGTTGAATGTTTACCGATAAAAACCAT
Alignments
lowQualScore : 22 5555555555555555555555555555555555 111 111111111 222222222222222222 333333333333333333333333333 222222222222 11111 111111111 4444444444444444444444444 55555555555555 1111111 11 111111 11111 1111 111 1 333333 33333333 1 1 22222 1 1 222222 1 7777777777777777777777777 1 11 9999999999999999999999999999999999999999999999999 1111
lowQualScore : 0 2 666 3 3 2 888 3 8 1 4 77 55 4444444444444444444444444444444444 444 777 555555555 33 1 4 0 666666666666666666 0 33 777777777777777777777777777 111111111111 4 3 3 55 9999 1 11111 2 4 111111111 0 4 2 1 4 4444444444444444444444444 1 88888888888888 66 1 0 8888888 1 88 1 666666 44444 0 2222 0 5 111 0 6 1 1 6 555555 3 0 0 3 33333333 3 3 0 0 1 44444 0 0 0 3 2 0 0 1 222222 7 3 0 6 7 7 0000000000000000000000000 3 0 7 3 1 66 1111111111111111111111111111111111111111111111111 1 7777 3 0 1
lowQualScore : . . ... . . . ... . . . . .. .. .................................. ... ... ......... .. . . . .................. . .. ........................... ............ . . . .. .... . ..... . . ......... . . . . . ......................... . .............. .. . . ....... . .. . ...... ..... . .... . . ... . . . . . ...... . . . . ........ . . . . . ..... . . . . . . . . ...... . . . . . . ......................... . . . . . .. ................................................. . .... . . .
lowQualScore : 1 3 444 6 6 2 555 6 0 3 0 55 55 8888888888888888888888888888888888 000 888 999999999 77 1 6 7 111111111111111111 9 00 222222222222222222222222222 444444444444 4 7 7 66 4444 9 11111 6 4 777777777 1 4 7 7 9 8888888888888888888888888 4 88888888888888 99 9 1 4444444 7 11 4 444444 33333 4 1111 7 2 777 8 7 0 0 5 222222 2 2 2 2 88888888 2 3 0 2 0 55555 0 8 2 2 5 2 8 0 222222 3 3 7 7 3 3 7777777777777777777777777 3 7 3 7 0 00 0000000000000000000000000000000000000000000000000 0 0000 2 8 0
consensus : NNNNATAAAGTTCATGATACGGATT---AT-A-TTCCAA--TACTG-TACGTATCAGATACGTATACAAA-TTCCCCAAT-TA--CGGAAATAAATATAG-------------------A-GAA----------GCAAGC---AAA---GATTAA------TCGTCACAATCCTTATAATGTTCTACGGCAGAACGCGCATA-----------------ACTAAAATTGAAAGCGT--T--CC---------CC---NAT---TTGCNT--------ATAGTA-GAGTCGTCCTATACGCTATT----ATGGACTGTTCTATTTATAAAA-----TAGGTGTATNAATC-TTT----C----ATGCATGCTAT-TTTCCCGCCGTTTGTCAAAAACATAATAAATATGGCG-T-C-AAA-CAA-TTGACT-----ATTGGCGATTTCTTCTA--------------CTAGCTTAGCAAAGTCCATTGTGACA-G-A---ATTCTGCAC-GACACG------ATA-----ACGTCAGCT----GTTAAACTTGCCGAGACGCAAAAATCCAAACACA---CAGATA-AGTTATAAATTAANCNGGACGATAT--A--TCCCATGTGGGCCCCGGAAAATAT--G--C--AACCCAAAATTATATG-TTTT-TTTGTTTGCAGAATATTTTACNT----AAAG-TTTACTNAGGGTTGGAAAATTCAACTCGTCCAAGATTAAGTTTAATTTGTATGNAGAATAT----T-TTACATAAAGTTTACAGTACTATTATAA-AAACACGAAGACCAAATATTTTGATTAGACCATTG--A---T-TAAGTTG-TTT-AACGGTCAAAGAATCGTGGCTTGTTGAATTTAGCTCGATCATTGNAAATGACGAAAAAA---TG-------------TATGGTC-A-CTAG-----------------TCCTACAGGGCGAGTG----ATCTACAAAATAATTTTACANCCCTGC
Reference ( family-5610 ) : NNNNATAAAGTTCATGATACGGATT---AT-A-TTCCAA--TACTG-TACGTATCAGATACGTATACAAA-TTCCCCAAT-TA--CGGAAATAAATATAG-------------------A-GAA----------GCAAGC---AAA---GATTAA------TCGTCACAATCCTTATAATGTTCTACGGCAGAACGCGCATA-----------------ACTAAAATTGAAAGCGT--T--CC---------CC---NAT---TTGCNT--------ATAGTA-GAGTCGTCCTATACGCTATT----ATGGACTGTTCTATTTATAAAA-----TAGGTGTATNAATC-TTT----C----ATGCATGCTAT-TTTCCCGCCGTTTGTCAAAAACATAATAAATATGGCG-T-C-AAA-CAA-TTGACT-----ATTGGCGATTTCTTCTA--------------CTAGCTTAGCAAAGTCCATTGTGACA-G-A---ATTCTGCAC-GACACG------ATA-----ACGTCAGCT----GTTAAACTTGCCGAGACGCAAAAATCCAAACACA---CAGATA-AGTTATAAATTAANCNGGACGATAT--A--TCCCATGTGGGCCCCGGAAAATAT--G--C--AACCCAAAATTATATG-TTTT-TTTGTTTGCAGAATATTTTACNT----AAAG-TTTACTNAGGGTTGGAAAATTCAACTCGTCCAAGATTAAGTTTAATTTGTATGNAGAATAT----T-TTACATAAAGTTTACAGTACTATTATAA-AAACACGAAGACCAAATATTTTGATTAGACCATTG--A---T-TAAGTTG-TTT-AACGGTCAAAGAATCGTGGCTTGTTGAATTTAGCTCGATCATTGNAAATGACGAAAAAA---TG-------------TATGGTC-A-CTAG-----------------TCCTACAGGGCGAGTG----ATCTACAAAATAATTTTACANCCCTGC
gi|1 : ATAAAGTTTATGATACATATTCCAAT-AATTTTAA--TACTG-TACACATCAGATATATATACAAAATTGCCCAATGTA--TGGAAATAAATATAG-------------------A-GAA----------GCAAGC---AAA---GATTAA------TTGCCACAATCCT-ATAATGCTCTACGGCGGAACGCGTATA-----------------CCTAAAATTTAAAGTTT--T--TC---------CT---TAT---TTGGTT--------GTAGTA-GAATCATCCTATACACTATT----ATAGCATGTCCTATTTATTAAA-----TAGGTG---AAGTC-TTT----C----ATATATGCTAT-TTTTCCGCAGTTTGCCAAAAACATAATAAATATGGCGCC-C-AAA-CAATTTGACT-----ATTAGTGATTTCTTCTA--------------CTAGCTTAGTAAAGTCCATAGTGACACG-A---ATTTTTCAC-AACACG------ATT-----ACCTCAGCTCTTAATTAAACTAGCTGAGATGCAAAAATCCAAACACA---CAGATA-AGTTATAAACTAATCTGGATGACATTGA--TCCCATATGGGCCCTGGAAAATAT--GCAC--AACCCAAAATTATGTGATTTT-TTTGTTTGAAGAATATTTTACTTTTAAAAAG-TTTACTCAAGGTTATAAAATTCAACTCCTCTAAGATTTAATTTAATTTGTATGAAGAATAT----T-TTACAAAAAGTTTACAGTCCTATTAT-A-AAACACAAAGA-CAAAT-TTTTG-TT-------------------------TTT-AACGGTCAAAGAACCATCACTTGTTGAATTTAGCTCGATCATTGAAACTGAC-AAAAAA---TG-------------TATGGTC-A-TTAG-----------------TCCAACAGGACGAGTGTTGAATCTACAAAATAATTTTGCACCCCTGC
gi|10 : cataATA-----------------CCTAAAGTTGAAAGCGT--TAACC---------CC---AAT---TTACA---------ATAGTA-GAGTCATCCTATAATCTATT----ATGGACTGTTCTATTAATGAAA-----TAGGTGTATTGATC-TTTCGCAC----ATGTAGGCTTT-TTTCCTGCTGTTTGTCAAAAACATAA-AAAAATGGCA-T-----------------------TTGGTGATTTCTTCTATAAAGGAACACCTGCTAGCTTTGCAAAGTCCATTGTGACA-GAA---ATTCTGCA--AACATG------ATA-----ACATCAGCT----GTTAAACTTGCTGAGACACAAAAATCTAAACACA---CA-ATA-GATTATAACTTAAtatatatatctcattgaagatactgtcaacttct
gi|11 : ccatgAAAC---AAA---GATTA---------GTTACAA-----GTAATGTTCTACAGCAGAACACGCATAACTTTAAACACCCCATAACTAAAGTTGAAAGTGT--T--TCCCTCCCCACCC---CACACCCTGCCCCCCCCTCCATAGGATGA------CTATACGCTATA----ATGGACTGTTCCATTTATAAAA-----TAGGTGTATTAATC-TTT----C----ATGCATGCTAT-TTTCATGCCATTTGTCGAATACATAGTAAATACGGCG-TCC-AAA-TAA-TTGACT-----ATGGGCAGTTTCATCTA--------------
gi|12 : actACGGCACCATGCGCATG-----------------ACTCAAATTGAAAAACT--T--TC---------CTATAAATA--TTGTAT--------A-AATG-GACTAGGTCCATACCTTATT----ATGGACCATTCTA-TTAAAAAA-----TAGATGT---------------------------TTGT-TTGCTTGCTGTTTGTCAAAAAC---AGAAATATGGCC-T-CAAAA-CAA-TTGAAT-----A---GTGATTTCTTT-------------------G--TAAAAAAGTCTATTACGACACA-A---ATATTG-ACTGAAACG------ATA-----ATGaaaaaggaacacttactag
gi|13 : --TCACATGTGGACCCTGGA----------------CTCAAAATTATATG-TTTTATTTGTTTGCAGAATATTTTACAT------AGTTTTTCTAAGAGTTTGGAAATTCAACTCGTCCAAGATTAAATTTAATTTGTATAAAGAATAT----T-TTACATAAAGTTTACAGTACTATTATAATTACCATGAAGACAAAATATTTTGATAAGATCATTGTAA---TATAAGTTATTTT-AACGGTCAataatttaatgtcatct
gi|14 : CGGTCAAAGAATCGTGGC---TTGATTTTAGAGGGATCATTGAAAATGACT-AAAAA---TG-------------TA-----------------------------------AGGGCGAGTG----A
gi|14 : TTACTATAAAGGACGAGAAGAC--TT-------------TATTGTT-AACTAG-----------------CCATACAGGGCAAATG----ATCTACAAAATAACTTTCCAGCCCTGcaatttactataaaggacgagaagactttattgttaactagccatacagggcaaatgatctacaaaataactttccagccctgatcactcgagtattgatatatat
gi|15 : cggtcaaagaatcgtggcttgattttagagggatcattgaaaatgactaaaaatgtaagggcgagtgacaatTTAATGATAT--AAT---AT-A-NNNNNN--NNNNAATACGTATCAGATTCATATACAAT-TTCGCCAATATA--CAGACATAAATATAG-------------------AAGAAAGAGTAATATGTAAAC---AAA---GATT----------GTCACAATTCTTATAATGCTCTACAG-------------------------------CTAAAATTGAAAGCAT--TTCCC---------CC---AAT---TTGCatcactcgagtattgatatatat
gi|16 : aatgatatcaATAAAATTCATGATACAACTT---CC-A-TTCCAA--AGTTG-TACGTATCAGATATGTTTATAAA-TTCTCTAA--CA--CGGAAACAA--ATAA-------------------A-GAA----------ACAAGC---t
gi|17 : cagtgaagatatgtaaatactcgaccgactgggcgagtcagtttttgctccagataggccaaAAT---TG-------------T-TGGTC-A-CTAG-----------------TCCTACAGGGCGAGTT----ATCTTCAAAATAATTTCACACCCCTGg
gi|18 : gaaacatgacatcttgaatgaaggaaccaaattgattgaaattataaaaacagaggttagtcagacctgtggtagtccTAAAGTACATG-TATAGATT---AC-A-TTTTGA--TACTG-TATGTATGA-ATAACCATGTAAA-TACCCCAA--TA--TGTAGGTAAGTAAAG-------------------A-atcttgcatgtta
gi|19 : ctccggataggacaggtatccacatagtttatgcaaataaatttCTA--------------ATAGCTAAGCAAAGTCCATAGTGACA-G-A---AATTTGCAA-AGCATG------ATA-----ATGTCAGCT----ATTAAACTTGCCGAGAAGCAAAAATCCAAGTATA---CATGTACAATT-CAGACTAAACGATAC-ATAT--G--TCCCAaccatgctttaa
gi|2 : ATGAAGTTGAGGATACTGATT---ATGA-T--CAA---ACTG-TACATAGCAGATACATATACAAA-TTCCTCA-T-TAAACAAAAATAGATATAT-------------------A---A----------GCAAAC---A-----GTTTAA------TCATGA-AATCCTTGTAATGCTATACGGCAGA-CATGCTTA-----------------ACTTAAATTGAAAGTGT--TTTCC---------CA---TAT---TTGCTT--------AAACTA-GAGTC---CTATACACCACT----ATGGACTGTCCTGTTTATAAAA-----TATGTGTATGAATC-ATT----C----ATGCATGCTAT-TTTCCCGCCATTTACCAAAAACATAATAAATATGGTG-T-C-AAAGCTA-TTGACTTATCAATTTGCAATTTTTTGTA--------------TTAGT----CAA-------TG-AACA-G-ATATATTCTGCAT-GGCATG------ATT-----ACATCAGCT----GTTAAAATTGCTGGGTAGCAAAAACCCAAACGCA---CAGGTA-AGTTATAAATTAAACTGGACGATAA--AGCTCTCATGTGGGACCCGGAAAATAT--G--CCAAACCCAAAA----ATG-TTTA-ATTTTTTGCAGACTATTTTACAT----AAAG-TTTACT-AGGGTTGGAAAATTCAACTCGTCCACAATTAAGTTTAAATTGTATGCAGAATATGACATATGACATAAAATTTACAGTAatagggc
gi|21 : catttctgctgcaaataggacatgtacccatgtaaattacgccagtgattaa----GTTAAACTAGCCGAGAAGCAAAAATCCAAACACACTGCAGATA-AGTTACAAATCAATCGGGACAATA-------------TGGATCCCAGAAAATATGCG--C--AACCCAAAAT
gi|23 : TACGGATT---AT-A-TTTCAA--TATCG-TATGTATCAAAT
gi|3 : atcagtgcttgataggccacatatacatgtaatttatgcattatatAAAGTAAGTGATATGGATT---AT-A-TTCCAAAATACTG-TATGTATTTGATAT------AAA-TTCTCCAATGTA--CAGAAATAAATATAG-------------------A-GAA----------GCAAGC---ATA---GATTAA------TTGTCGCAATCCT-ATAATGTTCTATAGTGGAACATGCATA-----------------ACTAAAATTGAAAGTGTGAC--CC---------CC---CTT---TTGCTT--------ATTGTG-GAGTCGTCCTAAATGCTATTTATAATGGACTGTCCTATTTATAAAT-----TAGGTGTATTAATC-TTT----C----ATACATGCTAT-TTTCC-ACTGTTTGTCAAAATCATATTAAATATGGTG-T-CCAAA-CAA-TTGACT-----ACTGGTGATTTTTTCTA--------------CAAGTATAGCAAAGTCCATTGTGATA-A-A---A-TCTGCAT-GACATGGTTTAAATAAGATTATGTCAGCT----GT
gi|4 : tgatgttatttaccgcatgggagtgtaaaattccactcgtatttgtgagttgatttcactgggttgagtaaagatttgcaaatactcaaccagctgggtgagtcagtttttgctccagacaggccacgtatccacataatttacccaaagAAGATCATGATACGAATT---AT-A-TTAAAA--AACTG-TACATATCAGATACATATATAGG-TTCCCCAA--TA--CGGAAATAAATATAA-------------------A-G------------GCAAGCGTTAAA---TATAAA------CCA--AGAATCCTTATAATGTTCCACGACAAAACGAGTATA-----------------c
gi|5 : ctttttatctttatattttggtacatagtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatattttcaatatagcgaatcccaatttaacgttttaattcgatgttcatatcagggtgttaaattctactaaattttagtggggtgagtgaagatctgtaaatacccgactggctgggcgggtccgtttttacaccagatggccacgtatccgcataatttacacaaatAAGATCATGATACGGATT---AT-A-TTAAAA--AACTG-TACATATCAGATACATATATAGG-TTCCCCAA--TA--CGAAAATAAATATAA-------------------A-G------------GCAAGCGTAAAA---TATAAA------CCA--AGAATCCTTATAATGTTCCACGACAAAACG
gi|6 : tttttatctttatattttggtacatagtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatattttcaatatagcgaatcccaatttaacgttttaattcgatgttcatatcagggtgttaaattctactaaattttagtggggtgagtgaagatctgtaaatacccgactggctgggcttgtccgtttttacaccagatggccacgtatccgcataatttacacaaatATAAAGTTCATGATACGGTTT---AT-A-TTCCAA--TACTG-TACCTA------------GCAAA-TTCCCCAA--TA--TGGAAATGAATATAGC------------------A-GCA----------GTGGAA---AAATATAATTAAACTTTGTTGTCGCAATCCTTACAATGTTCTGCAGAACAACGCACATA-----------------ACT--TATAGATA-------------------------------TTGTCT--------A-------AATTGTTCTGTAAACTATT----ACGGGCTGTTCTA-----AAAAACATGTAGGTGAATAAATTATTT----C----ATGCATGATAT-TTTCCCACCACTTATCAAAATCATAATagta
gi|7 : gggtcgtaaaattccactcgcccactcacattcgatttcacaggggcgagtggagatttataaatactctgatgaccaggtgagtcagtttttgctctagataggccacgtattcacgtaatttacacaaTT-TTTATTTGCAGTATATTTTACTT----AAAA-TTTAATGAGGATTGGAA--------------AGGATTAAGGTTATTTTATATGCAGAATAT----T-TTACATAAAGTTTACAGTACTGTAATAA-AAACACAAAGACCAAATATTTGCATTAGACCATTG--ACATT-TAAATTG-TTTAAACAGTCAAAGAATCATGGCTTGTTGAATTAAGCTTGACCATTGCAAATGGCAAAAAAAAGGTGAGTGACAATTTACTATGGGCAA-CTAGATTTTATTGGTCACTTGTCCTACAGTGCGAGTG----GTCTAC-AAATAATATTACAGCCCTGC
gi|8 : GATT---AT-A-CTCCAT--TACTG-TTTGTATCAGATACGTAC-CAAC-TTTCTTAAT--A--TGGAAATAAATATAGTTTTTGTCTCAACAATCGTA-AAAT---------GTAAA----AAA---GATTTG------TTGTCACAATCCTTAAAATGGTCTATCACAGAACACGCTTA-----------------ACTAATATTGAAAGCTT--TT-CC---------CC---CGC---TTGCAT--------GCAGTA-GAATTGTCCAATACATTGTT----ATGGACTTTTTTATTTACAAAA-----TAGGTATATAAATC-TTT----C----ATGCATGCTGTATTCCCCATTGTCTCTCAAAATCATAAAAAATA--GC-----------------ACT-----ATTTGCGATTTTTTc
gi|9 : ATA-----------------CCTAAAGTTGAAAGCGT--TAACC---------CC---AAT---TTACA---------ATAGTA-GAGTCATCCTATAATCTATT----ATGGACTGTTCTATTAATGAAA-----TAGGTGTATTGATC-TTT----CGCACATGTAGGCTTT-TTTCCTGCTGTTTGTCAAAAACATAAAAAAAATGGCA-T-----------------------TTGGTGATTTCTTCTATAAAGGAACACCTGCTAGCTTTGCAAAGTCCATTGTGACA-GAA---ATTCTGCA--AACATG------ATA-----ACATCAGCT----GTTAAACTTGCTGAGACACAAAAATCTAAACACA---CA-ATA-GATTATAACTTAA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): GTGGTGTTAAATTCCACTCTGCTTGCATTTTGCAAGTTGATTTTACAGTGGGGGAGTTCAGATCTGTAAATACTAGACTGGCCAGGCAAGTCAGTTTTTGCTCCAGATAAGCCACGTATCCA
Unaligned ( gi|22 ): GGTGTAAAATTCCATGTGGGCAAGATGAATTAACTTCGGGTTGAGTGAAGACGTGTAAATACTCAACTGGCCAGGCAAGTCTGTTTTTGTA
Unaligned ( gi|24 ): AACAAGGAGTGACAATTCATCACGGGCAAACATGATTTATTGGTCACTCATCCTACA
Unaligned ( gi|25 ): AAAATAAGATCAATGTTGAATGTTTACCGATAAAAACCAT
Alignments
lowQualScore : 22 5555555555555555555555555555555555 111 111111111 222222222222222222 333333333333333333333333333 222222222222 11111 111111111 4444444444444444444444444 55555555555555 1111111 11 111111 11111 1111 111 1 333333 33333333 1 1 22222 1 1 222222 1 7777777777777777777777777 1 11 9999999999999999999999999999999999999999999999999 1111
lowQualScore : 0 2 666 3 3 2 888 3 8 1 4 77 55 4444444444444444444444444444444444 444 777 555555555 33 1 4 0 666666666666666666 0 33 777777777777777777777777777 111111111111 4 3 3 55 9999 1 11111 2 4 111111111 0 4 2 1 4 4444444444444444444444444 1 88888888888888 66 1 0 8888888 1 88 1 666666 44444 0 2222 0 5 111 0 6 1 1 6 555555 3 0 0 3 33333333 3 3 0 0 1 44444 0 0 0 3 2 0 0 1 222222 7 3 0 6 7 7 0000000000000000000000000 3 0 7 3 1 66 1111111111111111111111111111111111111111111111111 1 7777 3 0 1
lowQualScore : . . ... . . . ... . . . . .. .. .................................. ... ... ......... .. . . . .................. . .. ........................... ............ . . . .. .... . ..... . . ......... . . . . . ......................... . .............. .. . . ....... . .. . ...... ..... . .... . . ... . . . . . ...... . . . . ........ . . . . . ..... . . . . . . . . ...... . . . . . . ......................... . . . . . .. ................................................. . .... . . .
lowQualScore : 1 3 444 6 6 2 555 6 0 3 0 55 55 8888888888888888888888888888888888 000 888 999999999 77 1 6 7 111111111111111111 9 00 222222222222222222222222222 444444444444 4 7 7 66 4444 9 11111 6 4 777777777 1 4 7 7 9 8888888888888888888888888 4 88888888888888 99 9 1 4444444 7 11 4 444444 33333 4 1111 7 2 777 8 7 0 0 5 222222 2 2 2 2 88888888 2 3 0 2 0 55555 0 8 2 2 5 2 8 0 222222 3 3 7 7 3 3 7777777777777777777777777 3 7 3 7 0 00 0000000000000000000000000000000000000000000000000 0 0000 2 8 0
consensus : NNNNATAAAGTTCATGATACGGATT---AT-A-TTCCAA--TACTG-TACGTATCAGATACGTATACAAA-TTCCCCAAT-TA--CGGAAATAAATATAG-------------------A-GAA----------GCAAGC---AAA---GATTAA------TCGTCACAATCCTTATAATGTTCTACGGCAGAACGCGCATA-----------------ACTAAAATTGAAAGCGT--T--CC---------CC---NAT---TTGCNT--------ATAGTA-GAGTCGTCCTATACGCTATT----ATGGACTGTTCTATTTATAAAA-----TAGGTGTATNAATC-TTT----C----ATGCATGCTAT-TTTCCCGCCGTTTGTCAAAAACATAATAAATATGGCG-T-C-AAA-CAA-TTGACT-----ATTGGCGATTTCTTCTA--------------CTAGCTTAGCAAAGTCCATTGTGACA-G-A---ATTCTGCAC-GACACG------ATA-----ACGTCAGCT----GTTAAACTTGCCGAGACGCAAAAATCCAAACACA---CAGATA-AGTTATAAATTAANCNGGACGATAT--A--TCCCATGTGGGCCCCGGAAAATAT--G--C--AACCCAAAATTATATG-TTTT-TTTGTTTGCAGAATATTTTACNT----AAAG-TTTACTNAGGGTTGGAAAATTCAACTCGTCCAAGATTAAGTTTAATTTGTATGNAGAATAT----T-TTACATAAAGTTTACAGTACTATTATAA-AAACACGAAGACCAAATATTTTGATTAGACCATTG--A---T-TAAGTTG-TTT-AACGGTCAAAGAATCGTGGCTTGTTGAATTTAGCTCGATCATTGNAAATGACGAAAAAA---TG-------------TATGGTC-A-CTAG-----------------TCCTACAGGGCGAGTG----ATCTACAAAATAATTTTACANCCCTGC
Reference ( family-5610 ) : NNNNATAAAGTTCATGATACGGATT---AT-A-TTCCAA--TACTG-TACGTATCAGATACGTATACAAA-TTCCCCAAT-TA--CGGAAATAAATATAG-------------------A-GAA----------GCAAGC---AAA---GATTAA------TCGTCACAATCCTTATAATGTTCTACGGCAGAACGCGCATA-----------------ACTAAAATTGAAAGCGT--T--CC---------CC---NAT---TTGCNT--------ATAGTA-GAGTCGTCCTATACGCTATT----ATGGACTGTTCTATTTATAAAA-----TAGGTGTATNAATC-TTT----C----ATGCATGCTAT-TTTCCCGCCGTTTGTCAAAAACATAATAAATATGGCG-T-C-AAA-CAA-TTGACT-----ATTGGCGATTTCTTCTA--------------CTAGCTTAGCAAAGTCCATTGTGACA-G-A---ATTCTGCAC-GACACG------ATA-----ACGTCAGCT----GTTAAACTTGCCGAGACGCAAAAATCCAAACACA---CAGATA-AGTTATAAATTAANCNGGACGATAT--A--TCCCATGTGGGCCCCGGAAAATAT--G--C--AACCCAAAATTATATG-TTTT-TTTGTTTGCAGAATATTTTACNT----AAAG-TTTACTNAGGGTTGGAAAATTCAACTCGTCCAAGATTAAGTTTAATTTGTATGNAGAATAT----T-TTACATAAAGTTTACAGTACTATTATAA-AAACACGAAGACCAAATATTTTGATTAGACCATTG--A---T-TAAGTTG-TTT-AACGGTCAAAGAATCGTGGCTTGTTGAATTTAGCTCGATCATTGNAAATGACGAAAAAA---TG-------------TATGGTC-A-CTAG-----------------TCCTACAGGGCGAGTG----ATCTACAAAATAATTTTACANCCCTGC
gi|1 : ATAAAGTTTATGATACATATTCCAAT-AATTTTAA--TACTG-TACACATCAGATATATATACAAAATTGCCCAATGTA--TGGAAATAAATATAG-------------------A-GAA----------GCAAGC---AAA---GATTAA------TTGCCACAATCCT-ATAATGCTCTACGGCGGAACGCGTATA-----------------CCTAAAATTTAAAGTTT--T--TC---------CT---TAT---TTGGTT--------GTAGTA-GAATCATCCTATACACTATT----ATAGCATGTCCTATTTATTAAA-----TAGGTG---AAGTC-TTT----C----ATATATGCTAT-TTTTCCGCAGTTTGCCAAAAACATAATAAATATGGCGCC-C-AAA-CAATTTGACT-----ATTAGTGATTTCTTCTA--------------CTAGCTTAGTAAAGTCCATAGTGACACG-A---ATTTTTCAC-AACACG------ATT-----ACCTCAGCTCTTAATTAAACTAGCTGAGATGCAAAAATCCAAACACA---CAGATA-AGTTATAAACTAATCTGGATGACATTGA--TCCCATATGGGCCCTGGAAAATAT--GCAC--AACCCAAAATTATGTGATTTT-TTTGTTTGAAGAATATTTTACTTTTAAAAAG-TTTACTCAAGGTTATAAAATTCAACTCCTCTAAGATTTAATTTAATTTGTATGAAGAATAT----T-TTACAAAAAGTTTACAGTCCTATTAT-A-AAACACAAAGA-CAAAT-TTTTG-TT-------------------------TTT-AACGGTCAAAGAACCATCACTTGTTGAATTTAGCTCGATCATTGAAACTGAC-AAAAAA---TG-------------TATGGTC-A-TTAG-----------------TCCAACAGGACGAGTGTTGAATCTACAAAATAATTTTGCACCCCTGC
gi|10 : cataATA-----------------CCTAAAGTTGAAAGCGT--TAACC---------CC---AAT---TTACA---------ATAGTA-GAGTCATCCTATAATCTATT----ATGGACTGTTCTATTAATGAAA-----TAGGTGTATTGATC-TTTCGCAC----ATGTAGGCTTT-TTTCCTGCTGTTTGTCAAAAACATAA-AAAAATGGCA-T-----------------------TTGGTGATTTCTTCTATAAAGGAACACCTGCTAGCTTTGCAAAGTCCATTGTGACA-GAA---ATTCTGCA--AACATG------ATA-----ACATCAGCT----GTTAAACTTGCTGAGACACAAAAATCTAAACACA---CA-ATA-GATTATAACTTAAtatatatatctcattgaagatactgtcaacttct
gi|11 : ccatgAAAC---AAA---GATTA---------GTTACAA-----GTAATGTTCTACAGCAGAACACGCATAACTTTAAACACCCCATAACTAAAGTTGAAAGTGT--T--TCCCTCCCCACCC---CACACCCTGCCCCCCCCTCCATAGGATGA------CTATACGCTATA----ATGGACTGTTCCATTTATAAAA-----TAGGTGTATTAATC-TTT----C----ATGCATGCTAT-TTTCATGCCATTTGTCGAATACATAGTAAATACGGCG-TCC-AAA-TAA-TTGACT-----ATGGGCAGTTTCATCTA--------------
gi|12 : actACGGCACCATGCGCATG-----------------ACTCAAATTGAAAAACT--T--TC---------CTATAAATA--TTGTAT--------A-AATG-GACTAGGTCCATACCTTATT----ATGGACCATTCTA-TTAAAAAA-----TAGATGT---------------------------TTGT-TTGCTTGCTGTTTGTCAAAAAC---AGAAATATGGCC-T-CAAAA-CAA-TTGAAT-----A---GTGATTTCTTT-------------------G--TAAAAAAGTCTATTACGACACA-A---ATATTG-ACTGAAACG------ATA-----ATGaaaaaggaacacttactag
gi|13 : --TCACATGTGGACCCTGGA----------------CTCAAAATTATATG-TTTTATTTGTTTGCAGAATATTTTACAT------AGTTTTTCTAAGAGTTTGGAAATTCAACTCGTCCAAGATTAAATTTAATTTGTATAAAGAATAT----T-TTACATAAAGTTTACAGTACTATTATAATTACCATGAAGACAAAATATTTTGATAAGATCATTGTAA---TATAAGTTATTTT-AACGGTCAataatttaatgtcatct
gi|14 : CGGTCAAAGAATCGTGGC---TTGATTTTAGAGGGATCATTGAAAATGACT-AAAAA---TG-------------TA-----------------------------------AGGGCGAGTG----A
gi|14 : TTACTATAAAGGACGAGAAGAC--TT-------------TATTGTT-AACTAG-----------------CCATACAGGGCAAATG----ATCTACAAAATAACTTTCCAGCCCTGcaatttactataaaggacgagaagactttattgttaactagccatacagggcaaatgatctacaaaataactttccagccctgatcactcgagtattgatatatat
gi|15 : cggtcaaagaatcgtggcttgattttagagggatcattgaaaatgactaaaaatgtaagggcgagtgacaatTTAATGATAT--AAT---AT-A-NNNNNN--NNNNAATACGTATCAGATTCATATACAAT-TTCGCCAATATA--CAGACATAAATATAG-------------------AAGAAAGAGTAATATGTAAAC---AAA---GATT----------GTCACAATTCTTATAATGCTCTACAG-------------------------------CTAAAATTGAAAGCAT--TTCCC---------CC---AAT---TTGCatcactcgagtattgatatatat
gi|16 : aatgatatcaATAAAATTCATGATACAACTT---CC-A-TTCCAA--AGTTG-TACGTATCAGATATGTTTATAAA-TTCTCTAA--CA--CGGAAACAA--ATAA-------------------A-GAA----------ACAAGC---t
gi|17 : cagtgaagatatgtaaatactcgaccgactgggcgagtcagtttttgctccagataggccaaAAT---TG-------------T-TGGTC-A-CTAG-----------------TCCTACAGGGCGAGTT----ATCTTCAAAATAATTTCACACCCCTGg
gi|18 : gaaacatgacatcttgaatgaaggaaccaaattgattgaaattataaaaacagaggttagtcagacctgtggtagtccTAAAGTACATG-TATAGATT---AC-A-TTTTGA--TACTG-TATGTATGA-ATAACCATGTAAA-TACCCCAA--TA--TGTAGGTAAGTAAAG-------------------A-atcttgcatgtta
gi|19 : ctccggataggacaggtatccacatagtttatgcaaataaatttCTA--------------ATAGCTAAGCAAAGTCCATAGTGACA-G-A---AATTTGCAA-AGCATG------ATA-----ATGTCAGCT----ATTAAACTTGCCGAGAAGCAAAAATCCAAGTATA---CATGTACAATT-CAGACTAAACGATAC-ATAT--G--TCCCAaccatgctttaa
gi|2 : ATGAAGTTGAGGATACTGATT---ATGA-T--CAA---ACTG-TACATAGCAGATACATATACAAA-TTCCTCA-T-TAAACAAAAATAGATATAT-------------------A---A----------GCAAAC---A-----GTTTAA------TCATGA-AATCCTTGTAATGCTATACGGCAGA-CATGCTTA-----------------ACTTAAATTGAAAGTGT--TTTCC---------CA---TAT---TTGCTT--------AAACTA-GAGTC---CTATACACCACT----ATGGACTGTCCTGTTTATAAAA-----TATGTGTATGAATC-ATT----C----ATGCATGCTAT-TTTCCCGCCATTTACCAAAAACATAATAAATATGGTG-T-C-AAAGCTA-TTGACTTATCAATTTGCAATTTTTTGTA--------------TTAGT----CAA-------TG-AACA-G-ATATATTCTGCAT-GGCATG------ATT-----ACATCAGCT----GTTAAAATTGCTGGGTAGCAAAAACCCAAACGCA---CAGGTA-AGTTATAAATTAAACTGGACGATAA--AGCTCTCATGTGGGACCCGGAAAATAT--G--CCAAACCCAAAA----ATG-TTTA-ATTTTTTGCAGACTATTTTACAT----AAAG-TTTACT-AGGGTTGGAAAATTCAACTCGTCCACAATTAAGTTTAAATTGTATGCAGAATATGACATATGACATAAAATTTACAGTAatagggc
gi|21 : catttctgctgcaaataggacatgtacccatgtaaattacgccagtgattaa----GTTAAACTAGCCGAGAAGCAAAAATCCAAACACACTGCAGATA-AGTTACAAATCAATCGGGACAATA-------------TGGATCCCAGAAAATATGCG--C--AACCCAAAAT
gi|23 : TACGGATT---AT-A-TTTCAA--TATCG-TATGTATCAAAT
gi|3 : atcagtgcttgataggccacatatacatgtaatttatgcattatatAAAGTAAGTGATATGGATT---AT-A-TTCCAAAATACTG-TATGTATTTGATAT------AAA-TTCTCCAATGTA--CAGAAATAAATATAG-------------------A-GAA----------GCAAGC---ATA---GATTAA------TTGTCGCAATCCT-ATAATGTTCTATAGTGGAACATGCATA-----------------ACTAAAATTGAAAGTGTGAC--CC---------CC---CTT---TTGCTT--------ATTGTG-GAGTCGTCCTAAATGCTATTTATAATGGACTGTCCTATTTATAAAT-----TAGGTGTATTAATC-TTT----C----ATACATGCTAT-TTTCC-ACTGTTTGTCAAAATCATATTAAATATGGTG-T-CCAAA-CAA-TTGACT-----ACTGGTGATTTTTTCTA--------------CAAGTATAGCAAAGTCCATTGTGATA-A-A---A-TCTGCAT-GACATGGTTTAAATAAGATTATGTCAGCT----GT
gi|4 : tgatgttatttaccgcatgggagtgtaaaattccactcgtatttgtgagttgatttcactgggttgagtaaagatttgcaaatactcaaccagctgggtgagtcagtttttgctccagacaggccacgtatccacataatttacccaaagAAGATCATGATACGAATT---AT-A-TTAAAA--AACTG-TACATATCAGATACATATATAGG-TTCCCCAA--TA--CGGAAATAAATATAA-------------------A-G------------GCAAGCGTTAAA---TATAAA------CCA--AGAATCCTTATAATGTTCCACGACAAAACGAGTATA-----------------c
gi|5 : ctttttatctttatattttggtacatagtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatattttcaatatagcgaatcccaatttaacgttttaattcgatgttcatatcagggtgttaaattctactaaattttagtggggtgagtgaagatctgtaaatacccgactggctgggcgggtccgtttttacaccagatggccacgtatccgcataatttacacaaatAAGATCATGATACGGATT---AT-A-TTAAAA--AACTG-TACATATCAGATACATATATAGG-TTCCCCAA--TA--CGAAAATAAATATAA-------------------A-G------------GCAAGCGTAAAA---TATAAA------CCA--AGAATCCTTATAATGTTCCACGACAAAACG
gi|6 : tttttatctttatattttggtacatagtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatattttcaatatagcgaatcccaatttaacgttttaattcgatgttcatatcagggtgttaaattctactaaattttagtggggtgagtgaagatctgtaaatacccgactggctgggcttgtccgtttttacaccagatggccacgtatccgcataatttacacaaatATAAAGTTCATGATACGGTTT---AT-A-TTCCAA--TACTG-TACCTA------------GCAAA-TTCCCCAA--TA--TGGAAATGAATATAGC------------------A-GCA----------GTGGAA---AAATATAATTAAACTTTGTTGTCGCAATCCTTACAATGTTCTGCAGAACAACGCACATA-----------------ACT--TATAGATA-------------------------------TTGTCT--------A-------AATTGTTCTGTAAACTATT----ACGGGCTGTTCTA-----AAAAACATGTAGGTGAATAAATTATTT----C----ATGCATGATAT-TTTCCCACCACTTATCAAAATCATAATagta
gi|7 : gggtcgtaaaattccactcgcccactcacattcgatttcacaggggcgagtggagatttataaatactctgatgaccaggtgagtcagtttttgctctagataggccacgtattcacgtaatttacacaaTT-TTTATTTGCAGTATATTTTACTT----AAAA-TTTAATGAGGATTGGAA--------------AGGATTAAGGTTATTTTATATGCAGAATAT----T-TTACATAAAGTTTACAGTACTGTAATAA-AAACACAAAGACCAAATATTTGCATTAGACCATTG--ACATT-TAAATTG-TTTAAACAGTCAAAGAATCATGGCTTGTTGAATTAAGCTTGACCATTGCAAATGGCAAAAAAAAGGTGAGTGACAATTTACTATGGGCAA-CTAGATTTTATTGGTCACTTGTCCTACAGTGCGAGTG----GTCTAC-AAATAATATTACAGCCCTGC
gi|8 : GATT---AT-A-CTCCAT--TACTG-TTTGTATCAGATACGTAC-CAAC-TTTCTTAAT--A--TGGAAATAAATATAGTTTTTGTCTCAACAATCGTA-AAAT---------GTAAA----AAA---GATTTG------TTGTCACAATCCTTAAAATGGTCTATCACAGAACACGCTTA-----------------ACTAATATTGAAAGCTT--TT-CC---------CC---CGC---TTGCAT--------GCAGTA-GAATTGTCCAATACATTGTT----ATGGACTTTTTTATTTACAAAA-----TAGGTATATAAATC-TTT----C----ATGCATGCTGTATTCCCCATTGTCTCTCAAAATCATAAAAAATA--GC-----------------ACT-----ATTTGCGATTTTTTc
gi|9 : ATA-----------------CCTAAAGTTGAAAGCGT--TAACC---------CC---AAT---TTACA---------ATAGTA-GAGTCATCCTATAATCTATT----ATGGACTGTTCTATTAATGAAA-----TAGGTGTATTGATC-TTT----CGCACATGTAGGCTTT-TTTCCTGCTGTTTGTCAAAAACATAAAAAAAATGGCA-T-----------------------TTGGTGATTTCTTCTATAAAGGAACACCTGCTAGCTTTGCAAAGTCCATTGTGACA-GAA---ATTCTGCA--AACATG------ATA-----ACATCAGCT----GTTAAACTTGCTGAGACACAAAAATCTAAACACA---CA-ATA-GATTATAACTTAA
blockSeqs : A . G . N AAT A A A . TA AA TTTTTGTCTCAACAATCGTAAAAT GTT TAT AACTTTGTT TT C T ACTTTAAACACCCCATAA CG TTCCCTCCCCACCCCACACC CCCCCCCTCCAT T G A AT TATA T ACATG T A CGCAC A T T T GTCAAAGCTATTGACTTATCA G TAAAGGAACACCTG CT T GATAT T CT T GTTTAA AGATT . C CTG T C A G G AAGC A A GCCA T . A A A T A A G A GACATA A T C A A AGATCATTGTAATATAAGTTAT A T G A GA AGGTGAGTGACAATTTACTATGGGCAACTAGATTTTATTGGTCACTTG T . A G
blockSeqs : A . . . C N . G A . TG . AAGAAAGAGTAATAT GTA . ATC TC C T C TG TTCCTATAAATA TTAA . C G CG . T . T . CGCAC . T C G GTCCAAATAATTGACT G TAAAGGAACACCTG CT A GAA T A C . . . A . G . A T A TG C A GCGC T . . A A . G A G C T A . C A A AGACCATTGACATTTAAATTG . . T T AA CTTTATTGTTAACTAG T . A C
blockSeqs : T . . . T A . C G . T . CAGCA . . ATT TG C T A AC TAACCCCAAT TTAT . G G CC . T . G . C . T T T CTCAAAACAATTGAAT T . TA A CAA A T T . . . A . G . T G . . T . . . . T . . . . . C T C T TGTTGGTCACTAG T . . G
blockSeqs : G . . . T T . A A . T . AGAA . . ACC TC G T A CA TTCCCCCAAT ATGC . G G CA . T . T . C . C C T GTCCAAACAATTGACT G . CT A GAA T T T . . . A . . . . TGTA . .
blockSeqs : G . . . C T . A A . . . AGAA . . ACC TC G T A TG TTTCCCATAT AAT . A G TG . T . A . C . C T T ACT T . T T GA T . T . . . C . . .
blockSeqs : G . . . A A . A A . . . AA . . GTT TC C T A TG GACCCCCCTT ATA . A A AA . T . A . C . C C A AT G . . . AA . . T . . .
blockSeqs : G . . . A A . G G . . . AG . . . . C . A CT TAACCCCAAT CTA . G . CA . . . T . C . T T A AT . .
blockSeqs : G . . . C T . . . . . . AG . . . . . . C CG TTCCCCCGC AAT . . . AT . . . . . . . . T .
blockSeqs : . . . . C T . . . . . . . . . .
blockSeqs : . . . . . .
blockSeqCons : *** ** AGAA****************************** TANCCCCAAT***************** ATAT******** GTCAAACATTGACT*********** **** TATTGTACTG*************************************** ****
originalCons : NNNNATAAAGTTCATGATACGGATT---AT-A-TTCCAA--TACTG-TACGTATCAGATACGTATACAAA-TTCCCCAAT-TA--CGGAAATAAATATAG-------------------A-GAA----------GCAAGC---AAA---GATTAA------TCGTCACAATCCTTATAATGTTCTACGGCAGAACGCGCATA-----------------ACTAAAATTGAAAGCGT--T--CC---------CC---NAT---TTGCNT--------ATAGTA-GAGTCGTCCTATACGCTATT----ATGGACTGTTCTATTTATAAAA-----TAGGTGTATNAATC-TTT----C----ATGCATGCTAT-TTTCCCGCCGTTTGTCAAAAACATAATAAATATGGCG-T-C-AAA-CAA-TTGACT-----ATTGGCGATTTCTTCTA--------------CTAGCTTAGCAAAGTCCATTGTGACA-G-A---ATTCTGCAC-GACACG------ATA-----ACGTCAGCT----GTTAAACTTGCCGAGACGCAAAAATCCAAACACA---CAGATA-AGTTATAAATTAANCNGGACGATAT--A--TCCCATGTGGGCCCCGGAAAATAT--G--C--AACCCAAAATTATATG-TTTT-TTTGTTTGCAGAATATTTTACNT----AAAG-TTTACTNAGGGTTGGAAAATTCAACTCGTCCAAGATTAAGTTTAATTTGTATGNAGAATAT----T-TTACATAAAGTTTACAGTACTATTATAA-AAACACGAAGACCAAATATTTTGATTAGACCATTG--A---T-TAAGTTG-TTT-AACGGTCAAAGAATCGTGGCTTGTTGAATTTAGCTCGATCATTGNAAATGACGAAAAAA---TG-------------TATGGTC-A-CTAG-----------------TCCTACAGGGCGAGTG----ATCTACAAAATAATTTTACANCCCTGC
finalCons : NNNNATAAAGTTCATGATACGGATT---AT-A-TTCCAA--TACTG-TACGTATCAGATACGTATACAAA-TTCCCCAA--TA--CGGAAATAAATATAGAGAA------------------------------GCAAGC---AAA---GATTAA------TCGTCACAATCCTTATAATGTTCTACGGCAGAACGCGCATA-----------------ACTAAAATTGAAAGCGTTANCCCCAAT-----------------TTGCATAT--------AGTA-GAGTCGTCCTATACGCTATT----ATGGACTGTTCTATTTATAAAA-----TAGGTGTATNAATC-TTT----C----ATGCATGCTAT-TTTCCCGCCGTTTGTCAAAAACATAATAAATATGGCGTCAAACATTGACT-----------ATTGGCGATTTCTTCTA--------------CTAGCTTAGCAAAGTCCATTGTGACA-G-A---ATTCTGCAC-GACACG------ATA-----ACGTCAGCT----GTTAAACTTGCCGAGACGCAAAAATCCAAACACA---CAGATA-AGTTATAAATTAANCNGGACGATAT--A--TCCCATGTGGGCCCCGGAAAATAT--G--C--AACCCAAAATTATATG-TTTT-TTTGTTTGCAGAATATTTTACNT----AAAG-TTTACTNAGGGTTGGAAAATTCAACTCGTCCAAGATTAAGTTTAATTTGTATGNAGAATAT----T-TTACATAAAGTTTACAGTACTATTATAA-AAACACGAAGACCAAATATTTTGATTAGACCATTG--A---T-TAAGTTG-TTT-AACGGTCAAAGAATCGTGGCTTGTTGAATTTAGCTCGATCATTGNAAATGACGAAAAAATATTGTACTG---------------------------------------TCCTACAGGGCGAGTG----ATCTACAAAATAATTTTACANCCCTGC
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): GTGGTGTTAAATTCCACTCTGCTTGCATTTTGCAAGTTGATTTTACAGTGGGGGAGTTCAGATCTGTAAATACTAGACTGGCCAGGCAAGTCAGTTTTTGCTCCAGATAAGCCACGTATCCA
Unaligned ( gi|22 ): GGTGTAAAATTCCATGTGGGCAAGATGAATTAACTTCGGGTTGAGTGAAGACGTGTAAATACTCAACTGGCCAGGCAAGTCTGTTTTTGTA
Unaligned ( gi|24 ): AACAAGGAGTGACAATTCATCACGGGCAAACATGATTTATTGGTCACTCATCCTACA
Unaligned ( gi|25 ): AAAATAAGATCAATGTTGAATGTTTACCGATAAAAACCAT
Alignments
lowQualScore : 11 555555555555555555555555555555555 111 111111111 222222222222222222 33333333333 11111111 222222222222 11111 111111111 666666666666666666666666 55555555555555 1111111 11 111111 11111 1111 111 1 333333 333333333 1 1 22222 1 1 222222 1 7777777777777777777777777 1 6666666666666666666666 1111
lowQualScore : 0 2 666 3 3 2 888 3 8 1 4 55 11 55 444444444444444444444444444444444 444 777 555555555 33 1 4 0 666666666666666666 0 4 33 33333333333 4 22222222 555555555555 4 3 3 55 9999 1 11111 2 4 111111111 0 4 1 4 3 333333333333333333333333 1 88888888888888 66 1 0 8888888 1 88 1 666666 44444 0 2222 0 5 111 0 6 1 1 6 555555 3 0 0 3 000000000 3 3 0 0 1 44444 0 0 0 3 2 0 0 1 222222 7 3 0 6 7 7 0000000000000000000000000 3 0 7 3 1 4 3333333333333333333333 0 99 7777 3 0 1
lowQualScore : . . ... . . . ... . . . . .. .. .. ................................. ... ... ......... .. . . . .................. . . .. ........... . ........ ............ . . . .. .... . ..... . . ......... . . . . . ........................ . .............. .. . . ....... . .. . ...... ..... . .... . . ... . . . . . ...... . . . . ......... . . . . . ..... . . . . . . . . ...... . . . . . . ......................... . . . . . . ...................... . .. .... . . .
lowQualScore : 1 3 444 6 6 2 555 6 0 3 0 55 00 55 888888888888888888888888888888888 000 888 999999999 77 1 6 7 111111111111111111 9 0 99 22222222222 0 11111111 444444444444 4 7 7 66 4444 9 11111 6 4 777777777 1 4 7 9 4 000000000000000000000000 4 88888888888888 99 9 1 4444444 7 11 4 444444 33333 4 1111 7 2 777 8 7 0 0 5 222222 2 2 2 2 888888888 2 3 0 2 0 55555 0 8 2 2 5 2 8 0 222222 3 3 7 7 3 3 7777777777777777777777777 3 7 3 7 0 2 4444444444444444444444 6 00 0000 2 8 0
consensus : NNNNATAAAGTTCATGATACGGATT---AT-A-TTCCAA--TACTG-TACGTATCAGATACGTATACAAA-TTCCCCA--AT--A--CGGAAATAAATATAG-------------------AGAA----------GCAAGC---AAA---GATTAA------TCGTCACAATCCTTATAATGTTCTACGGCAGAACGCGCATA-----------------ACTAAAATTG-AAAGCGTT---------ACCCC-C---A-AT-TTGCNT--------ATAGTA-GAGTCGTCCTATACGCTATT----ATGGACTGTTCTATTTATAAAA-----TAGGTGTATNAATC-TTT----C----ATGCATGCTAT-TTTCCCGCCGTTTGTCAAAAACATAATAAATATGGCGT-C-AAA--CAA--TTGACT-----ATTGGCGATTTCTTCTA--------------CTAGCTTAGCAAAGTCCATTGTGACA-G-A---ATTCTGCAC-GACACG------ATA-----ACGTCAGCT----GTTAAACTTGCCGAGACGCAAAAATCCAAACACA---CAGATA-AGTTATAAATTAANCNGGACGATAT--A--TCCCATGTGGGCCCCGGAAAATAT--GC--A--ACCCAAAATTATATG-TTTT-TTTGTTTGCAGAATATTTTACNT----AAAG-TTTACTNAGGGTTGGAAAATTCAACTCGTCCAAGATTAAGTTTAATTTGTATGNAGAATAT----T-TTACATAAAGTTTACAGTACTATTATAA-AAACACGAAGACCAAATATTTTGATTAGACCATTG--A---T-TAAGTTG-TTT-AACGGTCAAAGAATCGTGGCTTGTTGAATTTAGCTCGATCATTGNAAATGACGAAAAA-A---TATTG--TT----ACTAGTCC-TACAGGGCGAGTG----ATCTACAAAATAATTTTACANCCCTGC
Reference ( family-5610 ) : NNNNATAAAGTTCATGATACGGATT---AT-A-TTCCAA--TACTG-TACGTATCAGATACGTATACAAA-TTCCCCA--AT--A--CGGAAATAAATATAG-------------------AGAA----------GCAAGC---AAA---GATTAA------TCGTCACAATCCTTATAATGTTCTACGGCAGAACGCGCATA-----------------ACTAAAATTG-AAAGCGTT---------ANCCC-C---A-AT-TTGCAT--------ATAGTA-GAGTCGTCCTATACGCTATT----ATGGACTGTTCTATTTATAAAA-----TAGGTGTATNAATC-TTT----C----ATGCATGCTAT-TTTCCCGCCGTTTGTCAAAAACATAATAAATATGGCGT-C-AAA--C-A--TTGACT-----ATTGGCGATTTCTTCTA--------------CTAGCTTAGCAAAGTCCATTGTGACA-G-A---ATTCTGCAC-GACACG------ATA-----ACGTCAGCT----GTTAAACTTGCCGAGACGCAAAAATCCAAACACA---CAGATA-AGTTATAAATTAANCNGGACGATAT--A--TCCCATGTGGGCCCCGGAAAATAT--GC--A--ACCCAAAATTATATG-TTTT-TTTGTTTGCAGAATATTTTACNT----AAAG-TTTACTNAGGGTTGGAAAATTCAACTCGTCCAAGATTAAGTTTAATTTGTATGNAGAATAT----T-TTACATAAAGTTTACAGTACTATTATAA-AAACACGAAGACCAAATATTTTGATTAGACCATTG--A---T-TAAGTTG-TTT-AACGGTCAAAGAATCGTGGCTTGTTGAATTTAGCTCGATCATTGNAAATGACGAAAAA-A---TATTG--T-----ACT-GTCC-TACAGGGCGAGTG----ATCTACAAAATAATTTTACANCCCTGC
gi|1 : ATAAAGTTTATGATACATATTCCAAT-AATTTTAA--TACTG-TACACATCAGATATATATACAAAATTGCCCA--ATGTA--TGGAAATAAATATAG-------------------AGAA----------GCAAGC---AAA---GATTAA------TTGCCACAATCCT-ATAATGCTCTACGGCGGAACGCGTATA-----------------CCTAAAATTT-AAAG--TT---------TTTCC-T---T-AT-TTGGTT--------GTAGTA-GAATCATCCTATACACTATT----ATAGCATGTCCTATTTATTAAA-----TAGGTG---AAGTC-TTT----C----ATATATGCTAT-TTTTCCGCAGTTTGCCAAAAACATAATAAATATGGCGC-CCAAA--C-AATTTGACT-----ATTAGTGATTTCTTCTA--------------CTAGCTTAGTAAAGTCCATAGTGACACG-A---ATTTTTCAC-AACACG------ATT-----ACCTCAGCTCTTAATTAAACTAGCTGAGATGCAAAAATCCAAACACA---CAGATA-AGTTATAAACTAATCTGGATGACATTGA--TCCCATATGGGCCCTGGAAAATAT--GC--ACAACCCAAAATTATGTGATTTT-TTTGTTTGAAGAATATTTTACTTTTAAAAAG-TTTACTCAAGGTTATAAAATTCAACTCCTCTAAGATTTAATTTAATTTGTATGAAGAATAT----T-TTACAAAAAGTTTACAGTCCTATTAT-A-AAACACAAAGA-CAAAT-TTTTG-TT-------------------------TTT-AACGGTCAAAGAACCATCACTTGTTGAATTTAGCTCGATCATTGAAACTGACAAAAAATG---TATGG--TC----ATTAGTCC-AACAGGACGAGTGTTGAATCTACAAAATAATTTTGCACCCCTGC
gi|10 : cataATA-----------------CCTAAAGTTG-AAAGCGTT---------AACCC-C---A-AT-TTACA---------ATAGTA-GAGTCATCCTATAATCTATT----ATGGACTGTTCTATTAATGAAA-----TAGGTGTATTGATC-TTT----CGCACATGTAGGCTTT-TTTCCTGCTGTTTGTCAAAAACATAA-AAAAATGGCAT-------------------------TTGGTGATTTCTTCTATAAAGGAACACCTGCTAGCTTTGCAAAGTCCATTGTGACA-GAA---ATTCTGCA--AACATG------ATA-----ACATCAGCT----GTTAAACTTGCTGAGACACAAAAATCTAAACACA---CA-ATA-GATTATAACTTAAtatatatatctcattgaagatactgtcaacttct
gi|11 : ccatgAAAC---AAA---GATTA---------GTTACAA-----GTAATGTTCTACAGCAGAACACGCATAACTTTAAACACCCCATAACTAAAGTTG-AAAGTGTTTCCCTCCCCACCCCAC---A-CC-CTGCCCCCCCCTCCATAGGATGA------CTATACGCTATA----ATGGACTGTTCCATTTATAAAA-----TAGGTGTATTAATC-TTT----C----ATGCATGCTAT-TTTCATGCCATTTGTCGAATACATAGTAAATACGGCGTCC-AAA--TAA--TTGACT-----ATGGGCAGTTTCATCTA--------------
gi|12 : actACGGCACCATGCGCATG-----------------ACTCAAATTGAAAAACTTT------------CC-TATAA-ATATTGTAT--------A-AATG-GACTAGGTCCATACCTTATT----ATGGACCATTCTA-TTAAAAAA-----TAGATGT---------------------------TTGT-TTGCTTGCTGTTTGTCAAAAAC---AGAAATATGGCCT-CAAAA--CAA--TTGAAT-----A---GTGATTTCTTT-------------------G--TAAAAAAGTCTATTACGACACA-A---ATATTG-ACTGAAACG------ATA-----ATGaaaaaggaacacttactag
gi|13 : --TCACATGTGGACCCTGGA----------------CTCAAAATTATATG-TTTTATTTGTTTGCAGAATATTTTACAT------AGTTTTTCTAAGAGTTTGGAAATTCAACTCGTCCAAGATTAAATTTAATTTGTATAAAGAATAT----T-TTACATAAAGTTTACAGTACTATTATAATTACCATGAAGACAAAATATTTTGATAAGATCATTGTAA---TATAAGTTATTTT-AACGGTCAataatttaatgtcatct
gi|14 : CGGTCAAAGAATCGTGGC---TTGATTTTAGAGGGATCATTGAAAATGACTAAAAA--------TG--T-----A-----------AGGGCGAGTG----A
gi|14 : TTACTATAAAGGACGAGAAG-ACTTTATTG--TTA---ACT-AGCCATACAGGGCAAATG----ATCTACAAAATAACTTTCCAGCCCTGcaatttactataaaggacgagaagactttattgttaactagccatacagggcaaatgatctacaaaataactttccagccctgatcactcgagtattgatatatat
gi|15 : cggtcaaagaatcgtggcttgattttagagggatcattgaaaatgactaaaaatgtaagggcgagtgacaatTTAATGATAT--AAT---AT-A-NNNNNN--NNNNAATACGTATCAGATTCATATACAAT-TTCGCCAATAT--A--CAGACATAAATATAGA------------------AGAAAGAGTAATATGTAAAC---AAA---GATT----------GTCACAATTCTTATAATGCTCTACAG-------------------------------CTAAAATTG-AAAGCATT---------TCCCC-C---A-AT-TTGCatcactcgagtattgatatatat
gi|16 : aatgatatcaATAAAATTCATGATACAACTT---CC-A-TTCCAA--AGTTG-TACGTATCAGATATGTTTATAAA-TTCTCTA--AC--A--CGGAAACAA--ATAA-------------------AGAA----------ACAAGC---t
gi|17 : cagtgaagatatgtaaatactcgaccgactgggcgagtcagtttttgctccagataggccaaATTG--TTGGTCACTAGTCC-TACAGGGCGAGTT----ATCTTCAAAATAATTTCACACCCCTGg
gi|18 : gaaacatgacatcttgaatgaaggaaccaaattgattgaaattataaaaacagaggttagtcagacctgtggtagtccaTAAAGTACATG-TATAGATT---AC-A-TTTTGA--TACTG-TATGTATGA-ATAACCATGTAAA-TACCCCA--AT--A--TGTAGGTAAGTAAAG-------------------Aatcttgcatgtta
gi|19 : ctccggataggacaggtatccacatagtttatgcaaataaatttCTA--------------ATAGCTAAGCAAAGTCCATAGTGACA-G-A---AATTTGCAA-AGCATG------ATA-----ATGTCAGCT----ATTAAACTTGCCGAGAAGCAAAAATCCAAGTATA---CATGTACAATT-CAGACTAAACGATAC-ATAT--G--TCCCAaccatgctttaa
gi|2 : ATGAAGTTGAGGATACTGATT---ATGA-T--CAA---ACTG-TACATAGCAGATACATATACAAA-TTCCTCA--TT--AAACAAAAATAGATATAT-------------------A--A----------GCAAAC---A-----GTTTAA------TCATGA-AATCCTTGTAATGCTATACGGCAGA-CATGCTTA-----------------ACTTAAATTG-AAAGTGTT----------TTCC-C---ATAT-TTGCTT--------AAACTA-GAGTC---CTATACACCACT----ATGGACTGTCCTGTTTATAAAA-----TATGTGTATGAATC-ATT----C----ATGCATGCTAT-TTTCCCGCCATTTACCAAAAACATAATAAATATGGTGT-C-AAAGCT-A--TTGACTTATCAATTTGCAATTTTTTGTA--------------TTAGT----CAA-------TG-AACA-G-ATATATTCTGCAT-GGCATG------ATT-----ACATCAGCT----GTTAAAATTGCTGGGTAGCAAAAACCCAAACGCA---CAGGTA-AGTTATAAATTAAACTGGACGATAA--AGCTCTCATGTGGGACCCGGAAAATAT--GCCAA--ACCCAAAA----ATG-TTTA-ATTTTTTGCAGACTATTTTACAT----AAAG-TTTACT-AGGGTTGGAAAATTCAACTCGTCCACAATTAAGTTTAAATTGTATGCAGAATATGACATATGACATAAAATTTACAGTAatagggc
gi|21 : catttctgctgcaaataggacatgtacccatgtaaattacgccagtgattaa----GTTAAACTAGCCGAGAAGCAAAAATCCAAACACACTGCAGATA-AGTTACAAATCAATCGGGACAATA-------------TGGATCCCAGAAAATATGCGC--A--ACCCAAAAT
gi|23 : TACGGATT---AT-A-TTTCAA--TATCG-TATGTATCAAAT
gi|3 : atcagtgcttgataggccacatatacatgtaatttatgcattatatAAAGTAAGTGATATGGATT---AT-A-TTCCAAAATACTG-TATGTATTTGATAT------AAA-TTCTCCA--ATGTA--CAGAAATAAATATAG-------------------AGAA----------GCAAGC---ATA---GATTAA------TTGTCGCAATCCT-ATAATGTTCTATAGTGGAACATGCATA-----------------ACTAAAATTG-AAAGTGTG---------ACCCC-C---C-TT-TTGCTT--------ATTGTG-GAGTCGTCCTAAATGCTATTTATAATGGACTGTCCTATTTATAAAT-----TAGGTGTATTAATC-TTT----C----ATACATGCTAT-TTT-CCACTGTTTGTCAAAATCATATTAAATATGGTGTCC-AAA--CAA--TTGACT-----ACTGGTGATTTTTTCTA--------------CAAGTATAGCAAAGTCCATTGTGATA-A-A---A-TCTGCAT-GACATGGTTTAAATAAGATTATGTCAGCT----GT
gi|4 : tgatgttatttaccgcatgggagtgtaaaattccactcgtatttgtgagttgatttcactgggttgagtaaagatttgcaaatactcaaccagctgggtgagtcagtttttgctccagacaggccacgtatccacataatttacccaaagAAGATCATGATACGAATT---AT-A-TTAAAA--AACTG-TACATATCAGATACATATATAGG-TTCCCCA--AT--A--CGGAAATAAATATAA-------------------AG------------GCAAGCGTTAAA---TATAAA------CCA--AGAATCCTTATAATGTTCCACGACAAAACGAGTATA-----------------c
gi|5 : ctttttatctttatattttggtacatagtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatattttcaatatagcgaatcccaatttaacgttttaattcgatgttcatatcagggtgttaaattctactaaattttagtggggtgagtgaagatctgtaaatacccgactggctgggcgggtccgtttttacaccagatggccacgtatccgcataatttacacaaatAAGATCATGATACGGATT---AT-A-TTAAAA--AACTG-TACATATCAGATACATATATAGG-TTCCCCA--AT--A--CGAAAATAAATATAA-------------------AG------------GCAAGCGTAAAA---TATAAA------CCA--AGAATCCTTATAATGTTCCACGACAAAACG
gi|6 : tttttatctttatattttggtacatagtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatattttcaatatagcgaatcccaatttaacgttttaattcgatgttcatatcagggtgttaaattctactaaattttagtggggtgagtgaagatctgtaaatacccgactggctgggcttgtccgtttttacaccagatggccacgtatccgcataatttacacaaatATAAAGTTCATGATACGGTTT---AT-A-TTCCAA--TACTG-TACCTA------------GCAAA-TTCCCCA--AT--A--TGGAAATGAATATAGC------------------AGCA----------GTGGAA---AAATATAATTAAACTTTGTTGTCGCAATCCTTACAATGTTCTGCAGAACAACGCACATA-----------------ACT--TATAG-A------T---------A--------------TTGTCT--------A-------AATTGTTCTGTAAACTATT----ACGGGCTGTTCTA-----AAAAACATGTAGGTGAATAAATTATTT----C----ATGCATGATAT-TTTCCCACCACTTATCAAAATCATAATagta
gi|7 : gggtcgtaaaattccactcgcccactcacattcgatttcacaggggcgagtggagatttataaatactctgatgaccaggtgagtcagtttttgctctagataggccacgtattcacgtaatttacacaaTT-TTTATTTGCAGTATATTTTACTT----AAAA-TTTAATGAGGATTGGAA--------------AGGATTAAGGTTATTTTATATGCAGAATAT----T-TTACATAAAGTTTACAGTACTGTAATAA-AAACACAAAGACCAAATATTTGCATTAGACCATTG--ACATT-TAAATTG-TTTAAACAGTCAAAGAATCATGGCTTGTTGAATTAAGCTTGACCATTGCAAATGGCAAAAAA-A---
gi|7 : ---TATTGGTC-----ACTTGTCC-TACAGTGCGAGTG----GTCTAC-AAATAATATTACAGCCCTGCaggtgagtgacaatttactatgggcaactagattttattggtcacttgtcctacagtgcgagtggtctacaaataatattacagccctgcc
gi|8 : tttttatttgcagtatattttacttaaaatttaatgaggattggaaaggattaaggttattttatatgcagaatattttacataaagtttacagtactgtaataaaaacacaaagaccaaatatttgcattagaccattgacatttaaattgtttaaacagtcaaagaatcatggcttgttgaattaagcttgaccattgcaaatggcaaaaaaaaggtgagtgacaatttactatgggcaactagatttGATT---AT-A-CTCCAT--TACTG-TTTGTATCAGATACGTAC-CAAC-TTTCTTA--AT--A--TGGAAATAAATATAGTTTTTGTCTCAACAATCGTAAAAT---------GTAAA----AAA---GATTTG------TTGTCACAATCCTTAAAATGGTCTATCACAGAACACGCTTA-----------------ACTAATATTG-AAAGCTTT----------TCCC-C---C-GC-TTGCAT--------GCAGTA-GAATTGTCCAATACATTGTT----ATGGACTTTTTTATTTACAAAA-----TAGGTATATAAATC-TTT----C----ATGCATGCTGTATTCCCCATTGTCTCTCAAAATCATAAAAAATA--GC------------------ACT-----ATTTGCGATTTTTTc
gi|9 : ATA-----------------CCTAAAGTTG-AAAGCGTT---------AACCC-C---A-AT-TTACA---------ATAGTA-GAGTCATCCTATAATCTATT----ATGGACTGTTCTATTAATGAAA-----TAGGTGTATTGATC-TTTCGCAC----ATGTAGGCTTT-TTTCCTGCTGTTTGTCAAAAACATAAAAAAAATGGCAT-------------------------TTGGTGATTTCTTCTATAAAGGAACACCTGCTAGCTTTGCAAAGTCCATTGTGACA-GAA---ATTCTGCA--AACATG------ATA-----ACATCAGCT----GTTAAACTTGCTGAGACACAAAAATCTAAACACA---CA-ATA-GATTATAACTTAA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): GTGGTGTTAAATTCCACTCTGCTTGCATTTTGCAAGTTGATTTTACAGTGGGGGAGTTCAGATCTGTAAATACTAGACTGGCCAGGCAAGTCAGTTTTTGCTCCAGATAAGCCACGTATCCA
Unaligned ( gi|22 ): GGTGTAAAATTCCATGTGGGCAAGATGAATTAACTTCGGGTTGAGTGAAGACGTGTAAATACTCAACTGGCCAGGCAAGTCTGTTTTTGTA
Unaligned ( gi|24 ): AACAAGGAGTGACAATTCATCACGGGCAAACATGATTTATTGGTCACTCATCCTACA
Unaligned ( gi|25 ): AAAATAAGATCAATGTTGAATGTTTACCGATAAAAACCAT