lowQualScore : 1111111111111111111111111111111111111111111
lowQualScore : 222222 888888888888888888888 1 33333 11 111 222 1 22 1 1111111111111111111111111111111111111111111 1 1 4 1 1 11 777777777777777777 1 1 66666 1 2 2222222 11 222222 111111111 1 1 22222 11 2222 2222 1 1 1 4
lowQualScore : 6 2 333333 444444444444444444444 1 6 4 99999 44 3 0 55 0 2 2 7 666 6 0 6 333 8 2 777 2 1 2 88 44 8 3 0 4 22 0 6 7 1 4 11 6666666666666666666666666666666666666666666 7 5 0 6 6 6 6 6 5 1 5 77 7 0 1 99 55 2 2 4 3 222222222222222222 3 0 7 0 7 6 6 7 99999 5 2 3 2 6666666 7 11 111111 0 444444444 6 0 55555 7 11 8888 4444 55 5 5 6 7 0 6
lowQualScore : . . ...... ..................... . . . ..... .. . . .. . . . . ... . . . ... . . ... . . . .. .. . . . . .. . . . . . .. ........................................... . . . . . . . . . . . .. . . . .. .. . . . . .................. . . . . . . . . ..... . . . . ....... . .. ...... . ......... . . ..... . .. .... .... .. . . . . . .
lowQualScore : 0 8 000000 666666666666666666666 4 0 0 22222 55 2 2 55 2 0 5 0 888 0 7 0 000 2 5 222 2 2 0 00 55 2 2 0 7 33 7 0 0 0 7 77 8888888888888888888888888888888888888888888 0 0 0 0 0 0 0 0 0 2 0 00 0 7 5 55 55 5 5 0 0 777777777777777777 2 0 3 7 3 0 0 0 00000 0 5 0 5 0000000 8 88 555555 8 666666666 0 0 00000 8 88 3333 0000 55 0 0 0 0 0 0
consensus : CCATCGAGGGCTAACAGATGATCAGTTA------ACCT-AACCA---TTNTTTCCTGGGATCCTGGAAGGTTAACCAGTACTCGAGCACACCC-AT-CTCCGCAAGTAACCGATAACTTTCCCACTTGAATCAGTGGTGAGANACGAATGATAN--TGAGACACAATGTCGTATATCAATCATCA-GGAGACTGTGGNCNGGCGGGGATTCAAACTCACAACCTCTGGATTGATAGTC-AGACACCGTACCGACTGAGCTAACCNGGCCCGG-CATAAATTGCTGAAGGCACATTGTGGCTTAAGTA-AGATAACAAAAATCACTA-AAGTANNNNNNNNNNNNNNGGTCGAGTGGTTTAAAGTGTCGTCTAAAGATCACTTGCCTCTCACCGCTGAGGTCGTNGGTTCNAGNNCCNCTCGCTNCAAANACTNCAAGTGAGAAA----ATTTACCAGTTAC-TTGCGGAAGGACGGTGGTCCTACTCAGATT--CATTNTGGGGTCTTCNTCCACCAGT---A---ANACTGGATATGCCATAT----ATAACCTGA-TCAGTCTG-GGTCTTCCTCCACCAG-TA-----ANACTGGATATGCCATAT----ATAACCTNAAATGTNNTGGAAATTGCCTTAAATCTCAATCAA-ATAAAT
Reference ( gi|1 ) : CCATCGAGAGCTAACAGACGATCAGTTA------ACCT-AGCCAATGTTTTTTTCTGGGATCCTGGAAGGTTAACCAATACTCGAGAACACCCTAA-CTTTGCAAGTAACTGATAACTTTTACACTTGAATCAGCGGTGAGAGACGAATGATAA--TGAGACGCAATGTCGTATATCAACCATCATGGAGATTGTGGCCGAACGGGAATTCGAACTCATGACCCCTGGGTTGATAGTC-AGACACTGTAACGACCGAGCTTATCAGGCCCAG-CATA---TGTTATA-GTATATTGCAGCTTATTTACATATCGTAATAATCAGTATAAGTAAAACGGTCAGCCGTGGCCGAGTGGTCTAAGGCGCCGTCTCAAGATCACTTACTTCTCACTGCCAATGTCGTAGGTTCGTGTCCCGCTCGCTCCAAAAACTTTATGTGAGAAA----GTTTGCCAGTTAC-TTGCGGAAGGACGGTGGTTCCACACAGTCTCGCAGTCTGAAGTCTTCCTCCACCAGT---A---ATACTGGATATGCCATAT----ATAACCTGACTCAGTCTGAGGTCTTCCTCCACCAG-TA-----ATACTGGATATGCCATAT----ATAACCTGAAATGTGTTGAAAATGGCGTTAAACCTCATTCAATATAAGTAAAATTGTTCAACAGAAATGATATATGACATTATCAGTGTTCCCTATCATCAAATAATTGTAAAAAA
gi|2 : CCATCAAGGGCTAACAGATGATCAGTTA------ATAT-AACCA---TTGTTTCCTGGGATCCTGAAAGGTTAACCAGTACTCAAGCACACCCCAT-CTCCGCAAGTAACTGATAACTTTCTCTATTGAATCAGTGGTGAGAGACGAATGATAC--TGAGACACAATGTCATATATAAATCATCACGGAGACTGTTGCCGGGCGGGGATTCAAACTCACAACCTCTGGATTGATAG---ACACACTGC--CAGCTGAGCTAATCGGGCCTGG-C------TACTAAAGGCAT-TTG-AGTTTAAGTA-AGATAACAAAAATCACTA-AAGTA
gi|4 : tgtatctggctgtggtttccaaaaatatttaagtctgttatttttctcaaaattcaatagtatgctcaatttcatactaaacttgattgattgattgattaattgaatatttagcatcatttttatgCTATCAAGGGCTAACAGATGATCAGTTA------ACTT-AACCA---CTCTTTCCTGGAATCCTAAAAGGTTAAACAGTACTCAAGCACACC--AATCTCCGCAAGTAACTGATAAATTTTGCACTGGAATCAGTTGCGAGAGATGAATGA-AA--TGAGACACAATGTTGTTTATCAATTCTCAGAGAGACTGTGGGCTGGCGGTGACTCAAATTCACGACCCCTGGATTGATAGTC-AGATACCATACCGACTGAACTAACCTGGTCCAG-Ctttttgtgacatcgggccagatgt
gi|3 : gcatcaattttgcaCCATTGAGGGCTAACAAATGATCAGTTACATGTAACCTTAACCACTATTT-----------CCTCGGAGGTTAACAAGTATTCGAGTTCACCC-AT-CTCTATATATAACCAA-AATTTCCCCACTTGAATCAGTGATGAGACATTAATGACAA--TGAAACACAATGCCATATAACAATCATC----------TGGCCAAACATGGATTCAAACTCACAACCTCGGGATTAGTAGTC-AGATGCAGTACCAACTGAGCTAACTAGACCTGGTCATAAATTGCTG-A-ATACATTATGGCTtacccatgaatagtgatttcaagggtaggttgaataataaaa
gi|5 : tccagtgtatgttaaatttggtagtttttcgtaaattgttgattgtttgtatgaatatttggcgtcattcttatgCCATCGAGGGCTATCAGATGATCA----------ACCT-AACCA---TTATTTTCCGTGATCTCGGAAAGATAAGCAGTTATCGAGTACACCC-AT-CTTCGCAAGCAACTGATAACTTTCCCATTTGAATCTGCGGTCAGATACGAGTGGTACTTTGAAACACTATgaatgactaaaccatatatataaatgcttataaaaatgttcaaaacagatcaacaacgtcgttcaaggac
gi|7 : cacttttatgttatattttggattacataatataatgtttagcgtcattctataCCATCGAAGGCTAACAGACGATGGGTTA------ACCT-----------------T---ATCCTGTAAGGTTAACCAGTACTCGAAGACACCc
gi|14 : cactgatttgatgaatatnnnnnnnnnnnnnnnnnnnnnnnnnatatttagcgtcatgtttatgGACTGTGGGCTAGAGGGAAATGGAATTCACAATTT-TGACTTGATAGTCAAGACACaaa
gi|22 : GGTCGAGTGGTTTAAAGTGTCGTCTAAAGATGACTTACTTaataccatctgaacaaactggt
gi|8 : AAGTTCACTTACATCTCACTGCTGAGGTTGTTGGTTCCAGGACCTCTTATTGCAAATATTGCAAGTGAGTAACACTATTT-CTAG-TACATTGCAGAAGAACAGTG
gi|23 : gtgatgtcaaAAGGTCACTTGCCTCTCACTGCTGAGGTTG
gi|6 : gtggtcaAGACCACTTGCCTCTCACCGCTAATGTCGTGGGTTCGAGTCCCGCTCGCTCCAAAAACTTTA------------------CCAGTTGC-TTGCGGAAGGACAGTGGTCCTACTCAGATT--CATTATGAGGTCTTTCTCCAAAAAT---A---AAACTGGATATGCCATATACAAATAACCTGA
gi|2 : GAGAAA----GTT-ATCAGTTAC-TTGCGGA--GATGG-GGTaatatggtgaaaat
gi|4 : tgtatctggctgtggtttccaaaaatatttaagtctgttatttttctcaaaattcaatagtatgctcaatttcatactaaacttgattgattgattgattaattgaatatttagcatcatttttatgccatcaagggctaacagatgatcagttaatataaccattgtttcctgggatcctgaaaggttaaccagtactcaagcacAAA----ATTTATCAGTTAC-TTGCGGAtattgaatcagtggtgagagacgaatgatactgagacacaatgtcatatataaatcatcacggagactgttgccgggcggggattcaaactcacaacctctggattgatagacacactgccagctgagctaatcgggcctggctactaaaggcatttgagtttaagtaagataacaaaaatcactaaagtatttttgtgacatcgggccagatgt
gi|9 : gcatcaattttgcactatcaagggctaacagatgatcagttaacttaaccactctttcctggaatcctaaaaggttaaacagtactcaagcacaccaatcTCTGG-GTCTTCACCCACCAGTTACATGTACACTG--TATACAATAT----ATAACC-------G-CTG-GGTCTTCACCCACCAGTTACACGTACACTG--TATACAATAT----ATAACgcactggaatcagttgcgagagatgaatgaaatgagacacaatgttgtttatcaattctcagagagactgtgggctggcggtgactcaaattcacgacccctggattgatagtcagataccataccgactgaactaacctggtccagctacccatgaatagtgatttcaagggtaggttgaataataaaa
gi|13 : TTCACCAAT---A---ATACTAG--ATGCCAAAT----ACAA
gi|20 : CCAGT---A---AAACTGGATATGCCAT-----------CTGAATCAGTCTGTGGTATTCCTCCgttttgttttggaaattgccttaaatctcaatcaaataaattcaatagt
gi|6 : GATTCATTATGAGGTCTTTCTCCAAAAA-TA-----AAACTGGATATGCCATATACAAATAACCTGAAATATGGTGAAAAT
gi|13 : agaccacttgcctctcaccgctaatgtcgtgggttcgagtcccgctcgctccaaaaactttaccagttgcttgcggaaggacagtggtcctactcaTTCACCAA-TA-----ATACTAG--ATGCCAAAT----ACAAGTTT---TGTTTTGGAAATTGCCTTAAATCTCAATCAA-ATAAA
gi|20 : CCAG-TA-----AAACTGGATATGCCATtcaatagt
10 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): CTTTTATCCAAGTCATGAAATGGTAGCCATATTTAGTGGATTTGTTAAAAAATTATGGGCTGGACATTTTATAGCAAAGTTTCAAATAAA
Unaligned ( gi|11 ): GGTTCAAACTCACAACCACTGAATGGACAGATGGGTTACTGACCGAGCTATCTGGGTACTGAGATCACTTGAGCAGTCAGGT
Unaligned ( gi|12 ): ATCAGGCAGTAATATGGTGGTTATTGGCCCTTATTTATATTGTGCGATCGCAACGGAAGAGGGACTTTATAACCCCAGTTT
Unaligned ( gi|15 ): GGCTCATTCAGGAAGGCTTTAAGCCTGATTTATCTTTGTTTCACAATCATTGTAAAATAATTAAGTAAAAA
Unaligned ( gi|16 ): ACAATGATCAGAATATATATCACAAAGACAGTGGCTGGATCGGAATTTAATCTCACAAACCCTGGATT
Unaligned ( gi|17 ): GAAACTGTGGCAAGACTGCGATACAAATTCAAGACCCCAGGATTGATATGATCAGATA
Unaligned ( gi|18 ): TACATGTAAATACACTTTCATCATACATGTAAATTGTAGTTAACAACACAGTTCAA
Unaligned ( gi|19 ): ATTAATTATAAATTGAATATTAAGCATCATGTTTATGCCATTACAAAGCTAA
Unaligned ( gi|21 ): TTAATGTTAAGTGTCATTTTATGCCATTAAGGGCTTTCAGACAAC
Unaligned ( gi|24 ): AGGACAGAGGTCCTACTCAGATTCATTCTGA
Alignments
lowQualScore : 111111 111 1 111 111 22222 1 333333 1111 11 2 2 11111111111111 55555555555555555 1 1 11 2222222 222222 111 2 1 33333 2222 2
lowQualScore : 999999 6 111 3 2 3 3 6 2 0 3 1 3 222 8 444 5 0 44444 1 1 1 77 1 5 0 7 1 0 444444 4444 0 88 33 2 0 2 3 4 2 0 44444444444444 1 11 9 1 2 2 1 1 22 1 1 1 55555555555555555 2 7 3 2 88 1 0 1 6666666 1 2 111111 3 777 7 6 3 33333 1 6 7 2222 22 3 2 4 0
lowQualScore : ...... . ... . . . . . . . . . . ... . ... . . ..... . . . .. . . . . . . ...... .... . .. .. . . . . . . . .............. . .. . . . . . . .. . . . ................. . . . . .. . . . ....... . . ...... . ... . . . ..... . . . .... .. . . . .
lowQualScore : 222222 7 777 3 5 7 7 0 8 8 2 0 8 000 0 000 0 8 22222 0 0 8 99 7 7 1 8 0 0 777777 7777 7 00 00 5 0 5 0 0 5 0 00000000000000 0 55 8 4 0 5 0 0 00 0 0 0 33333333333333333 3 3 3 0 33 0 7 0 0000000 0 5 555555 2 000 3 7 3 33333 0 7 3 5555 00 0 5 0 0
consensus : CCATCGAGGGCTAACAGACGATCAGTTA------ACCT-AACCA---TTNTTTCCTGGGATCCTGGAAGGTTAACCAGTACTCGAGNACACCC-ATCTCCGCAAGTAACTGATAACTTTCNCACTTGAATCAGCGGTGAGAGACGAATGATA--ATGAGACACAATG-TCG---TATATCAATCATCA-G-GAGACTGTGGCCGGGCGGGGATTCAAACTCACGACCCCTGGATTGATA--GTC-AGACACCGTACCGACCGAGCTAACCGGGCCCGG-CATA---TGCTGAAGGTATATTGCGGCTTAANTACANATCGCAANAATCANTATAAGTANNNCGGTNANNCGNGGCCGAGTGGTCTAAGGCGTCGTCTAAAGATCACTTACCTCTCACTGCTGANGTCGTNGGTTCGAGTCCCGCTCGCTCCAAAAACT-CA-GTGAG-AA----GTTTGCCAGTTAC-TTGCGGAAGGACAGTGGTCCTACTCAGATT--CATTCTGAGGTCTTCCTCCACCAGT---A---ANACTGGATATGCCATAT----ATAACCTG-A-TCAGTCTG-GGTCTTCCTCCACCAG-TA-----ATACTGGATATGCCATATATAACCTNAAATGTNTTGGAAATNGCNTTAAACCTCANTCAATATAAGT
Reference ( family-5486 ) : CCATCGAGGGCTAACAGATGATCAGTTA------ACCT-AACCA---TTNTTTCCTGGGATCCTGGAAGGTTAACCAGTACTCGAGCACACCC-ATCTCCGCAAGTAACCGATAACTTTCCCACTTGAATCAGTGGTGAGANACGAATGATA--NTGAGACACAATG-TCG---TATATCAATCATCA-G-GAGACTGTGGNCNGGCGGGGATTCAAACTCACAACCTCTGGATTGATA--GTC-AGACACCGTACCGACTGAGCTAACCNGGCCCGG-CATAAATTGCTGAAGGCACATTGTGGCTTAAGTA-AGATAACAAAAATCACTA-AAGTANNNNNNNNNNNNNNGGTCGAGTGGTTTAAAGTGTCGTCTAAAGATCACTTGCCTCTCACCGCTGAGGTCGTNGGTTCNAGNNCCNCTCGCTNCAAANACTNCAAGTGAGAAA----ATTTACCAGTTAC-TTGCGGAAGGACGGTGGTCCTACTCAGATT--CATTNTGGGGTCTTCNTCCACCAGT---A---ANACTGGATATGCCATAT----ATAACCTG-A-TCAGTCTG-GGTCTTCCTCCACCAG-TA-----ANACTGGATATGCCATATATAACCTNAAATGTNNTGGAAATTGCCTTAAATCTCAATCAA-ATAAAT
gi|1 : CCATCGAGAGCTAACAGACGATCAGTTA------ACCT-AGCCAATGTTTTTTTCTGGGATCCTGGAAGGTTAACCAATACTCGAGAACACCCTAACTTTGCAAGTAACTGATAACTTTTACACTTGAATCAGCGGTGAGAGACGAATGATA--ATGAGACGCAATG-TCG---TATATCAACCATCATG-GAGATTGTGGCCGAACGGGAATTCGAACTCATGACCCCTGGGTTGATA--GTC-AGACACTGTAACGACCGAGCTTATCAGGCCCAG-CATA---TGTT-ATAGTATATTGCAGCTTATTTACATATCGTAATAATCAGTATAAGTAAAACGGTCAGCCGTGGCCGAGTGGTCTAAGGCGCCGTCTCAAGATCACTTACTTCTCACTGCCAATGTCGTAGGTTCGTGTCCCGCTCGCTCCAAAAACTTTATGTGAGAAA----GTTTGCCAGTTAC-TTGCGGAAGGACGGTGGTTCCACACAGTCTCGCAGTCTGAAGTCTTCCTCCACCAGT---A---ATACTGGATATGCCATAT----ATAACCTG-ACTCAGTCTGAGGTCTTCCTCCACCAG-TA-----ATACTGGATATGCCATATATAACCTGAAATGTGTTGAAAATGGCGTTAAACCTCATTCAATATAAGT
gi|11 : GGTTCAAACTCACAACCACTGAATGGACA--GAT-GGGT----TACTGACCGAGCTATCTGGGaaaattgttcaacagaaatgatatatgacattatcagtgttccctatcatcaaataattgtaaaaaa
gi|13 : TTCACCAA-TA-----ATACTAGAT--GCCAAATACAAGTTT---TGTTTTGGAAATTGCCTTAAATCTCAATCAA-ATAAATtactgagatcacttgagcagtcaggt
gi|14 : GACTGTGGGCTAGAGGGAAATGGAATTCACAA-TTTTGACTTGATA--GTCAAGACACAATACCATCTGAACAAACTGGtcaatagt
gi|16 : ACAATGATCAGAATATAT--ATCA-CA-A--AGACAGTGGCTGGATCGGAATTTAATCTCACAAACCCTGGATTt
gi|17 : -GAAACTGTGGCAAGACTGCGATACAAATTCAAGACCCCAGGATTGATATGATC-AGATA
gi|2 : CCATCAAGGGCTAACAGATGATCAGTTA------ATAT-AACCA---TTGTTTCCTGGGATCCTGAAAGGTTAACCAGTACTCAAGCACACCCCATCTCCGCAAGTAACTGATAACTTTCTCTATTGAATCAGTGGTGAGAGACGAATGATA--CTGAGACACAATG-TCA---TATATAAATCATCACG-GAGACTGTTGCCGGGCGGGGATTCAAACTCACAACCTCTGGATTGATA--G---ACACACTG--CCAGCTGAGCTAATCGGGCCTGG-C------TACTAAAGGCAT-TTG-AGTTTAAGTA-AGATAACAAAAATCACTA-AAGTATTTTTGTGACATCGGGCCAGATG
gi|20 : tgtatctggctgtggtttccaaaaatatttaagtctgttatttttctcaaaattcaatagtatgctcaatttcatactaaacttgattgattgattgattaattgaatatttagcatcatttttatgCCAGT---A---AAACTGGATATGCCAT-----------CTGAA-TCAGTCTGTGGTATTCCTCCt
gi|22 : GGTCGAGTGGTTTAAAGTGTCGTCTAAAGATGACTTACTT
gi|23 : GTGGTC-AAAGGTCACTTGCCTCTCACTGCTGAGGTTG
gi|24 : AGGACAGAGGTCCTACTCAGATT--CATTCTG
gi|3 : CCATTGAGGGCTAACAAATGATCAGTTACATGTAACCTTAACCA---CTATTTCCTCGGA--------GGTTAACAAGTATTCGAGTTCACCC-ATCTCTATATATAACCAA-AATTTCCCCACTTGAATCAGTGATGAGACATTAATGACA--ATGAAACACAATG-CCA---TATAACAATCATC-----------TGGCCAAACATGGATTCAAACTCACAACCTCGGGATTAGTA--GTC-AGATGCAGTACCAACTGAGCTAACTAGACCTGGTCATAAATTGCTGAA--TACATTATGGCTGAAa
gi|4 : tccagtgtatgttaaatttggtagtttttcgtaaattgttgattgtttgtatgaatatttggcgtcattcttatgCTATCAAGGGCTAACAGATGATCAGTTA------ACTT-AACCA---CTCTTTCCTGGAATCCTAAAAGGTTAAACAGTACTCAAGCACACCA-ATCTCCGCAAGTAACTGATAAATTTTGCACTGGAATCAGTTGCGAGAGATGAATGA-A--ATGAGACACAATG-TTG---TTTATCAATTCTCA-GAGAGACTGTGGGCTGGCGGTGACTCAAATTCACGACCCCTGGATTGATA--GTC-AGATACCATACCGACTGAACTAACCTGGTCCAG-Ctgactaaaccatatatataaatgcttataaaaatgttcaaaacagatcaacaacgtcgttcaaggac
gi|5 : gcatcaattttgcaCCATCGAGGGCTATCAGATGATCA----------ACCT-AACCA---TTATTTTCCGTGATCTCGGAAAGATAAGCAGTTATCGAGTACACCC-ATCTTCGCAAGCAACTGATAACTTTCCCATTTGAATCTGCGGTCAGATACGAGTGGTACTTTGAAACACTATtacccatgaatagtgatttcaagggtaggttgaataataaaa
gi|6 : cacttttatgttatattttggattacataatataatgtttagcgtcattctataAGACCACTTGCCTCTCACCGCTAATGTCGTGGGTTCGAGTCCCGCTCGCTCCAAAAACT------------------TTACCAGTTGC-TTGCGGAAGGACAGTGGTCCTACTCAGATT--CATTATGAGGTCTTTCTCCAAAAAT---A---AAACTGGATATGCCATATACAAATAACCTG-A-c
gi|7 : CCATCGAAGGCTAACAGACGATGGGTTA------ACCT-----------------T---ATCCTGTAAGGTTAACCAGTACTCGAAGACACCaatatggtgaaaat
gi|8 : cactgatttgatgaatatnnnnnnnnnnnnnnnnnnnnnnnnnatatttagcgtcatgtttatgGTGATGTCAAAAGTTCACTTACATCTCACTGCTGAGGTTGTTGGTTCCAGGACCTCTTATTGCAAATATTGCAAGTGAGTAACACTATTT-CTAG-TACATTGCAGAAGAACAGTGaaa
gi|9 : GGGTCTTCACCCACCAGTTACATGTACACTG--TATACAATAT----ATAACC--------G-CTG-GGTCTTCACCCACCAGTTACACGTACACTG--TATACAATATATAAC
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): CTTTTATCCAAGTCATGAAATGGTAGCCATATTTAGTGGATTTGTTAAAAAATTATGGGCTGGACATTTTATAGCAAAGTTTCAAATAAA
Unaligned ( gi|12 ): ATCAGGCAGTAATATGGTGGTTATTGGCCCTTATTTATATTGTGCGATCGCAACGGAAGAGGGACTTTATAACCCCAGTTT
Unaligned ( gi|15 ): GGCTCATTCAGGAAGGCTTTAAGCCTGATTTATCTTTGTTTCACAATCATTGTAAAATAATTAAGTAAAAA
Unaligned ( gi|18 ): TACATGTAAATACACTTTCATCATACATGTAAATTGTAGTTAACAACACAGTTCAA
Unaligned ( gi|19 ): ATTAATTATAAATTGAATATTAAGCATCATGTTTATGCCATTACAAAGCTAA
Unaligned ( gi|21 ): TTAATGTTAAGTGTCATTTTATGCCATTAAGGGCTTTCAGACAAC
Alignments
lowQualScore : 11111111111111111111
lowQualScore : 111111 111 1 111 111 22222 1 222222 1111 11 1 00000000000000000000 1 1 11 2222222 222222 111 2 1 33333 2222 1
lowQualScore : 0 999999 6 111 3 2 3 1 6 0 1 3 111 8 444 5 0 44444 1 77 1 5 0 7 0 0 888888 4444 7 22 1 6 1 2 1 1 5 33333 1 22 33 9 1 1 1 55555555555555555555 2 7 3 88 3 6666666 1 2 111111 3 777 7 6 3 33333 6 7 2222 1 1 1 1 5
lowQualScore : . ...... . ... . . . . . . . . ... . ... . . ..... . .. . . . . . . ...... .... . .. . . . . . . . ..... . .. .. . . . . .................... . . . .. . ....... . . ...... . ... . . . ..... . . .... . . . . .
lowQualScore : 7 222222 7 777 3 5 7 0 0 8 0 8 666 0 000 0 8 22222 7 99 7 7 1 8 7 0 777777 7777 3 77 0 7 0 5 0 0 5 55555 0 00 55 8 4 0 0 00000000000000000000 0 3 3 33 2 0000000 0 5 555555 2 000 3 7 3 33333 7 3 5555 0 0 0 0 5
consensus : CCATCGAGGGCTAACAGACGATCAGTTA------ACCT-AACCA---TTNTTTCCTGGGATCCTGGAAGGTTAACCAGTACTCGAGNACACCC-ATCTCCGCAAGTAACTGATAACTTTCNCACTTGAATCAGCGGTGAGAGACGAATGATAA--TGAGACACAATG-TCG---TATATCAATCATCA-G-GAGACTGTGGCCGGGCGGGGATTCAAACTCACGACCCCTGGATTGATA--GTC-AGACACCGTACCGACCGAGCTAACCGGGCCCGG-CATA---TGCTGAAGGTATATTGCGGCTTAATTACANATCGCAANAATCANTATAAGTANNNCGGTNANNCGNGGCCGAGTGGTCTAAGGCGTCGTCTAAAGATCACTTACCTCTCACTGCTGANGTCGTNGGTTCGAGTCCCGCTCGCTCCAAAAAC-T-C-A-GTGAG-AA----GTTTGCCAGTTAC-TTGCGGAAGGACAGTGGTCCTACTCAGATT--CATTCTGAGGTCTTCCTCCACCAGT---A---ANACTGGATATGCCATAT----ATAACCTG-A-TCAGTCTG-GGTCTTCCTCCACCAG-TA-----ATACTGGATATGCCATATATAACCTNAAATGTNTTGGAAATNGCNTTAAACCTCANTCAATATAAGT
Reference ( family-5486 ) : CCATCGAGGGCTAACAGACGATCAGTTA------ACCT-AACCA---TTNTTTCCTGGGATCCTGGAAGGTTAACCAGTACTCGAGNACACCC-ATCTCCGCAAGTAACTGATAACTTTCNCACTTGAATCAGCGGTGAGAGACGAATGATAA--TGAGACACAATG-TCG---TATATCAATCATCA-G-GAGACTGTGGCCGGGCGGGGATTCAAACTCACGACCCCTGGATTGATA--GTC-AGACACCGTACCGACCGAGCTAACCGGGCCCGG-CATA---TGCTGAAGGTATATTGCGGCTTAANTACANATCGCAANAATCANTATAAGTANNNCGGTNANNCGNGGCCGAGTGGTCTAAGGCGTCGTCTAAAGATCACTTACCTCTCACTGCTGANGTCGTNGGTTCGAGTCCCGCTCGCTCCAAAAAC-T-C-A-GTGAG-AA----GTTTGCCAGTTAC-TTGCGGAAGGACAGTGGTCCTACTCAGATT--CATTCTGAGGTCTTCCTCCACCAGT---A---ANACTGGATATGCCATAT----ATAACCTG-A-TCAGTCTG-GGTCTTCCTCCACCAG-TA-----ATACTGGATATGCCATATATAACCTNAAATGTNTTGGAAATNGCNTTAAACCTCANTCAATATAAGT
gi|1 : CCATCGAGAGCTAACAGACGATCAGTTA------ACCT-AGCCAATGTTTTTTTCTGGGATCCTGGAAGGTTAACCAATACTCGAGAACACCCTAACTTTGCAAGTAACTGATAACTTTTACACTTGAATCAGCGGTGAGAGACGAATGATAA--TGAGACGCAATG-TCG---TATATCAACCATCATG-GAGATTGTGGCCGAACGGGAATTCGAACTCATGACCCCTGGGTTGATA--GTC-AGACACTGTAACGACCGAGCTTATCAGGCCCAG-CATA---TGTT-ATAGTATATTGCAGCTTATTTACATATCGTAATAATCAGTATAAGTAAAACGGTCAGCCGTGGCCGAGTGGTCTAAGGCGCCGTCTCAAGATCACTTACTTCTCACTGCCAATGTCGTAGGTTCGTGTCCCGCTCGCTCCAAAAACTT-T-ATGTGAGAAA----GTTTGCCAGTTAC-TTGCGGAAGGACGGTGGTTCCACACAGTCTCGCAGTCTGAAGTCTTCCTCCACCAGT---A---ATACTGGATATGCCATAT----ATAACCTG-ACTCAGTCTGAGGTCTTCCTCCACCAG-TA-----ATACTGGATATGCCATATATAACCTGAAATGTGTTGAAAATGGCGTTAAACCTCATTCAATATAAGT
gi|11 : GGTTCAAACTCACAACCACTGAATGGACA--GAT-GGGT----TACTGACCGAGCTATCTGGGaaaattgttcaacagaaatgatatatgacattatcagtgttccctatcatcaaataattgtaaaaaa
gi|13 : TTCACCAA-TA-----ATACTAGAT--GCCAAATACAAGTTT---TGTTTTGGAAATTGCCTTAAATCTCAATCAA-ATAAATtactgagatcacttgagcagtcaggt
gi|14 : GACTGTGGGCTAGAGGGAAATGGAATTCACAA-TTTTGACTTGATA--GTCAAGACACAATACCATCTGAACAAACTGGtcaatagt
gi|16 : ACAATGATCAGAATATAT--ATCA-CA-A--AGACAGTGGCTGGATCGGAATTTAATCTCACAAACCCTGGATTt
gi|17 : -GAAACTGTGGCAAGACTGCGATACAAATTCAAGACCCCAGGATTGATATGATC-AGATA
gi|2 : CCATCAAGGGCTAACAGATGATCAGTTA------ATAT-AACCA---TTGTTTCCTGGGATCCTGAAAGGTTAACCAGTACTCAAGCACACCCCATCTCCGCAAGTAACTGATAACTTTCTCTATTGAATCAGTGGTGAGAGACGAATGATAC--TGAGACACAATG-TCA---TATATAAATCATCACG-GAGACTGTTGCCGGGCGGGGATTCAAACTCACAACCTCTGGATTGATA--G---ACACACTG--CCAGCTGAGCTAATCGGGCCTGG-C------TACTAAAGGCAT-TTG-AGTTTAAGTA-AGATAACAAAAATCACTA-AAGTATTTTTGTGACATCGGGCCAGATG
gi|20 : tgtatctggctgtggtttccaaaaatatttaagtctgttatttttctcaaaattcaatagtatgctcaatttcatactaaacttgattgattgattgattaattgaatatttagcatcatttttatgCCAGT---A---AAACTGGATATGCCAT-----------CTGAA-TCAGTCTGTGGTATTCCTCCt
gi|22 : GGTCGAGTGGTTTAAAGTGTCGTCTAAAGATGACTTACTT
gi|23 : GTGGTC-AAAGGTCACTTGCCTCTCACTGCTGAGGTTG
gi|24 : AGGACAGAGGTCCTACTCAGATT--CATTCTGA
gi|3 : CCATTGAGGGCTAACAAATGATCAGTTACATGTAACCTTAACCA---CTATTTCCTCGGA--------GGTTAACAAGTATTCGAGTTCACCC-ATCTCTATATATAACCAA-AATTTCCCCACTTGAATCAGTGATGAGACATTAATGACAA--TGAAACACAATG-CCA---TATAACAATCATC-----------TGGCCAAACATGGATTCAAACTCACAACCTCGGGATTAGTA--GTC-AGATGCAGTACCAACTGAGCTAACTAGACCTGGTCATAAATTGCTGAA--TACATTATGGCTGAATGAC
gi|4 : tccagtgtatgttaaatttggtagtttttcgtaaattgttgattgtttgtatgaatatttggcgtcattcttatgCTATCAAGGGCTAACAGATGATCAGTTA------ACTT-AACCA---CTCTTTCCTGGAATCCTAAAAGGTTAAACAGTACTCAAGCACACCA-ATCTCCGCAAGTAACTGATAAATTTTGCACTGGAATCAGTTGCGAGAGATGAATGA-AA--TGAGACACAATG-TTG---TTTATCAATTCTCA-GAGAGACTGTGGGCTGGCGGTGACTCAAATTCACGACCCCTGGATTGATA--GTC-AGATACCATACCGACTGAACTAACCTGGTCCAG-Ctaaaccatatatataaatgcttataaaaatgttcaaaacagatcaacaacgtcgttcaaggac
gi|5 : gcatcaattttgcaCCATCGAGGGCTATCAGATGATCA----------ACCT-AACCA---TTATTTTCCGTGATCTCGGAAAGATAAGCAGTTATCGAGTACACCC-ATCTTCGCAAGCAACTGATAACTTTCCCATTTGAATCTGCGGTCAGATACGAGTGGTACTTTGAAACACTATtacccatgaatagtgatttcaagggtaggttgaataataaaa
gi|6 : cacttttatgttatattttggattacataatataatgtttagcgtcattctataAGACCACTTGCCTCTCACCGCTAATGTCGTGGGTTCGAGTCCCGCTCGCTCCAAAAAC-T-------------------TTACCAGTTGC-TTGCGGAAGGACAGTGGTCCTACTCAGATT--CATTATGAGGTCTTTCTCCAAAAAT---A---AAACTGGATATGCCATATACAAATAACCTG-A-c
gi|7 : CCATCGAAGGCTAACAGACGATGGGTTA------ACCT-----------------T---ATCCTGTAAGGTTAACCAGTACTCGAAGACACCaatatggtgaaaat
gi|8 : cactgatttgatgaatatnnnnnnnnnnnnnnnnnnnnnnnnnatatttagcgtcatgtttatgGTCAAAAGTTCACTTACATCTCACTGCTGAGGTTGTTGGTTCCAGGACCTCTTATTGCAAATAT-TGCAA-GTGAGTAACACTATTT-CTAG-TACATTGCAGAAGAACAGTGaaa
gi|9 : gtgatTCTG-GGTCTTCACCCACCAGTTACATGTACACTG--TATACAATAT----ATAACC--------G-CTG-GGTCTTCACCCACCAGTTACACGTACACTG--TATACAATATATAAC
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): CTTTTATCCAAGTCATGAAATGGTAGCCATATTTAGTGGATTTGTTAAAAAATTATGGGCTGGACATTTTATAGCAAAGTTTCAAATAAA
Unaligned ( gi|12 ): ATCAGGCAGTAATATGGTGGTTATTGGCCCTTATTTATATTGTGCGATCGCAACGGAAGAGGGACTTTATAACCCCAGTTT
Unaligned ( gi|15 ): GGCTCATTCAGGAAGGCTTTAAGCCTGATTTATCTTTGTTTCACAATCATTGTAAAATAATTAAGTAAAAA
Unaligned ( gi|18 ): TACATGTAAATACACTTTCATCATACATGTAAATTGTAGTTAACAACACAGTTCAA
Unaligned ( gi|19 ): ATTAATTATAAATTGAATATTAAGCATCATGTTTATGCCATTACAAAGCTAA
Unaligned ( gi|21 ): TTAATGTTAAGTGTCATTTTATGCCATTAAGGGCTTTCAGACAAC
Alignments
lowQualScore : 11111111111111111111
lowQualScore : 111111 111 1 111 111 22222 1 222222 1111 11 1 00000000000000000000 1 1 11 2222222 222222 111 2 1 33333 2222 1
lowQualScore : 0 999999 6 111 3 2 3 1 6 0 1 3 111 8 444 5 0 44444 1 77 1 5 0 7 0 0 888888 4444 7 22 6 1 2 1 1 5 33333 1 22 33 9 1 1 1 55555555555555555555 2 7 3 88 3 6666666 1 2 111111 3 777 7 6 3 33333 6 7 2222 1 1 1 1 5
lowQualScore : . ...... . ... . . . . . . . . ... . ... . . ..... . .. . . . . . . ...... .... . .. . . . . . . ..... . .. .. . . . . .................... . . . .. . ....... . . ...... . ... . . . ..... . . .... . . . . .
lowQualScore : 7 222222 7 777 3 5 7 0 0 8 0 8 666 0 000 0 8 22222 7 99 7 7 1 8 7 0 777777 7777 3 77 7 0 5 0 0 5 55555 0 00 55 8 4 0 0 00000000000000000000 0 3 3 33 2 0000000 0 5 555555 2 000 3 7 3 33333 7 3 5555 0 0 0 0 5
consensus : CCATCGAGGGCTAACAGACGATCAGTTA------ACCT-AACCA---TTNTTTCCTGGGATCCTGGAAGGTTAACCAGTACTCGAGNACACCC-ATCTCCGCAAGTAACTGATAACTTTCNCACTTGAATCAGCGGTGAGAGACGAATGATAA--TGAGACACAATG-TCG---TATATCAATCATCA-G-GAGACTGTGGCCGGGCGGGGATTCAAACTCACGACCCCTGGATTGATA--GTC-AGACACCGTACCGACCGAGCTAACCGGGCCCGG-CATA---TGCTGAAGGTATATTGCGGCTTAATTACANATCGCAANAATCANTATAAGTANNNCGGTNANNCGNGGCCGAGTGGTCTAAGGCGTCGTCTAAAGATCACTTACCTCTCACTGCTGANGTCGTNGGTTCGAGTCCCGCTCGCTCCAAAAAC-T-C-A-GTGAG-AA----GTTTGCCAGTTAC-TTGCGGAAGGACAGTGGTCCTACTCAGATT--CATTCTGAGGTCTTCCTCCACCAGT---A---ANACTGGATATGCCATAT----ATAACCTG-A-TCAGTCTG-GGTCTTCCTCCACCAG-TA-----ATACTGGATATGCCATATATAACCTNAAATGTNTTGGAAATNGCNTTAAACCTCANTCAATATAAGT
Reference ( family-5486 ) : CCATCGAGGGCTAACAGACGATCAGTTA------ACCT-AACCA---TTNTTTCCTGGGATCCTGGAAGGTTAACCAGTACTCGAGNACACCC-ATCTCCGCAAGTAACTGATAACTTTCNCACTTGAATCAGCGGTGAGAGACGAATGATAA--TGAGACACAATG-TCG---TATATCAATCATCA-G-GAGACTGTGGCCGGGCGGGGATTCAAACTCACGACCCCTGGATTGATA--GTC-AGACACCGTACCGACCGAGCTAACCGGGCCCGG-CATA---TGCTGAAGGTATATTGCGGCTTAATTACANATCGCAANAATCANTATAAGTANNNCGGTNANNCGNGGCCGAGTGGTCTAAGGCGTCGTCTAAAGATCACTTACCTCTCACTGCTGANGTCGTNGGTTCGAGTCCCGCTCGCTCCAAAAAC-T-C-A-GTGAG-AA----GTTTGCCAGTTAC-TTGCGGAAGGACAGTGGTCCTACTCAGATT--CATTCTGAGGTCTTCCTCCACCAGT---A---ANACTGGATATGCCATAT----ATAACCTG-A-TCAGTCTG-GGTCTTCCTCCACCAG-TA-----ATACTGGATATGCCATATATAACCTNAAATGTNTTGGAAATNGCNTTAAACCTCANTCAATATAAGT
gi|1 : CCATCGAGAGCTAACAGACGATCAGTTA------ACCT-AGCCAATGTTTTTTTCTGGGATCCTGGAAGGTTAACCAATACTCGAGAACACCCTAACTTTGCAAGTAACTGATAACTTTTACACTTGAATCAGCGGTGAGAGACGAATGATAA--TGAGACGCAATG-TCG---TATATCAACCATCATG-GAGATTGTGGCCGAACGGGAATTCGAACTCATGACCCCTGGGTTGATA--GTC-AGACACTGTAACGACCGAGCTTATCAGGCCCAG-CATA---TGTT-ATAGTATATTGCAGCTTATTTACATATCGTAATAATCAGTATAAGTAAAACGGTCAGCCGTGGCCGAGTGGTCTAAGGCGCCGTCTCAAGATCACTTACTTCTCACTGCCAATGTCGTAGGTTCGTGTCCCGCTCGCTCCAAAAACTT-T-ATGTGAGAAA----GTTTGCCAGTTAC-TTGCGGAAGGACGGTGGTTCCACACAGTCTCGCAGTCTGAAGTCTTCCTCCACCAGT---A---ATACTGGATATGCCATAT----ATAACCTG-ACTCAGTCTGAGGTCTTCCTCCACCAG-TA-----ATACTGGATATGCCATATATAACCTGAAATGTGTTGAAAATGGCGTTAAACCTCATTCAATATAAGT
gi|11 : GGTTCAAACTCACAACCACTGAATGGACA--GAT-GGGT----TACTGACCGAGCTATCTGGGaaaattgttcaacagaaatgatatatgacattatcagtgttccctatcatcaaataattgtaaaaaa
gi|13 : TTCACCAA-TA-----ATACTAGAT--GCCAAATACAAGTTT---TGTTTTGGAAATTGCCTTAAATCTCAATCAA-ATAAATtactgagatcacttgagcagtcaggt
gi|14 : GACTGTGGGCTAGAGGGAAATGGAATTCACAA-TTTTGACTTGATA--GTCAAGACACAATACCATCTGAACAAACTGGtcaatagt
gi|16 : ACAATGATCAGAATATAT--ATCA-CA-A--AGACAGTGGCTGGATCGGAATTTAATCTCACAAACCCTGGATTt
gi|17 : -GAAACTGTGGCAAGACTGCGATACAAATTCAAGACCCCAGGATTGATATGATC-AGATA
gi|2 : CCATCAAGGGCTAACAGATGATCAGTTA------ATAT-AACCA---TTGTTTCCTGGGATCCTGAAAGGTTAACCAGTACTCAAGCACACCCCATCTCCGCAAGTAACTGATAACTTTCTCTATTGAATCAGTGGTGAGAGACGAATGATAC--TGAGACACAATG-TCA---TATATAAATCATCACG-GAGACTGTTGCCGGGCGGGGATTCAAACTCACAACCTCTGGATTGATA--G---ACACACTG--CCAGCTGAGCTAATCGGGCCTGG-C------TACTAAAGGCAT-TTG-AGTTTAAGTA-AGATAACAAAAATCACTA-AAGTATTTTTGTGACATCGGGCCAGATG
gi|20 : tgtatctggctgtggtttccaaaaatatttaagtctgttatttttctcaaaattcaatagtatgctcaatttcatactaaacttgattgattgattgattaattgaatatttagcatcatttttatgCCAGT---A---AAACTGGATATGCCAT-----------CTGAA-TCAGTCTGTGGTATTCCTCCt
gi|22 : GGTCGAGTGGTTTAAAGTGTCGTCTAAAGATGACTTACTT
gi|23 : GTGGTC-AAAGGTCACTTGCCTCTCACTGCTGAGGTTG
gi|24 : AGGACAGAGGTCCTACTCAGATT--CATTCTGA
gi|3 : CCATTGAGGGCTAACAAATGATCAGTTACATGTAACCTTAACCA---CTATTTCCTCGGA--------GGTTAACAAGTATTCGAGTTCACCC-ATCTCTATATATAACCAA-AATTTCCCCACTTGAATCAGTGATGAGACATTAATGACAA--TGAAACACAATG-CCA---TATAACAATCATC-----------TGGCCAAACATGGATTCAAACTCACAACCTCGGGATTAGTA--GTC-AGATGCAGTACCAACTGAGCTAACTAGACCTGGTCATAAATTGCTGAA--TACATTATGGCTGAATGAC
gi|4 : tccagtgtatgttaaatttggtagtttttcgtaaattgttgattgtttgtatgaatatttggcgtcattcttatgCTATCAAGGGCTAACAGATGATCAGTTA------ACTT-AACCA---CTCTTTCCTGGAATCCTAAAAGGTTAAACAGTACTCAAGCACACCA-ATCTCCGCAAGTAACTGATAAATTTTGCACTGGAATCAGTTGCGAGAGATGAATGA-AA--TGAGACACAATG-TTG---TTTATCAATTCTCA-GAGAGACTGTGGGCTGGCGGTGACTCAAATTCACGACCCCTGGATTGATA--GTC-AGATACCATACCGACTGAACTAACCTGGTCCAG-Ctaaaccatatatataaatgcttataaaaatgttcaaaacagatcaacaacgtcgttcaaggac
gi|5 : gcatcaattttgcaCCATCGAGGGCTATCAGATGATCA----------ACCT-AACCA---TTATTTTCCGTGATCTCGGAAAGATAAGCAGTTATCGAGTACACCC-ATCTTCGCAAGCAACTGATAACTTTCCCATTTGAATCTGCGGTCAGATACGAGTGGTACTTTGAAACACTATtacccatgaatagtgatttcaagggtaggttgaataataaaa
gi|6 : cacttttatgttatattttggattacataatataatgtttagcgtcattctataAGACCACTTGCCTCTCACCGCTAATGTCGTGGGTTCGAGTCCCGCTCGCTCCAAAAAC-T-------------------TTACCAGTTGC-TTGCGGAAGGACAGTGGTCCTACTCAGATT--CATTATGAGGTCTTTCTCCAAAAAT---A---AAACTGGATATGCCATATACAAATAACCTG-A-c
gi|7 : CCATCGAAGGCTAACAGACGATGGGTTA------ACCT-----------------T---ATCCTGTAAGGTTAACCAGTACTCGAAGACACCaatatggtgaaaat
gi|8 : cactgatttgatgaatatnnnnnnnnnnnnnnnnnnnnnnnnnatatttagcgtcatgtttatgGTCAAAAGTTCACTTACATCTCACTGCTGAGGTTGTTGGTTCCAGGACCTCTTATTGCAAATAT-TGCAA-GTGAGTAACACTATTT-CTAG-TACATTGCAGAAGAACAGTGaaa
gi|9 : gtgatTCTG-GGTCTTCACCCACCAGTTACATGTACACTG--TATACAATAT----ATAACC--------G-CTG-GGTCTTCACCCACCAGTTACACGTACACTG--TATACAATATATAAC
blockSeqs : CATGTA T . G G A C C T T CTT A GAA A ACGG T TG A A A T ATAAAT AAAG A TG C G A A C . TTTTT G CA CG T T G G TGCAAGTGAGTAACACTA A T A . A TACATGT A G ATACAA T AA T T T CACGT G A T T T C A .
blockSeqs : . . . A C A T . C C C . . C AGAG G . T . T . . GAA . A . A C T T T . . . . A A A G AT T A . . . . . .
blockSeqs : . . . C G G C . G T A . . C AA A . T . A . . C G . A C . . . .
blockSeqs : . . . A G T T . C . A . . . . G . T . C A
blockSeqs : . . . . . . G A . T . .
blockSeqs : T . . .
blockSeqCons : ***
originalCons : CCATCGAGGGCTAACAGACGATCAGTTA------ACCT-AACCA---TTNTTTCCTGGGATCCTGGAAGGTTAACCAGTACTCGAGNACACCC-ATCTCCGCAAGTAACTGATAACTTTCNCACTTGAATCAGCGGTGAGAGACGAATGATAA--TGAGACACAATG-TCG---TATATCAATCATCA-G-GAGACTGTGGCCGGGCGGGGATTCAAACTCACGACCCCTGGATTGATA--GTC-AGACACCGTACCGACCGAGCTAACCGGGCCCGG-CATA---TGCTGAAGGTATATTGCGGCTTAATTACANATCGCAANAATCANTATAAGTANNNCGGTNANNCGNGGCCGAGTGGTCTAAGGCGTCGTCTAAAGATCACTTACCTCTCACTGCTGANGTCGTNGGTTCGAGTCCCGCTCGCTCCAAAAAC-T-C-A-GTGAG-AA----GTTTGCCAGTTAC-TTGCGGAAGGACAGTGGTCCTACTCAGATT--CATTCTGAGGTCTTCCTCCACCAGT---A---ANACTGGATATGCCATAT----ATAACCTG-A-TCAGTCTG-GGTCTTCCTCCACCAG-TA-----ATACTGGATATGCCATATATAACCTNAAATGTNTTGGAAATNGCNTTAAACCTCANTCAATATAAGT
finalCons : CCATCGAGGGCTAACAGACGATCAGTTA------ACCT-AACCA---TTNTTTCCTGGGATCCTGGAAGGTTAACCAGTACTCGAGNACACCC-ATCTCCGCAAGTAACTGATAACTTTCNCACTTGAATCAGCGGTGAGAGACGAATGATAA--TGAGACACAATG-TCG---TATATCAATCATCA-G-GAGACTGTGGCCGGGCGGGGATTCAAACTCACGACCCCTGGATTGATA--GTC-AGACACCGTACCGACCGAGCTAACCGGGCCCGG-CATA---TGCTGAAGGTATATTGCGGCTTAATTACANATCGCAANAATCANTATAAGTANNNCGGTNANNCGNGGCCGAGTGGTCTAAGGCGTCGTCTAAAGATCACTTACCTCTCACTGCTGANGTCGTNGGTTCGAGTCCCGCTCGCTCCAAAAAC-T-C-A-GTGAG-AA----GTTTGCCAGTTAC-TTGCGGAAGGACAGTGGTCCTACTCAGATT--CATTCTGAGGTCTTCCTCCACCAGT---A---ANACTGGATATGCCATAT----ATAACCTG-A-TCAGTCTG-GGTCTTCCTCCACCAG-TA-----ATACTGGATATGCCATATATAACCTNAAATGTNTTGGAAATNGCNTTAAACCTCANTCAATATAAGT
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): CTTTTATCCAAGTCATGAAATGGTAGCCATATTTAGTGGATTTGTTAAAAAATTATGGGCTGGACATTTTATAGCAAAGTTTCAAATAAA
Unaligned ( gi|12 ): ATCAGGCAGTAATATGGTGGTTATTGGCCCTTATTTATATTGTGCGATCGCAACGGAAGAGGGACTTTATAACCCCAGTTT
Unaligned ( gi|15 ): GGCTCATTCAGGAAGGCTTTAAGCCTGATTTATCTTTGTTTCACAATCATTGTAAAATAATTAAGTAAAAA
Unaligned ( gi|18 ): TACATGTAAATACACTTTCATCATACATGTAAATTGTAGTTAACAACACAGTTCAA
Unaligned ( gi|19 ): ATTAATTATAAATTGAATATTAAGCATCATGTTTATGCCATTACAAAGCTAA
Unaligned ( gi|21 ): TTAATGTTAAGTGTCATTTTATGCCATTAAGGGCTTTCAGACAAC
Alignments
lowQualScore : 11111111111111111111
lowQualScore : 111111 111 1 111 111 22222 1 222222 1111 11 1 00000000000000000000 1 1 11 2222222 222222 111 2 1 33333 2222 1
lowQualScore : 0 999999 6 111 3 2 3 1 6 0 1 3 111 8 444 5 0 44444 1 77 1 5 0 7 0 0 888888 4444 7 22 6 1 2 1 1 5 33333 1 22 33 9 1 1 1 55555555555555555555 2 7 3 88 3 6666666 1 2 111111 3 777 7 6 3 33333 6 7 2222 1 1 1 1 5
lowQualScore : . ...... . ... . . . . . . . . ... . ... . . ..... . .. . . . . . . ...... .... . .. . . . . . . ..... . .. .. . . . . .................... . . . .. . ....... . . ...... . ... . . . ..... . . .... . . . . .
lowQualScore : 7 222222 7 777 3 5 7 0 0 8 0 8 666 0 000 0 8 22222 7 99 7 7 1 8 7 0 777777 7777 3 77 7 0 5 0 0 5 55555 0 00 55 8 4 0 0 00000000000000000000 0 3 3 33 2 0000000 0 5 555555 2 000 3 7 3 33333 7 3 5555 0 0 0 0 5
consensus : CCATCGAGGGCTAACAGACGATCAGTTA------ACCT-AACCA---TTNTTTCCTGGGATCCTGGAAGGTTAACCAGTACTCGAGNACACCC-ATCTCCGCAAGTAACTGATAACTTTCNCACTTGAATCAGCGGTGAGAGACGAATGATAA--TGAGACACAATG-TCG---TATATCAATCATCA-G-GAGACTGTGGCCGGGCGGGGATTCAAACTCACGACCCCTGGATTGATA--GTC-AGACACCGTACCGACCGAGCTAACCGGGCCCGG-CATA---TGCTGAAGGTATATTGCGGCTTAATTACANATCGCAANAATCANTATAAGTANNNCGGTNANNCGNGGCCGAGTGGTCTAAGGCGTCGTCTAAAGATCACTTACCTCTCACTGCTGANGTCGTNGGTTCGAGTCCCGCTCGCTCCAAAAAC-T-C-A-GTGAG-AA----GTTTGCCAGTTAC-TTGCGGAAGGACAGTGGTCCTACTCAGATT--CATTCTGAGGTCTTCCTCCACCAGT---A---ANACTGGATATGCCATAT----ATAACCTG-A-TCAGTCTG-GGTCTTCCTCCACCAG-TA-----ATACTGGATATGCCATATATAACCTNAAATGTNTTGGAAATNGCNTTAAACCTCANTCAATATAAGT
Reference ( family-5486 ) : CCATCGAGGGCTAACAGACGATCAGTTA------ACCT-AACCA---TTNTTTCCTGGGATCCTGGAAGGTTAACCAGTACTCGAGNACACCC-ATCTCCGCAAGTAACTGATAACTTTCNCACTTGAATCAGCGGTGAGAGACGAATGATAA--TGAGACACAATG-TCG---TATATCAATCATCA-G-GAGACTGTGGCCGGGCGGGGATTCAAACTCACGACCCCTGGATTGATA--GTC-AGACACCGTACCGACCGAGCTAACCGGGCCCGG-CATA---TGCTGAAGGTATATTGCGGCTTAATTACANATCGCAANAATCANTATAAGTANNNCGGTNANNCGNGGCCGAGTGGTCTAAGGCGTCGTCTAAAGATCACTTACCTCTCACTGCTGANGTCGTNGGTTCGAGTCCCGCTCGCTCCAAAAAC-T-C-A-GTGAG-AA----GTTTGCCAGTTAC-TTGCGGAAGGACAGTGGTCCTACTCAGATT--CATTCTGAGGTCTTCCTCCACCAGT---A---ANACTGGATATGCCATAT----ATAACCTG-A-TCAGTCTG-GGTCTTCCTCCACCAG-TA-----ATACTGGATATGCCATATATAACCTNAAATGTNTTGGAAATNGCNTTAAACCTCANTCAATATAAGT
gi|1 : CCATCGAGAGCTAACAGACGATCAGTTA------ACCT-AGCCAATGTTTTTTTCTGGGATCCTGGAAGGTTAACCAATACTCGAGAACACCCTAACTTTGCAAGTAACTGATAACTTTTACACTTGAATCAGCGGTGAGAGACGAATGATAA--TGAGACGCAATG-TCG---TATATCAACCATCATG-GAGATTGTGGCCGAACGGGAATTCGAACTCATGACCCCTGGGTTGATA--GTC-AGACACTGTAACGACCGAGCTTATCAGGCCCAG-CATA---TGTT-ATAGTATATTGCAGCTTATTTACATATCGTAATAATCAGTATAAGTAAAACGGTCAGCCGTGGCCGAGTGGTCTAAGGCGCCGTCTCAAGATCACTTACTTCTCACTGCCAATGTCGTAGGTTCGTGTCCCGCTCGCTCCAAAAACTT-T-ATGTGAGAAA----GTTTGCCAGTTAC-TTGCGGAAGGACGGTGGTTCCACACAGTCTCGCAGTCTGAAGTCTTCCTCCACCAGT---A---ATACTGGATATGCCATAT----ATAACCTG-ACTCAGTCTGAGGTCTTCCTCCACCAG-TA-----ATACTGGATATGCCATATATAACCTGAAATGTGTTGAAAATGGCGTTAAACCTCATTCAATATAAGT
gi|11 : GGTTCAAACTCACAACCACTGAATGGACA--GAT-GGGT----TACTGACCGAGCTATCTGGGaaaattgttcaacagaaatgatatatgacattatcagtgttccctatcatcaaataattgtaaaaaa
gi|13 : TTCACCAA-TA-----ATACTAGAT--GCCAAATACAAGTTT---TGTTTTGGAAATTGCCTTAAATCTCAATCAA-ATAAATtactgagatcacttgagcagtcaggt
gi|14 : GACTGTGGGCTAGAGGGAAATGGAATTCACAA-TTTTGACTTGATA--GTCAAGACACAATACCATCTGAACAAACTGGtcaatagt
gi|16 : ACAATGATCAGAATATAT--ATCA-CA-A--AGACAGTGGCTGGATCGGAATTTAATCTCACAAACCCTGGATTt
gi|17 : -GAAACTGTGGCAAGACTGCGATACAAATTCAAGACCCCAGGATTGATATGATC-AGATA
gi|2 : CCATCAAGGGCTAACAGATGATCAGTTA------ATAT-AACCA---TTGTTTCCTGGGATCCTGAAAGGTTAACCAGTACTCAAGCACACCCCATCTCCGCAAGTAACTGATAACTTTCTCTATTGAATCAGTGGTGAGAGACGAATGATAC--TGAGACACAATG-TCA---TATATAAATCATCACG-GAGACTGTTGCCGGGCGGGGATTCAAACTCACAACCTCTGGATTGATA--G---ACACACTG--CCAGCTGAGCTAATCGGGCCTGG-C------TACTAAAGGCAT-TTG-AGTTTAAGTA-AGATAACAAAAATCACTA-AAGTATTTTTGTGACATCGGGCCAGATG
gi|20 : tgtatctggctgtggtttccaaaaatatttaagtctgttatttttctcaaaattcaatagtatgctcaatttcatactaaacttgattgattgattgattaattgaatatttagcatcatttttatgCCAGT---A---AAACTGGATATGCCAT-----------CTGAA-TCAGTCTGTGGTATTCCTCCt
gi|22 : GGTCGAGTGGTTTAAAGTGTCGTCTAAAGATGACTTACTT
gi|23 : GTGGTC-AAAGGTCACTTGCCTCTCACTGCTGAGGTTG
gi|24 : AGGACAGAGGTCCTACTCAGATT--CATTCTGA
gi|3 : CCATTGAGGGCTAACAAATGATCAGTTACATGTAACCTTAACCA---CTATTTCCTCGGA--------GGTTAACAAGTATTCGAGTTCACCC-ATCTCTATATATAACCAA-AATTTCCCCACTTGAATCAGTGATGAGACATTAATGACAA--TGAAACACAATG-CCA---TATAACAATCATC-----------TGGCCAAACATGGATTCAAACTCACAACCTCGGGATTAGTA--GTC-AGATGCAGTACCAACTGAGCTAACTAGACCTGGTCATAAATTGCTGAA--TACATTATGGCTGAATGAC
gi|4 : tccagtgtatgttaaatttggtagtttttcgtaaattgttgattgtttgtatgaatatttggcgtcattcttatgCTATCAAGGGCTAACAGATGATCAGTTA------ACTT-AACCA---CTCTTTCCTGGAATCCTAAAAGGTTAAACAGTACTCAAGCACACCA-ATCTCCGCAAGTAACTGATAAATTTTGCACTGGAATCAGTTGCGAGAGATGAATGA-AA--TGAGACACAATG-TTG---TTTATCAATTCTCA-GAGAGACTGTGGGCTGGCGGTGACTCAAATTCACGACCCCTGGATTGATA--GTC-AGATACCATACCGACTGAACTAACCTGGTCCAG-Ctaaaccatatatataaatgcttataaaaatgttcaaaacagatcaacaacgtcgttcaaggac
gi|5 : gcatcaattttgcaCCATCGAGGGCTATCAGATGATCA----------ACCT-AACCA---TTATTTTCCGTGATCTCGGAAAGATAAGCAGTTATCGAGTACACCC-ATCTTCGCAAGCAACTGATAACTTTCCCATTTGAATCTGCGGTCAGATACGAGTGGTACTTTGAAACACTATtacccatgaatagtgatttcaagggtaggttgaataataaaa
gi|6 : cacttttatgttatattttggattacataatataatgtttagcgtcattctataAGACCACTTGCCTCTCACCGCTAATGTCGTGGGTTCGAGTCCCGCTCGCTCCAAAAAC-T-------------------TTACCAGTTGC-TTGCGGAAGGACAGTGGTCCTACTCAGATT--CATTATGAGGTCTTTCTCCAAAAAT---A---AAACTGGATATGCCATATACAAATAACCTG-A-c
gi|7 : CCATCGAAGGCTAACAGACGATGGGTTA------ACCT-----------------T---ATCCTGTAAGGTTAACCAGTACTCGAAGACACCaatatggtgaaaat
gi|8 : cactgatttgatgaatatnnnnnnnnnnnnnnnnnnnnnnnnnatatttagcgtcatgtttatgGTCAAAAGTTCACTTACATCTCACTGCTGAGGTTGTTGGTTCCAGGACCTCTTATTGCAAATAT-TGCAA-GTGAGTAACACTATTT-CTAG-TACATTGCAGAAGAACAGTGaaa
gi|9 : gtgatTCTG-GGTCTTCACCCACCAGTTACATGTACACTG--TATACAATAT----ATAACC--------G-CTG-GGTCTTCACCCACCAGTTACACGTACACTG--TATACAATATATAAC
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): CTTTTATCCAAGTCATGAAATGGTAGCCATATTTAGTGGATTTGTTAAAAAATTATGGGCTGGACATTTTATAGCAAAGTTTCAAATAAA
Unaligned ( gi|12 ): ATCAGGCAGTAATATGGTGGTTATTGGCCCTTATTTATATTGTGCGATCGCAACGGAAGAGGGACTTTATAACCCCAGTTT
Unaligned ( gi|15 ): GGCTCATTCAGGAAGGCTTTAAGCCTGATTTATCTTTGTTTCACAATCATTGTAAAATAATTAAGTAAAAA
Unaligned ( gi|18 ): TACATGTAAATACACTTTCATCATACATGTAAATTGTAGTTAACAACACAGTTCAA
Unaligned ( gi|19 ): ATTAATTATAAATTGAATATTAAGCATCATGTTTATGCCATTACAAAGCTAA
Unaligned ( gi|21 ): TTAATGTTAAGTGTCATTTTATGCCATTAAGGGCTTTCAGACAAC