lowQualScore : 1111111111111111111111111111111111111111111
lowQualScore : 11 1 1111 11111 222222222 22222222 1111 111 1111 111 5555555555555555555555555555555555555555555 1111 444444444444444444444444444 222222222 11111111 111 2222222222 1111111 11 3333333333333 11 222
lowQualScore : 9 55 1 6 3 1 2 99 1 1111 44444 66 000000000 66 5 5 0 4 1 66 44444444 5 9999 5 666 0 5 1 66 3 6 1111 000 77 5 6666666666666666666666666666666666666666666 99 1 7 5 2222 888888888888888888888888888 5 333333333 55555555 3 7 333 4 5555555555 2222222 4 1 2 4 44 0 0 8888888 6666666666666 33 6 111
lowQualScore : . .. . . . . . .. . .... ..... .. ......... .. . . . . . .. ........ . .... . ... . . . .. . . .... ... .. . ........................................... .. . . . .... ........................... . ......... ........ . . ... . .......... ....... . . . . .. . . ....... ............. .. . ...
lowQualScore : 0 88 4 0 5 7 3 22 7 3333 33333 99 000000000 99 7 7 1 3 9 99 11111111 0 7777 7 333 1 7 7 88 2 7 2222 000 99 7 2222222222222222222222222222222222222222222 22 7 3 7 1111 999999999999999999999999999 7 777777777 88888888 4 1 222 4 5555555555 6666666 4 0 0 4 99 8 4 7777777 4444444444444 88 7 000
consensus : TTTTTTTTTAGCCAAGATTAATGACCCGTTTATTGTTTATA--CATACACATACATA-ACACA-----AGCAT--AAC---------ATGACA--ATATAGAATT-TTGATATAT-CGAATTAACATGTATNTCCCAACATCAT--TTAATA------ATCAT-CATCATTATTCA-TCATGCATTATTC-ATTAAGTCATCAAGTTTTATAACCATT-CATTCATTTG--A-TTGTTTA---ATTGCACTCAT--T-TATACGTTCGTT----C---GTTC-TT--TTC----TTCGTT----CGTTCAT--TCAATGATAGAAAC-TTATTTT----ACGTTA------TAANAA-----TAAT------TA-ATAAAT-------AATGATTATCATAATAGTA----A--GAGACTATCTGTATGAAT-TCAG-TATAATA---TTATTA-T-T--CTTTT-ATATATCATCATTTCTTTATAATTTGCC-AATGTTCAATATCTTACCGAAACGAAAAAGCAAGACATAAGATATGGACA-GTAATAAAA--GA---------AAAT--AAATGTTTGAACCAATG
Reference ( gi|1 ) : TTCTTTTTGAGCCAAGACTAATGACCCGTTTATTGTTTTTA--CATACACATACGTA-ACACA-----AGCAT--AAC---------ATGACA--ATATAGAATT-TTGATATAT-TGAATTAACATGTATATCCCAACATCAT--TTAATA------ATCAT-CATCATTATTCA-TCATGAATTATTC-ATTAAGTCATCAAGTTTTATAACCATT-CATTCATTTG--A-TTGTTTA---ATTACACTCAT--T-TATACGTTCGTT----C---GTTCTTTCGTTCG---TTCGTTTTTTCGTTCAT--TCAATGATAGAGAC-TTATTTT----ACGTTA------TATCAA-----TATT------TA-ATAAAT-------GATGATTATCATAATAGTA----A--AAGACTATCTGTGTGACT-TCAG-TAAAATA---ATATTA-T-T--CTTTT-ATATATCATCATTTCTTTATAATTTGCC-AATGTTCAATATCTTACCGAAACGAAAAAGCAAGACATAAGATATGGACA-GTAATGAAA--GA---------AAAT--AAATGTTTGAACCAATG
gi|3 : TTTTTTTTG--CCAAGATTAATGACCCGTTTATTGTCTATA--CATACACATACATA-ACATA-----AACAT--AAC---------ATGACA--ATATAGAATT-TTGATATAT-TGAATTAACATGTATATCCCAACATCAT--TTAATA------ATCAT-CA----TATTCA-TCATGCATTATTC-ATTAAGTCATCAGGTTTTATAAACATG-CATCCATTTG--A-TTGTTTA---AATACATTCAT--T-TATACGTTCGTT----C---GTTCATT-----------------------------CAATGATAGAAAC-TTATTTT----ACGTTA------TAATAC-----TAAT------TA-ATAAAC-------AATGATTATCATAATAGTA----A--GAGGTTATCTGTACGAAT-TCAG-T---ATA---ATATTA---------TT-AT---------TTTCTTTATAATTTGCC-AATGTTCAATATCTTACAGAAACGAATAAGC-ATACATAAGATAT
gi|17 : TTATTTTT-AGCCAAGGTTAATGACCTGTTTATTGTTTATA--CATACACATATATA-ACACA-----AGCAT--AAC---------GTGACA--ATA
gi|5 : TTTTTTTTAACTAAGATTAATGACCCGTTACTTGTTTATA--CCTGCACATACATA-GCACA-----AGCAT--AAC---------ATGACA--ATATAGAATT-TTGATATAT-TGAATTAACATGTAAATCCGAACATCAT--TTAATT------TTCAT-CA----TATTCA-TCATGTATTATTC-ATTAAGTCACCAAGTTTTATAACCATT-CATTCATTTG--A-TTGTTTA---ATTACACTCAT--T-TATACGTTCGTT----C---GTT-----------------------CATTTAT--TCAATGATAGAAAC-----TTT----ACGTTA------TCAAAA-----TAAT------TA-ATAAAT-------AATGATTTTCATAATAGTA----AG-AAGA-TATATGTATGTTT-TCAG-TATACTA---TTGTTA-T-T--CTTTT-ATATAACATCATTTCTTCATAATCTGCC-AATGTT
gi|2 : TTTTTTAGCCATGATTAATGATCCGCTTATTGTTTATA--CATACACA----------CA-----AACAT--AAC---------ATGACA--ATATAGAAGT-TTGATATAT-CGAATTAACATACATTTCCCATCATCAT--TTAAT---------CAT-CATCAT-ATTCA-TCATGA-TTACTC-AATACTTCATTAAAATGTATAACCATT-TATGCATTCA--T-TCATTTT---ATTGT--TTAA--T-TACACA-----------------CATTCATTCG---TTCGTT----CATTCAT--TCATTGATGGAAACATTATTTT----ATGTTG------TTAAAA-----TAAA------TA-AAAAA---------ATAATTATCATAGTAGTA----A--GAGACTATCTGTATTAAT-TTAG-TGTAACA---TTGTTA-T-T--TTTTTTATGTATCATC-TTTTTTTATAATTTGCC-AATGTTCAATATCTTACCGAAAC-CAAAAGCAAGACATAAAATATAGACA-GTAATAAAA--
gi|10 : TTTTTTAGCCATGATTAATGACCCAT---TTGTTTTTATTCATACATACATGTATATGCAATTTGAGCAT--AACATGACAACGATGACA--ACACAGAATTATTAATACATGCAAACAAACATA-ACATGACAACAGAATTATTAATA--------CATACATatgcagttttgtacgaatg
gi|8 : tcatATGACCCATATATTAT----A--AATGCACATGC----ACA-A-----AGTTTTTAAT---------ATAACACAACTTTGCATT-TCGATATCT-TGAATTAACATGTATGCTTC--CATCA------------------AT-TATTTTTATCCATTCAT---TCATTCTATGAACTCATTAA---TTGC-----TT-CATTCATTTG--ATTTGTTTACTCATTG-ATTCAT--T-TATTCATT-GCTAATAC----TTCTTT-ATTC----TTCGT
gi|12 : CATA-ACACA-----AACAT--AAC---------ATTACA--ATATAGACTT-TTTATATAT-TGAATTAACATATATTTCCCATCATCAT--TTAATA------ATCAT-CAT-ATTA---A-TCATCCATTATTC-ATTAAGT
gi|4 : cgcttagaattttcGCAT--AAC---------ATGACA--ATATAGAATT-TTGATATAT-TGTATTAACATGTATTTCCCAACATCAT--TTAATA------ATCAT---TC--TATTCA-TCATGCATTATTC-ATTAAGTCATCAAGTTTTATAACTATC-CATTCATTTG--A-TTGTTTA---ATTACACTGAT--T-TAAAT-TTCGTT----C---GTTC----GTTC---------------GTTCAT--TCAATGATAGAAAC-TGTTTTT----ACGTTA------TAATGA-----TAAT------CA-ATAAAT-------AACGATTATCATAATAGTA----A--GAGGCTATCTGTATGAAT-TCAG-TATAATG---TTATTA-T-T--CTTTT-ATATATCATCATTCCTTTATAATTTGCC-AATGTTCAATATCTTACTGAAACGAAAAAGCAAGACATATGATATGAACA-ttta
gi|14 : CATCAT--TTAATAATCAACATCAT-CATCATTTTTCA-TCATCAG-TA-TC-A--GAGTCATCA--TTGTCGCACCATTACATTCAATAGATA-TTGGCTA---CATGCACTCAT--TCTATATATTTTTT----C---cgctaaaacgaa
gi|9 : GTTTA---ATTACACTCATATT-TATACGT------------------------------TCGTTTGTTCATTCAT--TCAATGATAGAAAC-TTATTTT----ACGTTATT----TAT-AA-----TGAT------TA-ATAAAT-------AATGATTATCATAATAGTA----A--GAGGATATCTGTATGAAA-TCAG-T
gi|6 : TTCGTT----TCAGGTTCTATCTTTTAAACTTC--TTTTTTGGTCATCATCGATGAT-----C-TCATTCTTTCAACATTAATTTATTATCAAGTTGTCATTCTGGAATACATAAATACACATTGATGATAATACTAATAGTATAATAGTAAGATTATC-------CTCTCGA-TAAA-TAC--ATTTTAATAT--ATTTT-ATATAACACCACATATTTAGAATTTGCC-ACGGTTCCATATCTTGCCGAATCG-GAAAGTAAGCCATATAA-ACTGATA-GTAATAACG--GA---------Attgtgacagatgcattatgtttaacctatgttctgt
gi|15 : GAAAC-TTATTTT----ACGTTA------TAATAA-----TGAT------TA-ATAAAT-------AACGATTATCATAATAGTA----A--GAGACTATCTGTATGAAT-TCAG-T---ATA---TTATTA-T-T--ACTTT-ATATATCAACTTTTCTTTA
gi|7 : GTA----A--GCGACTATTTGTATGAAA-GAAG-TTTAATT---TTATTA-T-T--CTTTT-ATATATCATCATTCCTTTATAATTTGCC-AATGTTCAATATCTTACCGAAACGAAAAAGCAAGACATATGATATGGACACGC--TAAAA--CG---------AAGT--ACATGTa
gi|11 : CAGATAAAATAGCAAGATTA-A-TGACTTTA-ATTTGTTATAATT-CTTTATAATTTGCC-ATTGATCAGTATCTTGCCTGATCG-AAAAGCAAGACATAAGTTAAAGACA-G-AACTAAA--GG---------AGATTGTAAT-TTTGAACCAacaagattcgatatttagatttccgctttttctttggttataaagaaaggatgtaatttataactgttttattttctttgttcagcccgatttatgttatttgatcttttaaaga
gi|13 : TTT--TATATTATCATTTTTCAATA--TTGCTTAATGTTCAATATCTTACCGAAAC-AAGAAGCATATCACCAGTTATAAACA-TTGGTAAAATCAATGCAATTTTAAAT--AAATGTTTA---CAATG
gi|16 : tttgTTCTTTATAATTTGCC-AATGTTCATTGTCTTACCGAAACG-AAAAGCAAGACATAAAATATGAACA-ATATTAAAA--GA---------AAAT--
Alignments
lowQualScore : 111111111111111111111111111111
lowQualScore : 111 111111 111111111 11111111 2222 22222222 111111111111111111111111111111 1111 111111111 11 222222222 1
lowQualScore : 000 66 11 444444 777777777 5 77 1 0 66 99999999 4 0000 5 33 0 33 1 66666666 77 5 888 2 66 5 2 888888888888888888888888888888 2222 5 5 666666666 5 0 888 9999 66 4 66 5 5 2 0 4 11 5 33 77 666666666 0 2 7
lowQualScore : ... .. .. ...... ......... . .. . . .. ........ . .... . .. . .. . ........ .. . ... . .. . . .............................. .... . . ......... . . ... .... .. . .. . . . . . .. . .. .. ......... . . .
lowQualScore : 000 99 66 444444 888888888 0 00 0 5 11 44444444 4 2222 0 99 4 11 4 44444444 99 7 888 0 99 0 2 444444444444444444444444444444 1111 0 0 222222222 0 9 888 4444 11 4 11 5 0 9 9 0 11 0 99 99 777777777 0 5 3
consensus : TTTTTTTTTAGCCAAGATTAATGACCCGTTTA---TTGTTTATACATACACATACAT--AACACA------AGCATAAC---------ATGACAATATAGAATT-TTGATATAT-TGAATTAACATGTATNTCCCAACATCAT--TTAATA------ATCAT-CATCATTATTCA-TCATGCATTATTCATTAAGTCATCAAGTTTTATAACCATT--------CATTCATTTG--A-TTGTTTA---ATTACACTCAT--T-TATACGTTCGTT----CGTTC----------G--------TTCGTTC----ATTCAATGATAGAAAC-TTATT-TTACGTTATN-AT-----AATA-ATTAATAAATAATGATTATCATA---ATAGTA----AG--AGGCTATC-TGT--ATGAATTCAGTATAATATTATTA-TTCTTTTATATATCATCATTTCTTTATAATTTGCC-AATGTTCAATATCTTACCGAAACGAAAAAGCAAGACATAAGATATGGACA-GTANTAAAA--GA---------AAATA-AATGTTTGAACCAATG
Reference ( family-548 ) : TTTTTTTTTAGCCAAGATTAATGACCCGTTTA---TTGTTTATACATACACATACAT--AACACA------AGCATAAC---------ATGACAATATAGAATT-TTGATATAT-CGAATTAACATGTATNTCCCAACATCAT--TTAATA------ATCAT-CATCATTATTCA-TCATGCATTATTCATTAAGTCATCAAGTTTTATAACCATT--------CATTCATTTG--A-TTGTTTA---ATTGCACTCAT--T-TATACGTTCGTT----CGTTCTT--TTCTTCG--------TTCGTTC----ATTCAATGATAGAAAC-TTATT-TTACGTTATA-AN-----AATA-ATTAATAAATAATGATTATCATA---ATAGTA----AG--AGACTATC-TGT--ATGAATTCAGTATAATATTATTA-TTCTTTTATATATCATCATTTCTTTATAATTTGCC-AATGTTCAATATCTTACCGAAACGAAAAAGCAAGACATAAGATATGGACA-GTAATAAAA--GA---------AAATA-AATGTTTGAACCAATG
gi|1 : TTCTTTTTGAGCCAAGACTAATGACCCGTTTA---TTGTTTTTACATACACATACGT--AACACA------AGCATAAC---------ATGACAATATAGAATT-TTGATATAT-TGAATTAACATGTATATCCCAACATCAT--TTAATA------ATCAT-CATCATTATTCA-TCATGAATTATTCATTAAGTCATCAAGTTTTATAACCATT--------CATTCATTTG--A-TTGTTTA---ATTACACTCAT--T-TATACGTTCGTT----CGTTCTT--TCGTTCGTTCGTTTTTTCGTTC----ATTCAATGATAGAGAC-TTATT-TTACGTTATA-TC-----AATA-TTTAATAAATGATGATTATCATA---ATAGTA----AA--AGACTATC-TGT--GTGACTTCAGTAAAATAATATTA-TTCTTTTATATATCATCATTTCTTTATAATTTGCC-AATGTTCAATATCTTACCGAAACGAAAAAGCAAGACATAAGATATGGACA-GTAATGAAA--GA---------AAATA-AATGTTTGAACCAATG
gi|10 : TTTTTTTAGCCATGATTAATGACCCATTTGTTTTTATTCATACATACATGTATATGCAATTTG------AGCATAACATGACAACGATGACAACACAGAATTATTAATACATGCAAACAAACATA-ACATGACAACAGAATTATTAATA--------CATACAT
gi|11 : tcaCTTTAATTTGTTATAATT-CTTTATAATTTGCC-ATTGATCAGTATCTTGCCTGATCG-AAAAGCAAGACATAAGTTAAAGACA-GAACTAAAG--GA---------GATTGTAAT-TTTGAACCA
gi|12 : cagataaaatagcaagattaatgaCAT--AACACA------AACATAAC---------ATTACAATATAGACTT-TTTATATAT-TGAATTAACATATATTTCCCATCATCAT--TTAATA------ATCAT-CAT-ATTA---A-TCATCCATTATTCATTAAGT
gi|13 : cgcttagaattttcTTT-TATATTATCATTTTTCAATA--TTGCTTAATGTTCAATATCTTACCGAAAC-AAGAAGCATATCACCAGTTATAAACA-TTGGTAAAATCAATGCAATTTTAAATA-AATGTTTA---CAATGttta
gi|14 : tttgCATCAT--TTAATAATCAACATCAT-CATCATTTTTCA-TCAT-CAGTA-TCA--GAGTCATCA--TTGTCGCACCATTA-------CATTCAATAGATA-TTGGCTA---CATGCACTCAT--TCTATATATTTTTT----C
gi|15 : GAAAC-TTATT-TTACGTTATA-AT-----AATG-ATTAATAAATAACGATTATCATA---ATAGTA----AG--AGACTATC-TGT--ATGAATTCAGT---ATATTATTA-TTACTTTATATATCAACTTTTCTTTA
gi|16 : TTCTTTATAATTTGCC-AATGTTCATTGTCTTACCGAAACG-AAAAGCAAGACATAAAATATGAACA-ATATTAAAA--GA---------AAATa
gi|17 : TTATTTTTAGCCAAGGTTAATGACCTGTTTA---TTGTTTATACATACACATATAT--AACACA------AGCATAAC---------GTGACAATAgcaattaatggaact
gi|2 : TTTTTTAGCCATGATTAATGATCCGCTTA---TTGTTTATACATACACA-----------CA------AACATAAC---------ATGACAATATAGAAGT-TTGATATAT-CGAATTAACATACATTTCCCATCATCAT--TTAAT---------CAT-CATCAT-ATTCA-TCATG-ATTACTCAATACTTCATTAAAATGTATAACCATTTATGCATTCATTCATTTT--A-TTGTTTA---ATTACAC-----------ACATTCATT----CGTTC----------G--------TTCATTC----ATTCATTGATGGAAACATTATT-TTATGTTGTT-AA-----AATA-AATAA-AAA-AATAATTATCATA---GTAGTA----AG--AGACTATC-TGT--ATTAATTTAGTGTAACATTGTTATTTTTTTTATGTATCATC-TTTTTTTATAATTTGCC-AATGTTCAATATCTTACCGAAAC-CAAAAGCAAGACATAAAATATAGACA-GTAATAAAA--
gi|3 : TTTTTTTT-GCCAAGATTAATGACCCGTTTA---TTGTCTATACATACACATACAT--AACATA------AACATAAC---------ATGACAATATAGAATT-TTGATATAT-TGAATTAACATGTATATCCCAACATCAT--TTAATA------ATCAT-CAT----ATTCA-TCATGCATTATTCATTAAGTCATCAGGTTTTATAAACATG--------CATCCATTTG--A-TTGTTTA---AATACATTCAT--T-TATACGTTCG------------------------------TTCGTTC----ATTCAATGATAGAAAC-TTATT-TTACGTTATA-AT-----ACTA-ATTAATAAACAATGATTATCATA---ATAGTA----AG--AGGTTATC-TGT--ACGAATTCAGTATAATATTATTA-T-----------------TTTCTTTATAATTTGCC-AATGTTCAATATCTTACAGAAACGAATAAGC-ATACATAAGATATatgcagttttgtacgaatg
gi|4 : GCATAAC---------ATGACAATATAGAATT-TTGATATAT-TGTATTAACATGTATTTCCCAACATCAT--TTAATA------ATCAT---TC--TATTCA-TCATGCATTATTCATTAAGTCATCAAGTTTTATAACTATC--------CATTCATTTG--A-TTGTTTA---ATTACACTGAT--T-TAAAT-TTCGTT----CGTTC----------G--------TTCGTTC----ATTCAATGATAGAAAC-TGTTT-TTACGTTATA-AT-----GATA-ATCAATAAATAACGATTATCATA---ATAGTA----AG--AGGCTATC-TGT--ATGAATTCAGTATAATGTTATTA-TTCTTTTATATATCATCATTCCTTTATAATTTGCC-AATGTTCAATATCTTACTGAAACGAAAAAGCAAGACATATGATATGAACA-
gi|5 : TTTTTTTTAACTAAGATTAATGACCCGTTAC---TTGTTTATACCTGCACATACAT--AGCACA------AGCATAAC---------ATGACAATATAGAATT-TTGATATAT-TGAATTAACATGTAAATCCGAACATCAT--TTAATT------TTCAT-CAT----ATTCA-TCATGTATTATTCATTAAGTCACCAAGTTTTATAACCATT--------CATTCATTTG--A-TTGTTTA---ATTACACTCAT--T-TATACGTTCG------------------------------TTCGTTCATTTATTCAATGATAGAAAC-----T-TTACGTTATC-AA-----AATA-ATTAATAAATAATGATTTTCATA---ATAGTA----AG--AAGATATA-TGT--ATGTTTTCAGTATACTATTGTTA-TTCTTTTATATAACATCATTTCTTCATAATCTGCC-AATGTTcgctaaaacgaa
gi|6 : TCATTC----TTTCAACATTA---AT-TTATTATCAAGTTGTC-ATTCTGGAATACATAAATACACATTGATGATAATACTAATAGTATAATAGTAAGATTATCCTCTCGATAAATACATTTTAATAT----A-TT---TTATATAACACCACATATTTAGAATTTGCC-ACGGTTCCATATCTTGCCGAATCG-GAAAGTAAGCCATATAA-ACTGATA-GTAATAACG--GA---------A
gi|7 : ttcgtttcaggttctatcttttaaacttcttttttggtcatcatcgatgatcGTA----AG--CGACTATT-TGT--ATGAAAGAAGTTTAATTTTATTA-TTCTTTTATATATCATCATTCCTTTATAATTTGCC-AATGTTCAATATCTTACCGAAACGAAAAAGCAAGACATATGATATGGACACGC--TAAAA--CG---------AAGTA-CATGT
gi|8 : ATGACCCATATA---TT----ATAAATGCACATGCAC--AA---AGTTTTTAATATAAC---------A---CAACTTTGCATT-TCGATATCT-TGAATTAACATGTATGCTTC--CATCA------------------AT-TATTTTTATCCATTCATTCATTCT--ATGAACTCATTAA---TTGC-----TT--------CATTCATTTG--ATTTGTTTACTCATTG-ATTCAT--T-TATTCATT-GCTAATAC-TTCTTTATTCTTCG--------Tacaagattcgatatttagatttccgctttttctttggttataaagaaaggatgtaatttataactgttttattttctttgttcagcccgatttatgttatttgatcttttaaaga
gi|9 : GTTTA---ATTACACTCATATT-TATACGTTCGTT----TGTTC----------------------ATTC----ATTCAATGATAGAAAC-TTATT-TTACGTTATTTAT-----AATG-ATTAATAAATAATGATTATCATA---ATAGTA----AG--AGGATATC-TGT--ATGAAATCAGT
Alignments
lowQualScore : 111 111111 111111111 11111111 111 22222222 44444444444444444444 11111 11111111 11 2222222222222 1
lowQualScore : 000 66 11 444444 777777777 5 5 1 0 66 99999999 4 222 5 33 0 33 1 66666666 77 5 66 66 5 22222222222222222222 4 5 5 66 22222 5 0 888 88888888 4 66 5 2 4 0 4 11 7 1 3333333333333 0 2 7
lowQualScore : ... .. .. ...... ......... . . . . .. ........ . ... . .. . .. . ........ .. . .. .. . .................... . . . .. ..... . . ... ........ . .. . . . . . .. . . ............. . . .
lowQualScore : 000 99 66 444444 888888888 0 0 0 5 11 44444444 4 888 0 99 4 11 4 44444444 99 7 99 99 0 11111111111111111111 0 0 0 00 55555 0 9 888 11111111 4 11 5 9 0 9 0 11 6 0 7777777777777 0 5 3
consensus : TTTTTTTTTAGCCAAGATTAATGACCCGTTTA---TTGTTTATACATACACATACAT--AACACA------AGCATAAC---------ATGACAATATAGAATT-TTGATATAT-TGAATTAACATGTATNTCCCAACATCAT--TTAATA------ATCAT-CATCATTATTCA-TCATGCATTATTCATTAAGTCATCAAGTTTTATAACCATT--------CATTCATTTG--A-TTGTTTAATTAC--ACTCAT--T-TATACGTT----------------CGTTCGTTCGTTCGTTCATTCAATGATAGAAAC-TTATT-TTACGTTATN-AT-----AATA-ATTAATAAATA---ATGAT--------TATCATAATAGTAAGAGGCTATC-TGT--ATGAATTCAGTATAATATTATTATTCTTTT-ATATATCATCATTTCTTTATAATTTGCC-AATGTTCAATATCTTACCGAAACGAAAAAGCAAGACATAAGATATGGACAGTANTAAAA--GA---------AAATA-AATGTTTGAACCAATG
Reference ( family-548 ) : TTTTTTTTTAGCCAAGATTAATGACCCGTTTA---TTGTTTATACATACACATACAT--AACACA------AGCATAAC---------ATGACAATATAGAATT-TTGATATAT-TGAATTAACATGTATNTCCCAACATCAT--TTAATA------ATCAT-CATCATTATTCA-TCATGCATTATTCATTAAGTCATCAAGTTTTATAACCATT--------CATTCATTTG--A-TTGTTTAATTAC--ACTCAT--T-TATACGTT----------------CGTTCGTTCGTTCGTTCATTCAATGATAGAAAC-TTATT-TTACGTTATN-AT-----AATA-ATTAATAAATA---ATGAT--------TATCATAATAGTAAGAGGCTATC-TGT--ATGAATTCAGTATAATATTATTATTCTTTT-ATATATCATCATTTCTTTATAATTTGCC-AATGTTCAATATCTTACCGAAACGAAAAAGCAAGACATAAGATATGGACAGTANTAAAA--GA---------AAATA-AATGTTTGAACCAATG
gi|1 : TTCTTTTTGAGCCAAGACTAATGACCCGTTTA---TTGTTTTTACATACACATACGT--AACACA------AGCATAAC---------ATGACAATATAGAATT-TTGATATAT-TGAATTAACATGTATATCCCAACATCAT--TTAATA------ATCAT-CATCATTATTCA-TCATGAATTATTCATTAAGTCATCAAGTTTTATAACCATT--------CATTCATTTG--A-TTGTTTAATTAC--ACTCAT--T-TATACGTTCGTTCGTTCTTTCGTTCGTTCGTTTTTTCGTTCATTCAATGATAGAGAC-TTATT-TTACGTTATA-TC-----AATA-TTTAATAAATG---ATGAT--------TATCATAATAGTAAAAGACTATC-TGT--GTGACTTCAGTAAAATAATATTATTCTTTT-ATATATCATCATTTCTTTATAATTTGCC-AATGTTCAATATCTTACCGAAACGAAAAAGCAAGACATAAGATATGGACAGTAATGAAA--GA---------AAATA-AATGTTTGAACCAATG
gi|10 : TTTTTTTAGCCATGATTAATGACCCATTTGTTTTTATTCATACATACATGTATATGCAATTTG------AGCATAACATGACAACGATGACAACACAGAATTATTAATACATGCAAACAAACATA-ACATGACAACAGAATTATTAATA--------CATACAT
gi|11 : tcaCTTTA-ATTTGTTATAATT-CTTTATAATTTGCC-ATTGATCAGTATCTTGCCTGATCG-AAAAGCAAGACATAAGTTAAAGACAGAACTAAAG--GA---------GATTGTAAT-TTTGAACCA
gi|12 : cagataaaatagcaagattaatgaCAT--AACACA------AACATAAC---------ATTACAATATAGACTT-TTTATATAT-TGAATTAACATATATTTCCCATCATCAT--TTAATA------ATCAT-CAT-ATTA---A-TCATCCATTATTCATTAAGT
gi|13 : cgcttagaattttcTTT--TATATTATCATTTTTCAATA--TTGCTTAATGTTCAATATCTTACCGAAAC-AAGAAGCATATCACCAGTTATAAACATTGGTAAAATCAATGCAATTTTAAATA-AATGTTTA---CAATGttta
gi|14 : tttgCATCAT--TTAATAATCAACATCAT-CATCATTTTTCA-TCAT-CAGTA-TCA--GAGTCATCA--TTGTCGCACCATTA-------CATTCAATAGATA-TTGGCTACATGC--ACTCAT--TCTATATATT----------------TTTTC
gi|15 : GAAAC-TTATT-TTACGTTATA-AT-----AATG-ATTAATAAATA---ACGAT--------TATCATAATAGTAAGAGACTATC-TGT--ATGAATTCAGT---ATATTATTATTACTTT-ATATATCAACTTTTCTTTA
gi|16 : TTCTTTATAATTTGCC-AATGTTCATTGTCTTACCGAAACG-AAAAGCAAGACATAAAATATGAACAATATTAAAA--GA---------AAATa
gi|17 : TTATTTTTAGCCAAGGTTAATGACCTGTTTA---TTGTTTATACATACACATATAT--AACACA------AGCATAAC---------GTGACAATAgcaattaatggaact
gi|2 : TTTTTTAGCCATGATTAATGATCCGCTTA---TTGTTTATACATACACA-----------CA------AACATAAC---------ATGACAATATAGAAGT-TTGATATAT-CGAATTAACATACATTTCCCATCATCAT--TTAAT---------CAT-CATCAT-ATTCA-TCATG-ATTACTCAATACTTCATTAAAATGTATAACCATTTATGCATTCATTCATTTT--A-TTGTTTAATTAC--AC-----------ACATT----------------CATTCGTTCGTTCATTCATTCATTGATGGAAACATTATT-TTATGTTGTT-AA-----AATA-AATAA-AAA-A---ATAAT--------TATCATAGTAGTAAGAGACTATC-TGT--ATTAATTTAGTGTAACATTGTTATTTTTTTTATGTATCATC-TTTTTTTATAATTTGCC-AATGTTCAATATCTTACCGAAAC-CAAAAGCAAGACATAAAATATAGACAGTAATAAAA--
gi|3 : TTTTTTTT-GCCAAGATTAATGACCCGTTTA---TTGTCTATACATACACATACAT--AACATA------AACATAAC---------ATGACAATATAGAATT-TTGATATAT-TGAATTAACATGTATATCCCAACATCAT--TTAATA------ATCAT-CA----TATTCA-TCATGCATTATTCATTAAGTCATCAGGTTTTATAAACATG--------CATCCATTTG--A-TTGTTTAAATAC--ATTCAT--T-TATA------------------------CGTTCGTTCGTTCATTCAATGATAGAAAC-TTATT-TTACGTTATA-AT-----ACTA-ATTAATAAACA---ATGAT--------TATCATAATAGTAAGAGGTTATC-TGT--ACGAATTCAGTATAATATTATTAT------------------TTTCTTTATAATTTGCC-AATGTTCAATATCTTACAGAAACGAATAAGC-ATACATAAGATATatgcagttttgtacgaatg
gi|4 : GCATAAC---------ATGACAATATAGAATT-TTGATATAT-TGTATTAACATGTATTTCCCAACATCAT--TTAATA------ATCAT---TC--TATTCA-TCATGCATTATTCATTAAGTCATCAAGTTTTATAACTATC--------CATTCATTTG--A-TTGTTTAATTAC--ACTGAT--T-TAAAT-TT----------------CGTTCGTTCGTTCGTTCATTCAATGATAGAAAC-TGTTT-TTACGTTATA-AT-----GATA-ATCAATAAATA---ACGAT--------TATCATAATAGTAAGAGGCTATC-TGT--ATGAATTCAGTATAATGTTATTATTCTTTT-ATATATCATCATTCCTTTATAATTTGCC-AATGTTCAATATCTTACTGAAACGAAAAAGCAAGACATATGATATGAACA-CGCTAAAAC-GA---------A
gi|5 : TTTTTTTTAACTAAGATTAATGACCCGTTAC---TTGTTTATACCTGCACATACAT--AGCACA------AGCATAAC---------ATGACAATATAGAATT-TTGATATAT-TGAATTAACATGTAAATCCGAACATCAT--TTAATT------TTCAT-CA----TATTCA-TCATGTATTATTCATTAAGTCACCAAGTTTTATAACCATT--------CATTCATTTG--A-TTGTTTAATTAC--ACTCAT--T-TATA--------------------CGTTCGTTCGTTCATTTATTCAATGATAGAAAC-----T-TTACGTTATC-AA-----AATA-ATTAATAAATA---ATGAT--------TTTCATAATAGTAAGAAGATATA-TGT--ATGTTTTCAGTATACTATTGTTATTCTTTT-ATATAACATCATTTCTTCATAATCTGCC-AATGTT
gi|6 : TCATTCTTTCAACATTA---AT-TTATTATCAAGTTGTC-ATTCTGGAATACATAAATACACATTGATGATAATACTAATAGTATAATAGTAAGA--TTATCCTCTCGATAAATACATTTTAATAT----ATT---TT-ATATAACACCACATATTTAGAATTTGCC-ACGGTTCCATATCTTGCCGAATCG-GAAAGTAAGCCATATAA-ACTGATAGTAATAACG--GA---------A
gi|7 : ttcgtttcaggttctatcttttaaacttcttttttggtcatcatcgatgatcGTAAGCGACTATT-TGT--ATGAAAGAAGTTTAATTTTATTATTCTTTT-ATATATCATCATTCCTTTATAATTTGCC-AATGTTCAATATCTTACCGAAACGAAAAAGCAAGACATATGATATGGACA-CGCTAAAA--CG---------AAGTA-CATGT
gi|8 : ATGACCCATATA---TT----ATAAATGCACATGCAC--AA---AGTTTTTAATATAAC---------A---CAACTTTGCATT-TCGATATCT-TGAATTAACATGTATGCTTC--CATCA------------------AT-TATTTTTATCCATTCATTCATTCT--ATGAACTCATTAA---TTGC-----TT--------CATTCATTTG--ATTTGTTTACTCATTGATTCAT--T-TATTCATT----------------acaagattcgatatttagatttccgctttttctttggttataaagaaaggatgtaatttataactgttttattttctttgttcagcccgatttatgttatttgatcttttaaaga
gi|9 : GTTTAATTAC--ACTCATATT-TATACGTT----------------CGTTTGTTCATTC----ATTCAATGATAGAAAC-TTATT-TTACGTTATTTAT-----AATG-ATTAATAAATA---ATGAT--------TATCATAATAGTAAGAGGATATC-TGT--ATGAAATCAGTgctaatacttctttattcttcgt
Alignments
lowQualScore : 111 111111 111111111 11111111 111 22222222 44444444444444444444 11111 11111111 11 2222222222222 1
lowQualScore : 000 66 11 444444 777777777 5 5 1 0 66 99999999 4 222 5 33 0 33 1 66666666 77 5 66 66 5 22222222222222222222 4 5 5 66 22222 5 0 888 88888888 4 66 5 2 4 0 4 11 7 1 3333333333333 0 2 7
lowQualScore : ... .. .. ...... ......... . . . . .. ........ . ... . .. . .. . ........ .. . .. .. . .................... . . . .. ..... . . ... ........ . .. . . . . . .. . . ............. . . .
lowQualScore : 000 99 66 444444 888888888 0 0 0 5 11 44444444 4 888 0 99 4 11 4 44444444 99 7 99 99 0 11111111111111111111 0 0 0 00 55555 0 9 888 11111111 4 11 5 9 0 9 0 11 6 0 7777777777777 0 5 3
consensus : TTTTTTTTTAGCCAAGATTAATGACCCGTTTA---TTGTTTATACATACACATACAT--AACACA------AGCATAAC---------ATGACAATATAGAATT-TTGATATAT-TGAATTAACATGTATNTCCCAACATCAT--TTAATA------ATCAT-CATCATTATTCA-TCATGCATTATTCATTAAGTCATCAAGTTTTATAACCATT--------CATTCATTTG--A-TTGTTTAATTAC--ACTCAT--T-TATACGTT----------------CGTTCGTTCGTTCGTTCATTCAATGATAGAAAC-TTATT-TTACGTTATN-AT-----AATA-ATTAATAAATA---ATGAT--------TATCATAATAGTAAGAGGCTATC-TGT--ATGAATTCAGTATAATATTATTATTCTTTT-ATATATCATCATTTCTTTATAATTTGCC-AATGTTCAATATCTTACCGAAACGAAAAAGCAAGACATAAGATATGGACAGTANTAAAA--GA---------AAATA-AATGTTTGAACCAATG
Reference ( family-548 ) : TTTTTTTTTAGCCAAGATTAATGACCCGTTTA---TTGTTTATACATACACATACAT--AACACA------AGCATAAC---------ATGACAATATAGAATT-TTGATATAT-TGAATTAACATGTATNTCCCAACATCAT--TTAATA------ATCAT-CATCATTATTCA-TCATGCATTATTCATTAAGTCATCAAGTTTTATAACCATT--------CATTCATTTG--A-TTGTTTAATTAC--ACTCAT--T-TATACGTT----------------CGTTCGTTCGTTCGTTCATTCAATGATAGAAAC-TTATT-TTACGTTATN-AT-----AATA-ATTAATAAATA---ATGAT--------TATCATAATAGTAAGAGGCTATC-TGT--ATGAATTCAGTATAATATTATTATTCTTTT-ATATATCATCATTTCTTTATAATTTGCC-AATGTTCAATATCTTACCGAAACGAAAAAGCAAGACATAAGATATGGACAGTANTAAAA--GA---------AAATA-AATGTTTGAACCAATG
gi|1 : TTCTTTTTGAGCCAAGACTAATGACCCGTTTA---TTGTTTTTACATACACATACGT--AACACA------AGCATAAC---------ATGACAATATAGAATT-TTGATATAT-TGAATTAACATGTATATCCCAACATCAT--TTAATA------ATCAT-CATCATTATTCA-TCATGAATTATTCATTAAGTCATCAAGTTTTATAACCATT--------CATTCATTTG--A-TTGTTTAATTAC--ACTCAT--T-TATACGTTCGTTCGTTCTTTCGTTCGTTCGTTTTTTCGTTCATTCAATGATAGAGAC-TTATT-TTACGTTATA-TC-----AATA-TTTAATAAATG---ATGAT--------TATCATAATAGTAAAAGACTATC-TGT--GTGACTTCAGTAAAATAATATTATTCTTTT-ATATATCATCATTTCTTTATAATTTGCC-AATGTTCAATATCTTACCGAAACGAAAAAGCAAGACATAAGATATGGACAGTAATGAAA--GA---------AAATA-AATGTTTGAACCAATG
gi|10 : TTTTTTTAGCCATGATTAATGACCCATTTGTTTTTATTCATACATACATGTATATGCAATTTG------AGCATAACATGACAACGATGACAACACAGAATTATTAATACATGCAAACAAACATA-ACATGACAACAGAATTATTAATA--------CATACAT
gi|11 : tcaCTTTA-ATTTGTTATAATT-CTTTATAATTTGCC-ATTGATCAGTATCTTGCCTGATCG-AAAAGCAAGACATAAGTTAAAGACAGAACTAAAG--GA---------GATTGTAAT-TTTGAACCA
gi|12 : cagataaaatagcaagattaatgaCAT--AACACA------AACATAAC---------ATTACAATATAGACTT-TTTATATAT-TGAATTAACATATATTTCCCATCATCAT--TTAATA------ATCAT-CAT-ATTA---A-TCATCCATTATTCATTAAGT
gi|13 : cgcttagaattttcTTT--TATATTATCATTTTTCAATA--TTGCTTAATGTTCAATATCTTACCGAAAC-AAGAAGCATATCACCAGTTATAAACATTGGTAAAATCAATGCAATTTTAAATA-AATGTTTA---CAATGttta
gi|14 : tttgCATCAT--TTAATAATCAACATCAT-CATCATTTTTCA-TCAT-CAGTA-TCA--GAGTCATCA--TTGTCGCACCATTA-------CATTCAATAGATA-TTGGCTACATGC--ACTCAT--TCTATATATT----------------TTTTC
gi|15 : GAAAC-TTATT-TTACGTTATA-AT-----AATG-ATTAATAAATA---ACGAT--------TATCATAATAGTAAGAGACTATC-TGT--ATGAATTCAGT---ATATTATTATTACTTT-ATATATCAACTTTTCTTTA
gi|16 : TTCTTTATAATTTGCC-AATGTTCATTGTCTTACCGAAACG-AAAAGCAAGACATAAAATATGAACAATATTAAAA--GA---------AAATa
gi|17 : TTATTTTTAGCCAAGGTTAATGACCTGTTTA---TTGTTTATACATACACATATAT--AACACA------AGCATAAC---------GTGACAATAgcaattaatggaact
gi|2 : TTTTTTAGCCATGATTAATGATCCGCTTA---TTGTTTATACATACACA-----------CA------AACATAAC---------ATGACAATATAGAAGT-TTGATATAT-CGAATTAACATACATTTCCCATCATCAT--TTAAT---------CAT-CATCAT-ATTCA-TCATG-ATTACTCAATACTTCATTAAAATGTATAACCATTTATGCATTCATTCATTTT--A-TTGTTTAATTAC--AC-----------ACATT----------------CATTCGTTCGTTCATTCATTCATTGATGGAAACATTATT-TTATGTTGTT-AA-----AATA-AATAA-AAA-A---ATAAT--------TATCATAGTAGTAAGAGACTATC-TGT--ATTAATTTAGTGTAACATTGTTATTTTTTTTATGTATCATC-TTTTTTTATAATTTGCC-AATGTTCAATATCTTACCGAAAC-CAAAAGCAAGACATAAAATATAGACAGTAATAAAA--
gi|3 : TTTTTTTT-GCCAAGATTAATGACCCGTTTA---TTGTCTATACATACACATACAT--AACATA------AACATAAC---------ATGACAATATAGAATT-TTGATATAT-TGAATTAACATGTATATCCCAACATCAT--TTAATA------ATCAT-CA----TATTCA-TCATGCATTATTCATTAAGTCATCAGGTTTTATAAACATG--------CATCCATTTG--A-TTGTTTAAATAC--ATTCAT--T-TATA------------------------CGTTCGTTCGTTCATTCAATGATAGAAAC-TTATT-TTACGTTATA-AT-----ACTA-ATTAATAAACA---ATGAT--------TATCATAATAGTAAGAGGTTATC-TGT--ACGAATTCAGTATAATATTATTAT------------------TTTCTTTATAATTTGCC-AATGTTCAATATCTTACAGAAACGAATAAGC-ATACATAAGATATatgcagttttgtacgaatg
gi|4 : GCATAAC---------ATGACAATATAGAATT-TTGATATAT-TGTATTAACATGTATTTCCCAACATCAT--TTAATA------ATCAT---TC--TATTCA-TCATGCATTATTCATTAAGTCATCAAGTTTTATAACTATC--------CATTCATTTG--A-TTGTTTAATTAC--ACTGAT--T-TAAAT-TT----------------CGTTCGTTCGTTCGTTCATTCAATGATAGAAAC-TGTTT-TTACGTTATA-AT-----GATA-ATCAATAAATA---ACGAT--------TATCATAATAGTAAGAGGCTATC-TGT--ATGAATTCAGTATAATGTTATTATTCTTTT-ATATATCATCATTCCTTTATAATTTGCC-AATGTTCAATATCTTACTGAAACGAAAAAGCAAGACATATGATATGAACA-CGCTAAAAC-GA---------A
gi|5 : TTTTTTTTAACTAAGATTAATGACCCGTTAC---TTGTTTATACCTGCACATACAT--AGCACA------AGCATAAC---------ATGACAATATAGAATT-TTGATATAT-TGAATTAACATGTAAATCCGAACATCAT--TTAATT------TTCAT-CA----TATTCA-TCATGTATTATTCATTAAGTCACCAAGTTTTATAACCATT--------CATTCATTTG--A-TTGTTTAATTAC--ACTCAT--T-TATA--------------------CGTTCGTTCGTTCATTTATTCAATGATAGAAAC-----T-TTACGTTATC-AA-----AATA-ATTAATAAATA---ATGAT--------TTTCATAATAGTAAGAAGATATA-TGT--ATGTTTTCAGTATACTATTGTTATTCTTTT-ATATAACATCATTTCTTCATAATCTGCC-AATGTT
gi|6 : TCATTCTTTCAACATTA---AT-TTATTATCAAGTTGTC-ATTCTGGAATACATAAATACACATTGATGATAATACTAATAGTATAATAGTAAGA--TTATCCTCTCGATAAATACATTTTAATAT----ATT---TT-ATATAACACCACATATTTAGAATTTGCC-ACGGTTCCATATCTTGCCGAATCG-GAAAGTAAGCCATATAA-ACTGATAGTAATAACG--GA---------A
gi|7 : ttcgtttcaggttctatcttttaaacttcttttttggtcatcatcgatgatcGTAAGCGACTATT-TGT--ATGAAAGAAGTTTAATTTTATTATTCTTTT-ATATATCATCATTCCTTTATAATTTGCC-AATGTTCAATATCTTACCGAAACGAAAAAGCAAGACATATGATATGGACA-CGCTAAAA--CG---------AAGTA-CATGT
gi|8 : ATGACCCATATA---TT----ATAAATGCACATGCAC--AA---AGTTTTTAATATAAC---------A---CAACTTTGCATT-TCGATATCT-TGAATTAACATGTATGCTTC--CATCA------------------AT-TATTTTTATCCATTCATTCATTCT--ATGAACTCATTAA---TTGC-----TT--------CATTCATTTG--ATTTGTTTACTCATTGATTCAT--T-TATTCATT----------------acaagattcgatatttagatttccgctttttctttggttataaagaaaggatgtaatttataactgttttattttctttgttcagcccgatttatgttatttgatcttttaaaga
gi|9 : GTTTAATTAC--ACTCATATT-TATACGTT----------------CGTTTGTTCATTC----ATTCAATGATAGAAAC-TTATT-TTACGTTATTTAT-----AATG-ATTAATAAATA---ATGAT--------TATCATAATAGTAAGAGGATATC-TGT--ATGAAATCAGTgctaatacttctttattcttcgt
blockSeqs : TTT GC TT GTTTTT ATGACAACG A G A TA AATCAACA A TCA T CC AA C TATGCATT AT T TG AT C TATT A A A TT TCTGG C TTG AATACTAA C CG G C T T GA G C TCAATGCAATTTT T G A
blockSeqs : . . CA . . . . T . AA . TCA . GC GG A A . . . . . CATT G . . A . . . . . . A A . . GA T G CGA . G .
blockSeqs : . . CA . . . . T . AA . TTT . GC AG A . . . . . . CATT G . . T . . . . . . A T . . GA A T GA . .
blockSeqs : . . CA . . . . A . AA . TA . GT AG A . . . . . . CGTT A . . A . . . . . . A C . . G G A GA
blockSeqs : . . CA . . . . T . TT . TC . TC A A . . . . . . TTT A . . A . . . . . . T C . . A G C GA
blockSeqs : . . . . . . . A . A . . . C . . . . . . . . . . . . C . . . . . . T C . . G . A CG
blockSeqs : . . . . . . G . . . . . G . . . . . . C . . . . . . . . . . C . C
blockSeqs : . . . . . . . . . G
blockSeqs : . .
blockSeqCons : CATT**************** G*
originalCons : TTTTTTTTTAGCCAAGATTAATGACCCGTTTA---TTGTTTATACATACACATACAT--AACACA------AGCATAAC---------ATGACAATATAGAATT-TTGATATAT-TGAATTAACATGTATNTCCCAACATCAT--TTAATA------ATCAT-CATCATTATTCA-TCATGCATTATTCATTAAGTCATCAAGTTTTATAACCATT--------CATTCATTTG--A-TTGTTTAATTAC--ACTCAT--T-TATACGTT----------------CGTTCGTTCGTTCGTTCATTCAATGATAGAAAC-TTATT-TTACGTTATN-AT-----AATA-ATTAATAAATA---ATGAT--------TATCATAATAGTAAGAGGCTATC-TGT--ATGAATTCAGTATAATATTATTATTCTTTT-ATATATCATCATTTCTTTATAATTTGCC-AATGTTCAATATCTTACCGAAACGAAAAAGCAAGACATAAGATATGGACAGTANTAAAA--GA---------AAATA-AATGTTTGAACCAATG
finalCons : TTTTTTTTTAGCCAAGATTAATGACCCGTTTA---TTGTTTATACATACACATACAT--AACACA------AGCATAAC---------ATGACAATATAGAATT-TTGATATAT-TGAATTAACATGTATNTCCCAACATCAT--TTAATA------ATCAT-CATCATTATTCA-TCATGCATTATTCATTAAGTCATCAAGTTTTATAACCATT--------CATTCATTTG--A-TTGTTTAATTAC--ACTCAT--T-TATACATT----------------CGTTCGTTCGTTCGTTCATTCAATGATAGAAAC-TTATT-TTACGTTATN-AT-----AATA-ATTAATAAATA---ATGAT--------TATCATAATAGTAAGAGGCTATC-TGT--ATGAATTCAGTATAATATTATTATTCTTTT-ATATATCATCATTTCTTTATAATTTGCC-AATGTTCAATATCTTACCGAAACG-AAAAGCAAGACATAAGATATGGACAGTANTAAAA--GA---------AAATA-AATGTTTGAACCAATG
Alignments
lowQualScore : 111 111111 111111111 11111111 111 22222222 11 222222222222 1111 11111 11111111 1 2222222222222 1
lowQualScore : 000 66 11 444444 777777777 5 5 1 0 66 99999999 4 222 5 33 0 33 1 66666666 77 5 66 66 5 77 999999999999 2222 5 5 66 22222 5 0 888 88888888 4 66 5 2 4 0 4 3 4 7 1 3333333333333 0 2 7
lowQualScore : ... .. .. ...... ......... . . . . .. ........ . ... . .. . .. . ........ .. . .. .. . .. ............ .... . . .. ..... . . ... ........ . .. . . . . . . . . . ............. . . .
lowQualScore : 000 99 66 444444 888888888 0 0 0 5 11 44444444 4 888 0 99 4 11 4 44444444 99 7 99 99 0 66 333333333333 1111 0 0 00 55555 0 9 888 11111111 4 11 5 9 0 9 0 3 4 6 0 7777777777777 0 5 3
consensus : TTTTTTTTTAGCCAAGATTAATGACCCGTTTA---TTGTTTATACATACACATACAT--AACACA------AGCATAAC---------ATGACAATATAGAATT-TTGATATAT-TGAATTAACATGTATNTCCCAACATCAT--TTAATA------ATCAT-CATCATTATTCA-TCATGCATTATTCATTAAGTCATCAAGTTTTATAACCATT--------CATTCATTTG--A-TTGTTTAATTAC--ACTCAT--T-TATACATTCGTTC------------GTTCGTT----CGTTCATTCAATGATAGAAAC-TTATT-TTACGTTATN-AT-----AATA-ATTAATAAATA---ATGAT--------TATCATAATAGTAAGAGGCTATC-TGT--ATGAATTCAGTATAATATTATTATTCTTTT-ATATATCATCATTTCTTTATAATTTGCC-AATGTTCAATATCTTACCGAAACG-AA-AAGCAAGACATAAGATATGGACAGTANTAAAA--GA---------AAATA-AATGTTTGAACCAATG
Reference ( family-548 ) : TTTTTTTTTAGCCAAGATTAATGACCCGTTTA---TTGTTTATACATACACATACAT--AACACA------AGCATAAC---------ATGACAATATAGAATT-TTGATATAT-TGAATTAACATGTATNTCCCAACATCAT--TTAATA------ATCAT-CATCATTATTCA-TCATGCATTATTCATTAAGTCATCAAGTTTTATAACCATT--------CATTCATTTG--A-TTGTTTAATTAC--ACTCAT--T-TATACATTCGTTC------------GTTCGTT----CGTTCATTCAATGATAGAAAC-TTATT-TTACGTTATN-AT-----AATA-ATTAATAAATA---ATGAT--------TATCATAATAGTAAGAGGCTATC-TGT--ATGAATTCAGTATAATATTATTATTCTTTT-ATATATCATCATTTCTTTATAATTTGCC-AATGTTCAATATCTTACCGAAACG-AA-AAGCAAGACATAAGATATGGACAGTANTAAAA--GA---------AAATA-AATGTTTGAACCAATG
gi|1 : TTCTTTTTGAGCCAAGACTAATGACCCGTTTA---TTGTTTTTACATACACATACGT--AACACA------AGCATAAC---------ATGACAATATAGAATT-TTGATATAT-TGAATTAACATGTATATCCCAACATCAT--TTAATA------ATCAT-CATCATTATTCA-TCATGAATTATTCATTAAGTCATCAAGTTTTATAACCATT--------CATTCATTTG--A-TTGTTTAATTAC--ACTCAT--T-TATACGTTCGTTCGTTCTTTCGTTCGTTCGTTTTTTCGTTCATTCAATGATAGAGAC-TTATT-TTACGTTATA-TC-----AATA-TTTAATAAATG---ATGAT--------TATCATAATAGTAAAAGACTATC-TGT--GTGACTTCAGTAAAATAATATTATTCTTTT-ATATATCATCATTTCTTTATAATTTGCC-AATGTTCAATATCTTACCGAAACGAAA-AAGCAAGACATAAGATATGGACAGTAATGAAA--GA---------AAATA-AATGTTTGAACCAATG
gi|10 : TTTTTTTAGCCATGATTAATGACCCATTTGTTTTTATTCATACATACATGTATATGCAATTTG------AGCATAACATGACAACGATGACAACACAGAATTATTAATACATGCAAACAAACATA-ACATGACAACAGAATTATTAATA--------CATACAT
gi|11 : tcaCTTTA-ATTTGTTATAATT-CTTTATAATTTGCC-ATTGATCAGTATCTTGCCTGATCG-AA-AAGCAAGACATAAGTTAAAGACAGAACTAAAG--GA---------GATTGTAAT-TTTGAACCA
gi|12 : cagataaaatagcaagattaatgaCAT--AACACA------AACATAAC---------ATTACAATATAGACTT-TTTATATAT-TGAATTAACATATATTTCCCATCATCAT--TTAATA------ATCAT-CAT-ATTA---A-TCATCCATTATTCATTAAGT
gi|13 : cgcttagaattttcTTT--TATATTATCATTTTTCAATA--TTGCTTAATGTTCAATATCTTACCGAAACA-AG-AAGCATATCACCAGTTATAAACATTGGTAAAATCAATGCAATTTTAAATA-AATGTTTA---CAATGttta
gi|14 : tttgCATCAT--TTAATAATCAACATCAT-CATCATTTTTCA-TCAT-CAGTA-TCA--GAGTCATCA--TTGTCGCACCATTA-------CATTCAATAGATA-TTGGCTACATGC--ACTCAT--TCTATATATTTTTTC------------
gi|15 : GAAAC-TTATT-TTACGTTATA-AT-----AATG-ATTAATAAATA---ACGAT--------TATCATAATAGTAAGAGACTATC-TGT--ATGAATTCAGT---ATATTATTATTACTTT-ATATATCAACTTTTCTTTA
gi|16 : TTCTTTATAATTTGCC-AATGTTCATTGTCTTACCGAAACG-AA-AAGCAAGACATAAAATATGAACAATATTAAAA--GA---------AAATa
gi|17 : TTATTTTTAGCCAAGGTTAATGACCTGTTTA---TTGTTTATACATACACATATAT--AACACA------AGCATAAC---------GTGACAATAgcaattaatggaact
gi|2 : TTTTTTAGCCATGATTAATGATCCGCTTA---TTGTTTATACATACACA-----------CA------AACATAAC---------ATGACAATATAGAAGT-TTGATATAT-CGAATTAACATACATTTCCCATCATCAT--TTAAT---------CAT-CATCAT-ATTCA-TCATG-ATTACTCAATACTTCATTAAAATGTATAACCATTTATGCATTCATTCATTTT--A-TTGTTTAATTAC--AC-----------ACATTCATTC------------GTTCGTT----CATTCATTCATTGATGGAAACATTATT-TTATGTTGTT-AA-----AATA-AATAA-AAA-A---ATAAT--------TATCATAGTAGTAAGAGACTATC-TGT--ATTAATTTAGTGTAACATTGTTATTTTTTTTATGTATCATC-TTTTTTTATAATTTGCC-AATGTTCAATATCTTACCGAAACC-AA-AAGCAAGACATAAAATATAGACAGTAATAAAA--
gi|3 : TTTTTTTT-GCCAAGATTAATGACCCGTTTA---TTGTCTATACATACACATACAT--AACATA------AACATAAC---------ATGACAATATAGAATT-TTGATATAT-TGAATTAACATGTATATCCCAACATCAT--TTAATA------ATCAT-CA----TATTCA-TCATGCATTATTCATTAAGTCATCAGGTTTTATAAACATG--------CATCCATTTG--A-TTGTTTAAATAC--ATTCAT--T-TATA--------C------------GTTCGTT----CGTTCATTCAATGATAGAAAC-TTATT-TTACGTTATA-AT-----ACTA-ATTAATAAACA---ATGAT--------TATCATAATAGTAAGAGGTTATC-TGT--ACGAATTCAGTATAATATTATTAT------------------TTTCTTTATAATTTGCC-AATGTTCAATATCTTACAGAAACG-AATAAGC-ATACATAAGATATatgcagttttgtacgaatg
gi|4 : GCATAAC---------ATGACAATATAGAATT-TTGATATAT-TGTATTAACATGTATTTCCCAACATCAT--TTAATA------ATCAT---TC--TATTCA-TCATGCATTATTCATTAAGTCATCAAGTTTTATAACTATC--------CATTCATTTG--A-TTGTTTAATTAC--ACTGAT--T-TAAAT-TTCGTTC------------GTTCGTT----CGTTCATTCAATGATAGAAAC-TGTTT-TTACGTTATA-AT-----GATA-ATCAATAAATA---ACGAT--------TATCATAATAGTAAGAGGCTATC-TGT--ATGAATTCAGTATAATGTTATTATTCTTTT-ATATATCATCATTCCTTTATAATTTGCC-AATGTTCAATATCTTACTGAAACGAAA-AAGCAAGACATATGATATGAACA-CGCTAAAAC-GA---------A
gi|5 : TTTTTTTTAACTAAGATTAATGACCCGTTAC---TTGTTTATACCTGCACATACAT--AGCACA------AGCATAAC---------ATGACAATATAGAATT-TTGATATAT-TGAATTAACATGTAAATCCGAACATCAT--TTAATT------TTCAT-CA----TATTCA-TCATGTATTATTCATTAAGTCACCAAGTTTTATAACCATT--------CATTCATTTG--A-TTGTTTAATTAC--ACTCAT--T-TATA----CGTTC------------GTTCGTT----CATTTATTCAATGATAGAAAC-----T-TTACGTTATC-AA-----AATA-ATTAATAAATA---ATGAT--------TTTCATAATAGTAAGAAGATATA-TGT--ATGTTTTCAGTATACTATTGTTATTCTTTT-ATATAACATCATTTCTTCATAATCTGCC-AATGTT
gi|6 : T----CATTCTTTCAACATTA---AT-TTATTATCAAGTTGTC-ATTCTGGAATACATAAATACACATTGATGATAATACTAATAGTATAATAGTAAGA--TTATCCTCTCGATAAATACATTTTAATAT----ATT---TT-ATATAACACCACATATTTAGAATTTGCC-ACGGTTCCATATCTTGCCGAATCG-GA-AAGTAAGCCATATAA-ACTGATAGTAATAACG--GA---------A
gi|7 : ttcgtttcaggttctatcttttaaacttcttttttggtcatcatcgatgatcGTAAGCGACTATT-TGT--ATGAAAGAAGTTTAATTTTATTATTCTTTT-ATATATCATCATTCCTTTATAATTTGCC-AATGTTCAATATCTTACCGAAACGAAA-AAGCAAGACATATGATATGGACA-CGCTAAAA--CG---------AAGTA-CATGT
gi|8 : ATGACCCATATA---TT----ATAAATGCACATGCAC--AA---AGTTTTTAATATAAC---------A---CAACTTTGCATT-TCGATATCT-TGAATTAACATGTATGCTTC--CATCA------------------AT-TATTTTTATCCATTCATTCATTCT--ATGAACTCATTAA---TTGC-----TT--------CATTCATTTG--ATTTGTTTACTCATTGATTCAT--T-TATTCATTacaagattcgatatttagatttccgctttttctttggttataaagaaaggatgtaatttataactgttttattttctttgttcagcccgatttatgttatttgatcttttaaaga
gi|9 : GTTTAATTAC--ACTCATATT-TATAC----GTTC------------GTTTGTT----CATTCATTCAATGATAGAAAC-TTATT-TTACGTTATTTAT-----AATG-ATTAATAAATA---ATGAT--------TATCATAATAGTAAGAGGATATC-TGT--ATGAAATCAGTgctaatacttctttattcttcgt