lowQualScore : 1111111111111111111111111111111
lowQualScore : 1 22222 111 22222222222 0000000000000000000000000000000 11 111 1 111 11111111 3333333333333333333333 11 1 11111 1 1
lowQualScore : 1 7 11111 1 333 2 6 55555555555 55 2 2 5 1111111111111111111111111111111 55 000 2 2 5 6 333 4 888 2 0 5 77777777 0000000000000000000000 00 5 5 33 8 88888 2 3 1
lowQualScore : . . ..... . ... . . ........... .. . . . ............................... .. ... . . . . ... . ... . . . ........ ...................... .. . . .. . ..... . . .
lowQualScore : 4 3 55555 4 666 7 0 99999999999 55 5 5 0 6666666666666666666666666666666 88 888 6 9 3 3 444 9 999 9 1 7 33333333 3333333333333333333333 22 3 0 77 0 99999 7 2 4
consensus : NNNNNCTCAAAAAAG-AAACTATA-C---ATGN--TGTATC-TGCTTATAAAACACC----------CATATA-TTTTATTCAA-TGTTTCG-A-T---AACATAT-A--T---TATAT-TATC-T-AAACCTA-TAC---TACGAA-GG-TTTGTTATCACTAAACAAATT-G-TGTATTTATTGAACC--ACTC-GACAG-TTA------A-TCCC-ATTTCTCTA--TA----G-AACG-GCCTTATGAAAATATTTCAAATCAAAAC--CA-TGT----A-TAGTTTCTTTTTTTGAGTTAGTATAT
Reference ( gi|5 ) : ACTACCTCAAACAAA-AAACTATA-A---ACGT--TGTATC-TGCTTGTAAAACACC----------CATATA-TTTTATTCAA-TGTTTCG-A-T---AGCATAT-A--T---TATAT-CATCGTAAAACCTA-AAC---TACGAA-GG-TTTGTTATCACTAAACAAACT-G-TGAATTTATTGAACC--TCTC-GACAG-TTA------A-TCCA-ATTTCTCTA--TA----G-AACA-GCCTGATGAAAATATTTCAAATCAAAAC--CA-TAA----A-TAGTTTCTTTTTTTGAGTAAGTATAT
gi|8 : CTCAAAAAAG-AAACTAGA-C---ATGG--TGTATC-TGGTTATAAAACATG----------CATATA-TTTTATTCAA-TGTTTCG-A-T--------------T---CATAT--ATCATTAAACCTA-TAT---TAGGAAAGG-TTT---ATCAC-----AAA------------ATTGAACC--ACTC-GACAG-TTA------A-TCCC-ATTTCTAT---TA----T-AACG-GCTTTATGAAAATATTTCAAATCAAAAA--CA-TGT----A-TAGTTTC-TTTCTTGAGTTAGTATAT
gi|10 : caaCTCAAAAAAG-ATACT-TA-AC--ATGA--TGTAAC-TGCTTATAAAACACT----------AATATA-TTTTAGTCAG-CG-TTCG-A-TTCAAACATAT----------TAT-T------AAACCTT-TAC---TAAGAA-TG-TTTGTTATCATTCAACAAATTAG-T--ATTTATTGAACC--ACTC-GACAG-TTA------T-TTCC-ATTTATATA---A----T-AACG-GCCTTATGAAATTATTTTAAATCAAAACAATA-TAA----ATTAGTatatat
gi|3 : aaCTCAAAAAAAGAAACTATA-C---ACCG--TGTATC-TGCTTATAAAACACC----------AAGATA-GTTAATTTAA-TGTTTCGAA-TCA-AACATGTAA--C---TATA---ATT---AAACATA-TAC---TATGCA-GA-TGCGTTGTCAATAAGCGAATT-G-TATATTTATTTAGCCATTTTC-A--AG-TTA------ATTCCA----TGTCTA--TA----G-a
gi|13 : tataagttagtttaatatatgacttgacctcaagttggacatatacaaaCTAAAAAACA-AAACTATACAGTTACGT--TGTATC-TGCTTATGAAACACC----------CATATG-TTTT-TTTAATTGTTTCG-A-----ATCATAT------------T-CA--GTCAAACCTtttgcacgagcatgtatggtttctgttttagttcgtgtgtataa
gi|9 : tttatcaTTAAACAAAGAAACTGTA-C---ATAA--TGTATC-TGCTAATGAAACACT----------CATATA-TTTTATTCAA-TGTTTCC-A-T----TCATA---------TATAT-TATC---AAACATA-CAC---CACTTA-GG-TTTGTTCTCACTAAACACACT-G-TG--TTTATTGTACC--ACTC-GATAG-TTA------C-TGCC-ATT--TCTA--TA----G---------T-ATG-AAATATTTCAAATTAAAAC--CA-TGT----A-TAGTT--TTTATTTGAGTCAGgtgaacacattgcgtatttactgaacgtgcatgaaaatatttcaaatcaaaaccatgtatagtttctttttagagttagtataatat
gi|6 : tcaAAAAAAG-AAACTATA-C---ATGA--TGCATC-TGCTTATACTATACT----------CATAT-----CATTCAA-TGTTTTG-A-TT--AATATAT-G--T---TATTT---------AACTTA-TAC---TAAACA-GT-TTTGTTATCAATAAACAAATT-G-TGGATTTATCAAACC--ACTC-GACAT-TTAGATCTTA-TCCC-ATTTCTTT---TG----T-AACA-GCTTTATGAAAATATTTCAAATC-AAAC--CATTAT----A-TATATTC-TTTCTTGAGTTAG
gi|7 : AAAAAG-AAACTATA-C---ATGA--TGCATC-TGCTTATACTATACT----------CATAT-----CATTCAA-TGTTTTG-A-TT--AATATAT-G--T---TATTT---------AACTTA-TAC---TAAACA-GT-TTTGTTATCAATAAACAAATT-G-TGGATTTATCAAACC--ACTC-GACAT-TTAGATCTTA-TCCC-ATTTCTTT---TG----T-AACA-GCTTTATGAAAATATTTCAAATC-AAAC--CATTAT----A-TATATTC-TTTCTTGAGT
gi|18 : AAA-AAAGTATA-G---ACGC--TGTATC-TGCTTATAAAACGTC----------CA-------TTATTCAA-TGTTTCG-A-TTCAAATATAT-AAGTACACATAT-TATC-------------C---TACGAA-GG-TTTTTTTTCAt
gi|14 : tgctaactaAAG-AAACTATA-C---ATGC--TGTATC-TGCCTATAAAGCTTG----------CATCTG-TTTTATTCAA-C-TTATG-A-T---A--ATAT-T--T---TAAAT-C-----AAAACCgc
gi|4 : ga-AAACTGTA-C---ATGG--TGTATC-TTCTTATATAACACC----------CATATA-TTTTATACAA-TGTTTTG-A-T----TCATA---------TATAT-TAT--TAAAG-CTATAAG---T-CGAA-GG-TTTGTTATCGCTAAAC-AATT-T-TATATTTTTTAAATC--ACTC-TACAG--TA------A-TCCC-ATTTCTATATTTT----G-CATATGCATGA--AAAATATTTCATATCAAAAC--CA-TGC----A-TAGTTCCatatatagtttctttttataatttgtttactataaaattaacacctcgcagtaaatataatcc
gi|20 : atatgttggtctgaaaacatatttatttatatcatagttgatctatactgactcaatgcat-AAACTACA-C---ATGA--TGTATCTTGTTTA-AAAACACG----------CACGTATTTTTTTTCAA-TATTTCT-A-T---
gi|2 : ATTATA-C---ATGA--TGAATC-TGCTTATAAAGTACCTATTATAAAATATATA-TGTTATTCAA-TGTTTCG-ACT---CATATAT-A--T---T-TAT---TTGTTAAACCTA-TACTAGTACAAA-GGTTTTGTTATCACCAAACAAAGT-G-TGTATTTATTGAACC--ATTC-TACAGTTTA------C-TCCA----TTTCTA--TA----GAAACG-ACTTTATGAAAATATTTCAAATCGAAAC--CA-TGT----A-TAATTtc
gi|1 : atatgtgacttattcaaatatatcattaatcgaaaatattggttcatatattttaactcaagatatatATTATA-C---ATGA--TGAATC-TGCTTATAAAGTACCTATTATAAAATATATA-TGTTATTCAA-TGTTTCG-ACT---CATATAT-A--T---T-TAT---TTGTTAAACCTA-TACTAGTACAAA-GGTTTTGTTATCACCAAACAAAGT-G-TGTATTTATTGAACC--ATTC-TACAGTTTA------C-TCCA----TTTCTA--TA----GAAACG-ACTTTATGAAAATATTTCAAATCGAAAC--CA-TGT----A-TAATTgttta
gi|21 : tatatgtgacttattcaaatatatcattaatcgaaaatattggttcatatattttaactcaagatatat---ACGTGATGCATC-TGCTTATAAAACACC----------CATATA-GTTTACTCAA-TGGTTCA-A-T---gttta
gi|11 : T--TGTATC-TGCTTATAAAACAC------------ATATA-TTTCATTCAA-AATTTCG-A-T----TCATAT-A--T------AT-TATT-TAA--CCTA-TAC---CTTGAG-CG-TTTGTTATCACTAAACAAATT-A-TATATTTATTGAACC--ACTCTGA-AG-TTA------A-TTCC-ATT--TCCA--TA----GCAACG-GCCTTAAGAACAT-TTTTAAATCAAACC--CA-TGT----A-TAGTTTCTTTTtt
gi|15 : ATATACTTTTATCCAA-TGTTTCA-A-T--------------T---CATATGCATCAATAAACATA-TAA---TATGAA-GG-CTTGTTATCATTTAACAAGTT-T-TGAATTTATTAAACT--GCTC-AACAG-TTT------A-TTCC-ATTT---TA--TT----GTAACA-TCCTTATGAACATA--TCAAAa
gi|12 : AAACCTA-AAC---TATGAA-GG-TTTGTTATCACAAAACAAACT-A-TGTATTCATTAAACC--AGTC-GACAG-TTT------A-TCTC-ATTTCTT----TA----GTAACG-GCCTTGTGAAAATA-TTCAAATGAAAAC--CA-TGT----A-TAGTTa
gi|16 : gttctagtatgcatgtacaatgaaatGAA-GG-TTTGTTATCACTAAAC-AACT-GACGTATTTATCGAACC--ATTT-GA-AA-TTA------A-ATCACATTT---TA--TAGTTTG-CACATGC---GTGTAAATATTTCAAATAAAAAC--CATTAATTTTA-TAGTTCCTTTTTTCAAGTAagtatatatcaatctatttattttgtaacatttgtgtaa
gi|17 : -TTTGTTGTCACTAAACAAATT-G-TGTATTTATTGATCA--ACTC-TACAG-TTA------A-TCTC-ATATCT-----------G-CACGTGC---ATGCACATGTTTAAAATCAAAAC--CG-TGC----A-TAGTTTATTTTTTTG
gi|19 : aCTTATGAAAACATTTCAAATCAAAAC--GA-TAT----A-TAGTTTCATTTTTTGAG
gi|14 : tttcataacgaCTTATGATAATATTTTAAATCAAAAC--CA-TAT----A-TAGTTTCTTTTTgttttatatttaatgatataagtact
gi|13 : gaaagaaactatacatgctgtatctgcctataaagcttgcatctgttttattcaaATGAAAATATTTCAAATCAAAAC--CA-TGT----A-TAGTTTC-TTTTTAGAGTTAGTATAataatttgtttactataaaattaacacctcgcagtaaatataatcc
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|22 ): TATATGTAATACTCGTGATATGTTGTTGGAAATGCTCTATTTCTAATTATAT
Alignments
lowQualScore : 22222222222 555555555555555555555555555555555 111111 22222222222222222 1 11111
lowQualScore : 3 3 5555 1 2 33333333333 4 2 2 4 000000000000000000000000000000000 2 2 999 2 2 4 0 1 2 555555 22222222222222222 9 1 2 00000 333 8 0
lowQualScore : . . .... . . ........... . . . . ................................. . . ... . . . . . . ...... ................. . . . ..... ... . .
lowQualScore : 1 1 7777 0 5 77777777777 7 4 4 7 777777777777777777777777777777777 5 5 333 6 5 7 6 8 7 333333 66666666666666666 4 1 2 00000 999 1 5
consensus : NNNNNCTCAAA-A-AAGAAACTATACA----TGATGTATC-TGCTTATAAAACACC----------CATATA-TTTTATTCAA-TGTTTCG-A-T---AACATAT-A--T---TATAT-T--ATC--TAAA-CC-TATAC---TACGAA-GG-TTTGTTATCACTAAACAAATTGTGTATTTATTGAACCACTC-GACAGTTA------ATCCCATTTCTCTA--TA----G-AACG-GCCTTATG-AAAATATTTCAAATCAAAACCA-----TGTA---TAGTTTCTTTTTTTGAGTTAGTATAT
Reference ( family-5493 ) : NNNNNCTCAAA-A-AAGAAACTATACA----TGNTGTATC-TGCTTATAAAACACC----------CATATA-TTTTATTCAA-TGTTTCG-A-T---AACATAT-A--T---TATAT-T--ATC--TAAA-CC-TATAC---TACGAA-GG-TTTGTTATCACTAAACAAATTGTGTATTTATTGAACCACTC-GACAGTTA------ATCCCATTTCTCTA--TA----G-AACG-GCCTTATG-AAAATATTTCAAATCAAAACCA-----TGTA---TAGTTTCTTTTTTTGAGTTAGTATAT
gi|1 : CTCAAG-A-TATATATTATACA----TGATGAATC-TGCTTATAAAGTACCTATTATAAAATATATA-TGTTATTCAA-TGTTTCG-ACT---CATATAT-A--T---T-TAT-T--TGT--TAAA-CC-TATACTAGTACAAA-GGTTTTGTTATCACCAAACAAAGTGTGTATTTATTGAACCATTC-TACAGTTT------ACTCCATT--TCTA--TA----GAAACG-ACTTTATG-AAAATATTTCAAATCGAAACCA-----TGTA---TAATT
gi|10 : tatatgtgacttattcaaatatatcattaatcgaaaatattggttcatatattttaaCTCAAA-A-AAGATACTTAACA----TGATGTAAC-TGCTTATAAAACACT----------AATATA-TTTTAGTCAG-CG-TTCG-A-TTC-AA-ACAT-A--T---TAT-----------TAAA-CC-TTTAC---TAAGAA-TG-TTTGTTATCATTCAACAAATTA-GTATTTATTGAACCACTC-GACAGTTA------TTTCCATTTATATA---A----T-AACG-GCCTTATG-AAATTATTTTAAATCAAAACAA-----TATAAATTAGTgttta
gi|11 : aaTGTATC-TGCTTATAAAACAC------------ATATA-TTTCATTCAA-AATTTCG-A-T---T-CATAT-A--T------AT-T--ATT--TAA--CC-TATAC---CTTGAG-CG-TTTGTTATCACTAAACAAATTATATATTTATTGAACCACTCTGA-AGTTA------ATTCCATT--TCCA--TA----GCAACG-GCCTTAAG-AACAT-TTTTAAATCAAACCCA-----TGTA---TAGTTTCTTTTa
gi|12 : t--TAAA-CC-TAAAC---TATGAA-GG-TTTGTTATCACAAAACAAACTATGTATTCATTAAACCAGTC-GACAGTTT------ATCTCATTTCTT----TA----GTAACG-GCCTTGTG-AAAATA-TTCAAATGAAAACCA-----TGTA---TAGTTa
gi|13 : gttctagtatgcatgtacaatgaaaCTAAAA-A-ACAAAACTATACAGTTACGTTGTATC-TGCTTATGAAACACC----------CATATG-TTTT-TTTAATTGTTTCG-A-------------A--T---CATAT-TCAGTC---AAA-CC-TGT--------GAA------------CAC-------ATTGCGTATTTACTGAACagtatatatcaatctatttattttgtaacatttgtgtaa
gi|13 : tttatca----G-AACGTGC---ATG-AAAATATTTCAAATCAAAACCA-----TGTA---TAGTTTC-TTTTTAGAGTTAGTATAgtgcatgaaaatatttcaaatcaaaaccatgtatagtttctttttagagttagtataatat
gi|14 : tttatcactaaaaaacaaaactatacagttacgttgtatctgcttatgaaacacccatatgtttttttaattgtttcgaatcatattcagtcaaacctgtgaacacattgcgtatttact-A-AAGAAACTATACA----TGCTGTATC-TGCCTATAAAGCTTG----------CATCTG-TTTTATTCAA-C-TTATG-A-T---A--ATAT-T--T---TAAAT-C--A-----AAA-CCATATAatat
gi|14 : gCTTATG-ATAATATTTTAAATCAAAACCA-----TATA---TAGTTTCTTTTTtagtttctttttataatttgtttactataaaattaacacctcgcagtaaatataatcc
gi|15 : gaaagaaactatacatgctgtatctgcctataaagcttgcatctgttttattcaaATATACTTTTATCCAA-TGTTTCA-A-T--------------T---CATATGC--ATCAATAAA-CA-TATAA---TATGAA-GG-CTTGTTATCATTTAACAAGTTTTGAATTTATTAAACTGCTC-AACAGTTT------ATTCCATTT---TA--TT----GTAACA-TCCTTATG-AACATA--TCAAAataatttgtttactataaaattaacacctcgcagtaaatataatcc
gi|16 : GAA-GG-TTTGTTATCACTAAACAACTGACGTATTTATCGAACCATTT-GAAATTAA------ATCACATTT---TA--TAGTTTG-CACATGC---GTG-TAAATATTTCAAATAAAAACCATTAATTTTA---TAGTTCCTTTTTTCAAGTa
gi|17 : -TTTGTTGTCACTAAACAAATTGTGTATTTATTGATCAACTC-TACAGTTA------ATCTCATATCT-----------G-CACGTGC---ATG-CACATGTTTAAAATCAAAACCG-----TGCA---TAGTTTATTTTTTTGa
gi|18 : a-A-AAAAAAGTATAGA----CGCTGTATC-TGCTTATAAAACGTC----------CA-------TTATTCAA-TGTTTCG-A-TTCAAATATAT-AAGTACACATAT-T--ATC--------------C---TACGAA-GG-TTTTTTTTCA
gi|19 : tgctaact-AACG-AC-TTATG-AAAACATTTCAAATCAAAACGA-----TATA---TAGTTTCATTTTTTGAGGTTTTATATgc
gi|2 : tttcatCTCAAG-A-TATATATTATACA----TGATGAATC-TGCTTATAAAGTACCTATTATAAAATATATA-TGTTATTCAA-TGTTTCG-ACT---CATATAT-A--T---T-TAT-T--TGT--TAAA-CC-TATACTAGTACAAA-GGTTTTGTTATCACCAAACAAAGTGTGTATTTATTGAACCATTC-TACAGTTT------ACTCCATT--TCTA--TA----GAAACG-ACTTTATG-AAAATATTTCAAATCGAAACCA-----TGTA---TAATTttaatgatataagtact
gi|20 : atatgtgacttattcaaatatatcattaatcgaaaatattggttcatatattttaaAAACTACACA----TGATGTATCTTGTTTA-AAAACACG----------CACGTATTTTTTTTCAA-TATTTCT-A-T---gttta
gi|21 : ACG----TGATGCATC-TGCTTATAAAACACC----------CATATA-GTTTACTCAA-TGGTTCA-A-T---tc
gi|3 : -----TGTA---TAGTTTCTTTTTTTGAGTTTGTATATtt
gi|3 : tataagttagtttaatatatgacttgacctcaagttggacCTCAAA-AAAAGAAACTATACA----CCGTGTATC-TGCTTATAAAACACC----------AAGATA-GTTAATTTAA-TGTTTCGAA-TCA-AACATGTAA--C---TATA-----AT---TAAA-CA-TATAC---TATGCA-GA-TGCGTTGTCAATAAGCGAATTGTATATTTATTTAGCCATTT-TCAAGTTA------ATTCCA--TGTCTA--TA----G---------TT-TG---------------CACGAGCA-----TGTA---TGGTTTCTGTTTT--AGTTCGTGTGTccgtgtatctgcttataaaacaccaagatagttaatttaatgtttcgaatcaaacatgtaactataattaaacatatactatgcagatgcgttgtcaataagcgaattgtatatttatttagccattttcaagttaattccatgtctatagtttgcacgagcatgtatggtttctgttttagttcgtgtgtataa
gi|4 : tataagttagtttaatatatgacttgacctcaagttggacatatacaaaCTCAAT-G-CATAAACTGTACA----TGGTGTATC-TTCTTATATAACACC----------CATATA-TTTTATACAA-TGTTTTG-A-T----TCATA---------TATAT-T--AT---TAAA-GC-TATAA---GTCGAA-GG-TTTGTTATCGCTAAAC-AATTTTATATTTTTTAAATCACTC-TACAG-TA------ATCCCATTTCTATATTTT----G-CATATGC---ATGAAAAATATTTCATATCAAAACCA-----TGCA---TAGTTCCataa
gi|5 : atatgttggtctgaaaacatatttatttatatcatagttgatctatactgaCTCAAA-C-AAAAAACTATAAA----CGTTGTATC-TGCTTGTAAAACACC----------CATATA-TTTTATTCAA-TGTTTCG-A-T---AGCATAT-A--T---TATAT-C--ATCG-TAAAACC-TAAAC---TACGAA-GG-TTTGTTATCACTAAACAAACTGTGAATTTATTGAACCTCTC-GACAGTTA------ATCCAATTTCTCTA--TA----G-AACA-GCCTGATG-AAAATATTTCAAATCAAAACCA-----TAAA---TAGTTTCTTTTTTTGAGTAAGTATAT
gi|6 : actacAAA-A-AAGAAACTATACA----TGATGCATC-TGCTTATACTATACT----------CATAT-----CATTCAA-TGTTTTG-A-TT--AATATAT-G--T---TAT-T-T--A-------A-CT-TATAC---TAAACA-GT-TTTGTTATCAATAAACAAATTGTGGATTTATCAAACCACTC-GACATTTAGATCTTATCCCATTTCTTT---TG----T-AACA-GCTTTATG-AAAATATTTCAAATC-AAACCAT----TATA---TATATTC-TTTCTTGAGTTAG
gi|7 : AA-A-AAGAAACTATACA----TGATGCATC-TGCTTATACTATACT----------CATAT-----CATTCAA-TGTTTTG-A-TT--AATATAT-G--T---TAT-T-T--A-------A-CT-TATAC---TAAACA-GT-TTTGTTATCAATAAACAAATTGTGGATTTATCAAACCACTC-GACATTTAGATCTTATCCCATTTCTTT---TG----T-AACA-GCTTTATG-AAAATATTTCAAATC-AAACCAT----TATA---TATATTC-TTTCTTGAGTT
gi|8 : CTCAAA-A-AAGAAACTAGACA----TGGTGTATC-TGGTTATAAAACATG----------CATATA-TTTTATTCAA-TGTTTCG-A-T---T-CATAT-A--T---CAT-----------TAAA-CC-TATAT---TAGGAAAGG-TTT---ATCAC-----AAA----------ATTGAACCACTC-GACAGTTA------ATCCCATTTCTAT---TA----T-AACG-GCTTTATG-AAAATATTTCAAATCAAAAACA-----TGTA---TAGTTTC-TTTCTTGAGTTAGTATAT
gi|9 : caaTTAAACA-AAGAAACTGTACA----TAATGTATC-TGCTAATGAAACACT----------CATATA-TTTTATTCAA-TGTTTCC-A-T----TCATA---------TATAT-T--ATC---AAA-CA-TACAC---CACTTA-GG-TTTGTTCTCACTAAACACACTGTG--TTTATTGTACCACTC-GATAGTTA------CTGCCATT--TCTA--TA----G----------TATG--AAATATTTCAAATTAAAACCA-----TGTA---TAGTT--TTTATTTGAGTCAGatatat
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): TATATGTAATACTCGTGATATGTTGTTGGAAATGCTCTATTTCTAATTATAT
Alignments
lowQualScore : 22222222222 555555555555555555555555555555555 111111 22222222222222222 1 11111
lowQualScore : 3 3 5555 0 2 33333333333 4 2 2 4 000000000000000000000000000000000 2 2 999 2 2 4 0 1 2 555555 22222222222222222 9 1 2 00000 333 8 0
lowQualScore : . . .... . . ........... . . . . ................................. . . ... . . . . . . ...... ................. . . . ..... ... . .
lowQualScore : 1 1 7777 7 5 77777777777 7 4 4 7 777777777777777777777777777777777 5 5 333 6 5 7 6 8 7 333333 66666666666666666 4 1 2 00000 999 1 5
consensus : NNNNNCTCAAA-A-AAGAAACTATACA----TGATGTATC-TGCTTATAAAACACC----------CATATA-TTTTATTCAA-TGTTTCG-A-T---AACATAT-A--T---TATAT-T--ATC--TAAA-CC-TATAC---TACGAA-GG-TTTGTTATCACTAAACAAATTGTGTATTTATTGAACCACTC-GACAGTTA------ATCCCATTTCTCTA--TA----G-AACG-GCCTTATG-AAAATATTTCAAATCAAAACCA-----TGTA---TAGTTTCTTTTTTTGAGTTAGTATAT
Reference ( family-5493 ) : NNNNNCTCAAA-A-AAGAAACTATACA----TGATGTATC-TGCTTATAAAACACC----------CATATA-TTTTATTCAA-TGTTTCG-A-T---AACATAT-A--T---TATAT-T--ATC--TAAA-CC-TATAC---TACGAA-GG-TTTGTTATCACTAAACAAATTGTGTATTTATTGAACCACTC-GACAGTTA------ATCCCATTTCTCTA--TA----G-AACG-GCCTTATG-AAAATATTTCAAATCAAAACCA-----TGTA---TAGTTTCTTTTTTTGAGTTAGTATAT
gi|1 : CTCAAG-A-TATATATTATACA----TGATGAATC-TGCTTATAAAGTACCTATTATAAAATATATA-TGTTATTCAA-TGTTTCG-ACT---CATATAT-A--T---T-TAT-T--TGT--TAAA-CC-TATACTAGTACAAA-GGTTTTGTTATCACCAAACAAAGTGTGTATTTATTGAACCATTC-TACAGTTT------ACTCCATT--TCTA--TA----GAAACG-ACTTTATG-AAAATATTTCAAATCGAAACCA-----TGTA---TAATT
gi|10 : tatatgtgacttattcaaatatatcattaatcgaaaatattggttcatatattttaaCTCAAA-A-AAGATACTTAACA----TGATGTAAC-TGCTTATAAAACACT----------AATATA-TTTTAGTCAG-CG-TTCG-A-TTC-AA-ACAT-A--T---TAT-----------TAAA-CC-TTTAC---TAAGAA-TG-TTTGTTATCATTCAACAAATTA-GTATTTATTGAACCACTC-GACAGTTA------TTTCCATTTATATA---A----T-AACG-GCCTTATG-AAATTATTTTAAATCAAAACAA-----TATAAATTAGTgttta
gi|11 : aaTGTATC-TGCTTATAAAACAC------------ATATA-TTTCATTCAA-AATTTCG-A-T---T-CATAT-A--T------AT-T--ATT--TAA--CC-TATAC---CTTGAG-CG-TTTGTTATCACTAAACAAATTATATATTTATTGAACCACTCTGA-AGTTA------ATTCCATT--TCCA--TA----GCAACG-GCCTTAAG-AACAT-TTTTAAATCAAACCCA-----TGTA---TAGTTTCTTTTa
gi|12 : t--TAAA-CC-TAAAC---TATGAA-GG-TTTGTTATCACAAAACAAACTATGTATTCATTAAACCAGTC-GACAGTTT------ATCTCATTTCTT----TA----GTAACG-GCCTTGTG-AAAATA-TTCAAATGAAAACCA-----TGTA---TAGTTa
gi|13 : gttctagtatgcatgtacaatgaaaCTAAAA-A-ACAAAACTATACAGTTACGTTGTATC-TGCTTATGAAACACC----------CATATG-TTTT-TTTAATTGTTTCG-A-------------A--T---CATAT-TCAGTC---AAA-CC-TGT--------GAA------------CAC-------ATTGCGTATTTACTGAACagtatatatcaatctatttattttgtaacatttgtgtaa
gi|13 : tttatca----G-AACGTGC---ATG-AAAATATTTCAAATCAAAACCA-----TGTA---TAGTTTC-TTTTTAGAGTTAGTATAgtgcatgaaaatatttcaaatcaaaaccatgtatagtttctttttagagttagtataatat
gi|14 : tttatcactaaaaaacaaaactatacagttacgttgtatctgcttatgaaacacccatatgtttttttaattgtttcgaatcatattcagtcaaacctgtgaacacattgcgtatttact-A-AAGAAACTATACA----TGCTGTATC-TGCCTATAAAGCTTG----------CATCTG-TTTTATTCAA-C-TTATG-A-T---A--ATAT-T--T---TAAAT-C--A-----AAA-CCATATAatat
gi|14 : gCTTATG-ATAATATTTTAAATCAAAACCA-----TATA---TAGTTTCTTTTTtagtttctttttataatttgtttactataaaattaacacctcgcagtaaatataatcc
gi|15 : gaaagaaactatacatgctgtatctgcctataaagcttgcatctgttttattcaaATATACTTTTATCCAA-TGTTTCA-A-T--------------T---CATATGC--ATCAATAAA-CA-TATAA---TATGAA-GG-CTTGTTATCATTTAACAAGTTTTGAATTTATTAAACTGCTC-AACAGTTT------ATTCCATTT---TA--TT----GTAACA-TCCTTATG-AACATA--TCAAAataatttgtttactataaaattaacacctcgcagtaaatataatcc
gi|16 : GAA-GG-TTTGTTATCACTAAACAACTGACGTATTTATCGAACCATTT-GAAATTAA------ATCACATTT---TA--TAGTTTG-CACATGC---GTG-TAAATATTTCAAATAAAAACCATTAATTTTA---TAGTTCCTTTTTTCAAGTa
gi|17 : -TTTGTTGTCACTAAACAAATTGTGTATTTATTGATCAACTC-TACAGTTA------ATCTCATATCT-----------G-CACGTGC---ATG-CACATGTTTAAAATCAAAACCG-----TGCA---TAGTTTATTTTTTTGa
gi|18 : a-A-AAAAAAGTATAGA----CGCTGTATC-TGCTTATAAAACGTC----------CA-------TTATTCAA-TGTTTCG-A-TTCAAATATAT-AAGTACACATAT-T--ATC--------------C---TACGAA-GG-TTTTTTTTCA
gi|19 : tgctaact-AACG-AC-TTATG-AAAACATTTCAAATCAAAACGA-----TATA---TAGTTTCATTTTTTGAGGTTTTATATgc
gi|2 : tttcatCTCAAG-A-TATATATTATACA----TGATGAATC-TGCTTATAAAGTACCTATTATAAAATATATA-TGTTATTCAA-TGTTTCG-ACT---CATATAT-A--T---T-TAT-T--TGT--TAAA-CC-TATACTAGTACAAA-GGTTTTGTTATCACCAAACAAAGTGTGTATTTATTGAACCATTC-TACAGTTT------ACTCCATT--TCTA--TA----GAAACG-ACTTTATG-AAAATATTTCAAATCGAAACCA-----TGTA---TAATTttaatgatataagtact
gi|20 : atatgtgacttattcaaatatatcattaatcgaaaatattggttcatatattttaaAAACTACACA----TGATGTATCTTGTTTA-AAAACACG----------CACGTATTTTTTTTCAA-TATTTCT-A-T---gttta
gi|21 : ACG----TGATGCATC-TGCTTATAAAACACC----------CATATA-GTTTACTCAA-TGGTTCA-A-T---tc
gi|3 : -----TGTA---TAGTTTCTTTTTTTGAGTTTGTATATtt
gi|3 : tataagttagtttaatatatgacttgacctcaagttggacCTCAAA-AAAAGAAACTATACA----CCGTGTATC-TGCTTATAAAACACC----------AAGATA-GTTAATTTAA-TGTTTCGAA-TCA-AACATGTAA--C---TATA-----AT---TAAA-CA-TATAC---TATGCA-GA-TGCGTTGTCAATAAGCGAATTGTATATTTATTTAGCCATTT-TCAAGTTA------ATTCCA--TGTCTA--TA----G---------TT-TG---------------CACGAGCA-----TGTA---TGGTTTCTGTTTT--AGTTCGTGTGTccgtgtatctgcttataaaacaccaagatagttaatttaatgtttcgaatcaaacatgtaactataattaaacatatactatgcagatgcgttgtcaataagcgaattgtatatttatttagccattttcaagttaattccatgtctatagtttgcacgagcatgtatggtttctgttttagttcgtgtgtataa
gi|4 : tataagttagtttaatatatgacttgacctcaagttggacatatacaaaCTCAAT-G-CATAAACTGTACA----TGGTGTATC-TTCTTATATAACACC----------CATATA-TTTTATACAA-TGTTTTG-A-T----TCATA---------TATAT-T--AT---TAAA-GC-TATAA---GTCGAA-GG-TTTGTTATCGCTAAAC-AATTTTATATTTTTTAAATCACTC-TACAG-TA------ATCCCATTTCTATATTTT----G-CATATGC---ATGAAAAATATTTCATATCAAAACCA-----TGCA---TAGTTCCataa
gi|5 : atatgttggtctgaaaacatatttatttatatcatagttgatctatactgaCTCAAA-C-AAAAAACTATAAA----CGTTGTATC-TGCTTGTAAAACACC----------CATATA-TTTTATTCAA-TGTTTCG-A-T---AGCATAT-A--T---TATAT-C--ATCG-TAAAACC-TAAAC---TACGAA-GG-TTTGTTATCACTAAACAAACTGTGAATTTATTGAACCTCTC-GACAGTTA------ATCCAATTTCTCTA--TA----G-AACA-GCCTGATG-AAAATATTTCAAATCAAAACCA-----TAAA---TAGTTTCTTTTTTTGAGTAAGTATAT
gi|6 : actacAAA-A-AAGAAACTATACA----TGATGCATC-TGCTTATACTATACT----------CATAT-----CATTCAA-TGTTTTG-A-TT--AATATAT-G--T---TAT-T-T--A-------A-CT-TATAC---TAAACA-GT-TTTGTTATCAATAAACAAATTGTGGATTTATCAAACCACTC-GACATTTAGATCTTATCCCATTTCTTT---TG----T-AACA-GCTTTATG-AAAATATTTCAAATC-AAACCAT----TATA---TATATTC-TTTCTTGAGTTAG
gi|7 : AA-A-AAGAAACTATACA----TGATGCATC-TGCTTATACTATACT----------CATAT-----CATTCAA-TGTTTTG-A-TT--AATATAT-G--T---TAT-T-T--A-------A-CT-TATAC---TAAACA-GT-TTTGTTATCAATAAACAAATTGTGGATTTATCAAACCACTC-GACATTTAGATCTTATCCCATTTCTTT---TG----T-AACA-GCTTTATG-AAAATATTTCAAATC-AAACCAT----TATA---TATATTC-TTTCTTGAGTT
gi|8 : CTCAAA-A-AAGAAACTAGACA----TGGTGTATC-TGGTTATAAAACATG----------CATATA-TTTTATTCAA-TGTTTCG-A-T---T-CATAT-A--T---CAT-----------TAAA-CC-TATAT---TAGGAAAGG-TTT---ATCAC-----AAA----------ATTGAACCACTC-GACAGTTA------ATCCCATTTCTAT---TA----T-AACG-GCTTTATG-AAAATATTTCAAATCAAAAACA-----TGTA---TAGTTTC-TTTCTTGAGTTAGTATAT
gi|9 : caaTTAAACA-AAGAAACTGTACA----TAATGTATC-TGCTAATGAAACACT----------CATATA-TTTTATTCAA-TGTTTCC-A-T----TCATA---------TATAT-T--ATC---AAA-CA-TACAC---CACTTA-GG-TTTGTTCTCACTAAACACACTGTG--TTTATTGTACCACTC-GATAGTTA------CTGCCATT--TCTA--TA----G----------TATG--AAATATTTCAAATTAAAACCA-----TGTA---TAGTT--TTTATTTGAGTCAGatatat
blockSeqs : C A GTTA T CTATTATAAAA C T A C TCAAATATATAAGTACACATATTATC A A TAG A A T T T GATCTT TCTATATTTTGC T C A TTAAT AAT T
blockSeqs : . . . . T T . . . AGCATATATTATATCATCGT . . . T . . T . GATCTT TTATAGTTTGC T C . T . T
blockSeqs : . . . . C . . . . CAAACATGTAACTATAATT . . . T . . T . . TCTCTATAGA T C . T . T
blockSeqs : . . . . G . . . . CATATATATTTATTTGTT . . . T . . T . . TATATAATA T C . . . A
blockSeqs : . . . . C . . . . TAATATATGTTATTTA . . . C . . A . . TCCATAGCA . C . . . T
blockSeqs : . . . . G . . . . TAATATATGTTATTTA . . . C . . T . . TCTTTAGTA . T . . . T
blockSeqs : . . . . C . . . . TCATATATATTATTT . . . T . . T . . TCTATAGAA . C . . . T
blockSeqs : . . . . C . . . . TCAAACATATTATT . . . C . . T . . TGTCTATAG . T . . . T
blockSeqs : . . . . C . . . . AATATTTTAAATCA . . . C . . T . . TCTTTTGTA . T . . . .
blockSeqs : . . . . C . . . . TCATATGCATCAAT . . . A . . T . . TCTTTTGTA . T . . . .
blockSeqs : . . . . T . . . . TCATATATATTATT . . . A . . A . . TCTATTATA . . . . . .
blockSeqs : . . . . T . . . . TCATATATATTATC . . . G . . G . . TTATTGTA . . . . . .
blockSeqs : . . G . . . . ATCATATTCAGTC . . . C . . G . . TCTATAG . . . . .
blockSeqs : . . T . . . . TCATATATCATT . . . . . . . . . TCTGC . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . .
blockSeqCons : C********** TCATATATATTATT******************* ***
originalCons : NNNNNCTCAAA-A-AAGAAACTATACA----TGATGTATC-TGCTTATAAAACACC----------CATATA-TTTTATTCAA-TGTTTCG-A-T---AACATAT-A--T---TATAT-T--ATC--TAAA-CC-TATAC---TACGAA-GG-TTTGTTATCACTAAACAAATTGTGTATTTATTGAACCACTC-GACAGTTA------ATCCCATTTCTCTA--TA----G-AACG-GCCTTATG-AAAATATTTCAAATCAAAACCA-----TGTA---TAGTTTCTTTTTTTGAGTTAGTATAT
finalCons : NNNNNCTCAAA-A-AAGAAACTATACA----TGATGTATC-TGCTTATAAAACACC----------CATATA-TTTTATTCAA-TGTTTCG-A-TTCATATATATTATT-------------------AAA-CC-TATAC---TACGAA-GG-TTTGTTATCACTAAACAAATTGTGTATTTATTGAACCACTC-GACAGTTA------ATCCCATTTCTCTA--TA----G-AACG-GCCTTATG-AAAATATTTCAAATCAAAACCA-----TGTA---TAGTTTCTTTTTTTGAGTTAGTATAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): TATATGTAATACTCGTGATATGTTGTTGGAAATGCTCTATTTCTAATTATAT
Alignments
lowQualScore : 22222222222 111111111 111111 22222222222222222 1 11111
lowQualScore : 3 3 5555 0 2 33333333333 4 2 2 5555 33 777777777 33 2 444 444 999 2 2 4 0 1 2 555555 22222222222222222 9 1 2 00000 333 8 0
lowQualScore : . . .... . . ........... . . . .... .. ......... .. . ... ... ... . . . . . . ...... ................. . . . ..... ... . .
lowQualScore : 1 1 7777 7 5 77777777777 7 4 4 0000 77 666666666 77 7 444 444 333 6 5 7 6 8 7 333333 66666666666666666 4 1 2 00000 999 1 5
consensus : NNNNNCTCAAA-A-AAGAAACTATACA----TGATGTATC-TGCTTATAAAACACC----------CATATA-TTTTATTCAA-TGTTTCGAT-T----CATATA--T---A-----TT--A-TT---AAAC---CTATAC---TACGAA-GG-TTTGTTATCACTAAACAAATTGTGTATTTATTGAACCACTC-GACAGTTA------ATCCCATTTCTCTA--TA----G-AACG-GCCTTATG-AAAATATTTCAAATCAAAACCA-----TGTA---TAGTTTCTTTTTTTGAGTTAGTATAT
Reference ( family-5493 ) : NNNNNCTCAAA-A-AAGAAACTATACA----TGATGTATC-TGCTTATAAAACACC----------CATATA-TTTTATTCAA-TGTTTCGAT-T----CATATA--T---A-----TT--A-TT---AAAC---CTATAC---TACGAA-GG-TTTGTTATCACTAAACAAATTGTGTATTTATTGAACCACTC-GACAGTTA------ATCCCATTTCTCTA--TA----G-AACG-GCCTTATG-AAAATATTTCAAATCAAAACCA-----TGTA---TAGTTTCTTTTTTTGAGTTAGTATAT
gi|1 : CTCAAG-A-TATATATTATACA----TGATGAATC-TGCTTATAAAGTACCTATTATAAAATATATA-TGTTATTCAA-TGTTTCGAC-T----CATATA--T---ATTTATTT--G-TT---AAAC---CTATACTAGTACAAA-GGTTTTGTTATCACCAAACAAAGTGTGTATTTATTGAACCATTC-TACAGTTT------ACTCCATT--TCTA--TA----GAAACG-ACTTTATG-AAAATATTTCAAATCGAAACCA-----TGTA---TAATT
gi|10 : tatatgtgacttattcaaatatatcattaatcgaaaatattggttcatatattttaaCTCAAA-A-AAGATACTTAACA----TGATGTAAC-TGCTTATAAAACACT----------AATATA-TTTTAGTCAG-CG-TTCGAT-T----CAAACA--T---A-----TT--A-TT---AAAC---CTTTAC---TAAGAA-TG-TTTGTTATCATTCAACAAATTA-GTATTTATTGAACCACTC-GACAGTTA------TTTCCATTTATATA---A----T-AACG-GCCTTATG-AAATTATTTTAAATCAAAACAA-----TATAAATTAGTgttta
gi|11 : aaTGTATC-TGCTTATAAAACAC------------ATATA-TTTCATTCAA-AATTTCGAT-T----CATATA--T---A-----TT--A-TT---TAAC---CTATAC---CTTGAG-CG-TTTGTTATCACTAAACAAATTATATATTTATTGAACCACTCTGA-AGTTA------ATTCCATT--TCCA--TA----GCAACG-GCCTTAAG-AACAT-TTTTAAATCAAACCCA-----TGTA---TAGTTTCTTTTa
gi|12 : tT---AAAC---CTAAAC---TATGAA-GG-TTTGTTATCACAAAACAAACTATGTATTCATTAAACCAGTC-GACAGTTT------ATCTCATTTCTT----TA----GTAACG-GCCTTGTG-AAAATA-TTCAAATGAAAACCA-----TGTA---TAGTTa
gi|13 : gttctagtatgcatgtacaatgaaaCTAAAA-A-ACAAAACTATACAGTTACGTTGTATC-TGCTTATGAAACACC----------CATATG-TTTT-TTTAATTGTTTCGAA-T----CATAT-------------TC--AGTC---AAAC---CTGT--------GAA------------CAC-------ATTGCGTATTTACTGAACagtatatatcaatctatttattttgtaacatttgtgtaa
gi|13 : tttatca----G-AACGTGC---ATG-AAAATATTTCAAATCAAAACCA-----TGTA---TAGTTTC-TTTTTAGAGTTAGTATAgtgcatgaaaatatttcaaatcaaaaccatgtatagtttctttttagagttagtataatat
gi|14 : tttatcactaaaaaacaaaactatacagttacgttgtatctgcttatgaaacacccatatgtttttttaattgtttcgaatcatattcagtcaaacctgtgaacacattgcgtatttact-A-AAGAAACTATACA----TGCTGTATC-TGCCTATAAAGCTTG----------CATCTG-TTTTATTCAA-C-TTATGAT-------A-ATA--T---T-----TTAAA-TC---AAAA---CCATAatat
gi|14 : gCTTATG-ATAATATTTTAAATCAAAACCA-----TATA---TAGTTTCTTTTTtatagtttctttttataatttgtttactataaaattaacacctcgcagtaaatataatcc
gi|15 : gaaagaaactatacatgctgtatctgcctataaagcttgcatctgttttattcaaATATACTTTTATCCAA-TGTTTCAAT-T----CATATG--C---A-----TC--A-AT---AAAC---ATATAA---TATGAA-GG-CTTGTTATCATTTAACAAGTTTTGAATTTATTAAACTGCTC-AACAGTTT------ATTCCATTT---TA--TT----GTAACA-TCCTTATG-AACATA--TCAAAataatttgtttactataaaattaacacctcgcagtaaatataatcc
gi|16 : GAA-GG-TTTGTTATCACTAAACAACTGACGTATTTATCGAACCATTT-GAAATTAA------ATCACATTT---TA--TAGTTTG-CACATGC---GTG-TAAATATTTCAAATAAAAACCATTAATTTTA---TAGTTCCTTTTTTCAAGTa
gi|17 : -TTTGTTGTCACTAAACAAATTGTGTATTTATTGATCAACTC-TACAGTTA------ATCTCATATCT-----------G-CACGTGC---ATG-CACATGTTTAAAATCAAAACCG-----TGCA---TAGTTTATTTTTTTGa
gi|18 : a-A-AAAAAAGTATAGA----CGCTGTATC-TGCTTATAAAACGTC----------CA-------TTATTCAA-TGTTTCGAT-T----CAAATA--T---A-----TA--A-GT---ACACATATTATCC---TACGAA-GG-TTTTTTTTCA
gi|19 : tgctaact-AACG-AC-TTATG-AAAACATTTCAAATCAAAACGA-----TATA---TAGTTTCATTTTTTGAGGTTTTATATgc
gi|2 : tttcatCTCAAG-A-TATATATTATACA----TGATGAATC-TGCTTATAAAGTACCTATTATAAAATATATA-TGTTATTCAA-TGTTTCGAC-T----CATATA--T---ATTTATTT--G-TT---AAAC---CTATACTAGTACAAA-GGTTTTGTTATCACCAAACAAAGTGTGTATTTATTGAACCATTC-TACAGTTT------ACTCCATT--TCTA--TA----GAAACG-ACTTTATG-AAAATATTTCAAATCGAAACCA-----TGTA---TAATTttaatgatataagtact
gi|20 : atatgtgacttattcaaatatatcattaatcgaaaatattggttcatatattttaaAAACTACACA----TGATGTATCTTGTTTA-AAAACACG----------CACGTATTTTTTTTCAA-TATTTCTAT-T----Cgttta
gi|21 : ACG----TGATGCATC-TGCTTATAAAACACC----------CATATA-GTTTACTCAA-TGGTTCAAT-T----
gi|3 : -----TGTA---TAGTTTCTTTTTTTGAGTTTGTATATt
gi|3 : tataagttagtttaatatatgacttgacctcaagttggacCTCAAA-AAAAGAAACTATACA----CCGTGTATC-TGCTTATAAAACACC----------AAGATA-GTTAATTTAA-TGTTTCGAA-TCAAACATGTAACT---A-----TA--A-TT---AAAC---ATATAC---TATGCA-GA-TGCGTTGTCAATAAGCGAATTGTATATTTATTTAGCCATTT-TCAAGTTA------ATTCCA--TGTCTA--TA----G---------TT-TG---------------CACGAGCA-----TGTA---TGGTTTCTGTTTT--AGTTCGTGTGTccgtgtatctgcttataaaacaccaagatagttaatttaatgtttcgaatcaaacatgtaactataattaaacatatactatgcagatgcgttgtcaataagcgaattgtatatttatttagccattttcaagttaattccatgtctatagtttgcacgagcatgtatggtttctgttttagttcgtgtgtataa
gi|4 : tataagttagtttaatatatgacttgacctcaagttggacatatacaaaCTCAAT-G-CATAAACTGTACA----TGGTGTATC-TTCTTATATAACACC----------CATATA-TTTTATACAA-TGTTTTGAT-T----CATATA--T---A-----TT--A-TT---AAAG---CTATAA---GTCGAA-GG-TTTGTTATCGCTAAAC-AATTTTATATTTTTTAAATCACTC-TACAG-TA------ATCCCATTTCTATATTTT----G-CATATGC---ATGAAAAATATTTCATATCAAAACCA-----TGCA---TAGTTCCataa
gi|5 : atatgttggtctgaaaacatatttatttatatcatagttgatctatactgaCTCAAA-C-AAAAAACTATAAA----CGTTGTATC-TGCTTGTAAAACACC----------CATATA-TTTTATTCAA-TGTTTCGATAG----CATATA--TTATA-----TC--A-TCGTAAAAC---CTAAAC---TACGAA-GG-TTTGTTATCACTAAACAAACTGTGAATTTATTGAACCTCTC-GACAGTTA------ATCCAATTTCTCTA--TA----G-AACA-GCCTGATG-AAAATATTTCAAATCAAAACCA-----TAAA---TAGTTTCTTTTTTTGAGTAAGTATAT
gi|6 : actacAAA-A-AAGAAACTATACA----TGATGCATC-TGCTTATACTATACT----------CATAT-----CATTCAA-TGTTTTGAT-T----AATATA--T---G-----TT--A-TT---TAAC---TTATAC---TAAACA-GT-TTTGTTATCAATAAACAAATTGTGGATTTATCAAACCACTC-GACATTTAGATCTTATCCCATTTCTTT---TG----T-AACA-GCTTTATG-AAAATATTTCAAATC-AAACCAT----TATA---TATATTC-TTTCTTGAGTTAG
gi|7 : AA-A-AAGAAACTATACA----TGATGCATC-TGCTTATACTATACT----------CATAT-----CATTCAA-TGTTTTGAT-T----AATATA--T---G-----TT--A-TT---TAAC---TTATAC---TAAACA-GT-TTTGTTATCAATAAACAAATTGTGGATTTATCAAACCACTC-GACATTTAGATCTTATCCCATTTCTTT---TG----T-AACA-GCTTTATG-AAAATATTTCAAATC-AAACCAT----TATA---TATATTC-TTTCTTGAGTT
gi|8 : CTCAAA-A-AAGAAACTAGACA----TGGTGTATC-TGGTTATAAAACATG----------CATATA-TTTTATTCAA-TGTTTCGAT-T----CATATA--T----------C--A-TT---AAAC---CTATAT---TAGGAAAGG-TTT---ATCAC-----AAA----------ATTGAACCACTC-GACAGTTA------ATCCCATTTCTAT---TA----T-AACG-GCTTTATG-AAAATATTTCAAATCAAAAACA-----TGTA---TAGTTTC-TTTCTTGAGTTAGTATAT
gi|9 : caaTTAAACA-AAGAAACTGTACA----TAATGTATC-TGCTAATGAAACACT----------CATATA-TTTTATTCAA-TGTTTCCAT-T----CATATA--T---A-----TT--A-TC---AAAC---ATACAC---CACTTA-GG-TTTGTTCTCACTAAACACACTGTG--TTTATTGTACCACTC-GATAGTTA------CTGCCATT--TCTA--TA----G----------TATG--AAATATTTCAAATTAAAACCA-----TGTA---TAGTT--TTTATTTGAGTCAGatatat
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): TATATGTAATACTCGTGATATGTTGTTGGAAATGCTCTATTTCTAATTATAT