lowQualScore : 22222222222222222222222222222222222222222222222222222222222222222 1111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111 222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 1 222 1 1 1 44444444444444444444444 111111 11111 11111111111 1111111 11 222 111111 1 444444444 222222 1 1 9999999 22 5555555555 55555555555555555555555555555555555555555555555555555555555555555 1 1 1 7777777777777 11 88888888 1 222 222 1111 7777777777777 1111111111111111 1 22 1 4 1 333 222 111 1 1 1 1 1 222 2 1 1 1 44444444444444444444444444444444444444444444444444444444444444444444444444444 55555555 5555555555 00000000000 2222 1 1 111111111111111111111111111111111111111111111111111111111111111111111111 1 1 11 1 11 2 222222222 11 1 11 1 333333 1 22222222 11 2222 1111 5555 111 111 666666666666666666666666666666666666666666666666 1111 22 222
lowQualScore : 5 1 000 2 0 2 5 5 5 5 0 2 0 66 11111111111111111111111 0 6 999999 5 22222 88888888888 7 3 2 66 3333333 66 5 222 3 111111 5 6 2 999999999 3 3 3 4 111111 0 4 7777 2 0 6 0 44 3333333 44 6 8888888888 6 00000000000000000000000000000000000000000000000000000000000000000 4 5 4 5 4 5 6666666666666 3 55 6 77777777 4 7 6 333 4 999 7 7 7 2222 3333333333333 2 3333333333333333 6 5 33 6 6 6 7 0 6 5 555 2 222 333 6 5 3 3 2 4 0 5 5 1 333 6 7 6 3 3 7 11111111111111111111111111111111111111111111111111111111111111111111111111111 6 8 7 0 1 6 00000000 2222222222 77777777777 6 3 8888 3 666 99 77777 3 666666666666666666666666666666666666666666666666666666666666666666666666 8 7 0 1 77 33 6 8 11 3 8 6 0 8 888888888 0 44 4 0 7 55 2 0 666666 5 00000000 0 8 44 0000 1 7777 3333 111 000 111111111111111111111111111111111111111111111111 7 3 2222 5 3 1 1 88 3 333 3 6 6 3
lowQualScore : . . ... . . . . . . . . . . .. ....................... . . ...... . ..... ........... . . . .. ....... .. . ... . ...... . . . ......... . . . . ...... . . .... . . . . .. ....... .. . .......... . ................................................................. . . . . . . ............. . .. . ........ . . . ... . ... . . . .... ............. . ................ . . .. . . . . . . . ... . ... ... . . . . . . . . . . ... . . . . . . ............................................................................. . . . . . . ........ .......... ........... . . .... . ... .. ..... . ........................................................................ . . . . .. .. . . .. . . . . . ......... . .. . . . .. . . ...... . ........ . . .. .... . .... .... ... ... ................................................ . . .... . . . . .. . ... . . . .
lowQualScore : 0 4 444 2 2 5 6 0 0 0 0 6 2 11 11111111111111111111111 7 7 222222 0 44444 55555555555 5 2 0 99 6666666 44 0 888 2 444444 4 0 2 000000000 0 2 5 0 999999 2 0 8888 5 0 0 0 55 0000000 00 0 3333333333 0 33333333333333333333333333333333333333333333333333333333333333333 0 5 0 0 0 5 5555555555555 0 55 0 55555555 0 0 0 333 7 333 3 3 3 3333 3333333333333 5 0000000000000000 0 0 00 0 0 0 0 0 0 0 000 5 000 000 0 0 0 0 5 0 5 0 0 5 000 0 0 7 3 3 0 77777777777777777777777777777777777777777777777777777777777777777777777777777 0 3 3 7 0 0 33333333 0000000000 22222222222 7 5 3333 3 888 22 77777 2 000000000000000000000000000000000000000000000000000000000000000000000000 0 0 4 0 44 44 0 0 00 0 0 0 0 0 000000000 8 44 0 8 0 88 0 0 555555 0 44444444 8 6 66 8888 0 0000 5555 777 000 444444444444444444444444444444444444444444444444 7 9 1111 7 8 0 0 00 8 444 2 0 0 2
consensus : TAATTTCTTGTCAGAATATGATATACGGATTTACCAATGAGCTCATTTACTACTGGCATCATAATA-TA-TT-TT-CCACANTGACTCCGTGTTTC--GA-----------------------AATAATCAATTTG-TTGTTCCTTGCAAAAT------GTANAATTCGCACTTGNGATGCC----ATTTTGAAAATAACATTGA--CT---GG--TTTATAAC-TTTT-CACGAACTTTAAGCGTATGTAAAAGACGAAAACTACGGTAGACN-TCG-TAGTGAATGACACTTACAAACACCATTCCCACATTACTACGGATTATTNAATCGGCAAAACGTCAGT-GTTCC-TTCCCGTTACTGATATG---AAACTGTTTACAACTGAAATTCTGTTACAGATTATTGGAAGTA----------ACACTTTCAGAT--------------------A------------TATTTTTTCA----------------------TCATCTTGAAAANCAATTGTATGCATANTCAAAATGAAGNACAAATGTTGNT--TNTTTTTCAATTACNGNNAATGAAAATTGC--ATTGCACTNACCGATTCAGTGATAACATCATGA---ACCAGCCANATTTGTTT--GTTACAGATTTTTTTATTGAA-GATTATC-------------AAANAGAAGGCAGATCTAAAGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTTTTGATTCTTGTTTTTAT----TGTATACCATAAACCAACACATTCATGAATGACCTATCAAACACGTGATCATAGCTGCTATGTTAGTAGCAACA-AAGTCTTCCATGTAATGTAGCTTTGACNANCATAAAATCATATGAAACAAAATATTTGAAANANGGATGCAATTTANTTNATAATAAACCAAACAGCNTGTGGTNGATAGANAGGAAGAAAGAAACGAANAAACNNCATAGTATAACACGGGTTGCCTCCCTTCTACTTTTGAG-ACGACCCCCA-TATAATGTGTTTCTGAC-----CAAA-TCGN-TGAAC--TGCAA-----ACAANCGAACAA----------GTGGTGT-T-AA--A--A-----TCTAATATTTTGTATGTATTTCGTCGTTATAGATAATACTTTAAATGTG-------GCAGGCGTACTAGAAGTT-TGAT-TT-ATAGCACATGTATAAAAAAG--AA-GA--ACACAT-TCGTATAATAGCGTAA----ACGTCAATA-A-A-A--A-TG-ACTGATTTTCACGAACGACG-------AA-------------------AGAGGAAACAAGA-ACATTTAC-----CTTTG-CGCG------AGTTCAAA-TCGATATTTTGAATAAACAAAGCAAGTATACTACC-TTT-T-AAAG--TATTCCA-GCCTTTCTTTTA-T---TA----ATATAAATAATTCCGAATCGAACGTCAATCTGAAATCGTGATATTGA-GACC-ACAGTTTCAATTTTTCCCTGC---ATTTTACCAAAANAAATGGCGGC-A-AAATAT----ATT-ATCGTCG---CTTGGGACGCTG---AA-------G-G----G--------ACTATT--T--A--C-CGT-TGTTGTACTAATGCGCAGTAGT----CGTCTGCATTTCA-TGTCATTTTAGTNGAAATTGTACGCTTTGACTACCGCATATTTGAAGTGTTTTT
Reference ( gi|1 ) : TAATGTCTTGTCAGAAAATGATATACGGATTTACCAATGAGCTCATTTACTAATGGCATCATAATA-TA-TT-TT-CCACATTGACTCCGTGTTTC--GA-----------------------AATAATCAATTTG-TTGTTCCTTGCAAAAT------GTAGAATTAGCGCTTGCGACGCC----ATTCTGAAAATAACATTGA--CT---GT--TTTATAAC-TTTT-CACAAACTTTAACCCTATGTAAAAGACGAAAAAT-CAATA-ACCTTCGGTAGTGAATGACACTTACAAACACTATTCCCACATCAATACAGATTATTAAGTTGGCAAAACGTCAGT-GTCCC-TCCCCGTTACTGAAAAAGACAAACTGTTTACACATGAAATTCTGTTACAGATTATTAGAAGTA----------ACACTTTTAGAT--------------------A------------TACTTTTTCA----------------------TCATCTTAAAAATCAATTGTATGCATATTCAAACTGAAGAACAAA-ATTAATAATATATTTCAATTACAGATAACGAAAATTGTAAATTGAACTTACTGATTCAATGTTAACACCATAA---ACCAGCCATATTTGTTTTGGTTACAGATTTTTTTATTGAATGATTATC-------------AAACAAAAAACAGATCTAAAGACTGTGTGTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTTTTGATTCTT--TTTTATCTTTTGC-TATCATAAACCAACACATTCAGGAATGACCTATCAAACACAAGATCATAGTTGTTATGTCAGTTGCAACACAAGTCTTCCATATAATGTCGCT---ACCAACATAAAATCATATAAAACAAAATATTTGAAAAACAGGTGCAATTTATTTTATAATAAACCAAACAACCTGTGGTTGATAGACAGACAGAAAGCAACGAATAAAAAACATAGTATAGCACGGGTTGCCTCCATTCTA-TTTTGAG-ACGACCCCCA-TATAATGAGTTTCTGAC-----CAAAATCGCGTGAAC--TTCAACTTTCACCACCGAAAAA----------GT--TGT-TCAA--A--A-----TCTGATATTTTGTATGTTTTTCGTCGTTATAAATAATACTTTAGATGTT-------GCAGGCATACTAGAAGTTTTGATATTTATAGCACATGTATAAAAAAACGAAAAACAACACAT-TCGTATAATAGCGTAA----ACGTCAATA-A-A-A--A-TG-GCTGATTTTCACGAACGACG-------AA-------------------GG-------------------C-----TTTTG-CGCT------AGTTCAAA-TCGATTTTTTAAATAAACAAAGCAAGTATGCTACA-TTT-T-AAAG--TATTTCA-GTCTTTCGTTTA-T---TA----ATATAAATAATTTTGAATCGAACGTCAATCTGATATAGTGGTATTGA-AACCGACA-TTTCCATTTTTCTTTAC---ATTTTACCAAAATAAATGGTGGC-A-AAATAT----AT--A-CATCG---CTTGGGACGCTG---AA-------G-G----G--------ACTATT--T--A--C-CGT-TGCTATATTAATGCGCAATAGT----CGTCTGCATTTCA-TGTCATTTTAGACGAAATTGTATTTTTTGACTATCGTATATTTGAAGTGTTTTT
gi|9 : TAATTTCTTGTCAGAATATGAT-CGCAGATTTACCAATGAGCTCATTTACTACTGGTATCATAATA-TG-TT-TTTCCACAACGATTTCGTGTTTT--GA-----------------------AATAAACAATTTG-TTGTTCCTTGCAAAAT------GTAGAATTTGCACTTGGGATACC----AATTTGAAAATAACATTGA--CT---GG--TTTATAAC-TTTT-CACAAACTTTAAGCATATGT-AAAGACGAAAAAT-CAATA------------------ACACT----------ATTCCCACAATATAACAGATTATTTAAACAGCAAAACGGCAGT-ATTCC-TTCCCGTTACTGATATG---AAACTGTTTACAACTGAAATTCTGTTACAGATTATTGGAAGTAATCATAAGTGATACTTTCAGATCATTATTGTTTTATTTCGGCA------------TATTCTTTCA----------------------TCATCTTGAAAATCAATTGTATGCATATTCAAAATGAAGTACAAATGTTGTT--TTTTTTTCAATTACCGGTA
gi|3 : tTAATTTCCTGTCACAATATGATATACAGATTTACCAATGAACTAATTTACCACTTGCATTATAATA-TA-TT-TTTCCACACTGACACCATGTTCC--AAGATATGATTTTGATTATTTCCATAATAATCAATTTG-TTGTTCCTTGCAACAT------GTATATTTAGCACTTGTGATGCC----ATTTTGAAAATAACATTGA--CT---GG--TTTATAACTTTTT-CACAAACTTTAAcacag
gi|17 : aaaaccttaataattaaaatgacacttagtgaaggacacttacaaaccttaataattaaaatcaaaggcctaaatggcctgagggaaggccattaatattaggatttgggaaattgacagtatagcatcaaagcagtacagttcactttaaatgatcagtggttttgacggctaaaaaatgtcactatttaagacagtgaatataaaacatgctgcatcagcatcatcttcaccataaaatattaactgaccatgatcatactcaaacaaattgaacagaatgaaaaaatagcaataaaacttgatgacaaaccaatgaaaacaattaatgtcaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacttTAGTTTCTTATCAGAATATGATGTAAGGATTAACCAATGAGCTCATTTACTACTGGCATCATAATA-TA-TTATT-CCACAATGACCC--TGTTTC--AA-----------------------AATAATCAATTTG-TTATTCCTTGCAAAAT------GTAGAATTCGCACTTAAGACCCCATGGATTTTG---------TTGA--CC---GT--CTTACAG-------CACAAAacat
gi|24 : tcacttgcagttttgactatcatgtcgtttttcttTAATTTCTTGTCAGATT-TGATATACAGATTTACCAATGTGCTCATTTACTACTGTCATCAGAATA-CATTT-TT-CCACATTGACTCTGTGTTTC--GA-----------------------AATAAACGATTgagcatatattggaggatgacttccaatgtcctgggttgacagacatcaccggcg
gi|10 : gggtaaatatgttatttatttttggagatattgtgttgtgtcgtctttcttTAATTTCTTGTCAGAATATGATATACG-ATTGACCAATAAGCTCATTTACTACTGGCAGTATGATA-TA-TTCTT-CCACATTGACTCCGTATTTT--GA-----------------------GATA
gi|8 : aaaatcaaaggcctgatgtttctgagggaagtccgactacctgaagaaattcatcaatattaggatttgggaaactaaaaaaacgtgttcaattgagttacagtacaacatcaaagcaatacagtgtcactttgacgactatatacatttaactatttaagacagtgaatataaaacatactgcataaacaaccccattagcatgaataaaatatttgccgactacgaccatacccaaacaatttgaccagaatgaaagaaatagcaatacagaatgacaacgaacaatggaaatcagttaatgtatattgcccatcacgtctttcttTAATTTTTTGTCA-----TAATATAC--------CAGTGAGCTCATTTACTATTT---TTATAATAATT-TT-TT-CCACATTGACTCCGTGTTTC--GA-----------------------AGTcgt
gi|4 : atcgtgacatatcagcctctttggaacacaacaaacatgacatacttttccttctaatagatattggtgatgtctattttagataaggttttttgttgatggtgtaaaataaatgagtactgaccaatttataggattacagtactgatcattgcttaagactactaaatagatttaactatttagacagtaaataatatcaaacatgctgcataaataacatcatgcaaatcttcagcataaaatattaacaaattatgatatacccaagcaaattgactagaatggaaaaaatagcaataaaacttgacgactaaccatggaaattagtcattgtctgatcattcacagttttgcccatcatgtcttggtcttttttAATTTCTTGTCAGATTATGATATAAGGATTTACCAATGAGCACATTTACTAATG-----ATATTA-TA-TT-TT-CCACAATGACTCTGTGTTTCTGGA-----------------------TATGAT---TTTGATTATTTC---CGAAATAATCAAGTTCCATTCACACTTGTGTTGCC----ATTTTGAAAATAACAGTGA--CT---GG--TTTATAATATTTT-CATGAACTTTAATTATTTGTAAAATGTGAAAACT--GATA-ACCgt
gi|22 : tgacagtattctagtcaatggagtaaaataatggggtactggtcctgaccaatttgtaggagtatttattcaattgagtcacagtataacatcgaagcagctgtcagaccacagcagaacagtgtcactttaattagtggttttgatgactaaataaatcaaactatttaagagtgattataattttttttgcataaacaacatccttttaattttcagcataaaatatcagccctggactataaccatacccaacgaattgaccagaatgaaaaaaaatagcaataaagcttgacgactaaccagggtaattaagttaatgtcttatcatttacagttttgcccattatatcgtcttccttaTTGTCAAACTATGACATACGGATTTACTAATGAACTCATTTACTATAAGCATCATAATA-TA-TTATT-CCACATTGGCTCCGTGTTTC--GA-----------------------AGTAATCAAT----TTGTTCCTTGCAAAAT------GTATAAT------TTGC-------------------ATA-----GA--CT---GG--TTTGTATA-TTCT-AACAAACTTTAAGCATATGTAACAGag
gi|26 : TTCC--AA-----------------------AATAGTAAATTTT-TTGTTCCTTGCAATAT------
gi|19 : tttccatattgcttcaagataggattttgattatC----ATTTTGAAAATAACATTGA--CTACCGTAGTCTATAACTTTTT-CATGAACTTTAAATGTATATCAACAATGAAAAAT-CGTTA-ATCtttctggtttataacttttacacaaactttaagcataagtca
gi|20 : tAAATAGCCTTGAAACC---AT--TTTATTAC-TATC-TATCTACTGT---TCTAT--------CAAAAACTACAGTAGACATTCA-TAGTGAATGACACTTACTAACACCATTCCCACATTACTAGAGGTTATTTAATCAACAAAGCAT-ATTGGTTTC-TCCCTGTTATTGATATA---AAACTGTTTACAACTGAAATTCGGTTCGAGGTTATcaccaagaccgtttttgtacattttacaattgtttactttttgttaattgttgcagtcagtcatctggaaagtaaacattgaaatttaaagcttcagtatgcctagaaatcaatattattgcatacatagag
gi|26 : AATATTTT--CT---GG--TTTATAAC-TTTTACACAAACTTTAA
gi|21 : tttccatattgcttcaagataggattttgattatttccaaaatagtaaattttttgttccttgcCGAAAACCACAGTAGACAATTGGTAGTGAATGACACTTACAAACACTATTCCTA-----ATATGGATTATTAAATCAGCAAAACATCAGT-GTTCTATTTCCGTTACTCACATG---AAACTGCTTACAAATGAAGTCCTGTTACAGATGATTGGAAGGA----------ACACTTTCAGAT--------------------A----------------TTTTCA----------------------gcataagtca
gi|3 : TAGTGAAGGACACTTACAAACgataggatcctta
gi|2 : aaaaccttaataattaaaatgacactATTACTACGGATCAATAAATTGGCAAAACGTCAGT-GTTCC-TAACCGTTACTGATATA---AAACTGTTTACAACTGATATTATGTAACATATTATTGGAGGTA----------ACACCTTCAGAT--------------------ATTTTCGGATCATTATTTTTTCATTTATGCCTATAGATTATTTTATTATCTTAAAAAAC-ATTGTATGCATAATCAAAATGAAGAAC-AA-ATT-AT--TATTTTTCAATTACAGTAAATGAAAATTGC-------ACTTACTGATTCAGTGATAACATCATGA---ACCAGCCACATTTGTTT--GTTACAGA-TTTTTTATTGAATGACTATCGAAAAAAAGAACGAAAAAAAAGACAGATCTAAAGACcttaataattaaaatcaaaggcctaaatggcctgagggaaggccattaatattaggatttgggaaattgacagtatagcatcaaagcagtacagttcactttaaatgatcagtggttttgacggctaaaaaatgtcactatttaagacagtgaatataaaacatgctgcatcagcatcatcttcaccataaaatattaactgaccatgatcatactcaaacaaattgaacagaatgaaaaaatagcaataaaacttgatgacaaaccaatgaaaacaattaatgtcaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnactttaatttcctgtcacaatatgatatacagatttaccaatgaactaatttaccacttgcattataatatatttttccacactgacaccatgttccaagatatgattttgattatttccataataatcaatttgttgttccttgcaacatgtatatttagcacttgtgatgccattttgaaaataacattgactggtttataactttttcacaaactttaaacat
gi|29 : cttggaaannnnnnnnnnATTGCACTAACCGATTCAATGATAACATCATAATTAACCAGCCATATTTGTT--GGTTATAGATTTTTTTATTGAAAGATTATC-------------agataaaaatatgtatttttttaattcaaatatggttattttctaatttttagttgacgatgacacagctgtatacagttttgattcttgtttttattgtataccataaaccaacacattcatgaatgacctatcaaacacgtgatcatagctgctatgttagtagcaacaaagtcttccatgtaatgtagctacgaacataaaatcatatgaaacaaaatatttgaaagatggatgcaatttattttataataaaccaaacaacatgtggttgatagataggaagaaagaaacgaaaaaactatatagtataacacgggttgcctc
gi|13 : A---ACGATCCAAATTTGATTTTGTTGC-GATTTTT--GTT------TTATC-------------AAACAGAAAGCAAA
gi|2 : taattttgatttttccctgcattttgccaaaacaaatggtggctatattaatcatcgctagggacgctggagtggactattttactaatgcgcagtagttagtcgtctgcatttcatgtcattttagtaaaaattgcacgctttgactaccgcatattttaagtgctCAGTTTTGATTCTTGTTTTTAT----TGTATACCATAAACCAACACATTCATGAATGACCTATCAAACACGTGATCATAGCTGCTATGTTAGTAGCAACA-AAGTCTTCCATGTAATGTAGCT---ACGAACATAAAATCATATGAAACAAAATATTTGAAAGATGGATGCAATTTATTTTATAATAAACCAAACAACATGTGGTTGATAGATAGGAAGAAAGAAACGAAAAAACTATATAGTATAACACGGGTTGCCTCacatcctgtgctatggcaattgcattttaaaatgtttggaactattttatctgtcagaggaaatgaaatcgccatcatcagtataacaaa
gi|5 : cttggaaannnnnnnnnnattactacggatcaataaattggcaaaacgtcagtgttcctaaccgttactgatataaaactgtttacaactgatattatgtaacatattattggaggtaacaccttcagatattttcggatcattattttttcatttatgcctatagattattttattatcttaaaaaacattgtatgcataatcaaaatgaagaacaaattattatttttcaattacagtaaatgaaaattgcacttactgattcagtgataacatcatgaaccagccacatttgtttgttacagattttttattgaatgactatcgaaaaaaagaacgaaaaaaaagacagatctaaagacagataaaaatatgtatttttttaattcaaatatggttattttctaatttttagttgacgatgacacagctgtataTAATGTAGTTTTGACCAT--TAAAATCATATAAAACAAAATATTTGAAATAAAGAT-CAATTTAGTTGATAATAAATCAAACAGCCTATGGTAGATAGAGAGAAAGAAAGAAACGAACAAACATCATAGAATAACACAGGTTGCCTCAATTATACTTTTGAA-ACGACCCCCA-TATAATGTGTTTCTGAC-----C-AAATTGGTTGAACAATGCAAA---AAAAAACAAGCAA----------GTGGTGT-T--A--A--ATTTTTTTTAGTCTTTTGAATGTATTTCGTCATTATAAATAATACTTTAAATGTG-------ACAGGCATACTAGAAGTTCTGAT-TTGAAAGCACATATATAAAAAAA--AA-------ACAT-TTGTAAAACAGCGTAA----ATGTAAAAA-A-ATA--A-AG-ACCGATTTTCACAAATGGCGAAAGAGAAA-------------------AG-------------------CACAAATGTTGACGGTAGTGTGAGTTCAAA-TCAATATTTTGAATAAACATAGCAAGTGTATTACCTTTT-T-AAAG--TATTCCA-ACCTTAC-TTTAGT---TT----ATATAAATAATTCTGAATCAAACATTA--TTGAAATTGTCATATTGA-GACCATAA-TCTCAATTTTTC---ACAGTATTTTA
gi|6 : gTAGTATAACACGTGTTGCCTCCCTTCTA-CTTTTAGTACGACCCCCAATATAATGTGTTTCTAACGACTTCAA---CAC---AAC--TGCAA-----ACAATCGAACAA----------GT--TGTGTTAA--ACAA-----TCTAATATATTGTATGTATTTCGTCATTATAGATAATAATTTAAATGTTAAATGTGGCTGGCGTACTAGAAGT----------ATAGCACATGTATAAAAAA-----------CACATATGGTA-AATGGCGTAA----ACGTCAATAGA-A-A--A-TT-ACTTATTTTCA-GAATGATA-------AA-------------------AGAGGAAACAAGATACATTTAC-----CTTTG-CGCG------AATTCAAA-TCGATATTTTTAATAAACAAAGCAAGTACACTACC-TTT-TTAAAG--TATTCCA-GCATTTCTTTTA-T----A----ATATAAA--------------ATGTCAATCTGAAATCGTGGTTTTGATAAC--ACAGTTTCAATTTTCCCCTGC---ATTTTACCAAAAT-AATGGCGGC-GTTATTATTCTAAT----CGTCG---CTTGGGCCGCTG---AAGGAGGTGG-G----G--------TCTATTTCT--A--C-CGT-TGTCATAGTAATGCGCAGTAGT----CGTCTGCATTTCA-TACTTTTTTATTTGAAACTGTATGCTTTGA
gi|7 : GTTGCATCCCTTCTACTTTTGAG-ACGACCCCCA-TAAAATGTGTTTCTGAG-----CAAA-TTGTGTGAAA--TTCAACTTTCACCACCGAAAAATATTGAACAAGTGGTGT-TAAACAA--A-----TCTAATATTGTGTATGTTTT-CGTCGTTATAGTTACGACTTTAAATGTG-------GCAGGCATACTAGAAATTATGAT-TTTATAGCAAAAGTATTAAAAAG-GAAAGAT--CACAT-TCGTATAAAAGCTTAGTTTTACG--AACA-ACG-A--A-TGAGGTAA---GCACAAACATT-----------------------------GC-------------------C-----CTTTG-CGCG------AGTTCAAC-TCGATATTTTGAATAAACGAAGTAGTTATACTA-A-CTT-T-AAAAATTATTCCA-GCCTTTCTTTTA-TAAGTACGAGGTATAATTAATTCCGGATCGAACGTCAATCTt
gi|32 : aAAAAACACAT-TCTTATAATAGCGTAA----ACGTCAATA-A-A-AACA-TG-GCTGATctaatgagaccacaatttgatttatttcctgcatctcttgggatgctggaaagggggatatttgtacatatgttatactaattcgcagtagtcatctgcaattcatg
gi|15 : cACACAT-TCATATAATAGCGTAATTAAACATCAATAGA-A-A--A-TG-ATTGATTTTCA-GAATGACG-------AA-------------------AGAGGAAACAAGAAACATTTAC-----CTTTG-CGCA------AGTTCAAAATCGATATTTTGAATAAACAAAGCAATTACATTACC-TTTAT-AAAG--TATTCAA-GCCTTTCTTTTA-T---TA----ATATAAATAATTCCGAATCGAACATCAATCTGAAATCATGATATTGA-GACC-ACAGTTTCAATTTTTCCCTGC---ATTTT
gi|25 : ATAT-TTGTATAATAGCGTAA----ATTTCAATA-A-A-A--ATTT-ACTGATTTTCATGACCGACG-------AAAGAGGTTAGCACAAACAATGG-------------------C-----CTAAG-CATA------AGTTCAAA-TCAATATTTTTAATAAACACAGCAAGTATAATACA-TTTCT-AAAG--Tggtggccttaatatgtttaaagggtaattaaaatgctatataattt
gi|16 : TTCAAGCCTTT--TTTA-T---TA----ATATAAATAATTGCGTATCGAACGTCAATCTGAAATCCTGATATTGA-AATC-ACAATTTAAGTTTTTTTCTGC---A----------AGAAAGGCTGCC-A-AAATAT----AT--T-TATCGGCGCTTGGGACGCTG---AA-------G-T----G--------ACTATT--T--TTTC-CAT-CGCTTTCCTAATACACAGTGGA----CGTCTGCATTTCA-TGTCACTTAAGTATAAATTGTATGCTTTGAC-ACTGCATATTTGAAGTGTTTTT
gi|13 : A-TTTTGATTTTTCCCTGC---ATTTTGCCAAAACAAATGGTGGC------TAT----ATTAATCATCG---CTAGGGACGCTG---GA-------GTG----G--------ACTATT--T----------------TACTAATGCGCAGTAGTTAGTCGTCTGCATTTCA-TGTCATTTTAGTAAAAATTGCACGCTTTGACTACCGCATATTTTAAGTGCTTTTctctctgtttgatagaacaaaaatcgcaata
gi|14 : taTTT-CCAAAA-ATATAGCGGCCA-AAATAT----ATTTATCGTCG---CTTGCGACGCTG---AAGT-----G-G----G--------A----------A--C-C------------AATGCCCAGTAGC----CGTCAGCATTTCAGTG-----------GAAATTG-----------TACCGCATATTTGAAGTGTTTTgctttctgtttgataaaacaaaaatcgcaacaaaatcaaatttggatcgttacatcctgtgctatggcaattgcattttaaaatgtttggaactattttatctgtcagaggaaatgaaatcgccatcatcagtataacaaa
gi|12 : AAAAAAAATAGTTCC-A-AAATAT----ATTTATCATCA---CTTGGGACGCTG---AA-------G-GAGGGG--------ATTATT--TTTA--C-CGT-TGTTGTATAAATGTGCAATAGT----CGTTTGAATTTCA-TGTCATTTTAGTTGAAAATGTAGGTTTTGACTACCACATATTTGA--TGTTTTTgctctccgaaagaacgaaaacaaacaatataatctgctatagcgttttgaaacttttggaactattttattggttggaggaaatgaaatcaccgtcaacagtataacaaaggttatagaacaaaagtgtaaatgggccgcacgatcactatagaaggctacgttcgccttccaagtatata
gi|7 : T--G-CATCT---CTTGGGATGCTGGAAAG-------G-G----G--------GATATT--T--G--TACATATGTTATACTAATTCGCAGTAGT----CATCTGCAATTCA-TGtacaaaaatcacaatacaaatttggattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgctgtcaacagtataacaaaattatagaacaaaattatatttcggtctgtgccatccctatagaaggtatcgctactcacctaccaataaatgact
gi|31 : agttgcatcccttctacttttgagacgacccccataaaatgtgtttctgagcaaattgtgtgaaattcaactttcaccaccgaaaaatattgaacaagtggtgttaaacaaatctaatattgtgtatgttttcgtcgttatagttacgactttaaatgtggcaggcatactagaaattatgattttatagcaaaagtattaaaaaggaaagatcacattcgtataaaagcttagttttacgaacaacgaatgaggtaagcacaaacattgccctttgcgcgagttcaactcgatattttgaataaacgaagtagttatactaactttaaaaattattccagcctttcttttataagtacgaggtataattaattccggatcgaacgtcaatctctaatgagaccacaatttgatttatttccTTGGGCCACTG---AA-------G-G----GTGGGGTGAACTATT--TTTA--T-CGT-TGTTGTAGTAATGTGCCGTAGT----CCTATGCATTTCA-TG
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): AAAACTAAAAAATGAAATGAAAATAAACGAGGTAACTTAAATAAAACAAAAATCATAGTCCTGAATGACCTGAGGGATGGCTTTGCTACTTGGACAAATTCACTAATAATAGGATTTGAGCAATTGAAAAACTTGTTCGACTGAGCTACTGTACTGTGTAACTCAAAGTAGAACTGTCAACAGTGTCACTTTGATCAATGGTTTTGACGACTAAATAATTTTAGCTATCTAAGACAGTGAGTATAAAACATGCTGCATAAACAACACCTCAGCATAAAATATTAGCAGACTATGACCGTAACCAAACAAATTGACCAGAATAGAAGAAATAGCCATAAAGCTTGATGATGAACCATGGAAATCA
Unaligned ( gi|18 ): GACAGCACTCTAGATAAAGTTAAAGGCAATGTAGTAAGGAGTATTCAATTCAGTTACTGTACGCTGGCCAAAGCAGTACAGTGTCATTTTGATGACTAAATAAATTCTACTATTTAGACAATGATTATAAAATTTTAATTATAAAACATGCTGTAAAAAACAACACCCTTTTAAGTTTAGTTGGCTATGACCATACACAAACAAATTGACTAGAATGAAAATAGTAACAATA
Unaligned ( gi|23 ): CTTCAAATAATCAGTTGTTTTGACGACTAAATAAATTTATGTAACTATTTAAGACAATGAATATAAAACATGCTGTATAAACATTTTCAGCATAAAATATTAGCCGACTATGACCATACCTAAACAAAGTGATGACAAACCATGAAATCAGTTAATGTCTAATTG
Unaligned ( gi|27 ): GCACTTCAGAACCCGGTGGATTTTGCTGATCGTATTGCAGCACAAAGAGAATATATTTGAGGACGACTTCCGATGTCCTGGGTTGACAGAAACATCACCAGCG
Unaligned ( gi|28 ): CACGAAACCGACGAACGATAGATAAGTCACAATACATCATGACATAAGTCTCTTAGGAACACAACAAACACGACATACTTTTAACTTCT
Unaligned ( gi|30 ): ACAGTATAACAAAGATTACAGAGCAAAATTAAACCTCTGACAATGGCTATAGAACGCGTCGCTCCAGTCGCCTTCCAAAAA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 33333333333333333333333 1 222222 11111 1 3333333333333333333 111 4444444444 22222222222222222222222222222222222222222222222222222222222222222 444444444 2222222 111 11 11 2 4444444444444 1 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 11 4444 1 2 333 1 1 22222 1 11 11 55555 4444444444 5555 3333333 3333333333333 5555555555555 1111 1 11111111111111 111 222222222 11 333 444444444444444444444444444444444444444 1111
lowQualScore : 0 3 4 8 3 4 1 55 77777777777777777777777 66 2 1 5 222222 6 4 6 55 0 5 44444 7 5 1 1 5 5 9999999999999999999 1 2 2 1 3 1 8 8 2 444 3333333333 00000000000000000000000000000000000000000000000000000000000000000 2 1 66 1 1 111111111 1 1 22 1111111 3 2 1 2 8 444 1 11 11 0 0 66 8 4 4444444444444 1 2 0 0 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 88 2222 5 3 4 4 0 777 1 77 0 1 11 6 1 1 0 1 1 1 0 1 22 2 2 0 0 0 55555 0 33 2 33 00000 3 1 3333333333 2 2 2222 9 2222222 2 9999999999999 2222222222222 5 1 2222 1 8888 66 9 66666666666666 88 6 1 6 555 6 000000000 1 1 5 6 6 3 5 5 7 55 111 6 777777777777777777777777777777777777777 0 5 0 5 0 0000 1 1 6 0 0
lowQualScore : . . . . . . . .. ....................... .. . . . ...... . . . .. . . ..... . . . . . . ................... . . . . . . . . . ... .......... ................................................................. . . .. . . ......... . . .. ....... . . . . . ... . .. .. . . .. . . ............. . . . . ................................................................................................ .. .... . . . . . ... . .. . . .. . . . . . . . . . .. . . . . . ..... . .. . .. ..... . . .......... . . .... . ....... . ............. ............. . . .... . .... .. . .............. .. . . . ... . ......... . . . . . . . . . .. ... . ....................................... . . . . . .... . . . . .
lowQualScore : 8 9 4 9 3 4 0 55 00000000000000000000000 11 5 4 0 111111 6 0 6 33 2 0 33333 1 7 4 7 0 6 8888888888888888888 0 0 5 0 2 0 0 0 2 000 8888888888 44444444444444444444444444444444444444444444444444444444444444444 0 0 55 0 0 000000000 0 0 00 1111111 2 5 0 0 0 000 0 00 00 8 8 44 0 0 0000000000000 0 0 5 2 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 00 5555 5 0 0 0 0 333 0 77 7 0 77 7 0 0 7 0 0 0 7 0 00 5 5 2 0 0 00000 0 88 5 88 00000 0 0 8888888888 5 5 5555 8 5555555 0 2222222222222 2222222222222 7 7 1111 4 0000 44 3 00000000000000 55 7 0 7 333 7 333333333 0 8 2 7 3 0 7 7 5 00 777 7 444444444444444444444444444444444444444 2 0 8 4 2 6666 0 7 3 8 8
consensus : TAATTTCTTGTCAGAATATGATATACGGATTTACCAATGAGCTCATTTACTACTGGCATCATAATA-TA-TT-TT-CCACATTGACTCCGTGTTTC--GA-----------------------AATA--ATCAATTTG-TTGTTCCTTGCAAAAT------GTANAATTCGCACTTGNGACGCCATTTTGAAAATAACATTGAC-----TGGTTTATAAC-TTTT-CACGAACTTTAAGCATATGTAAAAGACGAAAACTACAGTAGACA--T-C-GTAGTGAATGACACTTACAAACACTATTCCCACATTANTACGGATTATTAAATCGGCAAAACGTCAGT-GTTCC-TCCCCGTTACTGATATA---AAACTGTTTACAACTGAAATTCTGTTACAGATTATTGGAAGTA----------ACACTTTCAGAT--------------------A------------TATTTTTTCA----------------------TCATCTTAAAAANCAATTGTATGCATANTCAAAATGAAGAACAAATGTTGAT--TATTTTTCAATTACAGNNAACGAAAATTGC--ATTGCACTTACTGATTCAGTGATAACATCATG-A---ACCAGCCACATTTG--TTT--GTTACAGATTTTTTTATTG-AATGATTATC-------------AAANAAAAGACAGATCTAAAGACNGNGNGNACAGATCTAAAGACAGATAAAAATATGTATTTTTTTAATTCAAATATGGTTATTTTCTAATTTTTAGTTGACGATGACACAGCTGTATACAGTTTTGATTCTTGTTTTTATCTTTTGCATACCATAAACCAACACATTCANGAATGACCTATCAAACACGNGATCATAGCTGCTATGTCAGTNGCAACACAAGTCTTCCATGTAATGTAGCT---ACCAACATAAAATCATATAAAACAAAATATTTGAAANACGGATGCAATTTATTTTATAATAAACCAAACAACCTGTGGTTGATAGANAGAAAGAAAGAAACGAANAAACAACATAGTATAACACGGGTTGCCTCCNTTCTACTTTTGAGACGACCCCCA-TATAATGTGTTTCTGACC-AAATC-G-N-CG-AAC--TNC--AACTTTCACNACCGAA----------CAAGTNGTGTTAAACA--ATCTAATATTTTGTATGTATTTCGTCGTTATAGATAATACTTTAAATGT-------GGCAGGCATACTAGAAG-TT-TG--ATTT-ATAGCACATGTATAAAAAA--G--AAA---AACACAT-TCGTATAATAGCGTAA----ACGTCAATA-AA-A--ATG-ACTGATTTTCACGAACGACGAAAGAGG-A-AA-CACGA-A-CATTGACCTTTGCGCGAGTTCAAA-TCGATATTTTGAATAAACAAAGCAAGTATACTACC-TTT-T-AAAG-TATTCCAGCCTTTCTTTTAT---TA----ATATAAATAATTCCGAATCGAACGTCAATCTGAAATCGTGATATTGAGACC-ACAATTTCGATTT-TTCCCTGCATTTTACCAAAANAAATGGCGGC-AAAATATATTT--A-TCGTCGCTTGGGACGCTGAA-------G-G----G--------ACTATT--T--A--C-CGT-TGTTATACTAATGCGCAGTAGT----CGTCTGCATTTCATGTCATTTTAGTNGAAATTGTATGCTTTGACTACCGCATATTTGAAGTGTTTTT
Reference ( family-550 ) : TAATTTCTTGTCAGAATATGATATACGGATTTACCAATGAGCTCATTTACTACTGGCATCATAATA-TA-TT-TT-CCACANTGACTCCGTGTTTC--GA-----------------------AATA--ATCAATTTG-TTGTTCCTTGCAAAAT------GTANAATTCGCACTTGNGATGCCATTTTGAAAATAACATTGAC-----TGGTTTATAAC-TTTT-CACGAACTTTAAGCGTATGTAAAAGACGAAAACTACGGTAGACN--T-C-GTAGTGAATGACACTTACAAACACCATTCCCACATTACTACGGATTATTNAATCGGCAAAACGTCAGT-GTTCC-TTCCCGTTACTGATATG---AAACTGTTTACAACTGAAATTCTGTTACAGATTATTGGAAGTA----------ACACTTTCAGAT--------------------A------------TATTTTTTCA----------------------TCATCTTGAAAANCAATTGTATGCATANTCAAAATGAAGNACAAATGTTGNT--TNTTTTTCAATTACNGNNAATGAAAATTGC--ATTGCACTNACCGATTCAGTGATAACATCATG-A---ACCAGCCANATTTG--TTT--GTTACAGATTTTTTTATTG-AA-GATTATC-------------AAANAGAAGGCAGATCTAAAGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTTTTGATTCTTGTTTTTA----TTGTATACCATAAACCAACACATTCATGAATGACCTATCAAACACGTGATCATAGCTGCTATGTTAGTAGCAACA-AAGTCTTCCATGTAATGTAGCTTTGACNANCATAAAATCATATGAAACAAAATATTTGAAANANGGATGCAATTTANTTNATAATAAACCAAACAGCNTGTGGTNGATAGANAGGAAGAAAGAAACGAANAAACNNCATAGTATAACACGGGTTGCCTCCCTTCTACTTTTGAGACGACCCCCA-TATAATGTGTTTCTGACC-AAATC-G-N-TG-AAC--TGC--AA-----ACAANCGAA----------CAAGTGGTGTTAAA----ATCTAATATTTTGTATGTATTTCGTCGTTATAGATAATACTTTAAATGT-------GGCAGGCGTACTAGAAG-TT-TG--ATTT-ATAGCACATGTATAAAAAA--G--AAG---AACACAT-TCGTATAATAGCGTAA----ACGTCAATA-AA-A--ATG-ACTGATTTTCACGAACGACGAAAGAGG-A-AA-CAAGA-A-CATTTACCTTTGCGCGAGTTCAAA-TCGATATTTTGAATAAACAAAGCAAGTATACTACC-TTT-T-AAAG-TATTCCAGCCTTTCTTTTAT---TA----ATATAAATAATTCCGAATCGAACGTCAATCTGAAATCGTGATATTGAGACC-ACAGTTTCAATTT-TTCCCTGCATTTTACCAAAANAAATGGCGGC-AAAATATATT---A-TCGTCGCTTGGGACGCTGAA-------G-G----G--------ACTATT--T--A--C-CGT-TGTTGTACTAATGCGCAGTAGT----CGTCTGCATTTCATGTCATTTTAGTNGAAATTGTACGCTTTGACTACCGCATATTTGAAGTGTTTTT
gi|1 : TAATGTCTTGTCAGAAAATGATATACGGATTTACCAATGAGCTCATTTACTAATGGCATCATAATA-TA-TT-TT-CCACATTGACTCCGTGTTTC--GA-----------------------AATA--ATCAATTTG-TTGTTCCTTGCAAAAT------GTAGAATTAGCGCTTGCGACGCCATTCTGAAAATAACATTGAC-----TGTTTTATAAC-TTTT-CACAAACTTTAACCCTATGTAAAAGACGAAAAAT-CAATAACCT--T-CGGTAGTGAATGACACTTACAAACACTATTCCCACATCAATACAGATTATTAAGTTGGCAAAACGTCAGT-GTCCC-TCCCCGTTACTGAAAAAGACAAACTGTTTACACATGAAATTCTGTTACAGATTATTAGAAGTA----------ACACTTTTAGAT--------------------A------------TACTTTTTCA----------------------TCATCTTAAAAATCAATTGTATGCATATTCAAACTGAAGAACAAA-ATTAATAATATATTTCAATTACAGATAACGAAAATTGTAAATTGAACTTACTGATTCAATGTTAACACCATA-A---ACCAGCCATATTTG--TTTTGGTTACAGATTTTTTTATTG-AATGATTATC-------------AAACAAAAAACAGATCTAAAGACTGTGTGTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTTTTGATTCT--TTTTTATCTTTTGC-TATCATAAACCAACACATTCAGGAATGACCTATCAAACACAAGATCATAGTTGTTATGTCAGTTGCAACACAAGTCTTCCATATAATGTCGCT---ACCAACATAAAATCATATAAAACAAAATATTTGAAAAACAGGTGCAATTTATTTTATAATAAACCAAACAACCTGTGGTTGATAGACAGACAGAAAGCAACGAATAAAAAACATAGTATAGCACGGGTTGCCTCCATTCTA-TTTTGAGACGACCCCCA-TATAATGAGTTTCTGACCAAAATC-GCG-TG-AAC--TTC--AACTTTCACCACCGAA----------AAAGTTGT-TCAAA----ATCTGATATTTTGTATGTTTTTCGTCGTTATAAATAATACTTTAGATGT-------TGCAGGCATACTAGAAGTTT-TGATATTT-ATAGCACATGTATAAAAAAACG--AAAAACAACACAT-TCGTATAATAGCGTAA----ACGTCAATA-AA-A--ATG-GCTGATTTTCACGAACGACGAAGG-----------------------CTTTTGCGCTAGTTCAAA-TCGATTTTTTAAATAAACAAAGCAAGTATGCTACA-TTT-T-AAAG-TATTTCAGTCTTTCGTTTAT---TA----ATATAAATAATTTTGAATCGAACGTCAATCTGATATAGTGGTATTGAAACCGACA-TTTCCATTT-TTCTTTACATTTTACCAAAATAAATGGTGGC-AAAATATA-T---A--CATCGCTTGGGACGCTGAA-------G-G----G--------ACTATT--T--A--C-CGT-TGCTATATTAATGCGCAATAGT----CGTCTGCATTTCATGTCATTTTAGACGAAATTGTATTTTTTGACTATCGTATATTTGAAGTGTTTTT
gi|10 : TAATTTCTTGTCAGAATATGATATACG-ATTGACCAATAAGCTCATTTACTACTGGCAGTATGATA-TA-TTCTT-CCACATTGACTCCGTATTTT--GA-----------------------GATA--
gi|12 : aaaatcaaaggcctgatgtttctgagggaagtccgactacctgaagaaattcatcaatattaggatttgggaaactaaaaaaacgtgttcaattgagttacagtacaacatcaaagcaatacagtgtcactttgacgactatatacatttaactatttaagacagtgaatataaaacatactgcataaacaaccccattagcatgaataaaatatttgccgactacgaccatacccaaacaatttgaccagaatgaaagaaatagcaatacagaatgacaacgaacaatggaaatcagttaatgtatattgcccatcacgtctttcttAAAAAAAATAGTTCC-AAAATATATTT--A-TCATCACTTGGGACGCTGAA-------G-GAGGGG--------ATTATT--TTTA--C-CGT-TGTTGTATAAATGTGCAATAGT----CGTTTGAATTTCATGTCATTTTAGTTGAAAATGTAGGTTTTGACTACCACATATTTGA--TGTTTTTcgt
gi|13 : AATTTTGATTT-TTCCCTGCATTTTGCCAAAACAAATGGTGGC-----TATATT---AATCATCGCTAGGGACGCTGGA-------GTG----G--------ACTATT--T----------------TACTAATGCGCAGTAGTTAGTCGTCTGCATTTCATGTCATTTTAGTAAAAATTGCACGCTTTGACTACCGCATATTTTAAGTGCTTTTtacaaaaatcacaatacaaatttggattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgctgtcaacagtataacaaaattatagaacaaaattatatttcggtctgtgccatccctatagaaggtatcgctactcacctaccaataaatgact
gi|13 : tATGTA---ACGATCCAAATTTGATTTT--GTTGC-GATTTTT--GTT-------TTATC-------------AAACAGAAAGCAAAgctttctgtttgataaaacaaaaatcgcaacaaaatcaaatttggatcgttacatcctgtgctatggcaattgcattttaaaatgtttggaactattttatctgtcagaggaaatgaaatcgccatcatcagtataacaaa
gi|14 : taattttgatttttccctgcattttgccaaaacaaatggtggctatattaatcatcgctagggacgctggagtggactattttactaatgcgcagtagttagtcgtctgcatttcatgtcattttagtaaaaattgcacgctttgactaccgcatattttaagtgctTTT-CCAAAA-ATATAGCGGCCAAAATATATTT--A-TCGTCGCTTGCGACGCTGAAGT-----G-G----G--------A-------------------------ACCAATGCCCAGTAGC----CGTCAGCATTTC----------AGTGGAAATTG-----------TACCGCATATTTGAAGTGTTTTcctgtgctatggcaattgcattttaaaatgtttggaactattttatctgtcagaggaaatgaaatcgccatcatcagtataacaaa
gi|15 : ACACAT-TCATATAATAGCGTAATTAAACATCAATAGAA-A--ATG-ATTGATTTTCA-GAATGACGAAAGAGG-A-AA-CAAGA-AACATTTACCTTTGCGCAAGTTCAAAATCGATATTTTGAATAAACAAAGCAATTACATTACC-TTTAT-AAAG-TATTCAAGCCTTTCTTTTAT---TA----ATATAAATAATTCCGAATCGAACATCAATCTGAAATCATGATATTGAGACC-ACAGTTTCAATTT-TTCCCTGCATTTTgctctccgaaagaacgaaaacaaacaatataatctgctatagcgttttgaaacttttggaactattttattggttggaggaaatgaaatcaccgtcaacagtataacaaaggttatagaacaaaagtgtaaatgggccgcacgatcactatagaaggctacgttcgccttccaagtatata
gi|16 : TTCAAGCCTTT--TTTAT---TA----ATATAAATAATTGCGTATCGAACGTCAATCTGAAATCCTGATATTGAAATC-ACAATTTAAGTTT-TTTTCTGCA----------AGAAA-GGCTGCCAAAATATATTT--A-TCGGCGCTTGGGACGCTGAA-------G-T----G--------ACTATT--T--TTTC-CAT-CGCTTTCCTAATACACAGTGGA----CGTCTGCATTTCATGTCACTTAAGTATAAATTGTATGCTTTGAC-ACTGCATATTTGAAGTGTTTTTggtggccttaatatgtttaaagggtaattaaaatgctatataattt
gi|17 : TAGTTTCTTATCAGAATATGATGTAAGGATTAACCAATGAGCTCATTTACTACTGGCATCATAATA-TA-TTATT-CCACAATGACCC--TGTTTC--AA-----------------------AATA--ATCAATTTG-TTATTCCTTGCAAAAT------GTAGAATTCGCACTTAAGACCCCATctctctgtttgatagaacaaaaatcgcaata
gi|19 : tcacttgcagttttgactatcatgtcgtttttcttCATTTTGAAAATAACATTGACTACCGTAGTCTATAACTTTTT-CATGAACTTTAAATGTATATCAACAATGAAAAggattttgttgaccgtcttacagcacaaagagcatatattggaggatgacttccaatgtcctgggttgacagacatcaccggcg
gi|2 : tATTACTACGGATCAATAAATTGGCAAAACGTCAGT-GTTCC-TAACCGTTACTGATATA---AAACTGTTTACAACTGATATTATGTAACATATTATTGGAGGTA----------ACACCTTCAGAT--------------------ATTTTCGGATCATTATTTTTTCATTTATGCCTATAGATTATTTTATTATCTTAAAAAAC-ATTGTATGCATAATCAAAATGAAGAACAAAT-T--AT--TATTTTTCAATTACAGTAAATGAAA-------ATTGCACTTACTGATTCAGTGATAACATCATG-A---ACCAGCCACATTTG--TTT--GTTACAGA-TTTTTTATTG-AATGACTATCGAAAAAAAGAACGAAAAAAAAGACAGATCTAAAGACatcgttaatccaccaagaccgtttttgtacattttacaattgtttactttttgttaattgttgcagtcagtcatctggaaagtaaacattgaaatttaaagcttcagtatgcctagaaatcaatattattgcatacatagag
gi|2 : cttggaaannnnnnnnnnAT--------------------A------------GATTATTTTA----------------------TTATCTTAAAAAACA-TTGTATGCATAATCAAAATGAAGAACAAAT--T-AT--TATTTTTCAATTACAGTAAATGAAAATTGC--A-----CTTACTGATTCAGTGATAACATCATG-A---ACCAGCCACATTTG--TTT--GTTACAGATTTTTT-ATTG-AATGACTATC-------------GAAAAAAAG--------AACGAAAAAAAAGACAGATCTAAAGACAGATAAAAATATGTATTTTTTTAATTCAAATATGGTTATTTTCTAATTTTTAGTTGACGATGACACAGCTGTATACAGTTTTGATTCTTGTTTTTA----TTGTATACCATAAACCAACACATTCATGAATGACCTATCAAACACGTGATCATAGCTGCTATGTTAGTAGCAACA-AAGTCTTCCATGTAATGTAGCT---ACGAACATAAAATCATATGAAACAAAATATTTGAAAGATGGATGCAATTTATTTTATAATAAACCAAACAACATGTGGTTGATAGATAGGAAGAAAGAAACGAAAAAACTATATAGTATAACACGGGTTGCCTCagataaaaatatgtatttttttaattcaaatatggttattttctaatttttagttgacgatgacacagctgtatacagttttgattcttgtttttattgtataccataaaccaacacattcatgaatgacctatcaaacacgtgatcatagctgctatgttagtagcaacaaagtcttccatgtaatgtagctacgaacataaaatcatatgaaacaaaatatttgaaagatggatgcaatttattttataataaaccaaacaacatgtggttgatagataggaagaaagaaacgaaaaaactatatagtataacacgggttgcctc
gi|20 : cttggaaannnnnnnnnnattactacggatcaataaattggcaaaacgtcagtgttcctaaccgttactgatataaaactgtttacaactgatattatgtaacatattattggaggtaacaccttcagatattttcggatcattattttttcatttatgcctCAAAAACTACAGTAGACA--TTC-ATAGTGAATGACACTTACTAACACCATTCCCACATTACTAGAGGTTATTTAATCAACAAAGCAT-ATTGGTTTC-TCCCTGTTATTGATATA---AAACTGTTTACAACTGAAATTCGGTTCGAGGTTAT
gi|21 : aaatagccttgaaaccattttattactatctatctactgttctatCGAAAACCACAGTAGACAATT-G-GTAGTGAATGACACTTACAAACACTATTCC-----TAATATGGATTATTAAATCAGCAAAACATCAGT-GTTCTATTTCCGTTACTCACATG---AAACTGCTTACAAATGAAGTCCTGTTACAGATGATTGGAAGGA----------ACACTTTCAGAT--------------------A----------------TTTTCA----------------------
gi|22 : TTGTCAAACTATGACATACGGATTTACTAATGAACTCATTTACTATAAGCATCATAATA-TA-TTATT-CCACATTGGCTCCGTGTTTC--GA-----------------------AGTA--ATCAAT----TTGTTCCTTGCAAAAT------GTATAATTTGCAT---AGA--CTGGTTTG------------------------TATA---TTCT-AACAAACTTTAAGCATATGTAACAGgataggatcctta
gi|24 : TAATTTCTTGTCAGATT-TGATATACAGATTTACCAATGTGCTCATTTACTACTGTCATCAGAATA-CATTT-TT-CCACATTGACTCTGTGTTTC--GA-----------------------AATA--AACGATT
gi|25 : gggtaaatatgttatttatttttggagatattgtgttgtgtcgtctttcttATAT-TTGTATAATAGCGTAA----ATTTCAATA-AA-A--ATTTACTGATTTTCATGACCGACGAAAGAGG-TTAG-CACAA-A-CAATGGCCTAAGCATAAGTTCAAA-TCAATATTTTTAATAAACACAGCAAGTATAATACA-TTTCT-AAAG-T
gi|26 : TGCTTC--AA-----------------------GATAGGAT---TTTGATTATTTC---CAAAATA-----GTA-AATTT---TTTG---TTCC---TTG----CAATATTTTC-----TGGTTTATAAC-TTTTACACAAACTTTAAGCATAAGT
gi|29 : tttccatat--ATTGCACTAACCGATTCAATGATAACATCATA-ATTAACCAGCCATATTTG--TTG--GTTATAGATTTTTTTATTGAAA-GATTATC-------------ca
gi|3 : TAGTGAAGGACACTTACAAAC
gi|3 : aaaaccttaataattaaaatgacactTAATTTCCTGTCACAATATGATATACAGATTTACCAATGAACTAATTTACCACTTGCATTATAATA-TA-TT-TTTCCACACTGACACCATGTTCC--AAGATATGATTTTGATTATTTCCATAATA--ATCAATTTG-TTGTTCCTTGCAACAT------GTATATTTAGCACTTGTGATGCCATTTTGAAAATAACATTGAC-----TGGTTTATAACTTTTT-CACAAACTTTAAACATcttaataattaaaatcaaaggcctaaatggcctgagggaaggccattaatattaggatttgggaaattgacagtatagcatcaaagcagtacagttcactttaaatgatcagtggttttgacggctaaaaaatgtcactatttaagacagtgaatataaaacatgctgcatcagcatcatcttcaccataaaatattaactgaccatgatcatactcaaacaaattgaacagaatgaaaaaatagcaataaaacttgatgacaaaccaatgaaaacaattaatgtcaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnactttaatttcctgtcacaatatgatatacagatttaccaatgaactaatttaccacttgcattataatatatttttccacactgacaccatgttccaagatatgattttgattatttccataataatcaatttgttgttccttgcaacatgtatatttagcacttgtgatgccattttgaaaataacattgactggtttataactttttcacaaactttaaacat
gi|31 : aaaaccttaataattaaaatgacacttagtgaaggacacttacaaaccttaataattaaaatcaaaggcctaaatggcctgagggaaggccattaatattaggatttgggaaattgacagtatagcatcaaagcagtacagttcactttaaatgatcagtggttttgacggctaaaaaatgtcactatttaagacagtgaatataaaacatgctgcatcagcatcatcttcaccataaaatattaactgaccatgatcatactcaaacaaattgaacagaatgaaaaaatagcaataaaacttgatgacaaaccaatgaaaacaattaatgtcaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacttTTGGGCCACTGAA-------G-G----GTGGGGTGAACTATT--TTTA--T-CGT-TGTTGTAGTAATGTGCCGTAGT----CCTATGCATTTCATG
gi|32 : tt--AAA---AACACAT-TCTTATAATAGCGTAA----ACGTCAATA-AA-AACATG-GCTGAT
gi|4 : cAATTTCTTGTCAGATTATGATATAAGGATTTACCAATGAGCACATTTACTAATG-----ATATTA-TA-TT-TT-CCACAATGACTCTGTGTTTCTGGA-----------------------TATG--AT---TTTGATTATTTC---CGAAATAATCAAGTTCCATTCACACTTGTGTTGCCATTTTGAAAATAACAGTGAC-----TGGTTTATAATATTTT-CATGAACTTTAATTATTTGTAAAATGTGAAAACT
gi|5 : tgacagtattctagtcaatggagtaaaataatggggtactggtcctgaccaatttgtaggagtatttattcaattgagtcacagtataacatcgaagcagctgtcagaccacagcagaacagtgtcactttaattagtggttttgatgactaaataaatcaaactatttaagagtgattataattttttttgcataaacaacatccttttaattttcagcataaaatatcagccctggactataaccatacccaacgaattgaccagaatgaaaaaaaatagcaataaagcttgacgactaaccagggtaattaagttaatgtcttatcatttacagttttgcccattatatcgtcttccttaGTAATGTAGTTTTGACCAT--TAAAATCATATAAAACAAAATATTTGAAATAAAGAT-CAATTTAGTTGATAATAAATCAAACAGCCTATGGTAGATAGAGAGAAAGAAAGAAACGAACAAACATCATAGAATAACACAGGTTGCCTCAATTATACTTTTGAAACGACCCCCA-TATAATGTGTTTCTGACC-AAATTGG-T-TG-AACAATGCAAAA-----AAAAACAAG----------CAAGTGGTGTTAAATTTTTTTTAGTCTTTTGAATGTATTTCGTCATTATAAATAATACTTTAAATGT-------GACAGGCATACTAGAAG-TTCTG--ATTTGAAAGCACATATATAAAAAA--A--AA-------ACAT-TTGTAAAACAGCGTAA----ATGTAAAAA-AATA--AAG-ACCGATTTTCACAAATGGCGAAAGAGA-A-AAGCACAA-A-TGTTGACGGTAGTGTGAGTTCAAA-TCAATATTTTGAATAAACATAGCAAGTGTATTACCTTTT-T-AAAG-TATTCCAACCTTACTTTAGT---TT----ATATAAATAATTCTGAATCAAACATTA--TTGAAATTGTCATATTGAGACC-ATAATCTCAATTT-TTCACAGTATTTTAgataaccag
gi|6 : TAGTATAACACGTGTTGCCTCCCTTCTACTTTTAGTACGACCCCCAATATAATGTGTTTCTAACG-ACTTC-A-A-CACAAC--TGC--AA-----ACAATCGAA----------CAAGTTGTGTTAAACA--ATCTAATATATTGTATGTATTTCGTCATTATAGATAATAATTTAAATGTTAAATGTGGCTGGCGTACTAGAAG-T-----------ATAGCACATGTATAAAAAA-------------CACATATGGTA-AATGGCGTAA----ACGTCAATAGAA-A--ATT-ACTTATTTTCA-GAATGATAAAAGAGG-A-AA-CAAGATA-CATTTACCTTTGCGCGAATTCAAA-TCGATATTTTTAATAAACAAAGCAAGTACACTACC-TTT-TTAAAG-TATTCCAGCATTTCTTTTAT----A----ATATAAA--------------ATGTCAATCTGAAATCGTGGTTTTGATAAC-ACAGTTTCAATTT-TCCCCTGCATTTTACCAAAAT-AATGGCGGC-GTTAT-TATTCTAA-TCGTCGCTTGGGCCGCTGAAGGAGGTGG-G----G--------TCTATTTCT--A--C-CGT-TGTCATAGTAATGCGCAGTAGT----CGTCTGCATTTCATACTTTTTTATTTGAAACTGTATGCTTTGA
gi|7 : GTTGCATCCCTTCTACTTTTGAGACGACCCCCA-TAAAATGTGTTTCTGAGC-AAATT-G-TGTG-AAA--TTC--AACTTTCACCACCGAAAAATATTGAACAAGTGGTGTTAAACAA-ATCTAATATTGTGTATGT-TTTCGTCGTTATAGTTACGACTTTAAATGT-------GGCAGGCATACTAGAAA-TTATG--ATTTTATAGCAAAAGTATTAAAAA--GGAAAG---ATCACAT-TCGTATAAAAGCTTAG------------------------------TTTTACGAACAACGAATGAGGTA-AG-CACAA-A-CATTGCCCTTTGCGCGAGTTCAAC-TCGATATTTTGAATAAACGAAGTAGTTATACTAAC-TTT-A-AAAATTATTCCAGCCTTTCTTTTATAAGTACGAGGTATAATTAATTCCGGATCGAACGTCAATC-----TC----TAATGAGACC-ACAATTT-GATTTATTTCCTGCATCTt
gi|7 : aCATCTCTTGGGATGCTGGAAAGG---G-G----G--------A-TATT--T--G--TACATATGTTATACTAATTCGCAGTAGT----CATCTGCAATTCATGcttgggatgctggaaagggggatatttgtacatatgttatactaattcgcagtagtcatctgcaattcatg
gi|8 : agttgcatcccttctacttttgagacgacccccataaaatgtgtttctgagcaaattgtgtgaaattcaactttcaccaccgaaaaatattgaacaagtggtgttaaacaaatctaatattgtgtatgttttcgtcgttatagttacgactttaaatgtggcaggcatactagaaattatgattttatagcaaaagtattaaaaaggaaagatcacattcgtataaaagcttagttttacgaacaacgaatgaggtaagcacaaacattgccctttgcgcgagttcaactcgatattttgaataaacgaagtagttatactaactttaaaaattattccagcctttcttttataagtacgaggtataattaattccggatcgaacgtcaatctctaatgagaccacaatttgatttatttcctgTAATTTTTTGTCATAATAT-------------ACCAGTGAGCTCATTTACTATTT---TTATAATAATT-TT-TT-CCACATTGACTCCGTGTTTC--GA-----------------------AGT
gi|9 : atcgtgacatatcagcctctttggaacacaacaaacatgacatacttttccttctaatagatattggtgatgtctattttagataaggttttttgttgatggtgtaaaataaatgagtactgaccaatttataggattacagtactgatcattgcttaagactactaaatagatttaactatttagacagtaaataatatcaaacatgctgcataaataacatcatgcaaatcttcagcataaaatattaacaaattatgatatacccaagcaaattgactagaatggaaaaaatagcaataaaacttgacgactaaccatggaaattagtcattgtctgatcattcacagttttgcccatcatgtcttggtcttttttTAATTTCTTGTCAGAATATGAT-CGCAGATTTACCAATGAGCTCATTTACTACTGGTATCATAATA-TGTTT-TT-CCACAACGATTTCGTGTTTT--GA-----------------------AATA--AACAATTTG-TTGTTCCTTGCAAAAT------GTAGAATTTGCACTTGGGATACCAATTTGAAAATAACATTGAC-----TGGTTTATAAC-TTTT-CACAAACTTTAAGCATATGT-AAAGACGAAAA-----------A--T-C-------AAT----------AACACTATTCCCACAATATAACAGATTATTTAAACAGCAAAACGGCAGT-ATTCC-TTCCCGTTACTGATATG---AAACTGTTTACAACTGAAATTCTGTTACAGATTATTGGAAGTAATCATAAGTGATACTTTCAGATCATTATTGTTTTATTTCGGCA------------TATTCTTTCA----------------------TCATCTTGAAAATCAATTGTATGCATATTCAAAATGAAGTACAAATGTTGTT--TTTTTTTCAATTACCGGTAgt
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): AAAACTAAAAAATGAAATGAAAATAAACGAGGTAACTTAAATAAAACAAAAATCATAGTCCTGAATGACCTGAGGGATGGCTTTGCTACTTGGACAAATTCACTAATAATAGGATTTGAGCAATTGAAAAACTTGTTCGACTGAGCTACTGTACTGTGTAACTCAAAGTAGAACTGTCAACAGTGTCACTTTGATCAATGGTTTTGACGACTAAATAATTTTAGCTATCTAAGACAGTGAGTATAAAACATGCTGCATAAACAACACCTCAGCATAAAATATTAGCAGACTATGACCGTAACCAAACAAATTGACCAGAATAGAAGAAATAGCCATAAAGCTTGATGATGAACCATGGAAATCA
Unaligned ( gi|18 ): GACAGCACTCTAGATAAAGTTAAAGGCAATGTAGTAAGGAGTATTCAATTCAGTTACTGTACGCTGGCCAAAGCAGTACAGTGTCATTTTGATGACTAAATAAATTCTACTATTTAGACAATGATTATAAAATTTTAATTATAAAACATGCTGTAAAAAACAACACCCTTTTAAGTTTAGTTGGCTATGACCATACACAAACAAATTGACTAGAATGAAAATAGTAACAATA
Unaligned ( gi|23 ): CTTCAAATAATCAGTTGTTTTGACGACTAAATAAATTTATGTAACTATTTAAGACAATGAATATAAAACATGCTGTATAAACATTTTCAGCATAAAATATTAGCCGACTATGACCATACCTAAACAAAGTGATGACAAACCATGAAATCAGTTAATGTCTAATTG
Unaligned ( gi|27 ): GCACTTCAGAACCCGGTGGATTTTGCTGATCGTATTGCAGCACAAAGAGAATATATTTGAGGACGACTTCCGATGTCCTGGGTTGACAGAAACATCACCAGCG
Unaligned ( gi|28 ): CACGAAACCGACGAACGATAGATAAGTCACAATACATCATGACATAAGTCTCTTAGGAACACAACAAACACGACATACTTTTAACTTCT
Unaligned ( gi|30 ): ACAGTATAACAAAGATTACAGAGCAAAATTAAACCTCTGACAATGGCTATAGAACGCGTCGCTCCAGTCGCCTTCCAAAAA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 33333333333333333333333 1 222222 111111 11111 11 3333333 111 4444444444 55555555555555555555555555555555555555555555555555555555555555555 333333333 5555555 222 11 222 44444 11 2222 1 1 222 1 1 3333333 11 22222 4444444444 1 3333 3333333 33333333333333 1 444444444444 1111 1 111111 111 222222222 11 111111 444444444444444444444444444444444444444 1111
lowQualScore : 0 3 4 8 2 4 0 0 55 77777777777777777777777 66 2 1 5 222222 6 4 1 888 111111 6 22222 66 5 2 0 5 888 1 5 0 1111111 1 2 1 1 1 8 8 1 444 3333333333 99999999999999999999999999999999999999999999999999999999999999999 1 7 1 000000000 22 2222222 0 0 333 0 88 7 1 55 111 33 11111 88 4444 5 1 1 1 5 333 6 1 44 6 1 1 1 2 0 0 0 1111111 33 1 66666 1 0 3333333333 0 0000 9 2222222 99999999999999 0 000000000000 5 1 2222 1 8888 66 9 3 444444 44 888 6 1 6 555 6 000000000 1 1 5 6 55 5 5 7 55 77 666666 777777777777777777777777777777777777777 0 5 0 4 0 0000 1 1 1 0 0
lowQualScore : . . . . . . . . .. ....................... .. . . . ...... . . . ... ...... . ..... .. . . . . ... . . . ....... . . . . . . . . ... .......... ................................................................. . . . ......... .. ....... . . ... . .. . . .. ... .. ..... .. .... . . . . . ... . . .. . . . . . . . . ....... .. . ..... . . .......... . .... . ....... .............. . ............ . . .... . .... .. . . ...... .. ... . . . ... . ......... . . . . .. . . . .. .. ...... ....................................... . . . . . .... . . . . .
lowQualScore : 8 9 4 9 0 0 3 7 55 00000000000000000000000 11 5 4 0 111111 6 0 0 777 000000 2 55555 44 0 0 2 6 333 4 6 6 0000000 0 5 0 0 4 0 0 4 000 8888888888 00000000000000000000000000000000000000000000000000000000000000000 0 3 0 333333333 00 8888888 7 7 333 7 33 3 0 55 000 55 55555 00 0000 5 0 0 0 0 333 7 0 33 7 0 0 0 5 2 0 0 0000000 88 0 55555 0 2 8888888888 8 2222 8 5555555 22222222222222 0 777777777777 7 7 1111 4 0000 44 3 5 333333 77 333 7 0 7 333 7 333333333 0 8 2 7 77 7 7 5 00 99 444444 444444444444444444444444444444444444444 2 0 8 0 2 6666 0 7 5 8 8
consensus : TAATTTCTTGTCAGAATATGATATACGGATTTACCAATGAGCTCATTTACTACTGGCATCATAATA-TA-TT-TT-CCACATTGACTCCGTGTTTC--GA-----------------------AATA--ATCAATTTG-TTGTTCCTTGCAAAAT------GTANAATTCGCACTTGNGACGCC----ATTTTGAAAATAACATTGAC-----TGGTTTATAAC-TTTT-CACGAACTTTAAGCATATGTAAAAGACGAAAACTACAGTAGACA--T-C-GTAGTGAATGACACTTACAAACACTATTCCCACATTANTACGGATTATTAAATCGGCAAAACGTCAGT-GTTCC-TCCCCGTTACTGATATA---AAACTGTTTACAACTGAAATTCTGTTACAGATTATTGGAAGTA----------ACACTTTCAGAT--------------------A------------TATTTTTTCA----------------------TCATCTTAAAAATCAATTGTATGCATATTCAAAATGAAGAACAAATGTTGAT--TATTTTTCAATTACAGNTAACGAAAATTGT--ATTGCACTTACCGATTCAATGATAACATCATAA---ACCAGCCATATTTGTTT--GTTACAGATTTTTTTATTGAATGATTATCGAANAAAAGANNGATCTAAAGANNGTGTGTACAGATCTAAAGACAGATAAAAATATGTATTTTTTTAATTCAAATATGGTTATTTTCTAATTTTTAGTTGACGATGACACAGCTGTATACAGTTTTGATTCTTGTTTTTATCTTTTGCATACCATAAACCAACACATTCANGAATGACCTATCAAACACGNGATCATAGCTGCTATGTCAGTNGCAACACAAGTCTTCCATGTAATGTAGCT---ACCAACATAAAATCATATAAAACAAAATATTTGAAANACGGATGCAATTTATTTTATAATAAACCAAACAACCTGTGGTTGATAGANAGAAAGAAAGAAACGAANAAACAACATAGTATAACACGGGTTGCCTCCNTTCTACTTTTGAGACGACCCCCA-TATAATGTGTTTCTGACC-AAATC-GCGCG-AAC--TNCAACTTTCACNACC----------GAACAAGTGGTGTTAAA--C-AATCTAATATTTTGTATGTATTTCGTCGTTATAGATAATACTTTAAATGT-------GGCAGGCATACTAGAAG-TT-TG--A-TTT-ATAGCACATGTA-TAAAAAA--GAAA---AA-CACAT-TCGTATAATAGCGTAA----ACGTCAATA-AA-A--ATG-ACTGATTTTCACGAACGACGAAAGAGG-A-AA-CACGA-A-CATTGACCTTTGCGCGAGTTCAAA-TCGATATTTTGAATAAACAAAGCAAGTATACTACC-TTT-T-AAAG-TATTCCAGCCTTTCTTTTAT---TA----ATATAAATAATTCCGAATCGAACGTCAATCTGAAATCGTGATATTGAGACC-ACAATTTCGATTT-TTCCCTGCATTTTACCAAAANAAATGGCGGC-AAAATATATTT--AT------CGTCGCTTGGGACGCTGAA-------G-G----G--------ACTATT--T--A--C-CGT-TGTTATACTAATGCGCAGTAGT----CGTCTGCATTTCATGTCATTTTAGTNGAAATTGTATGCTTTGACTACCGCATATTTGAAGTGTTTTT
Reference ( family-550 ) : TAATTTCTTGTCAGAATATGATATACGGATTTACCAATGAGCTCATTTACTACTGGCATCATAATA-TA-TT-TT-CCACATTGACTCCGTGTTTC--GA-----------------------AATA--ATCAATTTG-TTGTTCCTTGCAAAAT------GTANAATTCGCACTTGNGACGCC----ATTTTGAAAATAACATTGAC-----TGGTTTATAAC-TTTT-CACGAACTTTAAGCATATGTAAAAGACGAAAACTACAGTAGACA--T-C-GTAGTGAATGACACTTACAAACACTATTCCCACATTANTACGGATTATTAAATCGGCAAAACGTCAGT-GTTCC-TCCCCGTTACTGATATA---AAACTGTTTACAACTGAAATTCTGTTACAGATTATTGGAAGTA----------ACACTTTCAGAT--------------------A------------TATTTTTTCA----------------------TCATCTTAAAAANCAATTGTATGCATANTCAAAATGAAGAACAAATGTTGAT--TATTTTTCAATTACAGNNAACGAAAATTGC--ATTGCACTTACTGATTCAGTGATAACATCATGA---ACCAGCCACATTTGTTT--GTTACAGATTTTTTTATTGAATGATTATCAAANAAAAGACAGATCTAAAGACNGNGNGNACAGATCTAAAGACAGATAAAAATATGTATTTTTTTAATTCAAATATGGTTATTTTCTAATTTTTAGTTGACGATGACACAGCTGTATACAGTTTTGATTCTTGTTTTTATCTTTTGCATACCATAAACCAACACATTCANGAATGACCTATCAAACACGNGATCATAGCTGCTATGTCAGTNGCAACACAAGTCTTCCATGTAATGTAGCT---ACCAACATAAAATCATATAAAACAAAATATTTGAAANACGGATGCAATTTATTTTATAATAAACCAAACAACCTGTGGTTGATAGANAGAAAGAAAGAAACGAANAAACAACATAGTATAACACGGGTTGCCTCCNTTCTACTTTTGAGACGACCCCCA-TATAATGTGTTTCTGACC-AAATC-G-NCG-AAC--TNCAACTTTCACNACC----------GAACAAGTNGTGTTAAA--C-AATCTAATATTTTGTATGTATTTCGTCGTTATAGATAATACTTTAAATGT-------GGCAGGCATACTAGAAG-TT-TG--A-TTT-ATAGCACATGTA-TAAAAAA--GAAA---AA-CACAT-TCGTATAATAGCGTAA----ACGTCAATA-AA-A--ATG-ACTGATTTTCACGAACGACGAAAGAGG-A-AA-CACGA-A-CATTGACCTTTGCGCGAGTTCAAA-TCGATATTTTGAATAAACAAAGCAAGTATACTACC-TTT-T-AAAG-TATTCCAGCCTTTCTTTTAT---TA----ATATAAATAATTCCGAATCGAACGTCAATCTGAAATCGTGATATTGAGACC-ACAATTTCGATTT-TTCCCTGCATTTTACCAAAANAAATGGCGGC-AAAATATATTT--AT------CGTCGCTTGGGACGCTGAA-------G-G----G--------ACTATT--T--A--C-CGT-TGTTATACTAATGCGCAGTAGT----CGTCTGCATTTCATGTCATTTTAGTNGAAATTGTATGCTTTGACTACCGCATATTTGAAGTGTTTTT
gi|1 : TAATGTCTTGTCAGAAAATGATATACGGATTTACCAATGAGCTCATTTACTAATGGCATCATAATA-TA-TT-TT-CCACATTGACTCCGTGTTTC--GA-----------------------AATA--ATCAATTTG-TTGTTCCTTGCAAAAT------GTAGAATTAGCGCTTGCGACGCC----ATTCTGAAAATAACATTGAC-----TGTTTTATAAC-TTTT-CACAAACTTTAACCCTATGTAAAAGACGAAAAAT-CAATAACCT--T-CGGTAGTGAATGACACTTACAAACACTATTCCCACATCAATACAGATTATTAAGTTGGCAAAACGTCAGT-GTCCC-TCCCCGTTACTGAAAAAGACAAACTGTTTACACATGAAATTCTGTTACAGATTATTAGAAGTA----------ACACTTTTAGAT--------------------A------------TACTTTTTCA----------------------TCATCTTAAAAATCAATTGTATGCATATTCAAACTGAAGAACAAA-ATTAATAATATATTTCAATTACAGATAACGAAAATTGTAAATTGAACTTACTGATTCAATGTTAACACCATAA---ACCAGCCATATTTGTTTTGGTTACAGATTTTTTTATTGAATGATTATCAAACAAAAAACAGATCTAAAGACTGTGTGTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTTTTGATTCT--TTTTTATCTTTTGC-TATCATAAACCAACACATTCAGGAATGACCTATCAAACACAAGATCATAGTTGTTATGTCAGTTGCAACACAAGTCTTCCATATAATGTCGCT---ACCAACATAAAATCATATAAAACAAAATATTTGAAAAACAGGTGCAATTTATTTTATAATAAACCAAACAACCTGTGGTTGATAGACAGACAGAAAGCAACGAATAAAAAACATAGTATAGCACGGGTTGCCTCCATTCTA-TTTTGAGACGACCCCCA-TATAATGAGTTTCTGACCAAAATC-GCGTG-AAC--TTCAACTTTCACCACC----------GAAAAAGT--TGTTCAA----AATCTGATATTTTGTATGTTTTTCGTCGTTATAAATAATACTTTAGATGT-------TGCAGGCATACTAGAAGTTT-TGATA-TTT-ATAGCACATGTA-TAAAAAAACGAAAAACAA-CACAT-TCGTATAATAGCGTAA----ACGTCAATA-AA-A--ATG-GCTGATTTTCACGAACGACGAA-----------------------GGCTTTTGCGCTAGTTCAAA-TCGATTTTTTAAATAAACAAAGCAAGTATGCTACA-TTT-T-AAAG-TATTTCAGTCTTTCGTTTAT---TA----ATATAAATAATTTTGAATCGAACGTCAATCTGATATAGTGGTATTGAAACCGAC-ATTTCCATTT-TTCTTTACATTTTACCAAAATAAATGGTGGC-AAAATATA--T--A-------CATCGCTTGGGACGCTGAA-------G-G----G--------ACTATT--T--A--C-CGT-TGCTATATTAATGCGCAATAGT----CGTCTGCATTTCATGTCATTTTAGACGAAATTGTATTTTTTGACTATCGTATATTTGAAGTGTTTTT
gi|10 : TAATTTCTTGTCAGAATATGATATACG-ATTGACCAATAAGCTCATTTACTACTGGCAGTATGATA-TA-TTCTT-CCACATTGACTCCGTATTTT--GA-----------------------GATA--
gi|12 : aaaatcaaaggcctgatgtttctgagggaagtccgactacctgaagaaattcatcaatattaggatttgggaaactaaaaaaacgtgttcaattgagttacagtacaacatcaaagcaatacagtgtcactttgacgactatatacatttaactatttaagacagtgaatataaaacatactgcataaacaaccccattagcatgaataaaatatttgccgactacgaccatacccaaacaatttgaccagaatgaaagaaatagcaatacagaatgacaacgaacaatggaaatcagttaatgtatattgcccatcacgtctttcttAAAAAAAATAGTTCC-AAAATATATTT--AT------CATCACTTGGGACGCTGAA-------G-GAGGGG--------ATTATT--TTTA--C-CGT-TGTTGTATAAATGTGCAATAGT----CGTTTGAATTTCATGTCATTTTAGTTGAAAATGTAGGTTTTGACTACCACATATTTGA--TGTTTTTcgt
gi|13 : AATTTTGATTT-TTCCCTGCATTTTGCCAAAACAAATGGTGGC-----TATATTA--AT------CATCGCTAGGGACGCTGGA-------GTG----G--------ACTATT--T----------------TACTAATGCGCAGTAGTTAGTCGTCTGCATTTCATGTCATTTTAGTAAAAATTGCACGCTTTGACTACCGCATATTTTAAGTGCTTTTtacaaaaatcacaatacaaatttggattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgctgtcaacagtataacaaaattatagaacaaaattatatttcggtctgtgccatccctatagaaggtatcgctactcacctaccaataaatgact
gi|14 : tTTT-CCAAAA-ATATAGCGGCCAAAATATATTT--AT------CGTCGCTTGCGACGCTGAAGT-----G-G----G--------A-------------------------ACCAATGCCCAGTAGC----CGTCAGCATTTC----------AGTGGAAATTG-----------TACCGCATATTTGAAGTGTTTTgctttctgtttgataaaacaaaaatcgcaacaaaatcaaatttggatcgttacatcctgtgctatggcaattgcattttaaaatgtttggaactattttatctgtcagaggaaatgaaatcgccatcatcagtataacaaa
gi|15 : A-CACAT-TCATATAATAGCGTAATTAAACATCAATAGAA-A--ATG-ATTGATTTTCA-GAATGACGAAAGAGG-A-AA-CAAGA-AACATTTACCTTTGCGCAAGTTCAAAATCGATATTTTGAATAAACAAAGCAATTACATTACC-TTTAT-AAAG-TATTCAAGCCTTTCTTTTAT---TA----ATATAAATAATTCCGAATCGAACATCAATCTGAAATCATGATATTGAGACC-ACAGTTTCAATTT-TTCCCTGCATTTTgctctccgaaagaacgaaaacaaacaatataatctgctatagcgttttgaaacttttggaactattttattggttggaggaaatgaaatcaccgtcaacagtataacaaaggttatagaacaaaagtgtaaatgggccgcacgatcactatagaaggctacgttcgccttccaagtatata
gi|16 : TTCAAGCCTTT--TTTAT---TA----ATATAAATAATTGCGTATCGAACGTCAATCTGAAATCCTGATATTGAAATC-ACAATTTAAGTTT-TTTTCTGCA----------AGAAA-GGCTGCCAAAATATATTT--AT------CGGCGCTTGGGACGCTGAA-------G-T----G--------ACTATT--T--TTTC-CAT-CGCTTTCCTAATACACAGTGGA----CGTCTGCATTTCATGTCACTTAAGTATAAATTGTATGCTTTGAC-ACTGCATATTTGAAGTGTTTTTggtggccttaatatgtttaaagggtaattaaaatgctatataattt
gi|17 : TAGTTTCTTATCAGAATATGATGTAAGGATTAACCAATGAGCTCATTTACTACTGGCATCATAATA-TA-TTATT-CCACAATGACCC--TGTTTC--AA-----------------------AATA--ATCAATTTG-TTATTCCTTGCAAAAT------GTAGAATTCGCACTTAAGACCCCATGGATTTTG---------TTGAC-----CGTCTTACAG-------CACAAA----GAGCATATATctctctgtttgatagaacaaaaatcgcaata
gi|19 : tcacttgcagttttgactatcatgtcgtttttcttC----ATTTTGAAAATAACATTGACTACCGTAGTCTATAACTTTTT-CATGAACTTTAAATGTATATCAACAATGAAAAtggaggatgacttccaatgtcctgggttgacagacatcaccggcg
gi|2 : tATTACTACGGATCAATAAATTGGCAAAACGTCAGT-GTTCC-TAACCGTTACTGATATA---AAACTGTTTACAACTGATATTATGTAACATATTATTGGAGGTA----------ACACCTTCAGAT--------------------ATTTTCGGATCATTATTTTTTCATTTATGCCTATAGATTATTTTATTATCTTAAAAAAC-ATTGTATGCATAATCAAAATGAAGAACAAAT-T--AT--TATTTTTCAATTACAGTAAATGAAA-------ATTGCACTTACTGATTCAGTGATAACATCATGA---ACCAGCCACATTTGTTT--GTTACAGA-TTTTTTATTGAATGACTATCGAAAAAAAGAACGA---AAAAAAAG-----ACAGATCTAAAGACAGATAAAAATATGTATTTTTTTAATTCAAATATGGTTATTTTCTAATTTTTAGTTGACGATGACACAGCTGTATACAGTTTTGATTCTTGTTTTTA----TTGTATACCATAAACCAACACATTCATGAATGACCTATCAAACACGTGATCATAGCTGCTATGTTAGTAGCAACA-AAGTCTTCCATGTAATGTAGCT---ACGAACATAAAATCATATGAAACAAAATATTTGAAAGATGGATGCAATTTATTTTATAATAAACCAAACAACATGTGGTTGATAGATAGGAAGAAAGAAACGAAAAAACTATATAGTATAACACGGGTTGCCTCatcgttaatccaccaagaccgtttttgtacattttacaattgtttactttttgttaattgttgcagtcagtcatctggaaagtaaacattgaaatttaaagcttcagtatgcctagaaatcaatattattgcatacatagag
gi|20 : cttggaaannnnnnnnnnCAAAAACTACAGTAGACA--TTC-ATAGTGAATGACACTTACTAACACCATTCCCACATTACTAGAGGTTATTTAATCAACAAAGCAT-ATTGGTTTC-TCCCTGTTATTGATATA---AAACTGTTTACAACTGAAATTCGGTTCGAGGTTAT
gi|21 : aaatagccttgaaaccattttattactatctatctactgttctatCGAAAACCACAGTAGACAATT-G-GTAGTGAATGACACTTACAAACACTATTCC-----TAATATGGATTATTAAATCAGCAAAACATCAGT-GTTCTATTTCCGTTACTCACATG---AAACTGCTTACAAATGAAGTCCTGTTACAGATGATTGGAAGGA----------ACACTTTCAGAT--------------------A----------------TTTTCA----------------------
gi|22 : TTGTCAAACTATGACATACGGATTTACTAATGAACTCATTTACTATAAGCATCATAATA-TA-TTATT-CCACATTGGCTCCGTGTTTC--GA-----------------------AGTA--ATCAAT----TTGTTCCTTGCAAAAT------GTATAATTTGCAT---AGAC--------------------------------TGGTTTGTATA-TTCT-AACAAACTTTAAGCATATGTAACAGgataggatcctta
gi|24 : TAATTTCTTGTCAGATT-TGATATACAGATTTACCAATGTGCTCATTTACTACTGTCATCAGAATA-CATTT-TT-CCACATTGACTCTGTGTTTC--GA-----------------------AATA--AACGATT
gi|25 : gggtaaatatgttatttatttttggagatattgtgttgtgtcgtctttcttATAT-TTGTATAATAGCGTAA----ATTTCAATA-AA-A--ATTTACTGATTTTCATGACCGACGAAAGAGG-TTAG-CACAA-A-CAATGGCCTAAGCATAAGTTCAAA-TCAATATTTTTAATAAACACAGCAAGTATAATACA-TTTCT-AAAG-T
gi|26 : T-TT-CCATATTG--------CTTC--AA-----------------------GATAGGAT---TTTGATTATTTC---CAAAATA-----GTA-AATTT---TTTGTT---CC-------TTG----CAATATTTTC-----TGGTTTATAAC-TTTTACACAAACTTTAAGCATAAGT
gi|29 : --ATTGCACTAACCGATTCAATGATAACATCATAATTAACCAGCCATATTTGTTG--GTTATAGATTTTTTTATTGAAAGATTATCca
gi|3 : AATTAAAAT-GACA----C-TTAGTGAAGGACACTTACAAAC
gi|3 : aaaaccttaatTAATTTCCTGTCACAATATGATATACAGATTTACCAATGAACTAATTTACCACTTGCATTATAATA-TA-TT-TTTCCACACTGACACCATGTTCC--AAGATATGATTTTGATTATTTCCATAATA--ATCAATTTG-TTGTTCCTTGCAACAT------GTATATTTAGCACTTGTGATGCC----ATTTTGAAAATAACATTGAC-----TGGTTTATAACTTTTT-CACAAACTTTAAACATcttaataattaaaatcaaaggcctaaatggcctgagggaaggccattaatattaggatttgggaaattgacagtatagcatcaaagcagtacagttcactttaaatgatcagtggttttgacggctaaaaaatgtcactatttaagacagtgaatataaaacatgctgcatcagcatcatcttcaccataaaatattaactgaccatgatcatactcaaacaaattgaacagaatgaaaaaatagcaataaaacttgatgacaaaccaatgaaaacaattaatgtcaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnactttaatttcctgtcacaatatgatatacagatttaccaatgaactaatttaccacttgcattataatatatttttccacactgacaccatgttccaagatatgattttgattatttccataataatcaatttgttgttccttgcaacatgtatatttagcacttgtgatgccattttgaaaataacattgactggtttataactttttcacaaactttaaacat
gi|31 : aaaaccttaataattaaaatgacacttagtgaaggacacttacaaaccttaataattaaaatcaaaggcctaaatggcctgagggaaggccattaatattaggatttgggaaattgacagtatagcatcaaagcagtacagttcactttaaatgatcagtggttttgacggctaaaaaatgtcactatttaagacagtgaatataaaacatgctgcatcagcatcatcttcaccataaaatattaactgaccatgatcatactcaaacaaattgaacagaatgaaaaaatagcaataaaacttgatgacaaaccaatgaaaacaattaatgtcaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacttTTGGGCCACTGAA-------G-G----GTGGGGTGAACTATT--TTTA--T-CGT-TGTTGTAGTAATGTGCCGTAGT----CCTATGCATTTCATG
gi|32 : ttAAA---AA-CACAT-TCTTATAATAGCGTAA----ACGTCAATA-AA-AACATG-GCTGAT
gi|4 : cAATTTCTTGTCAGATTATGATATAAGGATTTACCAATGAGCACATTTACTAATG-----ATATTA-TA-TT-TT-CCACAATGACTCTGTGTTTCTGGA-----------------------TATG--AT---TTTGATTATTTC---CGAAATAATCAAGTTCCATTCACACTTGTGTTGCC----ATTTTGAAAATAACAGTGAC-----TGGTTTATAATATTTT-CATGAACTTTAATTATTTGTAAAATGTGAAAACT
gi|5 : tgacagtattctagtcaatggagtaaaataatggggtactggtcctgaccaatttgtaggagtatttattcaattgagtcacagtataacatcgaagcagctgtcagaccacagcagaacagtgtcactttaattagtggttttgatgactaaataaatcaaactatttaagagtgattataattttttttgcataaacaacatccttttaattttcagcataaaatatcagccctggactataaccatacccaacgaattgaccagaatgaaaaaaaatagcaataaagcttgacgactaaccagggtaattaagttaatgtcttatcatttacagttttgcccattatatcgtcttccttaGTAATGTAGTTTTGACCAT--TAAAATCATATAAAACAAAATATTTGAAATAAAGAT-CAATTTAGTTGATAATAAATCAAACAGCCTATGGTAGATAGAGAGAAAGAAAGAAACGAACAAACATCATAGAATAACACAGGTTGCCTCAATTATACTTTTGAAACGACCCCCA-TATAATGTGTTTCTGACC-AAATTGG-TTG-AACAATGCAAA---AAAAAAC----------AAGCAAGTGGTGTTAAATTT-TTTTTAGTCTTTTGAATGTATTTCGTCATTATAAATAATACTTTAAATGT-------GACAGGCATACTAGAAG-TTCTG--A-TTTGAAAGCACATATA-TAAAAAA--AAA--------ACAT-TTGTAAAACAGCGTAA----ATGTAAAAA-AATA--AAG-ACCGATTTTCACAAATGGCGAAAGAGA-A-AAGCACAA-A-TGTTGACGGTAGTGTGAGTTCAAA-TCAATATTTTGAATAAACATAGCAAGTGTATTACCTTTT-T-AAAG-TATTCCAACCTTACTTTAGT---TT----ATATAAATAATTCTGAATCAAACATTA--TTGAAATTGTCATATTGAGACC-ATAATCTCAATTT-TTCACAGTATTTTAgataaccag
gi|6 : TAGTATAACACGTGTTGCCTCCCTTCTACTTTTAGTACGACCCCCAATATAATGTGTTTCTAACG-ACTTC-A-ACACAAC--TGCAA-----ACAATC----------GAACAAGTTGTGTTAAA--C-AATCTAATATATTGTATGTATTTCGTCATTATAGATAATAATTTAAATGTTAAATGTGGCTGGCGTACTAGAAG-T------------ATAGCACATGTA-TAAAAAA------------CACATATGGTA-AATGGCGTAA----ACGTCAATAGAA-A--ATT-ACTTATTTTCA-GAATGATAAAAGAGG-A-AA-CAAGATA-CATTTACCTTTGCGCGAATTCAAA-TCGATATTTTTAATAAACAAAGCAAGTACACTACC-TTT-TTAAAG-TATTCCAGCATTTCTTTTAT----A----ATATAAA--------------ATGTCAATCTGAAATCGTGGTTTTGATAAC-ACAGTTTCAATTT-TCCCCTGCATTTTACCAAAAT-AATGGCGGC-GTTAT-TATTCTAAT------CGTCGCTTGGGCCGCTGAAGGAGGTGG-G----G--------TCTATTTCT--A--C-CGT-TGTCATAGTAATGCGCAGTAGT----CGTCTGCATTTCATACTTTTTTATTTGAAACTGTATGCTTTGA
gi|7 : GTTGCATCCCTTCTACTTTTGAGACGACCCCCA-TAAAATGTGTTTCTGAGC-AAATT-GTGTG-AAA--TTCAACTTTCACCACCGAAAAATATTGAACAAGTGGTGTTAAA--CAAATCTAATATTGTGTATGT-TTTCGTCGTTATAGTTACGACTTTAAATGT-------GGCAGGCATACTAGAAA-TTATG--ATTTT-ATAGCAAAAGTATTAAAAAG--GAAA---GATCACAT-TCGTATAAAAGCTTAG------------------------------TTTTACGAACAACGAATGAGGTA-AG-CACAA-A-CATTGCCCTTTGCGCGAGTTCAAC-TCGATATTTTGAATAAACGAAGTAGTTATACTAAC-TTT-A-AAAATTATTCCAGCCTTTCTTTTATAAGTACGAGGTATAATTAATTCCGGATCGAACGTCAATC-----TC----TAATGAGACC-ACAATTT-GATTTATTTCCTGCATCTt
gi|7 : aATTT--ATTTCCTGCATCTCTTGGGATGCTGGAAAGG---G-G----G--------A-TATT--T--G--TACATATGTTATACTAATTCGCAGTAGT----CATCTGCAATTCATGcttgggatgctggaaagggggatatttgtacatatgttatactaattcgcagtagtcatctgcaattcatg
gi|8 : agttgcatcccttctacttttgagacgacccccataaaatgtgtttctgagcaaattgtgtgaaattcaactttcaccaccgaaaaatattgaacaagtggtgttaaacaaatctaatattgtgtatgttttcgtcgttatagttacgactttaaatgtggcaggcatactagaaattatgattttatagcaaaagtattaaaaaggaaagatcacattcgtataaaagcttagttttacgaacaacgaatgaggtaagcacaaacattgccctttgcgcgagttcaactcgatattttgaataaacgaagtagttatactaactttaaaaattattccagcctttcttttataagtacgaggtataattaattccggatcgaacgtcaatctctaatgagaccacaatttgTAATTTTTTGTCATAATAT-------------ACCAGTGAGCTCATTTACTATTT---TTATAATAATT-TT-TT-CCACATTGACTCCGTGTTTC--GA-----------------------AGT
gi|9 : atcgtgacatatcagcctctttggaacacaacaaacatgacatacttttccttctaatagatattggtgatgtctattttagataaggttttttgttgatggtgtaaaataaatgagtactgaccaatttataggattacagtactgatcattgcttaagactactaaatagatttaactatttagacagtaaataatatcaaacatgctgcataaataacatcatgcaaatcttcagcataaaatattaacaaattatgatatacccaagcaaattgactagaatggaaaaaatagcaataaaacttgacgactaaccatggaaattagtcattgtctgatcattcacagttttgcccatcatgtcttggtcttttttTAATTTCTTGTCAGAATATGAT-CGCAGATTTACCAATGAGCTCATTTACTACTGGTATCATAATA-TGTTT-TT-CCACAACGATTTCGTGTTTT--GA-----------------------AATA--AACAATTTG-TTGTTCCTTGCAAAAT------GTAGAATTTGCACTTGGGATACC----AATTTGAAAATAACATTGAC-----TGGTTTATAAC-TTTT-CACAAACTTTAAGCATATGT-AAAGACGAAAA-----------A--T-C-------AAT----------AACACTATTCCCACAATATAACAGATTATTTAAACAGCAAAACGGCAGT-ATTCC-TTCCCGTTACTGATATG---AAACTGTTTACAACTGAAATTCTGTTACAGATTATTGGAAGTAATCATAAGTGATACTTTCAGATCATTATTGTTTTATTTCGGCA------------TATTCTTTCA----------------------TCATCTTGAAAATCAATTGTATGCATATTCAAAATGAAGTACAAATGTTGTT--TTTTTTTCAATTACCGGTAgt
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): AAAACTAAAAAATGAAATGAAAATAAACGAGGTAACTTAAATAAAACAAAAATCATAGTCCTGAATGACCTGAGGGATGGCTTTGCTACTTGGACAAATTCACTAATAATAGGATTTGAGCAATTGAAAAACTTGTTCGACTGAGCTACTGTACTGTGTAACTCAAAGTAGAACTGTCAACAGTGTCACTTTGATCAATGGTTTTGACGACTAAATAATTTTAGCTATCTAAGACAGTGAGTATAAAACATGCTGCATAAACAACACCTCAGCATAAAATATTAGCAGACTATGACCGTAACCAAACAAATTGACCAGAATAGAAGAAATAGCCATAAAGCTTGATGATGAACCATGGAAATCA
Unaligned ( gi|18 ): GACAGCACTCTAGATAAAGTTAAAGGCAATGTAGTAAGGAGTATTCAATTCAGTTACTGTACGCTGGCCAAAGCAGTACAGTGTCATTTTGATGACTAAATAAATTCTACTATTTAGACAATGATTATAAAATTTTAATTATAAAACATGCTGTAAAAAACAACACCCTTTTAAGTTTAGTTGGCTATGACCATACACAAACAAATTGACTAGAATGAAAATAGTAACAATA
Unaligned ( gi|23 ): CTTCAAATAATCAGTTGTTTTGACGACTAAATAAATTTATGTAACTATTTAAGACAATGAATATAAAACATGCTGTATAAACATTTTCAGCATAAAATATTAGCCGACTATGACCATACCTAAACAAAGTGATGACAAACCATGAAATCAGTTAATGTCTAATTG
Unaligned ( gi|27 ): GCACTTCAGAACCCGGTGGATTTTGCTGATCGTATTGCAGCACAAAGAGAATATATTTGAGGACGACTTCCGATGTCCTGGGTTGACAGAAACATCACCAGCG
Unaligned ( gi|28 ): CACGAAACCGACGAACGATAGATAAGTCACAATACATCATGACATAAGTCTCTTAGGAACACAACAAACACGACATACTTTTAACTTCT
Unaligned ( gi|30 ): ACAGTATAACAAAGATTACAGAGCAAAATTAAACCTCTGACAATGGCTATAGAACGCGTCGCTCCAGTCGCCTTCCAAAAA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 33333333333333333333333 1 222222 111111 11111 11 3333333 111 4444444444 55555555555555555555555555555555555555555555555555555555555555555 333333333 4444444 222 11 222 22222 11 2222 1 1 222 1 1 11111 11 22222 4444444444 3333 3333333 33333333333333 1 444444444444 1111 1 111111 111 222222222 11 111111 444444444444444444444444444444444444444 1111
lowQualScore : 0 3 4 8 2 4 0 0 55 77777777777777777777777 66 2 1 5 222222 6 4 1 888 111111 6 22222 66 5 2 0 5 888 1 5 0 1111111 1 2 1 1 1 8 8 1 444 3333333333 99999999999999999999999999999999999999999999999999999999999999999 7 000000000 1 5555555 0 333 88 7 1 22 111 22 66666 88 4444 5 1 1 1 5 333 6 1 44 6 1 1 1 2 0 0 0 55555 33 1 66666 1 0 3333333333 8 0000 9 2222222 99999999999999 0 000000000000 5 1 2222 1 8888 66 9 3 444444 44 888 6 1 6 555 6 000000000 1 1 5 6 55 5 5 7 55 77 666666 777777777777777777777777777777777777777 0 5 0 4 0 0000 1 1 1 0 0
lowQualScore : . . . . . . . . .. ....................... .. . . . ...... . . . ... ...... . ..... .. . . . . ... . . . ....... . . . . . . . . ... .......... ................................................................. . ......... . ....... . ... .. . . .. ... .. ..... .. .... . . . . . ... . . .. . . . . . . . . ..... .. . ..... . . .......... . .... . ....... .............. . ............ . . .... . .... .. . . ...... .. ... . . . ... . ......... . . . . .. . . . .. .. ...... ....................................... . . . . . .... . . . . .
lowQualScore : 8 9 4 9 0 0 3 7 55 00000000000000000000000 11 5 4 0 111111 6 0 0 777 000000 2 55555 44 0 0 2 6 333 4 6 6 0000000 0 5 0 0 4 0 0 4 000 8888888888 00000000000000000000000000000000000000000000000000000000000000000 3 333333333 0 3333333 7 333 33 3 0 00 000 00 55555 00 0000 5 0 0 0 0 333 7 0 33 7 0 0 0 5 2 0 0 00000 88 0 55555 0 2 8888888888 8 2222 8 5555555 22222222222222 0 777777777777 7 7 1111 4 0000 44 3 5 333333 77 333 7 0 7 333 7 333333333 0 8 2 7 77 7 7 5 00 99 444444 444444444444444444444444444444444444444 2 0 8 0 2 6666 0 7 5 8 8
consensus : TAATTTCTTGTCAGAATATGATATACGGATTTACCAATGAGCTCATTTACTACTGGCATCATAATA-TA-TT-TT-CCACATTGACTCCGTGTTTC--GA-----------------------AATA--ATCAATTTG-TTGTTCCTTGCAAAAT------GTANAATTCGCACTTGNGACGCC----ATTTTGAAAATAACATTGAC-----TGGTTTATAAC-TTTT-CACGAACTTTAAGCATATGTAAAAGACGAAAACTACAGTAGACA--T-C-GTAGTGAATGACACTTACAAACACTATTCCCACATTANTACGGATTATTAAATCGGCAAAACGTCAGT-GTTCC-TCCCCGTTACTGATATA---AAACTGTTTACAACTGAAATTCTGTTACAGATTATTGGAAGTA----------ACACTTTCAGAT--------------------A------------TATTTTTTCA----------------------TCATCTTAAAAATCAATTGTATGCATATTCAAAATGAAGAACAAATGTTGAT--TATTTTTCAATTACAGNTAACGAAAATTGT--ATTGCACTTACCGATTCAATGATAACATCATAA---ACCAGCCATATTTGTTT--GTTACAGATTTTTTTATTGAATGATTATCGAANAAAAGANNGATCTAAAGANNGTGTGTACAGATCTAAAGACAGATAAAAATATGTATTTTTTTAATTCAAATATGGTTATTTTCTAATTTTTAGTTGACGATGACACAGCTGTATACAGTTTTGATTCTTGTTTTTATCTTTTGCATACCATAAACCAACACATTCANGAATGACCTATCAAACACGNGATCATAGCTGCTATGTCAGTNGCAACACAAGTCTTCCATGTAATGTAGCT---ACCAACATAAAATCATATAAAACAAAATATTTGAAANACGGATGCAATTTATTTTATAATAAACCAAACAACCTGTGGTTGATAGANAGAAAGAAAGAAACGAANAAACAACATAGTATAACACGGGTTGCCTCCNTTCTACTTTTGAGACGACCCCCA-TATAATGTGTTTCTGACC-AAATCG-CGTGAAC--TNCAACTTTCACNACC----------GAACAAGTGGTGTTAAA--C-AATCTAATATTTTGTATGTATTTCGTCGTTATAGATAATACTTTAAATGT-------GGCAGGCATACTAGAAG-TT-TG--A-TTT-ATAGCACATGTA-TAAAAAA--GAAA---AA-CACAT-TCGTATAATAGCGTAA----ACGTCAATA-AA-A--ATG-ACTGATTTTCACGAACGACGAAAGAGG-A-AA-CACGA-A-CATTGACCTTTGCGCGAGTTCAAA-TCGATATTTTGAATAAACAAAGCAAGTATACTACC-TTT-T-AAAG-TATTCCAGCCTTTCTTTTAT---TA----ATATAAATAATTCCGAATCGAACGTCAATCTGAAATCGTGATATTGAGACC-ACAATTTCGATTT-TTCCCTGCATTTTACCAAAANAAATGGCGGC-AAAATATATTT--AT------CGTCGCTTGGGACGCTGAA-------G-G----G--------ACTATT--T--A--C-CGT-TGTTATACTAATGCGCAGTAGT----CGTCTGCATTTCATGTCATTTTAGTNGAAATTGTATGCTTTGACTACCGCATATTTGAAGTGTTTTT
Reference ( family-550 ) : TAATTTCTTGTCAGAATATGATATACGGATTTACCAATGAGCTCATTTACTACTGGCATCATAATA-TA-TT-TT-CCACATTGACTCCGTGTTTC--GA-----------------------AATA--ATCAATTTG-TTGTTCCTTGCAAAAT------GTANAATTCGCACTTGNGACGCC----ATTTTGAAAATAACATTGAC-----TGGTTTATAAC-TTTT-CACGAACTTTAAGCATATGTAAAAGACGAAAACTACAGTAGACA--T-C-GTAGTGAATGACACTTACAAACACTATTCCCACATTANTACGGATTATTAAATCGGCAAAACGTCAGT-GTTCC-TCCCCGTTACTGATATA---AAACTGTTTACAACTGAAATTCTGTTACAGATTATTGGAAGTA----------ACACTTTCAGAT--------------------A------------TATTTTTTCA----------------------TCATCTTAAAAATCAATTGTATGCATATTCAAAATGAAGAACAAATGTTGAT--TATTTTTCAATTACAGNTAACGAAAATTGT--ATTGCACTTACCGATTCAATGATAACATCATAA---ACCAGCCATATTTGTTT--GTTACAGATTTTTTTATTGAATGATTATCGAANAAAAGANNGATCTAAAGANNGTGTGTACAGATCTAAAGACAGATAAAAATATGTATTTTTTTAATTCAAATATGGTTATTTTCTAATTTTTAGTTGACGATGACACAGCTGTATACAGTTTTGATTCTTGTTTTTATCTTTTGCATACCATAAACCAACACATTCANGAATGACCTATCAAACACGNGATCATAGCTGCTATGTCAGTNGCAACACAAGTCTTCCATGTAATGTAGCT---ACCAACATAAAATCATATAAAACAAAATATTTGAAANACGGATGCAATTTATTTTATAATAAACCAAACAACCTGTGGTTGATAGANAGAAAGAAAGAAACGAANAAACAACATAGTATAACACGGGTTGCCTCCNTTCTACTTTTGAGACGACCCCCA-TATAATGTGTTTCTGACC-AAATCG-CGCGAAC--TNCAACTTTCACNACC----------GAACAAGTGGTGTTAAA--C-AATCTAATATTTTGTATGTATTTCGTCGTTATAGATAATACTTTAAATGT-------GGCAGGCATACTAGAAG-TT-TG--A-TTT-ATAGCACATGTA-TAAAAAA--GAAA---AA-CACAT-TCGTATAATAGCGTAA----ACGTCAATA-AA-A--ATG-ACTGATTTTCACGAACGACGAAAGAGG-A-AA-CACGA-A-CATTGACCTTTGCGCGAGTTCAAA-TCGATATTTTGAATAAACAAAGCAAGTATACTACC-TTT-T-AAAG-TATTCCAGCCTTTCTTTTAT---TA----ATATAAATAATTCCGAATCGAACGTCAATCTGAAATCGTGATATTGAGACC-ACAATTTCGATTT-TTCCCTGCATTTTACCAAAANAAATGGCGGC-AAAATATATTT--AT------CGTCGCTTGGGACGCTGAA-------G-G----G--------ACTATT--T--A--C-CGT-TGTTATACTAATGCGCAGTAGT----CGTCTGCATTTCATGTCATTTTAGTNGAAATTGTATGCTTTGACTACCGCATATTTGAAGTGTTTTT
gi|1 : TAATGTCTTGTCAGAAAATGATATACGGATTTACCAATGAGCTCATTTACTAATGGCATCATAATA-TA-TT-TT-CCACATTGACTCCGTGTTTC--GA-----------------------AATA--ATCAATTTG-TTGTTCCTTGCAAAAT------GTAGAATTAGCGCTTGCGACGCC----ATTCTGAAAATAACATTGAC-----TGTTTTATAAC-TTTT-CACAAACTTTAACCCTATGTAAAAGACGAAAAAT-CAATAACCT--T-CGGTAGTGAATGACACTTACAAACACTATTCCCACATCAATACAGATTATTAAGTTGGCAAAACGTCAGT-GTCCC-TCCCCGTTACTGAAAAAGACAAACTGTTTACACATGAAATTCTGTTACAGATTATTAGAAGTA----------ACACTTTTAGAT--------------------A------------TACTTTTTCA----------------------TCATCTTAAAAATCAATTGTATGCATATTCAAACTGAAGAACAAA-ATTAATAATATATTTCAATTACAGATAACGAAAATTGTAAATTGAACTTACTGATTCAATGTTAACACCATAA---ACCAGCCATATTTGTTTTGGTTACAGATTTTTTTATTGAATGATTATCAAACAAAAAACAGATCTAAAGACTGTGTGTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTTTTGATTCT--TTTTTATCTTTTGC-TATCATAAACCAACACATTCAGGAATGACCTATCAAACACAAGATCATAGTTGTTATGTCAGTTGCAACACAAGTCTTCCATATAATGTCGCT---ACCAACATAAAATCATATAAAACAAAATATTTGAAAAACAGGTGCAATTTATTTTATAATAAACCAAACAACCTGTGGTTGATAGACAGACAGAAAGCAACGAATAAAAAACATAGTATAGCACGGGTTGCCTCCATTCTA-TTTTGAGACGACCCCCA-TATAATGAGTTTCTGACCAAAATCG-CGTGAAC--TTCAACTTTCACCACC----------GAAAAAGT--TGTTCAA----AATCTGATATTTTGTATGTTTTTCGTCGTTATAAATAATACTTTAGATGT-------TGCAGGCATACTAGAAGTTT-TGATA-TTT-ATAGCACATGTA-TAAAAAAACGAAAAACAA-CACAT-TCGTATAATAGCGTAA----ACGTCAATA-AA-A--ATG-GCTGATTTTCACGAACGACGAA-----------------------GGCTTTTGCGCTAGTTCAAA-TCGATTTTTTAAATAAACAAAGCAAGTATGCTACA-TTT-T-AAAG-TATTTCAGTCTTTCGTTTAT---TA----ATATAAATAATTTTGAATCGAACGTCAATCTGATATAGTGGTATTGAAACCGAC-ATTTCCATTT-TTCTTTACATTTTACCAAAATAAATGGTGGC-AAAATATA--T--A-------CATCGCTTGGGACGCTGAA-------G-G----G--------ACTATT--T--A--C-CGT-TGCTATATTAATGCGCAATAGT----CGTCTGCATTTCATGTCATTTTAGACGAAATTGTATTTTTTGACTATCGTATATTTGAAGTGTTTTT
gi|10 : TAATTTCTTGTCAGAATATGATATACG-ATTGACCAATAAGCTCATTTACTACTGGCAGTATGATA-TA-TTCTT-CCACATTGACTCCGTATTTT--GA-----------------------GATA--
gi|12 : aaaatcaaaggcctgatgtttctgagggaagtccgactacctgaagaaattcatcaatattaggatttgggaaactaaaaaaacgtgttcaattgagttacagtacaacatcaaagcaatacagtgtcactttgacgactatatacatttaactatttaagacagtgaatataaaacatactgcataaacaaccccattagcatgaataaaatatttgccgactacgaccatacccaaacaatttgaccagaatgaaagaaatagcaatacagaatgacaacgaacaatggaaatcagttaatgtatattgcccatcacgtctttcttAAAAAAAATAGTTCC-AAAATATATTT--AT------CATCACTTGGGACGCTGAA-------G-GAGGGG--------ATTATT--TTTA--C-CGT-TGTTGTATAAATGTGCAATAGT----CGTTTGAATTTCATGTCATTTTAGTTGAAAATGTAGGTTTTGACTACCACATATTTGA--TGTTTTTcgt
gi|13 : AATTTTGATTT-TTCCCTGCATTTTGCCAAAACAAATGGTGGC-----TATATTA--AT------CATCGCTAGGGACGCTGGA-------GTG----G--------ACTATT--T----------------TACTAATGCGCAGTAGTTAGTCGTCTGCATTTCATGTCATTTTAGTAAAAATTGCACGCTTTGACTACCGCATATTTTAAGTGCTTTTtacaaaaatcacaatacaaatttggattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgctgtcaacagtataacaaaattatagaacaaaattatatttcggtctgtgccatccctatagaaggtatcgctactcacctaccaataaatgact
gi|14 : tTTT-CCAAAA-ATATAGCGGCCAAAATATATTT--AT------CGTCGCTTGCGACGCTGAAGT-----G-G----G--------A-------------------------ACCAATGCCCAGTAGC----CGTCAGCATTTC----------AGTGGAAATTG-----------TACCGCATATTTGAAGTGTTTTgctttctgtttgataaaacaaaaatcgcaacaaaatcaaatttggatcgttacatcctgtgctatggcaattgcattttaaaatgtttggaactattttatctgtcagaggaaatgaaatcgccatcatcagtataacaaa
gi|15 : A-CACAT-TCATATAATAGCGTAATTAAACATCAATAGAA-A--ATG-ATTGATTTTCA-GAATGACGAAAGAGG-A-AA-CAAGA-AACATTTACCTTTGCGCAAGTTCAAAATCGATATTTTGAATAAACAAAGCAATTACATTACC-TTTAT-AAAG-TATTCAAGCCTTTCTTTTAT---TA----ATATAAATAATTCCGAATCGAACATCAATCTGAAATCATGATATTGAGACC-ACAGTTTCAATTT-TTCCCTGCATTTTgctctccgaaagaacgaaaacaaacaatataatctgctatagcgttttgaaacttttggaactattttattggttggaggaaatgaaatcaccgtcaacagtataacaaaggttatagaacaaaagtgtaaatgggccgcacgatcactatagaaggctacgttcgccttccaagtatata
gi|16 : TTCAAGCCTTT--TTTAT---TA----ATATAAATAATTGCGTATCGAACGTCAATCTGAAATCCTGATATTGAAATC-ACAATTTAAGTTT-TTTTCTGCA----------AGAAA-GGCTGCCAAAATATATTT--AT------CGGCGCTTGGGACGCTGAA-------G-T----G--------ACTATT--T--TTTC-CAT-CGCTTTCCTAATACACAGTGGA----CGTCTGCATTTCATGTCACTTAAGTATAAATTGTATGCTTTGAC-ACTGCATATTTGAAGTGTTTTTggtggccttaatatgtttaaagggtaattaaaatgctatataattt
gi|17 : TAGTTTCTTATCAGAATATGATGTAAGGATTAACCAATGAGCTCATTTACTACTGGCATCATAATA-TA-TTATT-CCACAATGACCC--TGTTTC--AA-----------------------AATA--ATCAATTTG-TTATTCCTTGCAAAAT------GTAGAATTCGCACTTAAGACCCCATGGATTTTG---------TTGAC-----CGTCTTACAG-------CACAAA----GAGCATATATctctctgtttgatagaacaaaaatcgcaata
gi|19 : tcacttgcagttttgactatcatgtcgtttttcttC----ATTTTGAAAATAACATTGACTACCGTAGTCTATAACTTTTT-CATGAACTTTAAATGTATATCAACAATGAAAAtggaggatgacttccaatgtcctgggttgacagacatcaccggcg
gi|2 : tATTACTACGGATCAATAAATTGGCAAAACGTCAGT-GTTCC-TAACCGTTACTGATATA---AAACTGTTTACAACTGATATTATGTAACATATTATTGGAGGTA----------ACACCTTCAGAT--------------------ATTTTCGGATCATTATTTTTTCATTTATGCCTATAGATTATTTTATTATCTTAAAAAAC-ATTGTATGCATAATCAAAATGAAGAACAAAT-T--AT--TATTTTTCAATTACAGTAAATGAAA-------ATTGCACTTACTGATTCAGTGATAACATCATGA---ACCAGCCACATTTGTTT--GTTACAGA-TTTTTTATTGAATGACTATCGAAAAAAAGAACGA---AAAAAAAG-----ACAGATCTAAAGACAGATAAAAATATGTATTTTTTTAATTCAAATATGGTTATTTTCTAATTTTTAGTTGACGATGACACAGCTGTATACAGTTTTGATTCTTGTTTTTA----TTGTATACCATAAACCAACACATTCATGAATGACCTATCAAACACGTGATCATAGCTGCTATGTTAGTAGCAACA-AAGTCTTCCATGTAATGTAGCT---ACGAACATAAAATCATATGAAACAAAATATTTGAAAGATGGATGCAATTTATTTTATAATAAACCAAACAACATGTGGTTGATAGATAGGAAGAAAGAAACGAAAAAACTATATAGTATAACACGGGTTGCCTCatcgttaatccaccaagaccgtttttgtacattttacaattgtttactttttgttaattgttgcagtcagtcatctggaaagtaaacattgaaatttaaagcttcagtatgcctagaaatcaatattattgcatacatagag
gi|20 : cttggaaannnnnnnnnnCAAAAACTACAGTAGACA--TTC-ATAGTGAATGACACTTACTAACACCATTCCCACATTACTAGAGGTTATTTAATCAACAAAGCAT-ATTGGTTTC-TCCCTGTTATTGATATA---AAACTGTTTACAACTGAAATTCGGTTCGAGGTTAT
gi|21 : aaatagccttgaaaccattttattactatctatctactgttctatCGAAAACCACAGTAGACAATT-G-GTAGTGAATGACACTTACAAACACTATTCC-----TAATATGGATTATTAAATCAGCAAAACATCAGT-GTTCTATTTCCGTTACTCACATG---AAACTGCTTACAAATGAAGTCCTGTTACAGATGATTGGAAGGA----------ACACTTTCAGAT--------------------A----------------TTTTCA----------------------
gi|22 : TTGTCAAACTATGACATACGGATTTACTAATGAACTCATTTACTATAAGCATCATAATA-TA-TTATT-CCACATTGGCTCCGTGTTTC--GA-----------------------AGTA--ATCAAT----TTGTTCCTTGCAAAAT------GTATAATTTGCAT---AGAC--------------------------------TGGTTTGTATA-TTCT-AACAAACTTTAAGCATATGTAACAGgataggatcctta
gi|24 : TAATTTCTTGTCAGATT-TGATATACAGATTTACCAATGTGCTCATTTACTACTGTCATCAGAATA-CATTT-TT-CCACATTGACTCTGTGTTTC--GA-----------------------AATA--AACGATT
gi|25 : gggtaaatatgttatttatttttggagatattgtgttgtgtcgtctttcttATAT-TTGTATAATAGCGTAA----ATTTCAATA-AA-A--ATTTACTGATTTTCATGACCGACGAAAGAGG-TTAG-CACAA-A-CAATGGCCTAAGCATAAGTTCAAA-TCAATATTTTTAATAAACACAGCAAGTATAATACA-TTTCT-AAAG-T
gi|26 : T-TT-CCATATTG--------CTTC--AA-----------------------GATAGGAT---TTTGATTATTTC---CAAAATA-----GTA-AATTT---TTTGTT---CC-------TTG----CAATATTTTC-----TGGTTTATAAC-TTTTACACAAACTTTAAGCATAAGT
gi|29 : --ATTGCACTAACCGATTCAATGATAACATCATAATTAACCAGCCATATTTGTTG--GTTATAGATTTTTTTATTGAAAGATTATCca
gi|3 : AATTAAAAT-GACA----C-TTAGTGAAGGACACTTACAAAC
gi|3 : aaaaccttaatTAATTTCCTGTCACAATATGATATACAGATTTACCAATGAACTAATTTACCACTTGCATTATAATA-TA-TT-TTTCCACACTGACACCATGTTCC--AAGATATGATTTTGATTATTTCCATAATA--ATCAATTTG-TTGTTCCTTGCAACAT------GTATATTTAGCACTTGTGATGCC----ATTTTGAAAATAACATTGAC-----TGGTTTATAACTTTTT-CACAAACTTTAAACATcttaataattaaaatcaaaggcctaaatggcctgagggaaggccattaatattaggatttgggaaattgacagtatagcatcaaagcagtacagttcactttaaatgatcagtggttttgacggctaaaaaatgtcactatttaagacagtgaatataaaacatgctgcatcagcatcatcttcaccataaaatattaactgaccatgatcatactcaaacaaattgaacagaatgaaaaaatagcaataaaacttgatgacaaaccaatgaaaacaattaatgtcaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnactttaatttcctgtcacaatatgatatacagatttaccaatgaactaatttaccacttgcattataatatatttttccacactgacaccatgttccaagatatgattttgattatttccataataatcaatttgttgttccttgcaacatgtatatttagcacttgtgatgccattttgaaaataacattgactggtttataactttttcacaaactttaaacat
gi|31 : aaaaccttaataattaaaatgacacttagtgaaggacacttacaaaccttaataattaaaatcaaaggcctaaatggcctgagggaaggccattaatattaggatttgggaaattgacagtatagcatcaaagcagtacagttcactttaaatgatcagtggttttgacggctaaaaaatgtcactatttaagacagtgaatataaaacatgctgcatcagcatcatcttcaccataaaatattaactgaccatgatcatactcaaacaaattgaacagaatgaaaaaatagcaataaaacttgatgacaaaccaatgaaaacaattaatgtcaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacttTTGGGCCACTGAA-------G-G----GTGGGGTGAACTATT--TTTA--T-CGT-TGTTGTAGTAATGTGCCGTAGT----CCTATGCATTTCATG
gi|32 : ttAAA---AA-CACAT-TCTTATAATAGCGTAA----ACGTCAATA-AA-AACATG-GCTGAT
gi|4 : cAATTTCTTGTCAGATTATGATATAAGGATTTACCAATGAGCACATTTACTAATG-----ATATTA-TA-TT-TT-CCACAATGACTCTGTGTTTCTGGA-----------------------TATG--AT---TTTGATTATTTC---CGAAATAATCAAGTTCCATTCACACTTGTGTTGCC----ATTTTGAAAATAACAGTGAC-----TGGTTTATAATATTTT-CATGAACTTTAATTATTTGTAAAATGTGAAAACT
gi|5 : tgacagtattctagtcaatggagtaaaataatggggtactggtcctgaccaatttgtaggagtatttattcaattgagtcacagtataacatcgaagcagctgtcagaccacagcagaacagtgtcactttaattagtggttttgatgactaaataaatcaaactatttaagagtgattataattttttttgcataaacaacatccttttaattttcagcataaaatatcagccctggactataaccatacccaacgaattgaccagaatgaaaaaaaatagcaataaagcttgacgactaaccagggtaattaagttaatgtcttatcatttacagttttgcccattatatcgtcttccttaGTAATGTAGTTTTGACCAT--TAAAATCATATAAAACAAAATATTTGAAATAAAGAT-CAATTTAGTTGATAATAAATCAAACAGCCTATGGTAGATAGAGAGAAAGAAAGAAACGAACAAACATCATAGAATAACACAGGTTGCCTCAATTATACTTTTGAAACGACCCCCA-TATAATGTGTTTCTGACC-AAATTG-GTTGAACAATGCAAA---AAAAAAC----------AAGCAAGTGGTGTTAAATTT-TTTTTAGTCTTTTGAATGTATTTCGTCATTATAAATAATACTTTAAATGT-------GACAGGCATACTAGAAG-TTCTG--A-TTTGAAAGCACATATA-TAAAAAA--AAA--------ACAT-TTGTAAAACAGCGTAA----ATGTAAAAA-AATA--AAG-ACCGATTTTCACAAATGGCGAAAGAGA-A-AAGCACAA-A-TGTTGACGGTAGTGTGAGTTCAAA-TCAATATTTTGAATAAACATAGCAAGTGTATTACCTTTT-T-AAAG-TATTCCAACCTTACTTTAGT---TT----ATATAAATAATTCTGAATCAAACATTA--TTGAAATTGTCATATTGAGACC-ATAATCTCAATTT-TTCACAGTATTTTAgataaccag
gi|6 : TAGTATAACACGTGTTGCCTCCCTTCTACTTTTAGTACGACCCCCAATATAATGTGTTTCTAACG-ACTTCAACAC-AAC--TGCAA-----ACAATC----------GAACAAGTTGTGTTAAA--C-AATCTAATATATTGTATGTATTTCGTCATTATAGATAATAATTTAAATGTTAAATGTGGCTGGCGTACTAGAAG-T------------ATAGCACATGTA-TAAAAAA------------CACATATGGTA-AATGGCGTAA----ACGTCAATAGAA-A--ATT-ACTTATTTTCA-GAATGATAAAAGAGG-A-AA-CAAGATA-CATTTACCTTTGCGCGAATTCAAA-TCGATATTTTTAATAAACAAAGCAAGTACACTACC-TTT-TTAAAG-TATTCCAGCATTTCTTTTAT----A----ATATAAA--------------ATGTCAATCTGAAATCGTGGTTTTGATAAC-ACAGTTTCAATTT-TCCCCTGCATTTTACCAAAAT-AATGGCGGC-GTTAT-TATTCTAAT------CGTCGCTTGGGCCGCTGAAGGAGGTGG-G----G--------TCTATTTCT--A--C-CGT-TGTCATAGTAATGCGCAGTAGT----CGTCTGCATTTCATACTTTTTTATTTGAAACTGTATGCTTTGA
gi|7 : GTTGCATCCCTTCTACTTTTGAGACGACCCCCA-TAAAATGTGTTTCTGAGC-AAATTG-TGTGAAA--TTCAACTTTCACCACCGAAAAATATTGAACAAGTGGTGTTAAA--CAAATCTAATATTGTGTATGT-TTTCGTCGTTATAGTTACGACTTTAAATGT-------GGCAGGCATACTAGAAA-TTATG--ATTTT-ATAGCAAAAGTATTAAAAAG--GAAA---GATCACAT-TCGTATAAAAGCTTAG------------------------------TTTTACGAACAACGAATGAGGTA-AG-CACAA-A-CATTGCCCTTTGCGCGAGTTCAAC-TCGATATTTTGAATAAACGAAGTAGTTATACTAAC-TTT-A-AAAATTATTCCAGCCTTTCTTTTATAAGTACGAGGTATAATTAATTCCGGATCGAACGTCAATC-----TC----TAATGAGACC-ACAATTT-GATTTATTTCCTGCATCTt
gi|7 : aATTT--ATTTCCTGCATCTCTTGGGATGCTGGAAAGG---G-G----G--------A-TATT--T--G--TACATATGTTATACTAATTCGCAGTAGT----CATCTGCAATTCATGcttgggatgctggaaagggggatatttgtacatatgttatactaattcgcagtagtcatctgcaattcatg
gi|8 : agttgcatcccttctacttttgagacgacccccataaaatgtgtttctgagcaaattgtgtgaaattcaactttcaccaccgaaaaatattgaacaagtggtgttaaacaaatctaatattgtgtatgttttcgtcgttatagttacgactttaaatgtggcaggcatactagaaattatgattttatagcaaaagtattaaaaaggaaagatcacattcgtataaaagcttagttttacgaacaacgaatgaggtaagcacaaacattgccctttgcgcgagttcaactcgatattttgaataaacgaagtagttatactaactttaaaaattattccagcctttcttttataagtacgaggtataattaattccggatcgaacgtcaatctctaatgagaccacaatttgTAATTTTTTGTCATAATAT-------------ACCAGTGAGCTCATTTACTATTT---TTATAATAATT-TT-TT-CCACATTGACTCCGTGTTTC--GA-----------------------AGT
gi|9 : atcgtgacatatcagcctctttggaacacaacaaacatgacatacttttccttctaatagatattggtgatgtctattttagataaggttttttgttgatggtgtaaaataaatgagtactgaccaatttataggattacagtactgatcattgcttaagactactaaatagatttaactatttagacagtaaataatatcaaacatgctgcataaataacatcatgcaaatcttcagcataaaatattaacaaattatgatatacccaagcaaattgactagaatggaaaaaatagcaataaaacttgacgactaaccatggaaattagtcattgtctgatcattcacagttttgcccatcatgtcttggtcttttttTAATTTCTTGTCAGAATATGAT-CGCAGATTTACCAATGAGCTCATTTACTACTGGTATCATAATA-TGTTT-TT-CCACAACGATTTCGTGTTTT--GA-----------------------AATA--AACAATTTG-TTGTTCCTTGCAAAAT------GTAGAATTTGCACTTGGGATACC----AATTTGAAAATAACATTGAC-----TGGTTTATAAC-TTTT-CACAAACTTTAAGCATATGT-AAAGACGAAAA-----------A--T-C-------AAT----------AACACTATTCCCACAATATAACAGATTATTTAAACAGCAAAACGGCAGT-ATTCC-TTCCCGTTACTGATATG---AAACTGTTTACAACTGAAATTCTGTTACAGATTATTGGAAGTAATCATAAGTGATACTTTCAGATCATTATTGTTTTATTTCGGCA------------TATTCTTTCA----------------------TCATCTTGAAAATCAATTGTATGCATATTCAAAATGAAGTACAAATGTTGTT--TTTTTTTCAATTACCGGTAgt
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): AAAACTAAAAAATGAAATGAAAATAAACGAGGTAACTTAAATAAAACAAAAATCATAGTCCTGAATGACCTGAGGGATGGCTTTGCTACTTGGACAAATTCACTAATAATAGGATTTGAGCAATTGAAAAACTTGTTCGACTGAGCTACTGTACTGTGTAACTCAAAGTAGAACTGTCAACAGTGTCACTTTGATCAATGGTTTTGACGACTAAATAATTTTAGCTATCTAAGACAGTGAGTATAAAACATGCTGCATAAACAACACCTCAGCATAAAATATTAGCAGACTATGACCGTAACCAAACAAATTGACCAGAATAGAAGAAATAGCCATAAAGCTTGATGATGAACCATGGAAATCA
Unaligned ( gi|18 ): GACAGCACTCTAGATAAAGTTAAAGGCAATGTAGTAAGGAGTATTCAATTCAGTTACTGTACGCTGGCCAAAGCAGTACAGTGTCATTTTGATGACTAAATAAATTCTACTATTTAGACAATGATTATAAAATTTTAATTATAAAACATGCTGTAAAAAACAACACCCTTTTAAGTTTAGTTGGCTATGACCATACACAAACAAATTGACTAGAATGAAAATAGTAACAATA
Unaligned ( gi|23 ): CTTCAAATAATCAGTTGTTTTGACGACTAAATAAATTTATGTAACTATTTAAGACAATGAATATAAAACATGCTGTATAAACATTTTCAGCATAAAATATTAGCCGACTATGACCATACCTAAACAAAGTGATGACAAACCATGAAATCAGTTAATGTCTAATTG
Unaligned ( gi|27 ): GCACTTCAGAACCCGGTGGATTTTGCTGATCGTATTGCAGCACAAAGAGAATATATTTGAGGACGACTTCCGATGTCCTGGGTTGACAGAAACATCACCAGCG
Unaligned ( gi|28 ): CACGAAACCGACGAACGATAGATAAGTCACAATACATCATGACATAAGTCTCTTAGGAACACAACAAACACGACATACTTTTAACTTCT
Unaligned ( gi|30 ): ACAGTATAACAAAGATTACAGAGCAAAATTAAACCTCTGACAATGGCTATAGAACGCGTCGCTCCAGTCGCCTTCCAAAAA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 33333333333333333333333 1 222222 111111 11111 11 3333333 111 4444444444 55555555555555555555555555555555555555555555555555555555555555555 333333333 4444444 222 11 222 22222 11 2222 1 1 222 1 22222 1 11 22222 4444444444 3333 3333333 33333333333333 1 444444444444 1111 1 111111 111 222222222 11 111111 444444444444444444444444444444444444444 1111
lowQualScore : 0 3 4 8 2 4 0 0 55 77777777777777777777777 66 2 1 5 222222 6 4 1 888 111111 6 22222 66 5 2 0 5 888 1 5 0 1111111 1 2 1 1 1 8 8 1 444 3333333333 99999999999999999999999999999999999999999999999999999999999999999 7 000000000 1 5555555 0 333 88 7 1 22 111 22 66666 88 4444 5 1 1 1 5 333 6 1 44 6 1 1 1 2 0 0 55555 0 3 99 33 1 66666 1 0 3333333333 8 0000 9 2222222 99999999999999 0 000000000000 5 1 2222 1 8888 66 9 3 444444 44 888 6 1 6 555 6 000000000 1 1 5 6 55 5 5 7 55 77 666666 777777777777777777777777777777777777777 0 5 0 4 0 0000 1 1 1 0 0
lowQualScore : . . . . . . . . .. ....................... .. . . . ...... . . . ... ...... . ..... .. . . . . ... . . . ....... . . . . . . . . ... .......... ................................................................. . ......... . ....... . ... .. . . .. ... .. ..... .. .... . . . . . ... . . .. . . . . . . . ..... . . .. .. . ..... . . .......... . .... . ....... .............. . ............ . . .... . .... .. . . ...... .. ... . . . ... . ......... . . . . .. . . . .. .. ...... ....................................... . . . . . .... . . . . .
lowQualScore : 8 9 4 9 0 0 3 7 55 00000000000000000000000 11 5 4 0 111111 6 0 0 777 000000 2 55555 44 0 0 2 6 333 4 6 6 0000000 0 5 0 0 4 0 0 4 000 8888888888 00000000000000000000000000000000000000000000000000000000000000000 3 333333333 0 3333333 7 333 33 3 0 00 000 00 55555 00 0000 5 0 0 0 0 333 7 0 33 7 0 0 0 5 2 0 00000 0 2 00 88 0 55555 0 2 8888888888 8 2222 8 5555555 22222222222222 0 777777777777 7 7 1111 4 0000 44 3 5 333333 77 333 7 0 7 333 7 333333333 0 8 2 7 77 7 7 5 00 99 444444 444444444444444444444444444444444444444 2 0 8 0 2 6666 0 7 5 8 8
consensus : TAATTTCTTGTCAGAATATGATATACGGATTTACCAATGAGCTCATTTACTACTGGCATCATAATA-TA-TT-TT-CCACATTGACTCCGTGTTTC--GA-----------------------AATA--ATCAATTTG-TTGTTCCTTGCAAAAT------GTANAATTCGCACTTGNGACGCC----ATTTTGAAAATAACATTGAC-----TGGTTTATAAC-TTTT-CACGAACTTTAAGCATATGTAAAAGACGAAAACTACAGTAGACA--T-C-GTAGTGAATGACACTTACAAACACTATTCCCACATTANTACGGATTATTAAATCGGCAAAACGTCAGT-GTTCC-TCCCCGTTACTGATATA---AAACTGTTTACAACTGAAATTCTGTTACAGATTATTGGAAGTA----------ACACTTTCAGAT--------------------A------------TATTTTTTCA----------------------TCATCTTAAAAATCAATTGTATGCATATTCAAAATGAAGAACAAATGTTGAT--TATTTTTCAATTACAGNTAACGAAAATTGT--ATTGCACTTACCGATTCAATGATAACATCATAA---ACCAGCCATATTTGTTT--GTTACAGATTTTTTTATTGAATGATTATCGAANAAAAGANNGATCTAAAGANNGTGTGTACAGATCTAAAGACAGATAAAAATATGTATTTTTTTAATTCAAATATGGTTATTTTCTAATTTTTAGTTGACGATGACACAGCTGTATACAGTTTTGATTCTTGTTTTTATCTTTTGCATACCATAAACCAACACATTCANGAATGACCTATCAAACACGNGATCATAGCTGCTATGTCAGTNGCAACACAAGTCTTCCATGTAATGTAGCT---ACCAACATAAAATCATATAAAACAAAATATTTGAAANACGGATGCAATTTATTTTATAATAAACCAAACAACCTGTGGTTGATAGANAGAAAGAAAGAAACGAANAAACAACATAGTATAACACGGGTTGCCTCCNTTCTACTTTTGAGACGACCCCCA-TATAATGTGTTTCTGAC-----C-AAATCGCGTGAAC--TNCAACTTTCACNACC----------GAACAAGTGGTGTTAAA--C-AATCTAATATTTTGTATGTATTTCGTCGTTATAGATAATACTTTAAATGT-------GGCAGGCATACTAGAAG-TT-TG--A-TTT-ATAGCACATGTA-TAAAAAA--GAAA---AA-CACAT-TCGTATAATAGCGTAA----ACGTCAATA-AA-A--ATG-ACTGATTTTCACGAACGACGAAAGAGG-A-AA-CACGA-A-CATTGACCTTTGCGCGAGTTCAAA-TCGATATTTTGAATAAACAAAGCAAGTATACTACC-TTT-T-AAAG-TATTCCAGCCTTTCTTTTAT---TA----ATATAAATAATTCCGAATCGAACGTCAATCTGAAATCGTGATATTGAGACC-ACAATTTCGATTT-TTCCCTGCATTTTACCAAAANAAATGGCGGC-AAAATATATTT--AT------CGTCGCTTGGGACGCTGAA-------G-G----G--------ACTATT--T--A--C-CGT-TGTTATACTAATGCGCAGTAGT----CGTCTGCATTTCATGTCATTTTAGTNGAAATTGTATGCTTTGACTACCGCATATTTGAAGTGTTTTT
Reference ( family-550 ) : TAATTTCTTGTCAGAATATGATATACGGATTTACCAATGAGCTCATTTACTACTGGCATCATAATA-TA-TT-TT-CCACATTGACTCCGTGTTTC--GA-----------------------AATA--ATCAATTTG-TTGTTCCTTGCAAAAT------GTANAATTCGCACTTGNGACGCC----ATTTTGAAAATAACATTGAC-----TGGTTTATAAC-TTTT-CACGAACTTTAAGCATATGTAAAAGACGAAAACTACAGTAGACA--T-C-GTAGTGAATGACACTTACAAACACTATTCCCACATTANTACGGATTATTAAATCGGCAAAACGTCAGT-GTTCC-TCCCCGTTACTGATATA---AAACTGTTTACAACTGAAATTCTGTTACAGATTATTGGAAGTA----------ACACTTTCAGAT--------------------A------------TATTTTTTCA----------------------TCATCTTAAAAATCAATTGTATGCATATTCAAAATGAAGAACAAATGTTGAT--TATTTTTCAATTACAGNTAACGAAAATTGT--ATTGCACTTACCGATTCAATGATAACATCATAA---ACCAGCCATATTTGTTT--GTTACAGATTTTTTTATTGAATGATTATCGAANAAAAGANNGATCTAAAGANNGTGTGTACAGATCTAAAGACAGATAAAAATATGTATTTTTTTAATTCAAATATGGTTATTTTCTAATTTTTAGTTGACGATGACACAGCTGTATACAGTTTTGATTCTTGTTTTTATCTTTTGCATACCATAAACCAACACATTCANGAATGACCTATCAAACACGNGATCATAGCTGCTATGTCAGTNGCAACACAAGTCTTCCATGTAATGTAGCT---ACCAACATAAAATCATATAAAACAAAATATTTGAAANACGGATGCAATTTATTTTATAATAAACCAAACAACCTGTGGTTGATAGANAGAAAGAAAGAAACGAANAAACAACATAGTATAACACGGGTTGCCTCCNTTCTACTTTTGAGACGACCCCCA-TATAATGTGTTTCTGAC-----C-AAATCGCGTGAAC--TNCAACTTTCACNACC----------GAACAAGTGGTGTTAAA--C-AATCTAATATTTTGTATGTATTTCGTCGTTATAGATAATACTTTAAATGT-------GGCAGGCATACTAGAAG-TT-TG--A-TTT-ATAGCACATGTA-TAAAAAA--GAAA---AA-CACAT-TCGTATAATAGCGTAA----ACGTCAATA-AA-A--ATG-ACTGATTTTCACGAACGACGAAAGAGG-A-AA-CACGA-A-CATTGACCTTTGCGCGAGTTCAAA-TCGATATTTTGAATAAACAAAGCAAGTATACTACC-TTT-T-AAAG-TATTCCAGCCTTTCTTTTAT---TA----ATATAAATAATTCCGAATCGAACGTCAATCTGAAATCGTGATATTGAGACC-ACAATTTCGATTT-TTCCCTGCATTTTACCAAAANAAATGGCGGC-AAAATATATTT--AT------CGTCGCTTGGGACGCTGAA-------G-G----G--------ACTATT--T--A--C-CGT-TGTTATACTAATGCGCAGTAGT----CGTCTGCATTTCATGTCATTTTAGTNGAAATTGTATGCTTTGACTACCGCATATTTGAAGTGTTTTT
gi|1 : TAATGTCTTGTCAGAAAATGATATACGGATTTACCAATGAGCTCATTTACTAATGGCATCATAATA-TA-TT-TT-CCACATTGACTCCGTGTTTC--GA-----------------------AATA--ATCAATTTG-TTGTTCCTTGCAAAAT------GTAGAATTAGCGCTTGCGACGCC----ATTCTGAAAATAACATTGAC-----TGTTTTATAAC-TTTT-CACAAACTTTAACCCTATGTAAAAGACGAAAAAT-CAATAACCT--T-CGGTAGTGAATGACACTTACAAACACTATTCCCACATCAATACAGATTATTAAGTTGGCAAAACGTCAGT-GTCCC-TCCCCGTTACTGAAAAAGACAAACTGTTTACACATGAAATTCTGTTACAGATTATTAGAAGTA----------ACACTTTTAGAT--------------------A------------TACTTTTTCA----------------------TCATCTTAAAAATCAATTGTATGCATATTCAAACTGAAGAACAAA-ATTAATAATATATTTCAATTACAGATAACGAAAATTGTAAATTGAACTTACTGATTCAATGTTAACACCATAA---ACCAGCCATATTTGTTTTGGTTACAGATTTTTTTATTGAATGATTATCAAACAAAAAACAGATCTAAAGACTGTGTGTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTTTTGATTCT--TTTTTATCTTTTGC-TATCATAAACCAACACATTCAGGAATGACCTATCAAACACAAGATCATAGTTGTTATGTCAGTTGCAACACAAGTCTTCCATATAATGTCGCT---ACCAACATAAAATCATATAAAACAAAATATTTGAAAAACAGGTGCAATTTATTTTATAATAAACCAAACAACCTGTGGTTGATAGACAGACAGAAAGCAACGAATAAAAAACATAGTATAGCACGGGTTGCCTCCATTCTA-TTTTGAGACGACCCCCA-TATAATGAGTTTCTGAC-----CAAAATCGCGTGAAC--TTCAACTTTCACCACC----------GAAAAAGT--TGTTCAA----AATCTGATATTTTGTATGTTTTTCGTCGTTATAAATAATACTTTAGATGT-------TGCAGGCATACTAGAAGTTT-TGATA-TTT-ATAGCACATGTA-TAAAAAAACGAAAAACAA-CACAT-TCGTATAATAGCGTAA----ACGTCAATA-AA-A--ATG-GCTGATTTTCACGAACGACGAA-----------------------GGCTTTTGCGCTAGTTCAAA-TCGATTTTTTAAATAAACAAAGCAAGTATGCTACA-TTT-T-AAAG-TATTTCAGTCTTTCGTTTAT---TA----ATATAAATAATTTTGAATCGAACGTCAATCTGATATAGTGGTATTGAAACCGAC-ATTTCCATTT-TTCTTTACATTTTACCAAAATAAATGGTGGC-AAAATATA--T--A-------CATCGCTTGGGACGCTGAA-------G-G----G--------ACTATT--T--A--C-CGT-TGCTATATTAATGCGCAATAGT----CGTCTGCATTTCATGTCATTTTAGACGAAATTGTATTTTTTGACTATCGTATATTTGAAGTGTTTTT
gi|10 : TAATTTCTTGTCAGAATATGATATACG-ATTGACCAATAAGCTCATTTACTACTGGCAGTATGATA-TA-TTCTT-CCACATTGACTCCGTATTTT--GA-----------------------GATA--
gi|12 : aaaatcaaaggcctgatgtttctgagggaagtccgactacctgaagaaattcatcaatattaggatttgggaaactaaaaaaacgtgttcaattgagttacagtacaacatcaaagcaatacagtgtcactttgacgactatatacatttaactatttaagacagtgaatataaaacatactgcataaacaaccccattagcatgaataaaatatttgccgactacgaccatacccaaacaatttgaccagaatgaaagaaatagcaatacagaatgacaacgaacaatggaaatcagttaatgtatattgcccatcacgtctttcttAAAAAAAATAGTTCC-AAAATATATTT--AT------CATCACTTGGGACGCTGAA-------G-GAGGGG--------ATTATT--TTTA--C-CGT-TGTTGTATAAATGTGCAATAGT----CGTTTGAATTTCATGTCATTTTAGTTGAAAATGTAGGTTTTGACTACCACATATTTGA--TGTTTTTcgt
gi|13 : AATTTTGATTT-TTCCCTGCATTTTGCCAAAACAAATGGTGGC-----TATATTA--AT------CATCGCTAGGGACGCTGGA-------GTG----G--------ACTATT--T----------------TACTAATGCGCAGTAGTTAGTCGTCTGCATTTCATGTCATTTTAGTAAAAATTGCACGCTTTGACTACCGCATATTTTAAGTGCTTTTtacaaaaatcacaatacaaatttggattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgctgtcaacagtataacaaaattatagaacaaaattatatttcggtctgtgccatccctatagaaggtatcgctactcacctaccaataaatgact
gi|14 : tTTT-CCAAAA-ATATAGCGGCCAAAATATATTT--AT------CGTCGCTTGCGACGCTGAAGT-----G-G----G--------A-------------------------ACCAATGCCCAGTAGC----CGTCAGCATTTC----------AGTGGAAATTG-----------TACCGCATATTTGAAGTGTTTTgctttctgtttgataaaacaaaaatcgcaacaaaatcaaatttggatcgttacatcctgtgctatggcaattgcattttaaaatgtttggaactattttatctgtcagaggaaatgaaatcgccatcatcagtataacaaa
gi|15 : A-CACAT-TCATATAATAGCGTAATTAAACATCAATAGAA-A--ATG-ATTGATTTTCA-GAATGACGAAAGAGG-A-AA-CAAGA-AACATTTACCTTTGCGCAAGTTCAAAATCGATATTTTGAATAAACAAAGCAATTACATTACC-TTTAT-AAAG-TATTCAAGCCTTTCTTTTAT---TA----ATATAAATAATTCCGAATCGAACATCAATCTGAAATCATGATATTGAGACC-ACAGTTTCAATTT-TTCCCTGCATTTTgctctccgaaagaacgaaaacaaacaatataatctgctatagcgttttgaaacttttggaactattttattggttggaggaaatgaaatcaccgtcaacagtataacaaaggttatagaacaaaagtgtaaatgggccgcacgatcactatagaaggctacgttcgccttccaagtatata
gi|16 : TTCAAGCCTTT--TTTAT---TA----ATATAAATAATTGCGTATCGAACGTCAATCTGAAATCCTGATATTGAAATC-ACAATTTAAGTTT-TTTTCTGCA----------AGAAA-GGCTGCCAAAATATATTT--AT------CGGCGCTTGGGACGCTGAA-------G-T----G--------ACTATT--T--TTTC-CAT-CGCTTTCCTAATACACAGTGGA----CGTCTGCATTTCATGTCACTTAAGTATAAATTGTATGCTTTGAC-ACTGCATATTTGAAGTGTTTTTggtggccttaatatgtttaaagggtaattaaaatgctatataattt
gi|17 : TAGTTTCTTATCAGAATATGATGTAAGGATTAACCAATGAGCTCATTTACTACTGGCATCATAATA-TA-TTATT-CCACAATGACCC--TGTTTC--AA-----------------------AATA--ATCAATTTG-TTATTCCTTGCAAAAT------GTAGAATTCGCACTTAAGACCCCATGGATTTTG---------TTGAC-----CGTCTTACAG-------CACAAA----GAGCATATATctctctgtttgatagaacaaaaatcgcaata
gi|19 : tcacttgcagttttgactatcatgtcgtttttcttC----ATTTTGAAAATAACATTGACTACCGTAGTCTATAACTTTTT-CATGAACTTTAAATGTATATCAACAATGAAAAtggaggatgacttccaatgtcctgggttgacagacatcaccggcg
gi|2 : tATTACTACGGATCAATAAATTGGCAAAACGTCAGT-GTTCC-TAACCGTTACTGATATA---AAACTGTTTACAACTGATATTATGTAACATATTATTGGAGGTA----------ACACCTTCAGAT--------------------ATTTTCGGATCATTATTTTTTCATTTATGCCTATAGATTATTTTATTATCTTAAAAAAC-ATTGTATGCATAATCAAAATGAAGAACAAAT-T--AT--TATTTTTCAATTACAGTAAATGAAA-------ATTGCACTTACTGATTCAGTGATAACATCATGA---ACCAGCCACATTTGTTT--GTTACAGA-TTTTTTATTGAATGACTATCGAAAAAAAGAACGA---AAAAAAAG-----ACAGATCTAAAGACAGATAAAAATATGTATTTTTTTAATTCAAATATGGTTATTTTCTAATTTTTAGTTGACGATGACACAGCTGTATACAGTTTTGATTCTTGTTTTTA----TTGTATACCATAAACCAACACATTCATGAATGACCTATCAAACACGTGATCATAGCTGCTATGTTAGTAGCAACA-AAGTCTTCCATGTAATGTAGCT---ACGAACATAAAATCATATGAAACAAAATATTTGAAAGATGGATGCAATTTATTTTATAATAAACCAAACAACATGTGGTTGATAGATAGGAAGAAAGAAACGAAAAAACTATATAGTATAACACGGGTTGCCTCatcgttaatccaccaagaccgtttttgtacattttacaattgtttactttttgttaattgttgcagtcagtcatctggaaagtaaacattgaaatttaaagcttcagtatgcctagaaatcaatattattgcatacatagag
gi|20 : cttggaaannnnnnnnnnCAAAAACTACAGTAGACA--TTC-ATAGTGAATGACACTTACTAACACCATTCCCACATTACTAGAGGTTATTTAATCAACAAAGCAT-ATTGGTTTC-TCCCTGTTATTGATATA---AAACTGTTTACAACTGAAATTCGGTTCGAGGTTAT
gi|21 : aaatagccttgaaaccattttattactatctatctactgttctatCGAAAACCACAGTAGACAATT-G-GTAGTGAATGACACTTACAAACACTATTCC-----TAATATGGATTATTAAATCAGCAAAACATCAGT-GTTCTATTTCCGTTACTCACATG---AAACTGCTTACAAATGAAGTCCTGTTACAGATGATTGGAAGGA----------ACACTTTCAGAT--------------------A----------------TTTTCA----------------------
gi|22 : TTGTCAAACTATGACATACGGATTTACTAATGAACTCATTTACTATAAGCATCATAATA-TA-TTATT-CCACATTGGCTCCGTGTTTC--GA-----------------------AGTA--ATCAAT----TTGTTCCTTGCAAAAT------GTATAATTTGCAT---AGAC--------------------------------TGGTTTGTATA-TTCT-AACAAACTTTAAGCATATGTAACAGgataggatcctta
gi|24 : TAATTTCTTGTCAGATT-TGATATACAGATTTACCAATGTGCTCATTTACTACTGTCATCAGAATA-CATTT-TT-CCACATTGACTCTGTGTTTC--GA-----------------------AATA--AACGATT
gi|25 : gggtaaatatgttatttatttttggagatattgtgttgtgtcgtctttcttATAT-TTGTATAATAGCGTAA----ATTTCAATA-AA-A--ATTTACTGATTTTCATGACCGACGAAAGAGG-TTAG-CACAA-A-CAATGGCCTAAGCATAAGTTCAAA-TCAATATTTTTAATAAACACAGCAAGTATAATACA-TTTCT-AAAG-T
gi|26 : T-TT-CCATATTG--------CTTC--AA-----------------------GATAGGAT---TTTGATTATTTC---CAAAATA-----GTA-AATTT---TTTGTT---CC-------TTG----CAATATTTTC-----TGGTTTATAAC-TTTTACACAAACTTTAAGCATAAGT
gi|29 : --ATTGCACTAACCGATTCAATGATAACATCATAATTAACCAGCCATATTTGTTG--GTTATAGATTTTTTTATTGAAAGATTATCca
gi|3 : AATTAAAAT-GACA----C-TTAGTGAAGGACACTTACAAAC
gi|3 : aaaaccttaatTAATTTCCTGTCACAATATGATATACAGATTTACCAATGAACTAATTTACCACTTGCATTATAATA-TA-TT-TTTCCACACTGACACCATGTTCC--AAGATATGATTTTGATTATTTCCATAATA--ATCAATTTG-TTGTTCCTTGCAACAT------GTATATTTAGCACTTGTGATGCC----ATTTTGAAAATAACATTGAC-----TGGTTTATAACTTTTT-CACAAACTTTAAACATcttaataattaaaatcaaaggcctaaatggcctgagggaaggccattaatattaggatttgggaaattgacagtatagcatcaaagcagtacagttcactttaaatgatcagtggttttgacggctaaaaaatgtcactatttaagacagtgaatataaaacatgctgcatcagcatcatcttcaccataaaatattaactgaccatgatcatactcaaacaaattgaacagaatgaaaaaatagcaataaaacttgatgacaaaccaatgaaaacaattaatgtcaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnactttaatttcctgtcacaatatgatatacagatttaccaatgaactaatttaccacttgcattataatatatttttccacactgacaccatgttccaagatatgattttgattatttccataataatcaatttgttgttccttgcaacatgtatatttagcacttgtgatgccattttgaaaataacattgactggtttataactttttcacaaactttaaacat
gi|31 : aaaaccttaataattaaaatgacacttagtgaaggacacttacaaaccttaataattaaaatcaaaggcctaaatggcctgagggaaggccattaatattaggatttgggaaattgacagtatagcatcaaagcagtacagttcactttaaatgatcagtggttttgacggctaaaaaatgtcactatttaagacagtgaatataaaacatgctgcatcagcatcatcttcaccataaaatattaactgaccatgatcatactcaaacaaattgaacagaatgaaaaaatagcaataaaacttgatgacaaaccaatgaaaacaattaatgtcaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacttTTGGGCCACTGAA-------G-G----GTGGGGTGAACTATT--TTTA--T-CGT-TGTTGTAGTAATGTGCCGTAGT----CCTATGCATTTCATG
gi|32 : ttAAA---AA-CACAT-TCTTATAATAGCGTAA----ACGTCAATA-AA-AACATG-GCTGAT
gi|4 : cAATTTCTTGTCAGATTATGATATAAGGATTTACCAATGAGCACATTTACTAATG-----ATATTA-TA-TT-TT-CCACAATGACTCTGTGTTTCTGGA-----------------------TATG--AT---TTTGATTATTTC---CGAAATAATCAAGTTCCATTCACACTTGTGTTGCC----ATTTTGAAAATAACAGTGAC-----TGGTTTATAATATTTT-CATGAACTTTAATTATTTGTAAAATGTGAAAACT
gi|5 : tgacagtattctagtcaatggagtaaaataatggggtactggtcctgaccaatttgtaggagtatttattcaattgagtcacagtataacatcgaagcagctgtcagaccacagcagaacagtgtcactttaattagtggttttgatgactaaataaatcaaactatttaagagtgattataattttttttgcataaacaacatccttttaattttcagcataaaatatcagccctggactataaccatacccaacgaattgaccagaatgaaaaaaaatagcaataaagcttgacgactaaccagggtaattaagttaatgtcttatcatttacagttttgcccattatatcgtcttccttaGTAATGTAGTTTTGACCAT--TAAAATCATATAAAACAAAATATTTGAAATAAAGAT-CAATTTAGTTGATAATAAATCAAACAGCCTATGGTAGATAGAGAGAAAGAAAGAAACGAACAAACATCATAGAATAACACAGGTTGCCTCAATTATACTTTTGAAACGACCCCCA-TATAATGTGTTTCTGAC-----C-AAATTGGTTGAACAATGCAAA---AAAAAAC----------AAGCAAGTGGTGTTAAATTT-TTTTTAGTCTTTTGAATGTATTTCGTCATTATAAATAATACTTTAAATGT-------GACAGGCATACTAGAAG-TTCTG--A-TTTGAAAGCACATATA-TAAAAAA--AAA--------ACAT-TTGTAAAACAGCGTAA----ATGTAAAAA-AATA--AAG-ACCGATTTTCACAAATGGCGAAAGAGA-A-AAGCACAA-A-TGTTGACGGTAGTGTGAGTTCAAA-TCAATATTTTGAATAAACATAGCAAGTGTATTACCTTTT-T-AAAG-TATTCCAACCTTACTTTAGT---TT----ATATAAATAATTCTGAATCAAACATTA--TTGAAATTGTCATATTGAGACC-ATAATCTCAATTT-TTCACAGTATTTTAgataaccag
gi|6 : TAGTATAACACGTGTTGCCTCCCTTCTACTTTTAGTACGACCCCCAATATAATGTGTTTCTAACGACTTC-AA--CAC---AAC--TGCAA-----ACAATC----------GAACAAGTTGTGTTAAA--C-AATCTAATATATTGTATGTATTTCGTCATTATAGATAATAATTTAAATGTTAAATGTGGCTGGCGTACTAGAAG-T------------ATAGCACATGTA-TAAAAAA------------CACATATGGTA-AATGGCGTAA----ACGTCAATAGAA-A--ATT-ACTTATTTTCA-GAATGATAAAAGAGG-A-AA-CAAGATA-CATTTACCTTTGCGCGAATTCAAA-TCGATATTTTTAATAAACAAAGCAAGTACACTACC-TTT-TTAAAG-TATTCCAGCATTTCTTTTAT----A----ATATAAA--------------ATGTCAATCTGAAATCGTGGTTTTGATAAC-ACAGTTTCAATTT-TCCCCTGCATTTTACCAAAAT-AATGGCGGC-GTTAT-TATTCTAAT------CGTCGCTTGGGCCGCTGAAGGAGGTGG-G----G--------TCTATTTCT--A--C-CGT-TGTCATAGTAATGCGCAGTAGT----CGTCTGCATTTCATACTTTTTTATTTGAAACTGTATGCTTTGA
gi|7 : GTTGCATCCCTTCTACTTTTGAGACGACCCCCA-TAAAATGTGTTTCTGAG-----C-AAATTGTGTGAAA--TTCAACTTTCACCACCGAAAAATATTGAACAAGTGGTGTTAAA--CAAATCTAATATTGTGTATGT-TTTCGTCGTTATAGTTACGACTTTAAATGT-------GGCAGGCATACTAGAAA-TTATG--ATTTT-ATAGCAAAAGTATTAAAAAG--GAAA---GATCACAT-TCGTATAAAAGCTTAG------------------------------TTTTACGAACAACGAATGAGGTA-AG-CACAA-A-CATTGCCCTTTGCGCGAGTTCAAC-TCGATATTTTGAATAAACGAAGTAGTTATACTAAC-TTT-A-AAAATTATTCCAGCCTTTCTTTTATAAGTACGAGGTATAATTAATTCCGGATCGAACGTCAATC-----TC----TAATGAGACC-ACAATTT-GATTTATTTCCTGCATCTt
gi|7 : aATTT--ATTTCCTGCATCTCTTGGGATGCTGGAAAGG---G-G----G--------A-TATT--T--G--TACATATGTTATACTAATTCGCAGTAGT----CATCTGCAATTCATGcttgggatgctggaaagggggatatttgtacatatgttatactaattcgcagtagtcatctgcaattcatg
gi|8 : agttgcatcccttctacttttgagacgacccccataaaatgtgtttctgagcaaattgtgtgaaattcaactttcaccaccgaaaaatattgaacaagtggtgttaaacaaatctaatattgtgtatgttttcgtcgttatagttacgactttaaatgtggcaggcatactagaaattatgattttatagcaaaagtattaaaaaggaaagatcacattcgtataaaagcttagttttacgaacaacgaatgaggtaagcacaaacattgccctttgcgcgagttcaactcgatattttgaataaacgaagtagttatactaactttaaaaattattccagcctttcttttataagtacgaggtataattaattccggatcgaacgtcaatctctaatgagaccacaatttgTAATTTTTTGTCATAATAT-------------ACCAGTGAGCTCATTTACTATTT---TTATAATAATT-TT-TT-CCACATTGACTCCGTGTTTC--GA-----------------------AGT
gi|9 : atcgtgacatatcagcctctttggaacacaacaaacatgacatacttttccttctaatagatattggtgatgtctattttagataaggttttttgttgatggtgtaaaataaatgagtactgaccaatttataggattacagtactgatcattgcttaagactactaaatagatttaactatttagacagtaaataatatcaaacatgctgcataaataacatcatgcaaatcttcagcataaaatattaacaaattatgatatacccaagcaaattgactagaatggaaaaaatagcaataaaacttgacgactaaccatggaaattagtcattgtctgatcattcacagttttgcccatcatgtcttggtcttttttTAATTTCTTGTCAGAATATGAT-CGCAGATTTACCAATGAGCTCATTTACTACTGGTATCATAATA-TGTTT-TT-CCACAACGATTTCGTGTTTT--GA-----------------------AATA--AACAATTTG-TTGTTCCTTGCAAAAT------GTAGAATTTGCACTTGGGATACC----AATTTGAAAATAACATTGAC-----TGGTTTATAAC-TTTT-CACAAACTTTAAGCATATGT-AAAGACGAAAA-----------A--T-C-------AAT----------AACACTATTCCCACAATATAACAGATTATTTAAACAGCAAAACGGCAGT-ATTCC-TTCCCGTTACTGATATG---AAACTGTTTACAACTGAAATTCTGTTACAGATTATTGGAAGTAATCATAAGTGATACTTTCAGATCATTATTGTTTTATTTCGGCA------------TATTCTTTCA----------------------TCATCTTGAAAATCAATTGTATGCATATTCAAAATGAAGTACAAATGTTGTT--TTTTTTTCAATTACCGGTAgt
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): AAAACTAAAAAATGAAATGAAAATAAACGAGGTAACTTAAATAAAACAAAAATCATAGTCCTGAATGACCTGAGGGATGGCTTTGCTACTTGGACAAATTCACTAATAATAGGATTTGAGCAATTGAAAAACTTGTTCGACTGAGCTACTGTACTGTGTAACTCAAAGTAGAACTGTCAACAGTGTCACTTTGATCAATGGTTTTGACGACTAAATAATTTTAGCTATCTAAGACAGTGAGTATAAAACATGCTGCATAAACAACACCTCAGCATAAAATATTAGCAGACTATGACCGTAACCAAACAAATTGACCAGAATAGAAGAAATAGCCATAAAGCTTGATGATGAACCATGGAAATCA
Unaligned ( gi|18 ): GACAGCACTCTAGATAAAGTTAAAGGCAATGTAGTAAGGAGTATTCAATTCAGTTACTGTACGCTGGCCAAAGCAGTACAGTGTCATTTTGATGACTAAATAAATTCTACTATTTAGACAATGATTATAAAATTTTAATTATAAAACATGCTGTAAAAAACAACACCCTTTTAAGTTTAGTTGGCTATGACCATACACAAACAAATTGACTAGAATGAAAATAGTAACAATA
Unaligned ( gi|23 ): CTTCAAATAATCAGTTGTTTTGACGACTAAATAAATTTATGTAACTATTTAAGACAATGAATATAAAACATGCTGTATAAACATTTTCAGCATAAAATATTAGCCGACTATGACCATACCTAAACAAAGTGATGACAAACCATGAAATCAGTTAATGTCTAATTG
Unaligned ( gi|27 ): GCACTTCAGAACCCGGTGGATTTTGCTGATCGTATTGCAGCACAAAGAGAATATATTTGAGGACGACTTCCGATGTCCTGGGTTGACAGAAACATCACCAGCG
Unaligned ( gi|28 ): CACGAAACCGACGAACGATAGATAAGTCACAATACATCATGACATAAGTCTCTTAGGAACACAACAAACACGACATACTTTTAACTTCT
Unaligned ( gi|30 ): ACAGTATAACAAAGATTACAGAGCAAAATTAAACCTCTGACAATGGCTATAGAACGCGTCGCTCCAGTCGCCTTCCAAAAA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 33333333333333333333333 1 222222 111111 11111 11 3333333 111 4444444444 55555555555555555555555555555555555555555555555555555555555555555 333333333 4444444 222 11 222 22222 11 2222 1 1 222 1 22222 1 11 22222 4444444444 3333 3333333 33333333333333 1 444444444444 1111 1 111111 111 222222222 11 111111 444444444444444444444444444444444444444 1111
lowQualScore : 0 3 4 8 2 4 0 0 55 77777777777777777777777 66 2 1 5 222222 6 4 1 888 111111 6 22222 66 5 2 0 5 888 1 5 0 1111111 1 2 1 1 1 8 8 1 444 3333333333 99999999999999999999999999999999999999999999999999999999999999999 7 000000000 1 5555555 0 333 88 7 1 22 111 22 66666 88 4444 5 1 1 1 5 333 6 1 44 6 1 1 1 2 0 0 55555 0 3 99 33 1 66666 1 0 3333333333 8 0000 9 2222222 99999999999999 0 000000000000 5 1 2222 1 8888 66 9 3 444444 44 888 6 1 6 555 6 000000000 1 1 5 6 55 5 5 7 55 77 666666 777777777777777777777777777777777777777 0 5 0 4 0 0000 1 1 1 0 0
lowQualScore : . . . . . . . . .. ....................... .. . . . ...... . . . ... ...... . ..... .. . . . . ... . . . ....... . . . . . . . . ... .......... ................................................................. . ......... . ....... . ... .. . . .. ... .. ..... .. .... . . . . . ... . . .. . . . . . . . ..... . . .. .. . ..... . . .......... . .... . ....... .............. . ............ . . .... . .... .. . . ...... .. ... . . . ... . ......... . . . . .. . . . .. .. ...... ....................................... . . . . . .... . . . . .
lowQualScore : 8 9 4 9 0 0 3 7 55 00000000000000000000000 11 5 4 0 111111 6 0 0 777 000000 2 55555 44 0 0 2 6 333 4 6 6 0000000 0 5 0 0 4 0 0 4 000 8888888888 00000000000000000000000000000000000000000000000000000000000000000 3 333333333 0 3333333 7 333 33 3 0 00 000 00 55555 00 0000 5 0 0 0 0 333 7 0 33 7 0 0 0 5 2 0 00000 0 2 00 88 0 55555 0 2 8888888888 8 2222 8 5555555 22222222222222 0 777777777777 7 7 1111 4 0000 44 3 5 333333 77 333 7 0 7 333 7 333333333 0 8 2 7 77 7 7 5 00 99 444444 444444444444444444444444444444444444444 2 0 8 0 2 6666 0 7 5 8 8
consensus : TAATTTCTTGTCAGAATATGATATACGGATTTACCAATGAGCTCATTTACTACTGGCATCATAATA-TA-TT-TT-CCACATTGACTCCGTGTTTC--GA-----------------------AATA--ATCAATTTG-TTGTTCCTTGCAAAAT------GTANAATTCGCACTTGNGACGCC----ATTTTGAAAATAACATTGAC-----TGGTTTATAAC-TTTT-CACGAACTTTAAGCATATGTAAAAGACGAAAACTACAGTAGACA--T-C-GTAGTGAATGACACTTACAAACACTATTCCCACATTANTACGGATTATTAAATCGGCAAAACGTCAGT-GTTCC-TCCCCGTTACTGATATA---AAACTGTTTACAACTGAAATTCTGTTACAGATTATTGGAAGTA----------ACACTTTCAGAT--------------------A------------TATTTTTTCA----------------------TCATCTTAAAAATCAATTGTATGCATATTCAAAATGAAGAACAAATGTTGAT--TATTTTTCAATTACAGNTAACGAAAATTGT--ATTGCACTTACCGATTCAATGATAACATCATAA---ACCAGCCATATTTGTTT--GTTACAGATTTTTTTATTGAATGATTATCGAANAAAAGANNGATCTAAAGANNGTGTGTACAGATCTAAAGACAGATAAAAATATGTATTTTTTTAATTCAAATATGGTTATTTTCTAATTTTTAGTTGACGATGACACAGCTGTATACAGTTTTGATTCTTGTTTTTATCTTTTGCATACCATAAACCAACACATTCANGAATGACCTATCAAACACGNGATCATAGCTGCTATGTCAGTNGCAACACAAGTCTTCCATGTAATGTAGCT---ACCAACATAAAATCATATAAAACAAAATATTTGAAANACGGATGCAATTTATTTTATAATAAACCAAACAACCTGTGGTTGATAGANAGAAAGAAAGAAACGAANAAACAACATAGTATAACACGGGTTGCCTCCNTTCTACTTTTGAGACGACCCCCA-TATAATGTGTTTCTGAC-----C-AAATCGCGTGAAC--TNCAACTTTCACNACC----------GAACAAGTGGTGTTAAA--C-AATCTAATATTTTGTATGTATTTCGTCGTTATAGATAATACTTTAAATGT-------GGCAGGCATACTAGAAG-TT-TG--A-TTT-ATAGCACATGTA-TAAAAAA--GAAA---AA-CACAT-TCGTATAATAGCGTAA----ACGTCAATA-AA-A--ATG-ACTGATTTTCACGAACGACGAAAGAGG-A-AA-CACGA-A-CATTGACCTTTGCGCGAGTTCAAA-TCGATATTTTGAATAAACAAAGCAAGTATACTACC-TTT-T-AAAG-TATTCCAGCCTTTCTTTTAT---TA----ATATAAATAATTCCGAATCGAACGTCAATCTGAAATCGTGATATTGAGACC-ACAATTTCGATTT-TTCCCTGCATTTTACCAAAANAAATGGCGGC-AAAATATATTT--AT------CGTCGCTTGGGACGCTGAA-------G-G----G--------ACTATT--T--A--C-CGT-TGTTATACTAATGCGCAGTAGT----CGTCTGCATTTCATGTCATTTTAGTNGAAATTGTATGCTTTGACTACCGCATATTTGAAGTGTTTTT
Reference ( family-550 ) : TAATTTCTTGTCAGAATATGATATACGGATTTACCAATGAGCTCATTTACTACTGGCATCATAATA-TA-TT-TT-CCACATTGACTCCGTGTTTC--GA-----------------------AATA--ATCAATTTG-TTGTTCCTTGCAAAAT------GTANAATTCGCACTTGNGACGCC----ATTTTGAAAATAACATTGAC-----TGGTTTATAAC-TTTT-CACGAACTTTAAGCATATGTAAAAGACGAAAACTACAGTAGACA--T-C-GTAGTGAATGACACTTACAAACACTATTCCCACATTANTACGGATTATTAAATCGGCAAAACGTCAGT-GTTCC-TCCCCGTTACTGATATA---AAACTGTTTACAACTGAAATTCTGTTACAGATTATTGGAAGTA----------ACACTTTCAGAT--------------------A------------TATTTTTTCA----------------------TCATCTTAAAAATCAATTGTATGCATATTCAAAATGAAGAACAAATGTTGAT--TATTTTTCAATTACAGNTAACGAAAATTGT--ATTGCACTTACCGATTCAATGATAACATCATAA---ACCAGCCATATTTGTTT--GTTACAGATTTTTTTATTGAATGATTATCGAANAAAAGANNGATCTAAAGANNGTGTGTACAGATCTAAAGACAGATAAAAATATGTATTTTTTTAATTCAAATATGGTTATTTTCTAATTTTTAGTTGACGATGACACAGCTGTATACAGTTTTGATTCTTGTTTTTATCTTTTGCATACCATAAACCAACACATTCANGAATGACCTATCAAACACGNGATCATAGCTGCTATGTCAGTNGCAACACAAGTCTTCCATGTAATGTAGCT---ACCAACATAAAATCATATAAAACAAAATATTTGAAANACGGATGCAATTTATTTTATAATAAACCAAACAACCTGTGGTTGATAGANAGAAAGAAAGAAACGAANAAACAACATAGTATAACACGGGTTGCCTCCNTTCTACTTTTGAGACGACCCCCA-TATAATGTGTTTCTGAC-----C-AAATCGCGTGAAC--TNCAACTTTCACNACC----------GAACAAGTGGTGTTAAA--C-AATCTAATATTTTGTATGTATTTCGTCGTTATAGATAATACTTTAAATGT-------GGCAGGCATACTAGAAG-TT-TG--A-TTT-ATAGCACATGTA-TAAAAAA--GAAA---AA-CACAT-TCGTATAATAGCGTAA----ACGTCAATA-AA-A--ATG-ACTGATTTTCACGAACGACGAAAGAGG-A-AA-CACGA-A-CATTGACCTTTGCGCGAGTTCAAA-TCGATATTTTGAATAAACAAAGCAAGTATACTACC-TTT-T-AAAG-TATTCCAGCCTTTCTTTTAT---TA----ATATAAATAATTCCGAATCGAACGTCAATCTGAAATCGTGATATTGAGACC-ACAATTTCGATTT-TTCCCTGCATTTTACCAAAANAAATGGCGGC-AAAATATATTT--AT------CGTCGCTTGGGACGCTGAA-------G-G----G--------ACTATT--T--A--C-CGT-TGTTATACTAATGCGCAGTAGT----CGTCTGCATTTCATGTCATTTTAGTNGAAATTGTATGCTTTGACTACCGCATATTTGAAGTGTTTTT
gi|1 : TAATGTCTTGTCAGAAAATGATATACGGATTTACCAATGAGCTCATTTACTAATGGCATCATAATA-TA-TT-TT-CCACATTGACTCCGTGTTTC--GA-----------------------AATA--ATCAATTTG-TTGTTCCTTGCAAAAT------GTAGAATTAGCGCTTGCGACGCC----ATTCTGAAAATAACATTGAC-----TGTTTTATAAC-TTTT-CACAAACTTTAACCCTATGTAAAAGACGAAAAAT-CAATAACCT--T-CGGTAGTGAATGACACTTACAAACACTATTCCCACATCAATACAGATTATTAAGTTGGCAAAACGTCAGT-GTCCC-TCCCCGTTACTGAAAAAGACAAACTGTTTACACATGAAATTCTGTTACAGATTATTAGAAGTA----------ACACTTTTAGAT--------------------A------------TACTTTTTCA----------------------TCATCTTAAAAATCAATTGTATGCATATTCAAACTGAAGAACAAA-ATTAATAATATATTTCAATTACAGATAACGAAAATTGTAAATTGAACTTACTGATTCAATGTTAACACCATAA---ACCAGCCATATTTGTTTTGGTTACAGATTTTTTTATTGAATGATTATCAAACAAAAAACAGATCTAAAGACTGTGTGTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTTTTGATTCT--TTTTTATCTTTTGC-TATCATAAACCAACACATTCAGGAATGACCTATCAAACACAAGATCATAGTTGTTATGTCAGTTGCAACACAAGTCTTCCATATAATGTCGCT---ACCAACATAAAATCATATAAAACAAAATATTTGAAAAACAGGTGCAATTTATTTTATAATAAACCAAACAACCTGTGGTTGATAGACAGACAGAAAGCAACGAATAAAAAACATAGTATAGCACGGGTTGCCTCCATTCTA-TTTTGAGACGACCCCCA-TATAATGAGTTTCTGAC-----CAAAATCGCGTGAAC--TTCAACTTTCACCACC----------GAAAAAGT--TGTTCAA----AATCTGATATTTTGTATGTTTTTCGTCGTTATAAATAATACTTTAGATGT-------TGCAGGCATACTAGAAGTTT-TGATA-TTT-ATAGCACATGTA-TAAAAAAACGAAAAACAA-CACAT-TCGTATAATAGCGTAA----ACGTCAATA-AA-A--ATG-GCTGATTTTCACGAACGACGAA-----------------------GGCTTTTGCGCTAGTTCAAA-TCGATTTTTTAAATAAACAAAGCAAGTATGCTACA-TTT-T-AAAG-TATTTCAGTCTTTCGTTTAT---TA----ATATAAATAATTTTGAATCGAACGTCAATCTGATATAGTGGTATTGAAACCGAC-ATTTCCATTT-TTCTTTACATTTTACCAAAATAAATGGTGGC-AAAATATA--T--A-------CATCGCTTGGGACGCTGAA-------G-G----G--------ACTATT--T--A--C-CGT-TGCTATATTAATGCGCAATAGT----CGTCTGCATTTCATGTCATTTTAGACGAAATTGTATTTTTTGACTATCGTATATTTGAAGTGTTTTT
gi|10 : TAATTTCTTGTCAGAATATGATATACG-ATTGACCAATAAGCTCATTTACTACTGGCAGTATGATA-TA-TTCTT-CCACATTGACTCCGTATTTT--GA-----------------------GATA--
gi|12 : aaaatcaaaggcctgatgtttctgagggaagtccgactacctgaagaaattcatcaatattaggatttgggaaactaaaaaaacgtgttcaattgagttacagtacaacatcaaagcaatacagtgtcactttgacgactatatacatttaactatttaagacagtgaatataaaacatactgcataaacaaccccattagcatgaataaaatatttgccgactacgaccatacccaaacaatttgaccagaatgaaagaaatagcaatacagaatgacaacgaacaatggaaatcagttaatgtatattgcccatcacgtctttcttAAAAAAAATAGTTCC-AAAATATATTT--AT------CATCACTTGGGACGCTGAA-------G-GAGGGG--------ATTATT--TTTA--C-CGT-TGTTGTATAAATGTGCAATAGT----CGTTTGAATTTCATGTCATTTTAGTTGAAAATGTAGGTTTTGACTACCACATATTTGA--TGTTTTTcgt
gi|13 : AATTTTGATTT-TTCCCTGCATTTTGCCAAAACAAATGGTGGC-----TATATTA--AT------CATCGCTAGGGACGCTGGA-------GTG----G--------ACTATT--T----------------TACTAATGCGCAGTAGTTAGTCGTCTGCATTTCATGTCATTTTAGTAAAAATTGCACGCTTTGACTACCGCATATTTTAAGTGCTTTTtacaaaaatcacaatacaaatttggattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgctgtcaacagtataacaaaattatagaacaaaattatatttcggtctgtgccatccctatagaaggtatcgctactcacctaccaataaatgact
gi|14 : tTTT-CCAAAA-ATATAGCGGCCAAAATATATTT--AT------CGTCGCTTGCGACGCTGAAGT-----G-G----G--------A-------------------------ACCAATGCCCAGTAGC----CGTCAGCATTTC----------AGTGGAAATTG-----------TACCGCATATTTGAAGTGTTTTgctttctgtttgataaaacaaaaatcgcaacaaaatcaaatttggatcgttacatcctgtgctatggcaattgcattttaaaatgtttggaactattttatctgtcagaggaaatgaaatcgccatcatcagtataacaaa
gi|15 : A-CACAT-TCATATAATAGCGTAATTAAACATCAATAGAA-A--ATG-ATTGATTTTCA-GAATGACGAAAGAGG-A-AA-CAAGA-AACATTTACCTTTGCGCAAGTTCAAAATCGATATTTTGAATAAACAAAGCAATTACATTACC-TTTAT-AAAG-TATTCAAGCCTTTCTTTTAT---TA----ATATAAATAATTCCGAATCGAACATCAATCTGAAATCATGATATTGAGACC-ACAGTTTCAATTT-TTCCCTGCATTTTgctctccgaaagaacgaaaacaaacaatataatctgctatagcgttttgaaacttttggaactattttattggttggaggaaatgaaatcaccgtcaacagtataacaaaggttatagaacaaaagtgtaaatgggccgcacgatcactatagaaggctacgttcgccttccaagtatata
gi|16 : TTCAAGCCTTT--TTTAT---TA----ATATAAATAATTGCGTATCGAACGTCAATCTGAAATCCTGATATTGAAATC-ACAATTTAAGTTT-TTTTCTGCA----------AGAAA-GGCTGCCAAAATATATTT--AT------CGGCGCTTGGGACGCTGAA-------G-T----G--------ACTATT--T--TTTC-CAT-CGCTTTCCTAATACACAGTGGA----CGTCTGCATTTCATGTCACTTAAGTATAAATTGTATGCTTTGAC-ACTGCATATTTGAAGTGTTTTTggtggccttaatatgtttaaagggtaattaaaatgctatataattt
gi|17 : TAGTTTCTTATCAGAATATGATGTAAGGATTAACCAATGAGCTCATTTACTACTGGCATCATAATA-TA-TTATT-CCACAATGACCC--TGTTTC--AA-----------------------AATA--ATCAATTTG-TTATTCCTTGCAAAAT------GTAGAATTCGCACTTAAGACCCCATGGATTTTG---------TTGAC-----CGTCTTACAG-------CACAAA----GAGCATATATctctctgtttgatagaacaaaaatcgcaata
gi|19 : tcacttgcagttttgactatcatgtcgtttttcttC----ATTTTGAAAATAACATTGACTACCGTAGTCTATAACTTTTT-CATGAACTTTAAATGTATATCAACAATGAAAAtggaggatgacttccaatgtcctgggttgacagacatcaccggcg
gi|2 : tATTACTACGGATCAATAAATTGGCAAAACGTCAGT-GTTCC-TAACCGTTACTGATATA---AAACTGTTTACAACTGATATTATGTAACATATTATTGGAGGTA----------ACACCTTCAGAT--------------------ATTTTCGGATCATTATTTTTTCATTTATGCCTATAGATTATTTTATTATCTTAAAAAAC-ATTGTATGCATAATCAAAATGAAGAACAAAT-T--AT--TATTTTTCAATTACAGTAAATGAAA-------ATTGCACTTACTGATTCAGTGATAACATCATGA---ACCAGCCACATTTGTTT--GTTACAGA-TTTTTTATTGAATGACTATCGAAAAAAAGAACGA---AAAAAAAG-----ACAGATCTAAAGACAGATAAAAATATGTATTTTTTTAATTCAAATATGGTTATTTTCTAATTTTTAGTTGACGATGACACAGCTGTATACAGTTTTGATTCTTGTTTTTA----TTGTATACCATAAACCAACACATTCATGAATGACCTATCAAACACGTGATCATAGCTGCTATGTTAGTAGCAACA-AAGTCTTCCATGTAATGTAGCT---ACGAACATAAAATCATATGAAACAAAATATTTGAAAGATGGATGCAATTTATTTTATAATAAACCAAACAACATGTGGTTGATAGATAGGAAGAAAGAAACGAAAAAACTATATAGTATAACACGGGTTGCCTCatcgttaatccaccaagaccgtttttgtacattttacaattgtttactttttgttaattgttgcagtcagtcatctggaaagtaaacattgaaatttaaagcttcagtatgcctagaaatcaatattattgcatacatagag
gi|20 : cttggaaannnnnnnnnnCAAAAACTACAGTAGACA--TTC-ATAGTGAATGACACTTACTAACACCATTCCCACATTACTAGAGGTTATTTAATCAACAAAGCAT-ATTGGTTTC-TCCCTGTTATTGATATA---AAACTGTTTACAACTGAAATTCGGTTCGAGGTTAT
gi|21 : aaatagccttgaaaccattttattactatctatctactgttctatCGAAAACCACAGTAGACAATT-G-GTAGTGAATGACACTTACAAACACTATTCC-----TAATATGGATTATTAAATCAGCAAAACATCAGT-GTTCTATTTCCGTTACTCACATG---AAACTGCTTACAAATGAAGTCCTGTTACAGATGATTGGAAGGA----------ACACTTTCAGAT--------------------A----------------TTTTCA----------------------
gi|22 : TTGTCAAACTATGACATACGGATTTACTAATGAACTCATTTACTATAAGCATCATAATA-TA-TTATT-CCACATTGGCTCCGTGTTTC--GA-----------------------AGTA--ATCAAT----TTGTTCCTTGCAAAAT------GTATAATTTGCAT---AGAC--------------------------------TGGTTTGTATA-TTCT-AACAAACTTTAAGCATATGTAACAGgataggatcctta
gi|24 : TAATTTCTTGTCAGATT-TGATATACAGATTTACCAATGTGCTCATTTACTACTGTCATCAGAATA-CATTT-TT-CCACATTGACTCTGTGTTTC--GA-----------------------AATA--AACGATT
gi|25 : gggtaaatatgttatttatttttggagatattgtgttgtgtcgtctttcttATAT-TTGTATAATAGCGTAA----ATTTCAATA-AA-A--ATTTACTGATTTTCATGACCGACGAAAGAGG-TTAG-CACAA-A-CAATGGCCTAAGCATAAGTTCAAA-TCAATATTTTTAATAAACACAGCAAGTATAATACA-TTTCT-AAAG-T
gi|26 : T-TT-CCATATTG--------CTTC--AA-----------------------GATAGGAT---TTTGATTATTTC---CAAAATA-----GTA-AATTT---TTTGTT---CC-------TTG----CAATATTTTC-----TGGTTTATAAC-TTTTACACAAACTTTAAGCATAAGT
gi|29 : --ATTGCACTAACCGATTCAATGATAACATCATAATTAACCAGCCATATTTGTTG--GTTATAGATTTTTTTATTGAAAGATTATCca
gi|3 : AATTAAAAT-GACA----C-TTAGTGAAGGACACTTACAAAC
gi|3 : aaaaccttaatTAATTTCCTGTCACAATATGATATACAGATTTACCAATGAACTAATTTACCACTTGCATTATAATA-TA-TT-TTTCCACACTGACACCATGTTCC--AAGATATGATTTTGATTATTTCCATAATA--ATCAATTTG-TTGTTCCTTGCAACAT------GTATATTTAGCACTTGTGATGCC----ATTTTGAAAATAACATTGAC-----TGGTTTATAACTTTTT-CACAAACTTTAAACATcttaataattaaaatcaaaggcctaaatggcctgagggaaggccattaatattaggatttgggaaattgacagtatagcatcaaagcagtacagttcactttaaatgatcagtggttttgacggctaaaaaatgtcactatttaagacagtgaatataaaacatgctgcatcagcatcatcttcaccataaaatattaactgaccatgatcatactcaaacaaattgaacagaatgaaaaaatagcaataaaacttgatgacaaaccaatgaaaacaattaatgtcaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnactttaatttcctgtcacaatatgatatacagatttaccaatgaactaatttaccacttgcattataatatatttttccacactgacaccatgttccaagatatgattttgattatttccataataatcaatttgttgttccttgcaacatgtatatttagcacttgtgatgccattttgaaaataacattgactggtttataactttttcacaaactttaaacat
gi|31 : aaaaccttaataattaaaatgacacttagtgaaggacacttacaaaccttaataattaaaatcaaaggcctaaatggcctgagggaaggccattaatattaggatttgggaaattgacagtatagcatcaaagcagtacagttcactttaaatgatcagtggttttgacggctaaaaaatgtcactatttaagacagtgaatataaaacatgctgcatcagcatcatcttcaccataaaatattaactgaccatgatcatactcaaacaaattgaacagaatgaaaaaatagcaataaaacttgatgacaaaccaatgaaaacaattaatgtcaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacttTTGGGCCACTGAA-------G-G----GTGGGGTGAACTATT--TTTA--T-CGT-TGTTGTAGTAATGTGCCGTAGT----CCTATGCATTTCATG
gi|32 : ttAAA---AA-CACAT-TCTTATAATAGCGTAA----ACGTCAATA-AA-AACATG-GCTGAT
gi|4 : cAATTTCTTGTCAGATTATGATATAAGGATTTACCAATGAGCACATTTACTAATG-----ATATTA-TA-TT-TT-CCACAATGACTCTGTGTTTCTGGA-----------------------TATG--AT---TTTGATTATTTC---CGAAATAATCAAGTTCCATTCACACTTGTGTTGCC----ATTTTGAAAATAACAGTGAC-----TGGTTTATAATATTTT-CATGAACTTTAATTATTTGTAAAATGTGAAAACT
gi|5 : tgacagtattctagtcaatggagtaaaataatggggtactggtcctgaccaatttgtaggagtatttattcaattgagtcacagtataacatcgaagcagctgtcagaccacagcagaacagtgtcactttaattagtggttttgatgactaaataaatcaaactatttaagagtgattataattttttttgcataaacaacatccttttaattttcagcataaaatatcagccctggactataaccatacccaacgaattgaccagaatgaaaaaaaatagcaataaagcttgacgactaaccagggtaattaagttaatgtcttatcatttacagttttgcccattatatcgtcttccttaGTAATGTAGTTTTGACCAT--TAAAATCATATAAAACAAAATATTTGAAATAAAGAT-CAATTTAGTTGATAATAAATCAAACAGCCTATGGTAGATAGAGAGAAAGAAAGAAACGAACAAACATCATAGAATAACACAGGTTGCCTCAATTATACTTTTGAAACGACCCCCA-TATAATGTGTTTCTGAC-----C-AAATTGGTTGAACAATGCAAA---AAAAAAC----------AAGCAAGTGGTGTTAAATTT-TTTTTAGTCTTTTGAATGTATTTCGTCATTATAAATAATACTTTAAATGT-------GACAGGCATACTAGAAG-TTCTG--A-TTTGAAAGCACATATA-TAAAAAA--AAA--------ACAT-TTGTAAAACAGCGTAA----ATGTAAAAA-AATA--AAG-ACCGATTTTCACAAATGGCGAAAGAGA-A-AAGCACAA-A-TGTTGACGGTAGTGTGAGTTCAAA-TCAATATTTTGAATAAACATAGCAAGTGTATTACCTTTT-T-AAAG-TATTCCAACCTTACTTTAGT---TT----ATATAAATAATTCTGAATCAAACATTA--TTGAAATTGTCATATTGAGACC-ATAATCTCAATTT-TTCACAGTATTTTAgataaccag
gi|6 : TAGTATAACACGTGTTGCCTCCCTTCTACTTTTAGTACGACCCCCAATATAATGTGTTTCTAACGACTTC-AA--CAC---AAC--TGCAA-----ACAATC----------GAACAAGTTGTGTTAAA--C-AATCTAATATATTGTATGTATTTCGTCATTATAGATAATAATTTAAATGTTAAATGTGGCTGGCGTACTAGAAG-T------------ATAGCACATGTA-TAAAAAA------------CACATATGGTA-AATGGCGTAA----ACGTCAATAGAA-A--ATT-ACTTATTTTCA-GAATGATAAAAGAGG-A-AA-CAAGATA-CATTTACCTTTGCGCGAATTCAAA-TCGATATTTTTAATAAACAAAGCAAGTACACTACC-TTT-TTAAAG-TATTCCAGCATTTCTTTTAT----A----ATATAAA--------------ATGTCAATCTGAAATCGTGGTTTTGATAAC-ACAGTTTCAATTT-TCCCCTGCATTTTACCAAAAT-AATGGCGGC-GTTAT-TATTCTAAT------CGTCGCTTGGGCCGCTGAAGGAGGTGG-G----G--------TCTATTTCT--A--C-CGT-TGTCATAGTAATGCGCAGTAGT----CGTCTGCATTTCATACTTTTTTATTTGAAACTGTATGCTTTGA
gi|7 : GTTGCATCCCTTCTACTTTTGAGACGACCCCCA-TAAAATGTGTTTCTGAG-----C-AAATTGTGTGAAA--TTCAACTTTCACCACCGAAAAATATTGAACAAGTGGTGTTAAA--CAAATCTAATATTGTGTATGT-TTTCGTCGTTATAGTTACGACTTTAAATGT-------GGCAGGCATACTAGAAA-TTATG--ATTTT-ATAGCAAAAGTATTAAAAAG--GAAA---GATCACAT-TCGTATAAAAGCTTAG------------------------------TTTTACGAACAACGAATGAGGTA-AG-CACAA-A-CATTGCCCTTTGCGCGAGTTCAAC-TCGATATTTTGAATAAACGAAGTAGTTATACTAAC-TTT-A-AAAATTATTCCAGCCTTTCTTTTATAAGTACGAGGTATAATTAATTCCGGATCGAACGTCAATC-----TC----TAATGAGACC-ACAATTT-GATTTATTTCCTGCATCTt
gi|7 : aATTT--ATTTCCTGCATCTCTTGGGATGCTGGAAAGG---G-G----G--------A-TATT--T--G--TACATATGTTATACTAATTCGCAGTAGT----CATCTGCAATTCATGcttgggatgctggaaagggggatatttgtacatatgttatactaattcgcagtagtcatctgcaattcatg
gi|8 : agttgcatcccttctacttttgagacgacccccataaaatgtgtttctgagcaaattgtgtgaaattcaactttcaccaccgaaaaatattgaacaagtggtgttaaacaaatctaatattgtgtatgttttcgtcgttatagttacgactttaaatgtggcaggcatactagaaattatgattttatagcaaaagtattaaaaaggaaagatcacattcgtataaaagcttagttttacgaacaacgaatgaggtaagcacaaacattgccctttgcgcgagttcaactcgatattttgaataaacgaagtagttatactaactttaaaaattattccagcctttcttttataagtacgaggtataattaattccggatcgaacgtcaatctctaatgagaccacaatttgTAATTTTTTGTCATAATAT-------------ACCAGTGAGCTCATTTACTATTT---TTATAATAATT-TT-TT-CCACATTGACTCCGTGTTTC--GA-----------------------AGT
gi|9 : atcgtgacatatcagcctctttggaacacaacaaacatgacatacttttccttctaatagatattggtgatgtctattttagataaggttttttgttgatggtgtaaaataaatgagtactgaccaatttataggattacagtactgatcattgcttaagactactaaatagatttaactatttagacagtaaataatatcaaacatgctgcataaataacatcatgcaaatcttcagcataaaatattaacaaattatgatatacccaagcaaattgactagaatggaaaaaatagcaataaaacttgacgactaaccatggaaattagtcattgtctgatcattcacagttttgcccatcatgtcttggtcttttttTAATTTCTTGTCAGAATATGAT-CGCAGATTTACCAATGAGCTCATTTACTACTGGTATCATAATA-TGTTT-TT-CCACAACGATTTCGTGTTTT--GA-----------------------AATA--AACAATTTG-TTGTTCCTTGCAAAAT------GTAGAATTTGCACTTGGGATACC----AATTTGAAAATAACATTGAC-----TGGTTTATAAC-TTTT-CACAAACTTTAAGCATATGT-AAAGACGAAAA-----------A--T-C-------AAT----------AACACTATTCCCACAATATAACAGATTATTTAAACAGCAAAACGGCAGT-ATTCC-TTCCCGTTACTGATATG---AAACTGTTTACAACTGAAATTCTGTTACAGATTATTGGAAGTAATCATAAGTGATACTTTCAGATCATTATTGTTTTATTTCGGCA------------TATTCTTTCA----------------------TCATCTTGAAAATCAATTGTATGCATATTCAAAATGAAGTACAAATGTTGTT--TTTTTTTCAATTACCGGTAgt
blockSeqs : G A T C T TG GATATGATTTTGATTATTTCCAT GG C A T AATCAA G C A ACC ATGGAT A TACCG CT A A C CTA G A ATTGG T C T C A G A A . ATCATAAGTG ATTTTCGGATCATTATTTTTTCATTTATGCCTATAGATTATTTTA A TGTTGTT T . TTA . T A AC . AA . TG . A T T A . TTG C G TG G T A A C A GACTT . A GT AA G CTTTC A GAAAAATATT G TTT A TAAATGT TTCTGATTTG T GAAAGAT A T TTAA G AAC TT T A TTAG AG AA A G T AT T AAGTACGAG C A A . TG A G A CA TA TTCCTG GGGTGGGGTGAACTATTTTTAT A G TAGT T T G
blockSeqs : G . T A . . . . C A T A T T A ATG AT A . CT . G A CCA G A TTCA A C T C T . . C . . CATTATTGTTTTATTTCGGCATATTCTTTCA . TTAT G . . . . . T AA . G C C C . . . A TG . G AA A . T CA A . TTATGATTTT . AAA . T . G TA G C A AAAG CA TA . T . CT . TA G T C . CA . A C CA . . GGAGGTGGGGTCTATTTCTAC . T . A C C
blockSeqs : G . . A . . . . C . T . T T T TTG AT A . TA . A A TTA A . CT A . A A A . . T . . ATTTTCA C C . . . . C . T . C . G C . . T . . . T . . A G C A TAAG CA A . G . TT . TA C A G . AA . A G A . . GGAGGGGATTATTTTTAC . G . G T T
blockSeqs : T . . . . . . . C . T . C A T ATA AT A . A . A . . . . TC . . T T . . T . . A . . A G . A AAA AG A . T . T . TT C G G . CA . . T G . . AAGGGGGATATTTGTA . A . A T T
blockSeqs : G . . . . . . . C . . . G C T AC AA . . C . A . T . . A T . T AAA CA A . G . A . A . . . . CA . . . . . . GTGACTATTTTTTC . A . T . .
blockSeqs : G . . . . . . . . . . . . T G . . . . C . G . . . . . . G . . . GTGGACTATTT . . .
blockSeqs : . . . . . . . . . . . . . . A GTGGGA . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . .
blockSeqCons : C* CTA TT***** *** TAAG** CG A** NT* A* GNGGGGGACTATTTTTAC*********************
originalCons : TAATTTCTTGTCAGAATATGATATACGGATTTACCAATGAGCTCATTTACTACTGGCATCATAATA-TA-TT-TT-CCACATTGACTCCGTGTTTC--GA-----------------------AATA--ATCAATTTG-TTGTTCCTTGCAAAAT------GTANAATTCGCACTTGNGACGCC----ATTTTGAAAATAACATTGAC-----TGGTTTATAAC-TTTT-CACGAACTTTAAGCATATGTAAAAGACGAAAACTACAGTAGACA--T-C-GTAGTGAATGACACTTACAAACACTATTCCCACATTANTACGGATTATTAAATCGGCAAAACGTCAGT-GTTCC-TCCCCGTTACTGATATA---AAACTGTTTACAACTGAAATTCTGTTACAGATTATTGGAAGTA----------ACACTTTCAGAT--------------------A------------TATTTTTTCA----------------------TCATCTTAAAAATCAATTGTATGCATATTCAAAATGAAGAACAAATGTTGAT--TATTTTTCAATTACAGNTAACGAAAATTGT--ATTGCACTTACCGATTCAATGATAACATCATAA---ACCAGCCATATTTGTTT--GTTACAGATTTTTTTATTGAATGATTATCGAANAAAAGANNGATCTAAAGANNGTGTGTACAGATCTAAAGACAGATAAAAATATGTATTTTTTTAATTCAAATATGGTTATTTTCTAATTTTTAGTTGACGATGACACAGCTGTATACAGTTTTGATTCTTGTTTTTATCTTTTGCATACCATAAACCAACACATTCANGAATGACCTATCAAACACGNGATCATAGCTGCTATGTCAGTNGCAACACAAGTCTTCCATGTAATGTAGCT---ACCAACATAAAATCATATAAAACAAAATATTTGAAANACGGATGCAATTTATTTTATAATAAACCAAACAACCTGTGGTTGATAGANAGAAAGAAAGAAACGAANAAACAACATAGTATAACACGGGTTGCCTCCNTTCTACTTTTGAGACGACCCCCA-TATAATGTGTTTCTGAC-----C-AAATCGCGTGAAC--TNCAACTTTCACNACC----------GAACAAGTGGTGTTAAA--C-AATCTAATATTTTGTATGTATTTCGTCGTTATAGATAATACTTTAAATGT-------GGCAGGCATACTAGAAG-TT-TG--A-TTT-ATAGCACATGTA-TAAAAAA--GAAA---AA-CACAT-TCGTATAATAGCGTAA----ACGTCAATA-AA-A--ATG-ACTGATTTTCACGAACGACGAAAGAGG-A-AA-CACGA-A-CATTGACCTTTGCGCGAGTTCAAA-TCGATATTTTGAATAAACAAAGCAAGTATACTACC-TTT-T-AAAG-TATTCCAGCCTTTCTTTTAT---TA----ATATAAATAATTCCGAATCGAACGTCAATCTGAAATCGTGATATTGAGACC-ACAATTTCGATTT-TTCCCTGCATTTTACCAAAANAAATGGCGGC-AAAATATATTT--AT------CGTCGCTTGGGACGCTGAA-------G-G----G--------ACTATT--T--A--C-CGT-TGTTATACTAATGCGCAGTAGT----CGTCTGCATTTCATGTCATTTTAGTNGAAATTGTATGCTTTGACTACCGCATATTTGAAGTGTTTTT
finalCons : TAATTTCTTGTCAGAATATGATATACGGATTTACCAATGAGCTCATTTACTACTGGCATCATAATA-TA-TT-TT-CCACATTGACTCCGTGTTTC--GA-----------------------AATA--ATCAATTTG-TTGTTCCTTGCAAAAT------GTANAATTCGCACTTGNGACGCC----ATTTTGAAAATAACATTGAC-----TGGTTTATAAC-TTTT-CACGAACTTTAAGCATATGTAAAAGACGAAAACTACAGTAGACATT-----TAGTGAATGACACTTACAAACACTATTCCCACATTANTACGGATTATTAAATCGGCAAAACGTCAGT-GTTCC-TCCCCGTTACTGATATA---AAACTGTTTACAACTGAAATTCTGTTACAGATTATTGGAAGTA----------ACACTTTCAGAT--------------------A------------TATTTTTTCA----------------------TCATCTTAAAAATCAATTGTATGCATATTCAAAATGAAGAACAAATGTTGAT--TATTTTTCAATTACAGNTAACGAAAATTGT--ATTGCACTTACCGATTCAATGATAACATCATAA---ACCAGCCATATTTGTTT--GTTACAGATTTTTTTATTGAATGATTATCGAANAAAAGANNGATCTAAAGANNGTGTGTACAGATCTAAAGACAGATAAAAATATGTATTTTTTTAATTCAAATATGGTTATTTTCTAATTTTTAGTTGACGATGACACAGCTGTATACAGTTTTGATTCTTGTTTTTATCTTTTGCATACCATAAACCAACACATTCANGAATGACCTATCAAACACGNGATCATAGCTGCTATGTCAGTNGCAACACAAGTCTTCCATGTAATGTAGCT---ACCAACATAAAATCATATAAAACAAAATATTTGAAANACGGATGCAATTTATTTTATAATAAACCAAACAACCTGTGGTTGATAGANAGAAAGAAAGAAACGAANAAACAACATAGTATAACACGGGTTGCCTCCNTTCTACTTTTGAGACGACCCCCA-TATAATGTGTTTCTGAC-----C-AAATCGCGTGAAC--TNCAACTTTCACNACC----------GAACAAGTGGTGTTAAA--C-AATCTAATATTTTGTATGTATTTCGTCGTTATAGATAATACTTTAAATGT-------GGCAGGCATACTAGAAG-TT-TG--A-TTT-ATAGCACATGTA-TAAAAAA--GAAA---AA-CACAT-TCGTATAATAGCGTAA----ACGTCAATA-AA-A--ATG-ACTGATTTTCACGAACGACGAAAGAGGTAAG--CACGAA--CATTGACCTTTGCGCGAGTTCAAA-TCGATATTTTGAATAAACAAAGCAAGTATACTACC-TTTNT-AAAG-TATTCCAGCCTTTCTTTTAT---TA----ATATAAATAATTCCGAATCGAACGTCAATCTGAAATCGTGATATTGAGACC-ACAATTTCGATTT-TTCCCTGCATTTTACCAAAANAAATGGCGGCA-AAATATATTT--AT------CGTCGCTTGGGACGCTGAAGNGGGGGACTATTTTTAC---------------------CGT-TGTTATACTAATGCGCAGTAGT----CGTCTGCATTTCATGTCATTTTAGTNGAAATTGTATGCTTTGACTACCGCATATTTGAAGTGTTTTT
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): AAAACTAAAAAATGAAATGAAAATAAACGAGGTAACTTAAATAAAACAAAAATCATAGTCCTGAATGACCTGAGGGATGGCTTTGCTACTTGGACAAATTCACTAATAATAGGATTTGAGCAATTGAAAAACTTGTTCGACTGAGCTACTGTACTGTGTAACTCAAAGTAGAACTGTCAACAGTGTCACTTTGATCAATGGTTTTGACGACTAAATAATTTTAGCTATCTAAGACAGTGAGTATAAAACATGCTGCATAAACAACACCTCAGCATAAAATATTAGCAGACTATGACCGTAACCAAACAAATTGACCAGAATAGAAGAAATAGCCATAAAGCTTGATGATGAACCATGGAAATCA
Unaligned ( gi|18 ): GACAGCACTCTAGATAAAGTTAAAGGCAATGTAGTAAGGAGTATTCAATTCAGTTACTGTACGCTGGCCAAAGCAGTACAGTGTCATTTTGATGACTAAATAAATTCTACTATTTAGACAATGATTATAAAATTTTAATTATAAAACATGCTGTAAAAAACAACACCCTTTTAAGTTTAGTTGGCTATGACCATACACAAACAAATTGACTAGAATGAAAATAGTAACAATA
Unaligned ( gi|23 ): CTTCAAATAATCAGTTGTTTTGACGACTAAATAAATTTATGTAACTATTTAAGACAATGAATATAAAACATGCTGTATAAACATTTTCAGCATAAAATATTAGCCGACTATGACCATACCTAAACAAAGTGATGACAAACCATGAAATCAGTTAATGTCTAATTG
Unaligned ( gi|27 ): GCACTTCAGAACCCGGTGGATTTTGCTGATCGTATTGCAGCACAAAGAGAATATATTTGAGGACGACTTCCGATGTCCTGGGTTGACAGAAACATCACCAGCG
Unaligned ( gi|28 ): CACGAAACCGACGAACGATAGATAAGTCACAATACATCATGACATAAGTCTCTTAGGAACACAACAAACACGACATACTTTTAACTTCT
Unaligned ( gi|30 ): ACAGTATAACAAAGATTACAGAGCAAAATTAAACCTCTGACAATGGCTATAGAACGCGTCGCTCCAGTCGCCTTCCAAAAA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 33333333333333333333333 1 222222 111111 11111 11 1 44444444444 111 4444444444 55555555555555555555555555555555555555555555555555555555555555555 333333333 4444444 222 11 222 22222 11 2222 1 1 222 1 22222 1 11 22222 4444444444 11 11 3333333 33333333333333 1 333333333333 1111 1 1 222222222 111111 2222222222222 1111
lowQualScore : 0 3 4 8 2 4 0 0 55 77777777777777777777777 66 2 1 5 222222 6 4 1 888 111111 6 22222 66 5 2 0 5 1 0 00000000000 0 1 2 1 1 1 8 8 1 444 3333333333 99999999999999999999999999999999999999999999999999999999999999999 7 000000000 1 5555555 0 333 88 7 1 22 111 22 66666 88 4444 5 1 1 1 5 333 6 1 44 6 1 1 1 2 0 0 55555 0 3 99 33 1 66666 1 0 3333333333 8 66 33 9 2222222 99999999999999 0 555555555555 5 1 2222 1 8888 66 9 3 5 44 888 6 1 7 000000000 1 1 5 6 55 5 5 7 6 88 77 666666 1111111111111 1 0 00 11 0 4 0 0000 1 1 1 0 0
lowQualScore : . . . . . . . . .. ....................... .. . . . ...... . . . ... ...... . ..... .. . . . . . . ........... . . . . . . . . . ... .......... ................................................................. . ......... . ....... . ... .. . . .. ... .. ..... .. .... . . . . . ... . . .. . . . . . . . ..... . . .. .. . ..... . . .......... . .. .. . ....... .............. . ............ . . .... . .... .. . . . .. ... . . . ......... . . . . .. . . . . .. .. ...... ............. . . .. .. . . . .... . . . . .
lowQualScore : 8 9 4 9 0 0 3 7 55 00000000000000000000000 11 5 4 0 111111 6 0 0 777 000000 2 55555 44 0 0 2 6 0 6 88888888888 6 0 5 0 0 4 0 0 4 000 8888888888 00000000000000000000000000000000000000000000000000000000000000000 3 333333333 0 3333333 7 333 33 3 0 00 000 00 55555 00 0000 5 0 0 0 0 333 7 0 33 7 0 0 0 5 2 0 00000 0 2 00 88 0 55555 0 2 8888888888 8 55 88 8 5555555 22222222222222 0 999999999999 7 7 1111 4 0000 44 3 5 7 77 333 7 0 5 333333333 0 8 2 7 77 7 7 5 7 33 99 444444 9999999999999 4 1 44 66 8 0 2 6666 0 7 5 8 8
consensus : TAATTTCTTGTCAGAATATGATATACGGATTTACCAATGAGCTCATTTACTACTGGCATCATAATA-TA-TT-TT-CCACATTGACTCCGTGTTTC--GA-----------------------AATA--ATCAATTTG-TTGTTCCTTGCAAAAT------GTANAATTCGCACTTGNGACGCC----ATTTTGAAAATAACATTGAC-----TGGTTTATAAC-TTTT-CACGAACTTTAAGCATATGTAAAAGACGAAAACTACAATAGACA-TTCG-TAGTGAATGACACTTACAAACACTATTCCCACATTANTACGGATTATTAAATCGGCAAAACGTCAGT-GTTCC-TCCCCGTTACTGATATA---AAACTGTTTACAACTGAAATTCTGTTACAGATTATTGGAAGTA----------ACACTTTCAGAT--------------------A------------TATTTTTTCA----------------------TCATCTTAAAAATCAATTGTATGCATATTCAAAATGAAGAACAAATGTTGAT--TATTTTTCAATTACAGNTAACGAAAATTGT--ATTGCACTTACCGATTCAATGATAACATCATAA---ACCAGCCATATTTGTTT--GTTACAGATTTTTTTATTGAATGATTATCGAANAAAAGANNGATCTAAAGANNGTGTGTACAGATCTAAAGACAGATAAAAATATGTATTTTTTTAATTCAAATATGGTTATTTTCTAATTTTTAGTTGACGATGACACAGCTGTATACAGTTTTGATTCTTGTTTTTATCTTTTGCATACCATAAACCAACACATTCANGAATGACCTATCAAACACGNGATCATAGCTGCTATGTCAGTNGCAACACAAGTCTTCCATGTAATGTAGCT---ACCAACATAAAATCATATAAAACAAAATATTTGAAANACGGATGCAATTTATTTTATAATAAACCAAACAACCTGTGGTTGATAGANAGAAAGAAAGAAACGAANAAACAACATAGTATAACACGGGTTGCCTCCNTTCTACTTTTGAGACGACCCCCA-TATAATGTGTTTCTGAC-----C-AAATCGCGTGAAC--TNCAACTTTCACNACC----------GAACAAGTGGTGTTAAAC-AATCT--AATATTTTGTATGTATTTCGTCGTTATAGATAATACTTTAAATGT-------GGCAGGCATACTAGAAG-TT-TG--A-TTT-ATAGCACATGTA-TAAAAAA--GAAA---AA-CACAT-TCGTATAATAGCGTAA----ACGTCAATA-AA-A--ATG-ACTGATTTTCACGAACGACGAAAGAGG-AAGCACGA-A-CATTGACCTTTGCGCGAGTTCAAA-TCGATATTTTGAATAAACAAAGCAAGTATACTACCTTTNTAAAGTATTCCAGCCTTTCTTTTAT---TA----ATATAAATAATTCCGAATCGAACGTCAATCTGAAATCGTGATATTGAGACC-ACAATTTCGATTT-TTCCCTGCATTTTACCAAAANAAATGGC-GGC-AAAATATATTT--AT------CGTCGCTTGGGACGCTGAAGNG-GG---GG---ACTATTTTTACCGTTGTTATACTAATGCGCAGTAGT----CGTCTGCATTTCATGTCATTTTAGTNGAAATTGTATGCTTTGACTACCGCATATTTGAAGTGTTTTT
Reference ( family-550 ) : TAATTTCTTGTCAGAATATGATATACGGATTTACCAATGAGCTCATTTACTACTGGCATCATAATA-TA-TT-TT-CCACATTGACTCCGTGTTTC--GA-----------------------AATA--ATCAATTTG-TTGTTCCTTGCAAAAT------GTANAATTCGCACTTGNGACGCC----ATTTTGAAAATAACATTGAC-----TGGTTTATAAC-TTTT-CACGAACTTTAAGCATATGTAAAAGACGAAAACTACAGTAGACA-TT---TAGTGAATGACACTTACAAACACTATTCCCACATTANTACGGATTATTAAATCGGCAAAACGTCAGT-GTTCC-TCCCCGTTACTGATATA---AAACTGTTTACAACTGAAATTCTGTTACAGATTATTGGAAGTA----------ACACTTTCAGAT--------------------A------------TATTTTTTCA----------------------TCATCTTAAAAATCAATTGTATGCATATTCAAAATGAAGAACAAATGTTGAT--TATTTTTCAATTACAGNTAACGAAAATTGT--ATTGCACTTACCGATTCAATGATAACATCATAA---ACCAGCCATATTTGTTT--GTTACAGATTTTTTTATTGAATGATTATCGAANAAAAGANNGATCTAAAGANNGTGTGTACAGATCTAAAGACAGATAAAAATATGTATTTTTTTAATTCAAATATGGTTATTTTCTAATTTTTAGTTGACGATGACACAGCTGTATACAGTTTTGATTCTTGTTTTTATCTTTTGCATACCATAAACCAACACATTCANGAATGACCTATCAAACACGNGATCATAGCTGCTATGTCAGTNGCAACACAAGTCTTCCATGTAATGTAGCT---ACCAACATAAAATCATATAAAACAAAATATTTGAAANACGGATGCAATTTATTTTATAATAAACCAAACAACCTGTGGTTGATAGANAGAAAGAAAGAAACGAANAAACAACATAGTATAACACGGGTTGCCTCCNTTCTACTTTTGAGACGACCCCCA-TATAATGTGTTTCTGAC-----C-AAATCGCGTGAAC--TNCAACTTTCACNACC----------GAACAAGTGGTGTTAAAC-AATCT--AATATTTTGTATGTATTTCGTCGTTATAGATAATACTTTAAATGT-------GGCAGGCATACTAGAAG-TT-TG--A-TTT-ATAGCACATGTA-TAAAAAA--GAAA---AA-CACAT-TCGTATAATAGCGTAA----ACGTCAATA-AA-A--ATG-ACTGATTTTCACGAACGACGAAAGAGGTAAGCACGA-A-CATTGACCTTTGCGCGAGTTCAAA-TCGATATTTTGAATAAACAAAGCAAGTATACTACCTTTNTAAAGTATTCCAGCCTTTCTTTTAT---TA----ATATAAATAATTCCGAATCGAACGTCAATCTGAAATCGTGATATTGAGACC-ACAATTTCGATTT-TTCCCTGCATTTTACCAAAANAAATGGC-GGC-AAAATATATTT--AT------CGTCGCTTGGGACGCTGAAGNG-GG---GG---ACTATTTTTACCGTTGTTATACTAATGCGCAGTAGT----CGTCTGCATTTCATGTCATTTTAGTNGAAATTGTATGCTTTGACTACCGCATATTTGAAGTGTTTTT
gi|1 : TAATGTCTTGTCAGAAAATGATATACGGATTTACCAATGAGCTCATTTACTAATGGCATCATAATA-TA-TT-TT-CCACATTGACTCCGTGTTTC--GA-----------------------AATA--ATCAATTTG-TTGTTCCTTGCAAAAT------GTAGAATTAGCGCTTGCGACGCC----ATTCTGAAAATAACATTGAC-----TGTTTTATAAC-TTTT-CACAAACTTTAACCCTATGTAAAAGACGAAAAAT-CAATA-ACC-TTCGGTAGTGAATGACACTTACAAACACTATTCCCACATCAATACAGATTATTAAGTTGGCAAAACGTCAGT-GTCCC-TCCCCGTTACTGAAAAAGACAAACTGTTTACACATGAAATTCTGTTACAGATTATTAGAAGTA----------ACACTTTTAGAT--------------------A------------TACTTTTTCA----------------------TCATCTTAAAAATCAATTGTATGCATATTCAAACTGAAGAACAAA-ATTAATAATATATTTCAATTACAGATAACGAAAATTGTAAATTGAACTTACTGATTCAATGTTAACACCATAA---ACCAGCCATATTTGTTTTGGTTACAGATTTTTTTATTGAATGATTATCAAACAAAAAACAGATCTAAAGACTGTGTGTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTTTTGATTCT--TTTTTATCTTTTGC-TATCATAAACCAACACATTCAGGAATGACCTATCAAACACAAGATCATAGTTGTTATGTCAGTTGCAACACAAGTCTTCCATATAATGTCGCT---ACCAACATAAAATCATATAAAACAAAATATTTGAAAAACAGGTGCAATTTATTTTATAATAAACCAAACAACCTGTGGTTGATAGACAGACAGAAAGCAACGAATAAAAAACATAGTATAGCACGGGTTGCCTCCATTCTA-TTTTGAGACGACCCCCA-TATAATGAGTTTCTGAC-----CAAAATCGCGTGAAC--TTCAACTTTCACCACC----------GAAAAAGT--TGTTCAA--AATCT--GATATTTTGTATGTTTTTCGTCGTTATAAATAATACTTTAGATGT-------TGCAGGCATACTAGAAGTTT-TGATA-TTT-ATAGCACATGTA-TAAAAAAACGAAAAACAA-CACAT-TCGTATAATAGCGTAA----ACGTCAATA-AA-A--ATG-GCTGATTTTCACGAACGACGAA---------------------GGCTTTTGCGCTAGTTCAAA-TCGATTTTTTAAATAAACAAAGCAAGTATGCTACATTT-TAAAGTATTTCAGTCTTTCGTTTAT---TA----ATATAAATAATTTTGAATCGAACGTCAATCTGATATAGTGGTATTGAAACCGAC-ATTTCCATTT-TTCTTTACATTTTACCAAAATAAATGGT-GGC-AAAATATA--T--A-------CATCGCTTGGGACGCTGAA-----G---GG---ACTA--TTTACCGTTGCTATATTAATGCGCAATAGT----CGTCTGCATTTCATGTCATTTTAGACGAAATTGTATTTTTTGACTATCGTATATTTGAAGTGTTTTT
gi|10 : TAATTTCTTGTCAGAATATGATATACG-ATTGACCAATAAGCTCATTTACTACTGGCAGTATGATA-TA-TTCTT-CCACATTGACTCCGTATTTT--GA-----------------------GATA--
gi|12 : aaaatcaaaggcctgatgtttctgagggaagtccgactacctgaagaaattcatcaatattaggatttgggaaactaaaaaaacgtgttcaattgagttacagtacaacatcaaagcaatacagtgtcactttgacgactatatacatttaactatttaagacagtgaatataaaacatactgcataaacaaccccattagcatgaataaaatatttgccgactacgaccatacccaaacaatttgaccagaatgaaagaaatagcaatacagaatgacaacgaacaatggaaatcagttaatgtatattgcccatcacgtctttcttAAAAAAAATAGT-TCC-AAAATATATTT--AT------CATCACTTGGGACGCTGAAGGA-GG---GG---ATTATTTTTACCGTTGTTGTATAAATGTGCAATAGT----CGTTTGAATTTCATGTCATTTTAGTTGAAAATGTAGGTTTTGACTACCACATATTTGA--TGTTTTTcgt
gi|13 : AATTTTGATTT-TTCCCTGCATTTTGCCAAAACAAATGGT-GGC-----TATATTA--AT------CATCGCTAGGGACGCTGGAGTG-G---------ACTATTTT------------ACTAATGCGCAGTAGTTAGTCGTCTGCATTTCATGTCATTTTAGTAAAAATTGCACGCTTTGACTACCGCATATTTTAAGTGCTTTTtacaaaaatcacaatacaaatttggattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgctgtcaacagtataacaaaattatagaacaaaattatatttcggtctgtgccatccctatagaaggtatcgctactcacctaccaataaatgact
gi|14 : tTTT-CCAAAA-ATATAGC-GGCCAAAATATATTT--AT------CGTCGCTTGCGACGCTGAAGTG-GG---A------------------------ACCAATGCCCAGTAGC----CGTCAGCATTTC----------AGTGGAAATTG-----------TACCGCATATTTGAAGTGTTTTgctttctgtttgataaaacaaaaatcgcaacaaaatcaaatttggatcgttacatcctgtgctatggcaattgcattttaaaatgtttggaactattttatctgtcagaggaaatgaaatcgccatcatcagtataacaaa
gi|15 : A-CACAT-TCATATAATAGCGTAATTAAACATCAATAGAA-A--ATG-ATTGATTTTCA-GAATGACGAAAGAGG-AAACAAGA-AACATTTACCTTTGCGCAAGTTCAAAATCGATATTTTGAATAAACAAAGCAATTACATTACCTTTATAAAGTATTCAAGCCTTTCTTTTAT---TA----ATATAAATAATTCCGAATCGAACATCAATCTGAAATCATGATATTGAGACC-ACAGTTTCAATTT-TTCCCTGCATTTTgctctccgaaagaacgaaaacaaacaatataatctgctatagcgttttgaaacttttggaactattttattggttggaggaaatgaaatcaccgtcaacagtataacaaaggttatagaacaaaagtgtaaatgggccgcacgatcactatagaaggctacgttcgccttccaagtatata
gi|16 : TTCAAGCCTTT--TTTAT---TA----ATATAAATAATTGCGTATCGAACGTCAATCTGAAATCCTGATATTGAAATC-ACAATTTAAGTTT-TTTTCTGC----------AAGAAA-GGCTGCC-AAAATATATTT--AT------CGGCGCTTGGGACGCTGAAGT--------G---ACTATTTTTTCCATCGCTTTCCTAATACACAGTGGA----CGTCTGCATTTCATGTCACTTAAGTATAAATTGTATGCTTTGAC-ACTGCATATTTGAAGTGTTTTTggtggccttaatatgtttaaagggtaattaaaatgctatataattt
gi|17 : TAGTTTCTTATCAGAATATGATGTAAGGATTAACCAATGAGCTCATTTACTACTGGCATCATAATA-TA-TTATT-CCACAATGACCC--TGTTTC--AA-----------------------AATA--ATCAATTTG-TTATTCCTTGCAAAAT------GTAGAATTCGCACTTAAGACCCCATGGATTTTG---------TTGAC-----CGTCTTACAG-------CACAAA----GAGCATATATctctctgtttgatagaacaaaaatcgcaata
gi|19 : tcacttgcagttttgactatcatgtcgtttttcttC----ATTTTGAAAATAACATTGACTACCGTAGTCTATAACTTTTT-CATGAACTTTAAATGTATATCAACAATGAAAAtggaggatgacttccaatgtcctgggttgacagacatcaccggcg
gi|2 : tATTACTACGGATCAATAAATTGGCAAAACGTCAGT-GTTCC-TAACCGTTACTGATATA---AAACTGTTTACAACTGATATTATGTAACATATTATTGGAGGTA----------ACACCTTCAGAT--------------------ATTTTCGGATCATTATTTTTTCATTTATGCCTATAGATTATTTTATTATCTTAAAAAAC-ATTGTATGCATAATCAAAATGAAGAACAAAT-T--AT--TATTTTTCAATTACAGTAAATGAAA-------ATTGCACTTACTGATTCAGTGATAACATCATGA---ACCAGCCACATTTGTTT--GTTACAGA-TTTTTTATTGAATGACTATCGAAAAAAAGAACGA---AAAAAAAG-----ACAGATCTAAAGACAGATAAAAATATGTATTTTTTTAATTCAAATATGGTTATTTTCTAATTTTTAGTTGACGATGACACAGCTGTATACAGTTTTGATTCTTGTTTTTA----TTGTATACCATAAACCAACACATTCATGAATGACCTATCAAACACGTGATCATAGCTGCTATGTTAGTAGCAACA-AAGTCTTCCATGTAATGTAGCT---ACGAACATAAAATCATATGAAACAAAATATTTGAAAGATGGATGCAATTTATTTTATAATAAACCAAACAACATGTGGTTGATAGATAGGAAGAAAGAAACGAAAAAACTATATAGTATAACACGGGTTGCCTCatcgttaatccaccaagaccgtttttgtacattttacaattgtttactttttgttaattgttgcagtcagtcatctggaaagtaaacattgaaatttaaagcttcagtatgcctagaaatcaatattattgcatacatagag
gi|20 : cttggaaannnnnnnnnnCAAAAACTACAGTAGACA-TTCA-TAGTGAATGACACTTACTAACACCATTCCCACATTACTAGAGGTTATTTAATCAACAAAGCAT-ATTGGTTTC-TCCCTGTTATTGATATA---AAACTGTTTACAACTGAAATTCGGTTCGAGGTTAT
gi|21 : aaatagccttgaaaccattttattactatctatctactgttctatCGAAAACCACAGTAGACAATTGG-TAGTGAATGACACTTACAAACACTATTCC-----TAATATGGATTATTAAATCAGCAAAACATCAGT-GTTCTATTTCCGTTACTCACATG---AAACTGCTTACAAATGAAGTCCTGTTACAGATGATTGGAAGGA----------ACACTTTCAGAT--------------------A----------------TTTTCA----------------------
gi|22 : TTGTCAAACTATGACATACGGATTTACTAATGAACTCATTTACTATAAGCATCATAATA-TA-TTATT-CCACATTGGCTCCGTGTTTC--GA-----------------------AGTA--ATCAAT----TTGTTCCTTGCAAAAT------GTATAATTTGCAT---AGAC--------------------------------TGGTTTGTATA-TTCT-AACAAACTTTAAGCATATGTAACAGgataggatcctta
gi|24 : TAATTTCTTGTCAGATT-TGATATACAGATTTACCAATGTGCTCATTTACTACTGTCATCAGAATA-CATTT-TT-CCACATTGACTCTGTGTTTC--GA-----------------------AATA--AACGATT
gi|25 : gggtaaatatgttatttatttttggagatattgtgttgtgtcgtctttcttATAT-TTGTATAATAGCGTAA----ATTTCAATA-AA-A--ATTTACTGATTTTCATGACCGACGAAAGAGGTTAGCACAA-A-CAATGGCCTAAGCATAAGTTCAAA-TCAATATTTTTAATAAACACAGCAAGTATAATACATTTCTAAAGT
gi|26 : T-TT-CCATATTG--------CTTC--AA-----------------------GATAGGAT---TTTGATTATTTC---CAAAATA-----GTA-AATTT---TTTGTT---CC-------TTG----CAATATTTTC-----TGGTTTATAAC-TTTTACACAAACTTTAAGCATAAGT
gi|29 : --ATTGCACTAACCGATTCAATGATAACATCATAATTAACCAGCCATATTTGTTG--GTTATAGATTTTTTTATTGAAAGATTATCca
gi|3 : AATTAAAAT-GACA-CT---TAGTGAAGGACACTTACAAAC
gi|3 : aaaaccttaatTAATTTCCTGTCACAATATGATATACAGATTTACCAATGAACTAATTTACCACTTGCATTATAATA-TA-TT-TTTCCACACTGACACCATGTTCC--AAGATATGATTTTGATTATTTCCATAATA--ATCAATTTG-TTGTTCCTTGCAACAT------GTATATTTAGCACTTGTGATGCC----ATTTTGAAAATAACATTGAC-----TGGTTTATAACTTTTT-CACAAACTTTAAACATcttaataattaaaatcaaaggcctaaatggcctgagggaaggccattaatattaggatttgggaaattgacagtatagcatcaaagcagtacagttcactttaaatgatcagtggttttgacggctaaaaaatgtcactatttaagacagtgaatataaaacatgctgcatcagcatcatcttcaccataaaatattaactgaccatgatcatactcaaacaaattgaacagaatgaaaaaatagcaataaaacttgatgacaaaccaatgaaaacaattaatgtcaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnactttaatttcctgtcacaatatgatatacagatttaccaatgaactaatttaccacttgcattataatatatttttccacactgacaccatgttccaagatatgattttgattatttccataataatcaatttgttgttccttgcaacatgtatatttagcacttgtgatgccattttgaaaataacattgactggtttataactttttcacaaactttaaacat
gi|31 : aaaaccttaataattaaaatgacacttagtgaaggacacttacaaaccttaataattaaaatcaaaggcctaaatggcctgagggaaggccattaatattaggatttgggaaattgacagtatagcatcaaagcagtacagttcactttaaatgatcagtggttttgacggctaaaaaatgtcactatttaagacagtgaatataaaacatgctgcatcagcatcatcttcaccataaaatattaactgaccatgatcatactcaaacaaattgaacagaatgaaaaaatagcaataaaacttgatgacaaaccaatgaaaacaattaatgtcaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacttTTGGGCCACTGAAGGGTGG---GGTGAACTATTTTTATCGTTGTTGTAGTAATGTGCCGTAGT----CCTATGCATTTCATG
gi|32 : ttAAA---AA-CACAT-TCTTATAATAGCGTAA----ACGTCAATA-AA-AACATG-GCTGAT
gi|4 : cAATTTCTTGTCAGATTATGATATAAGGATTTACCAATGAGCACATTTACTAATG-----ATATTA-TA-TT-TT-CCACAATGACTCTGTGTTTCTGGA-----------------------TATG--AT---TTTGATTATTTC---CGAAATAATCAAGTTCCATTCACACTTGTGTTGCC----ATTTTGAAAATAACAGTGAC-----TGGTTTATAATATTTT-CATGAACTTTAATTATTTGTAAAATGTGAAAACT
gi|5 : tgacagtattctagtcaatggagtaaaataatggggtactggtcctgaccaatttgtaggagtatttattcaattgagtcacagtataacatcgaagcagctgtcagaccacagcagaacagtgtcactttaattagtggttttgatgactaaataaatcaaactatttaagagtgattataattttttttgcataaacaacatccttttaattttcagcataaaatatcagccctggactataaccatacccaacgaattgaccagaatgaaaaaaaatagcaataaagcttgacgactaaccagggtaattaagttaatgtcttatcatttacagttttgcccattatatcgtcttccttaGTAATGTAGTTTTGACCAT--TAAAATCATATAAAACAAAATATTTGAAATAAAGAT-CAATTTAGTTGATAATAAATCAAACAGCCTATGGTAGATAGAGAGAAAGAAAGAAACGAACAAACATCATAGAATAACACAGGTTGCCTCAATTATACTTTTGAAACGACCCCCA-TATAATGTGTTTCTGAC-----C-AAATTGGTTGAACAATGCAAA---AAAAAAC----------AAGCAAGTGGTGTTAAAT-TTTTTTTAGTCTTTTGAATGTATTTCGTCATTATAAATAATACTTTAAATGT-------GACAGGCATACTAGAAG-TTCTG--A-TTTGAAAGCACATATA-TAAAAAA--AAAA--------CAT-TTGTAAAACAGCGTAA----ATGTAAAAA-AATA--AAG-ACCGATTTTCACAAATGGCGAAAGAGAAAAGCACAA-A-TGTTGACGGTAGTGTGAGTTCAAA-TCAATATTTTGAATAAACATAGCAAGTGTATTACCTTTTTAAAGTATTCCAACCTTACTTTAGT---TT----ATATAAATAATTCTGAATCAAACATTA--TTGAAATTGTCATATTGAGACC-ATAATCTCAATTT-TTCACAGTATTTTAgataaccag
gi|6 : TAGTATAACACGTGTTGCCTCCCTTCTACTTTTAGTACGACCCCCAATATAATGTGTTTCTAACGACTTC-AA--CAC---AAC--TGCAA-----ACAATC----------GAACAAGTTGTGTTAAAC-AATCT--AATATATTGTATGTATTTCGTCATTATAGATAATAATTTAAATGTTAAATGTGGCTGGCGTACTAGAAG-T------------ATAGCACATGTA-TAAAAAA------------CACATATGGTA-AATGGCGTAA----ACGTCAATAGAA-A--ATT-ACTTATTTTCA-GAATGATAAAAGAGG-AAACAAGATA-CATTTACCTTTGCGCGAATTCAAA-TCGATATTTTTAATAAACAAAGCAAGTACACTACCTTTTTAAAGTATTCCAGCATTTCTTTTAT----A----ATATAAA--------------ATGTCAATCTGAAATCGTGGTTTTGATAAC-ACAGTTTCAATTT-TCCCCTGCATTTTACCAAAATAA-TGGC-GGC-GTTAT-TATTCTAAT------CGTCGCTTGGGCCGCTGAAGGA-GGTGGGG---TCTATTTCTACCGTTGTCATAGTAATGCGCAGTAGT----CGTCTGCATTTCATACTTTTTTATTTGAAACTGTATGCTTTGA
gi|7 : GTTGCATCCCTTCTACTTTTGAGACGACCCCCA-TAAAATGTGTTTCTGAG-----C-AAATTGTGTGAAA--TTCAACTTTCACCACCGAAAAATATTGAACAAGTGGTGTTAAACAAATCT--AATATTGTGTATGT-TTTCGTCGTTATAGTTACGACTTTAAATGT-------GGCAGGCATACTAGAAA-TTATG--ATTTT-ATAGCAAAAGTATTAAAAAG--GAAA---GATCACAT-TCGTATAAAAGCTTAG------------------------------TTTTACGAACAACGAATGAGGTAAGCACAA-A-CATTGCCCTTTGCGCGAGTTCAAC-TCGATATTTTGAATAAACGAAGTAGTTATACTAACTTTAAAAATTATTCCAGCCTTTCTTTTATAAGTACGAGGTATAATTAATTCCGGATCGAACGTCAATC-----TC----TAATGAGACC-ACAATTT-GATTTATTTCCTGCATCTt
gi|7 : aATTT--ATTTCCTGCATCTCTTGGGATGCTGGAAAG-GG---GG---A-TATTTGTACATATGTTATACTAATTCGCAGTAGT----CATCTGCAATTCATGcttgggatgctggaaagggggatatttgtacatatgttatactaattcgcagtagtcatctgcaattcatg
gi|8 : agttgcatcccttctacttttgagacgacccccataaaatgtgtttctgagcaaattgtgtgaaattcaactttcaccaccgaaaaatattgaacaagtggtgttaaacaaatctaatattgtgtatgttttcgtcgttatagttacgactttaaatgtggcaggcatactagaaattatgattttatagcaaaagtattaaaaaggaaagatcacattcgtataaaagcttagttttacgaacaacgaatgaggtaagcacaaacattgccctttgcgcgagttcaactcgatattttgaataaacgaagtagttatactaactttaaaaattattccagcctttcttttataagtacgaggtataattaattccggatcgaacgtcaatctctaatgagaccacaatttgTAATTTTTTGTCATAATAT-------------ACCAGTGAGCTCATTTACTATTT---TTATAATAATT-TT-TT-CCACATTGACTCCGTGTTTC--GA-----------------------AGT
gi|9 : atcgtgacatatcagcctctttggaacacaacaaacatgacatacttttccttctaatagatattggtgatgtctattttagataaggttttttgttgatggtgtaaaataaatgagtactgaccaatttataggattacagtactgatcattgcttaagactactaaatagatttaactatttagacagtaaataatatcaaacatgctgcataaataacatcatgcaaatcttcagcataaaatattaacaaattatgatatacccaagcaaattgactagaatggaaaaaatagcaataaaacttgacgactaaccatggaaattagtcattgtctgatcattcacagttttgcccatcatgtcttggtcttttttTAATTTCTTGTCAGAATATGAT-CGCAGATTTACCAATGAGCTCATTTACTACTGGTATCATAATA-TGTTT-TT-CCACAACGATTTCGTGTTTT--GA-----------------------AATA--AACAATTTG-TTGTTCCTTGCAAAAT------GTAGAATTTGCACTTGGGATACC----AATTTGAAAATAACATTGAC-----TGGTTTATAAC-TTTT-CACAAACTTTAAGCATATGT-AAAGACGAAAAAT-CAATA-----------------------------ACACTATTCCCACAATATAACAGATTATTTAAACAGCAAAACGGCAGT-ATTCC-TTCCCGTTACTGATATG---AAACTGTTTACAACTGAAATTCTGTTACAGATTATTGGAAGTAATCATAAGTGATACTTTCAGATCATTATTGTTTTATTTCGGCA------------TATTCTTTCA----------------------TCATCTTGAAAATCAATTGTATGCATATTCAAAATGAAGTACAAATGTTGTT--TTTTTTTCAATTACCGGTAgt
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): AAAACTAAAAAATGAAATGAAAATAAACGAGGTAACTTAAATAAAACAAAAATCATAGTCCTGAATGACCTGAGGGATGGCTTTGCTACTTGGACAAATTCACTAATAATAGGATTTGAGCAATTGAAAAACTTGTTCGACTGAGCTACTGTACTGTGTAACTCAAAGTAGAACTGTCAACAGTGTCACTTTGATCAATGGTTTTGACGACTAAATAATTTTAGCTATCTAAGACAGTGAGTATAAAACATGCTGCATAAACAACACCTCAGCATAAAATATTAGCAGACTATGACCGTAACCAAACAAATTGACCAGAATAGAAGAAATAGCCATAAAGCTTGATGATGAACCATGGAAATCA
Unaligned ( gi|18 ): GACAGCACTCTAGATAAAGTTAAAGGCAATGTAGTAAGGAGTATTCAATTCAGTTACTGTACGCTGGCCAAAGCAGTACAGTGTCATTTTGATGACTAAATAAATTCTACTATTTAGACAATGATTATAAAATTTTAATTATAAAACATGCTGTAAAAAACAACACCCTTTTAAGTTTAGTTGGCTATGACCATACACAAACAAATTGACTAGAATGAAAATAGTAACAATA
Unaligned ( gi|23 ): CTTCAAATAATCAGTTGTTTTGACGACTAAATAAATTTATGTAACTATTTAAGACAATGAATATAAAACATGCTGTATAAACATTTTCAGCATAAAATATTAGCCGACTATGACCATACCTAAACAAAGTGATGACAAACCATGAAATCAGTTAATGTCTAATTG
Unaligned ( gi|27 ): GCACTTCAGAACCCGGTGGATTTTGCTGATCGTATTGCAGCACAAAGAGAATATATTTGAGGACGACTTCCGATGTCCTGGGTTGACAGAAACATCACCAGCG
Unaligned ( gi|28 ): CACGAAACCGACGAACGATAGATAAGTCACAATACATCATGACATAAGTCTCTTAGGAACACAACAAACACGACATACTTTTAACTTCT
Unaligned ( gi|30 ): ACAGTATAACAAAGATTACAGAGCAAAATTAAACCTCTGACAATGGCTATAGAACGCGTCGCTCCAGTCGCCTTCCAAAAA