lowQualScore : 1 1111111
lowQualScore : 1 6666 1 7 2 7777777777 2 2 3 2 1 9999999 1 3 555555 55555 2222 11 1 111 7777777777 1 1 33333 1 1 1 1 3 2 444444 1 1 111 5555555 11 6 1 11
lowQualScore : . .... . . . .......... . . . . . ....... . . ...... ..... .... .. . ... .......... . . ..... . . . . . . ...... . . ... ....... .. . . ..
lowQualScore : 5 3333 1 6 1 8888888888 1 0 2 0 0 3333333 0 0 888888 00000 1111 33 0 777 4444444444 0 9 33333 1 1 1 1 2 2 333333 1 1 999 1111111 44 2 1 55
consensus : GTTTGAAACGTTAGTTCGA-AACCTTTAT----AATTTG-GTTTTATATGT-AT------A--AGTT-AATTGTACGTGAT-TATTC-TT-TT----TT-AA-A-CA------C-----GAATCATT----TGTT--CAATCATTTG-TCATCCA---ATCATAAAGCAAAGTAGCTTGAG----------GAA-A-AT-----TATTTCACCATTTATC-TT-A-AATCAAACGGCAA-GTAGCCCAAGGAAAATTCT-TA------TATAT-CA-T---ATT------TA--TTAGTANT-TGTGTGCAT--AATCCGCTCGGTGCACGT
Reference ( gi|8 ) : GTTTGAAACGTTAGTTCGA-AACCTTTAT----AATTTG-GTTTTAAATGT-AT------A--AGTT-AATTGTACGTGAT-TATTC-TT-TT----TT-AA-A-CA------C-----GAATCATT----TGTT--CAATCATTTG-TCATCCA---ATCATAAAGCAAAGTAGCTTGAG----------GAA-A-AT-----TATTTCACCATTTATC-TT-A-AATCAAACGGCAA-GTAGTCCAAGGAAAATTCT-TA------TATAT-CA-T---ATT------TA--TTAGTAGT-TGTGTGCAT--AATCCGCTCGGTGCACGT
gi|7 : GTTTGAAACGTTAGTTCGA-AACCTTTAT----AATTTG-GTTTTATATGT-A-------A--AGTT-AATTGTACGTGAT-TAATC-TT-TT----TT-AA-A-CA------C-----GAATCATT----TGTT--CAATCATTTG-TCATCTA---ATCATAAAGCAAAGTAGCTTGAG----------GAA-A-AT-----TATTTCACCATTTATC-TT-T-AATCAAACGGCAA-GTAGTCCAAGGAAAATTCT-TA------TATAT-CA-T---ATT------TA--TTAGTAGT-TGTGTGCAT--AATCCGCTCGGTGCACGT
gi|3 : GTTTGAAACGTTAGTTCGA-AACCTTTAT----AATTTG-GTTTTATATGT-A-------A--AGTT-AATTGTACGTGAT-TATTC-TT-TTTTTTTT-AA-A-CA------C-----GAATCATT----TGTT--CAATCATTTG-TCATCTA---ATCATAAAGCAAAGTAGCTTGAG----------GAA-A-AT-----TATTTCACCATTTATC-TT-A-AATCAAACGGCAA-GTAGTCCAAGGAAAATTCA-TA------TATAT-CA-T---ATA------TA--TTAGTAGT-TGTGTGCAC--AATCCGCTCGGTGCACGTta
gi|4 : gGTTTGAAACGTTAGTTCGA-AACCTTTTTTT--AATTTG-GTTTTATATGT-AT------A--AGTT-AATTGTACGTGAT-TATTC-TT-TT----TT-AA-A-CA------C-----GAATCATT----TGTT--CAATCATTTG-TCATCCA---ATTATAAAGCAAAGTAGCTTGAG----------GAA-A-AT-----TATTTCACCATTTATC-TT-A-AATCAAACGGCAA-GTAGTCCAAGGAAAATTCT-TT------TATAT-CA-T---ATT------TA--TTAGTAGT-TGTGTGTAC--ACGCCGCTCGGTGCACGTtac
gi|1 : GTTTGAAACGTTAGTTCGA-AACCTTTTTTTTAAATTTG-GTTTTATATGT-AG------A--AGTT-AATTGTACGTGAT-TATTC-TT-TT-----T-AA-A-CA------C-----GAATCATT----TGTT--CAATCATTTG-TCATCCA---ATCATAAAGCAAAGTAGCTTGAG----------GAA-A-AT-----TATTTCACCATTTATC-TT-A-AATCAAACGGCAA-GTAGCCCAAGGAAAATTCA-TA------TATAT-CA-T---ATA------TA--TTAGTAGT-TGTGTGCAT--AATCTGCTCGGTGCACGTtac
gi|5 : gtttGTTTGAAACGTTAGT-CGA-AACCTTTAT----AATTTG-GTTTTATATGT-AG------A--AGTT-AATTGTACGTGAT-TACTC-TT-TT----T--AA-A-CA------C-----GAATCATT----TGTT--TAATCATTTG-TCATCCA---ATCATAAAGCAAAGTAGCTTGAG----------GAA-A--T-----TATTTCACCATTTATC-TT-A-AATCAAACGGCAA-GTAGCCCAAGGAAAATTCT-TA------TATAT-CA-T---ATG------TA--TTAGTATT-TATGTGCAC--AAACCGCTCGGTGCACGTtac
gi|2 : cgtttGTTTGAAATGTTAGTTCGA-AACCTTTTTCTTTAATTTA-GTTTTATATGT-AG------A--AGTT-AATTGTACGTGAT-TATTC-TT-TT-----T-AA-A-CA------C-----GAATCATT----TGTT--CAATCATTTG-TCATCCA---ATCATAAAGCAAAGTAGCTTGAG----------GAA-A-AT-----TATTTCACTATTTATC-TT-A-AATCAAACGGCAG-GTAGCCCAAGGAAAATTCA-TA------TATAT-CA-T---ATA------TA--TAAGTAGT-TGTGTGCAT--AATCCGCTCGGTGCACGTta
gi|37 : tttGTTTGAAACGTTAGTTCGA-AACCTTTAT----AATTTG-GTTTTATATGT-AG------A--AGTT-AATTGTACGTGAT-TATTC-TT-TT-----T-AA-A-CA------C-----GAAGCATT----TGTT--CAATCATTTG-TCATTCA---ATCAAAAAGCAAAGTAGCTTGAG----------GAA-A-AT-----TATTTCACCATTTATT-TTAA-AATCAAACGta
gi|33 : tttGTCCGAAACATTAGTTCGA-AACCTTTAT----AATTTG-GTTTTATATGT-AG------A--AGTTCAATCAT---TTGT-CATCC-AA-TC----AT-AA-AGCAAAGTAGCTTGAGGAA--AAT----TATT--TCACCATTTA-TC-TTGA---ATCAAACGGCAA--TAGCCCAAG----------GAA-A-AT-----TCTT
gi|32 : ttGTCCGAAACATTAGTTCGA-AACCTTTAT----AATTTG-GTTTTATATGT-AG------A--AGTTCAATCAT---TTGT-CATCC-AA-TC----AT-AA-AGCAAAGTAGCTTGAGGAA--AAT----TATT--TCACCATTTA-TC-TTGA---ATCAAACGGCAA--TAGCCCAAG----------GAA-A-AT-----TCTTatatatcatatgtattagtaattgtgtgcataatccgctaagtgcacgttac
gi|6 : ttTTCGAAACGTTAGTTTGA-AACCTTTGT----AATTTG-GTTTTATATGT-AA------T--AGTT-AATTGTACGTGAT-TCTTA-TT-TT-----T-AA-A-CA------C-----GAATCATT----TGTT--CAATCATTTG-TCATCCA---ATCATAAAGTAAAGTAGCTTGAG----------AAA-A-AA-----TATTTCACCATTTATC-TT-A-AATCAAACGACAT-GTAGCCAAAGGATAATTCT-TA------TATAT-TA-C---ATT------TA--TTAGTATT-TGTGTGCTT--AGTCCGCTCGGTGCACGTatatatcatatgtattagtaattgtgtgcataatccgctaagtgcacgttac
gi|11 : TTGAAACGTTAGTTCGA-AACCTTTAT----AATTTG-GTTTTATATGT-AT------A--AGTT-AATTGTACGTGAT-TATTC-TT-TT-----T-AA-A-CA------C-----GAATCATT----TGTT--CAATCATTTG-TCATCCA---ATTATAAAGCAAAGTAGCTTGAG----------GAA-A-AT-----TATTTCACCATTTATC-TT---AATCAAACGGCAA-GTAGTCCAAGGAAAATTCT-TA------TATAT-CA-T---ATG------TA--TTAGTAGT-TGTGTGCAT--AAACCGCTCGGTGCACGTtac
gi|10 : TGAAACGTTAGTTCGA-AACCTTTGT----AATTTG-GTTTTATATGT-AG------A--AATT-AATTGTACGTGAT-TATTA-TT-TT-----T-AA-A-CA------C-----GAATCATT----TATT--CAATCATTTG-TCATCCA---ATCATAAAGCAAAGTAGCTTGAG----------GAA-A-AT-----TATTTCAACATTTATC-TT-A-AATCAAACGGCAA-GTAGCCCAAGGAAAATTCT-TA------TATAT-CA-T---ATG------TA--TGAGTAAT-TGTGTGCAT--AATCCGCTCGGTGCACGTc
gi|20 : AAACGTTAGTTCGA-AACCTTTAT----AATTTG-GTTTTATATGT-A-------A--AGTT-AATTGTACGTGAT-TATTC-TT-TT----TT-AA-A-CA------C-----GAAT------------------CATTTG-TCATCTA---ATCATAAAGCAAAGTAGTTTGAG----------GAA-A-AT-----TATTTCACCATTTATC-TT-A-AATCAAACGGCAA-GTAGTCCAAGGAAAATTCA-TA------TATAT-CA-T---ATA------TA--TTAGTAGT-TGTGTGCAT--AAACCGCTCGGTGCACGTta
gi|13 : AAACGTTAGTTCGA-A-CTTTTAT----AATTTG-GTTTTATAGGT-AT------A--AGTT-AATTGTACGTGAT-TATTC-TT-TT----T--AA-A-CA------C-----GAATCATT----TGTT--CAATAGTTTG-TCATACA---ATCATAAAGCAAAGTAGCTTGAA-----------AA-A-AT-----TATTCCACTATTTATC-TT-A-AATCAAACGGCAA-GTAGCCCAATGAAAATTCT-TA------TATAT-TG-C---ATT------TA--TTAGTAAT-TGTGTGCAT--ACTCCGCTCGGTGCACGta
gi|12 : AAACGCTAGTTCGA-AATCTTTAT----AATTTG-GTTTTATATGT-AT------C--AGTT-AACTGTACGTGAG-TTTTC-TT-TT-----T-AA-A-CA------C-----GAATCATG----TGTC--CAATCATTTG-TCATTCA---ATCATAAAGCAAAGTAGCTTGAG----------AAA-A-AT-----TATTTCACTATTAATC-TT-A-AATCAAACGGCAA-GTAACTCAAGGAAAATTCT-TA------TATAT-TG-C---ATT------TA--TTACTAAG-TGTGTGCAT--AATTCGCTCGGTGCACctac
gi|9 : ACGTTAGTTTGA-AACCATTGT----AATTTG-GTTTTATGTGT-ATTAGTTAATTAGTT-AATTGTACGTGAT-T------T-TT----TT-AA-A-CA------C-----GAATCATT----TGTT--CAATCATTTG-TTATCCA---ATCATAAAGCAAAGTAGCTTGAG----------AAA-A-AT-----TATTTCACCATTTATC-TT-A-AATCAAACGGCAA-GTAGCCCAAGGAAAATTCT-TA------TATAT-CA-T---ATC------TA--TTAGTAAT-TGTGTGCAA--TATCCGCTCGGTGCACGTttta
gi|15 : CATTTGTTTGA-AACCTTTAT----AATTTG-GTTTTATATGT-AG------A--AGTT-AATTTTACGTGAT-TATTC-TT-TT----A--AA-A-CA------C-----GAATCATT----TGTT--CAATCATTTG-TCATCCA---ATCATAAAGCAAAGTAGCTTGAG----------GAA-A-AT-----TATTTCACCATTTCTC-TT-A-AATCAAACGGCAA-GTAGCCCAAGGAAAACTCT-TA------TATAT-CA-T---ATG------TA--TTAGTAAT-TGTGTGCAT--AATCCGCTCGGTGCACGTtac
gi|19 : CGTTAGTTTGA-ATACTTTGT----GATTTG-GTTTTATATTC-AT------T--AGTT-AATTTTACGTGAT-TATTC-TG-T--------AA-GGCA------C-----GAATCATG----TGTT--CAATCATTTC-TCATCCA---ATCATAAAGCAAAGATGCTTGGG----------AAA-A-AAA----TATTTCACCATTTATC-TT-G-AATCAAATGGCAA-ATAGCCAAAGGAAAAGTCA-TA------TGCAT-TG-C---ATG------TA--TTAGTATT-TGTGTACAT--AATCCGCTTGGTGt
gi|38 : TTTGTTTGATAACCTGTAT----TGCTTGTATGTTA---GT-AT------T--AGCT-GATGGTGCATGGT-T-TTC-TT-TG----TA-AA-A-CA------A-----TAACGATT----AACT--CA-TTGTTTA-TAATCCG---ATCACGAAACAAAGTATC-TAAG----------GGA-A-AT-----GATTTCACTATCTATA-TT-AGAATCAACCGa
gi|39 : TAGTTTGA-AACCTTAGT----AGTTTG-GTTTTGTATGT-AT------T--AATT-AATTTTACGCGAT-T---C-TTATT----TT-AG-A-CA------C-----GAATCATTAAATTTTTAACAATCGTTTG-TCATCCA---ATCACAAAGCAGAGTAGCTTGAG----------AAA-A-A------TATTTCA
gi|16 : AGTTCGA-AACCTTCAT----AATTTG-GTTTAATATGT-AT------A--AGTT-AATTGTACGTGAT-TATTC-TT-TT----A--AA-A-CA------C-----GAATCAAT----TGTT--CAATCGTTTG-TCATCCA---ATCATAAAGCAAAGTAGCTTGCG----------AAA-A-AT-----TATTTCACCATTTATC-TT-A-AATCAAACGGCAA-GTAGCCCAAGGAAAATTCT-AA------TATAT-TA-C---ATT------TA--ATATTATC-AGTGTGCAT--AATCCGCTCGGTGCACGT
gi|17 : AGTTTGA-AACCTTTGT----AATTTG-GTTTTATATGT-AT------T--AGTT-AATTGTACGTGAT-TCTTC-TT-TT-----T-AA-A-CA------C-----GAATCATT----TGTT--CAATCAATTG-TCATCCA---ATAATAAAGCAAAGTAGTTTGAG----------AAA-A-AT-----TATTTCACTA-TTATC-TT-A-AATCAAACGGAAA-GTAGCCCAAGGGAAATTCT-TA------TATAC-AA-T---ATT------TA--TTAGTATG-TGTGTGAAC--AATCCGTTCGGTGCACGTta
gi|18 : TCGA-AACCTTTAT----AATTTG-GTTTTATATGT-AT------A--GGTT-AATTGTACATGAT-TATTC-TT-TT-----T-AA-A-CA------C-----GAATCATT----TGTT--CAATCATTTG-TCATCCA---ATCATAAAGCAAAGTAGCTTGAG----------AAA-A-AC-----TATTTCACCATTTATC-TT-A-AATCAAACGGCAA-GTAGCCCAAGGAAAATTCT-TA------TATAT-CA-T---ATT------TA--TTAGTATT-TGTGTGCAT--AATCCGCTCGGTGCACGTtac
gi|21 : TCGA-A-CTTTTAT----AATTTG-GTTTTATATGT-AT------A--AGTT-AATTGTACGTGAT-TATTC-TT-TT----T--AA-A-CA------C-----GAATCATT----TGTT--CAATCGTTTG-TCATACA---ATCATAAAGCAAAGTAGCTTGAA-----------AA-A-AT-----TATTCCACTATTTATC-TT-A-AATCAAACGGCAA-GTAGCCCAATGAAAATTCT-TA------TATAT-TG-C---ATT------TA--TAAGTAAT-TGTGTGCAT--AATCCACTCGGTGCACGtac
gi|14 : -AACCTTTGT----GATTTG-GTTTTATATGT-GT------T--AGTT-AATTGTAAGTGAT-TCTTC-TT-TT-------AG-G-CA------C-----GAATCATT----TGAT--CAATCACTTG-TCATCCA---ATCATAAATGAAAGTAACTTGAGAATAACTTGAGAACA-AT-----TATTTCATCATTTATC-TT-G-AACCAAACGGCAA-GTAGCCCAAGGAAAATTGT-TAT-----TTTTT-TA-T---ATT------TA--TTAGTATT-TGTGCGCAT--AATCCGCTCGGTGCACGTcta
gi|34 : -AACCTTTGT----AATTTG-TTTTTATATTT-AT------T--AGTT-AATTGTACGTGAT-T---CGTT-TT----TT-AA-A-CA------C-----AAATCATT----TGAT--CAATCATTTG-TCAACCA---ATCATAAAGCGAAGTAGCTTGAGA---------GAA-ATAT-----TATTTCACCATTTATC-TT-A-AATCAAACGGCAA-GTAGCCTAA---------------------------------------------TTAGTATG-TGTGTGCAT--AGTGCGCTCGGTGCACGTtac
gi|22 : ACCTTTGT----AATTTG-GTTTTATATGT-AT------C--AGTT-AACTGTATGTGAT-TCTTC-TT-TT-----T-AA-A-CA------C-----AAATCATT----TGTT--TTACCATTTG-TCATCAA---ATCATCAAGTAAAGTACCTTGAG----------AAA-A-AA-----TATGTCACCATTTATC-TT-G-AATCAAATGACAA-GTTGTCCAGGGAAAATAAT-TT------TATAT-TA-C---ATT------TA--TTAGTATT-TGTGTACAT--AATCCGATCGGTGCACGTtac
gi|23 : ACCTTTGT----AATTTA-GTTTTATATTT-AT------T--AGTT-AATTGTAAGTGAC-T-TTT-GT-TT----TT-AA-A------------------------------T--CAATCATTTG-TCATCCA---ATCGTAAAGCAATGCAGCTTAAG----------AAA-A-A------TATTTCACCATTTACC-TT-G-AATTAAACGGCAA-TTAGCCCAAGGAAAATTGC-TATGCATTTATAT-TA-C---ATTTACATGTA--TTTGTATT-TGTGTGCAT--AATCCACTTGGTGAACt
gi|40 : ACCTTTAT----AATTTG-GTTTTATATGT-AT------A--AGTT-AATGGTACGTGAT-TATTC-TT-TT-----T-AA-A-CA------C-----GAATCATT----TGTT--CAATCAGTAG-TCATCCA---TTCATAAAGCAAAGTAGCTTGAG----------GAA-A-AA-----TATTTCACCATTTATctga
gi|35 : CCTTTGT----AATTTG-TTTTTATATTT-AT------T--AGTT-AATTGTACGTGAT-T---CGTT-TT----TT-AA-A-CA------C-----AAATCATT----TGAT--CAATCATTTG-TCAACCA---ATCATAAAGCGAAGTAGCTTGAGA---------GAA-ATAT-----TATTTCACCATTTATC-TT-A-AATCAAACGGCAA-GTAGCCTAA---------------------------------------------TTAGTATG-TGTGTGCAT--AGTGCGCTCGGTGCACGT
gi|27 : TTTAT----AATTTG-GTTTTATATGT-AT------A--AGTT-AATTGTACGTGAT-TATT---T-TT----TT-AA-A-CA------C-----GAATCATT----TGTA--CAATCATTTG-TCATCCA---ATCATAAAGCAAAGTAGCTT-AC----------GA-----------TATTTGATAATTAATC-TT-G-AATCAAACGGCAA-TTAGCCCAAGGAAAATTCT-TA------TATAT-CA-T---ATG------TA--TTAGTAAT-TGTGTGCAT--AATCCGCTCAGTGCACta
gi|29 : taTAT----AATTTG-GTTTTATATGG-AG------A--AGCA-AATTGTACGTGAT-TATTC-TT-TT-----T-AA-A-CA------C-----GAATCATT----TGTT--CAATCGTTTG-TCATCCA---GTCATAAAGCAAAGTAGCTTGAG----------GAA-A-AT-----TATTTCATCATATATC-TT-A-AATCAAACGGCAA-GTAGT-------AAATTCT-TT------TATAT-TA-C---ATT------TA--ATATTATC-AGTGTGCAT--AATCCGCTCGTTGCACGTctta
gi|31 : AT----AATTTG-GTTTTATATGT-A-------A--AGTT-AATTGTACGTGAT-TATTC-TT-TT----TTTAA-A-CA------C-----GAATCATT----TGTT--CAATCATTTG-TCATCTA---ATCATCAAGCAAAGT-------------------------------TATTTCTCCATTTATC-TT-A-AATCAAACGGCAA-GTAGTCCAAGGAAAATTCT-TG------TATAT-CA-T---ATT------TA--TTAGTAGT-TGTGTGCAC--AATCCGCTCGGTGCACGTt
gi|28 : AT----AATTTT-GTTTTATATGT-AC------A--AGTT-AACTGAACGTGAT-TAATC-TT-TT----T--AA-A-CT------C-----GAATCATT----TGTT--CAATCATTTG-TCATTCA---ATCATAAAGCAAAGTAGTTTGA-----------AAA-A-AT-----AA--TCACTATTTATC-TT-C-AATCAAACGGCAA-GAAGCTCATGGAAAATCTT-TA------TATAT-TA-C---GTT------TA---TAGTAAT-TGTGTGCAC--AATCCACTCGGTGCACGTtac
gi|25 : AT----TATTTT-ATTTTATACCTCAT------T--ATTT-AATTGTGCATGATACATC---T-TA----TG-GA-A-CA------C-----GAATCATT----TGTT--CAATC-TTTGATTTTCCA---ATCATGAAGAAAAGTAGCTTCAG----------AAA-A-AG-----TATTACACCATCGATA-TT-G-AATCAAACAGCAA-GT----CAGCGAAATTTGTGTA------CACAT--G-T---ATT------TACTTTATTAGTATGTGTGTAT--AAtac
gi|26 : aaccaT----AATTTG-GTTTTATATGT-AG------A--AGTT-AATTGTACGTGAT-TATTC-GT-TT----T--AA-A-CA------C-----GAATCATT----TGTT--CAATCATTTG-TCATCCA---ATCATAAATTAAAGTAGCTTGAG----------GAA-A-AT-----TATTTCACCATTTCTC-TT-A-AATCAAATGGCAA-GTAGCCCAAGGAAAATTCT-TA------TATAT-CC-T---ATG------TA--TTAGTAAT-TGTCTGCAT--AATCCGCTCGGTGCACGTaatgcactatgtgta
gi|24 : TTTT-ATTTTATACCTCAT------T--ATTT-AATTGTGCATGATACATC---T-TA----TG-GA-A-CA------C-----GAATCATT----TGTT--CAATCTTTTG-TTTTCCA---ATCATGAAGAAAAGTAGCTTCAG----------AAA-A-AG-----TATTACACCATCGATA-TT-G-AATCAAACAGCAA-GT----CAGCGAAATTTGTGTA------CACATGTA-TTTAATT------TA--TTAGTA---TGTGTGTATAAAATGCACTCTGTGTACtaca
gi|30 : catttttTTATATGT-AT------T--AGTT-AATGGTACGTGAT-TCTTC-TT-TT----T--AA-A-CA------T-----GAATCATT----TGTT--CAATCATTTG-TCATCCA---ATCATAAAGCACAGTAGCTTGAG----------AAA-A-AT-----TATTTCACCATTTATC-TT-A-AATGAAACGGCAA-GTAGCCCTATGAAAATTCT-TA------TATAT-CA-T---ATG------TA--CTAGTATT-CGTGTGCAT--AATCCGCTCGGTGCACGTtt
gi|41 : T-AT------A--AGTT-GATTGGGCATGAT-GTCTC-GT-TG----CT-AAGA-CA------T-----GAATCATT----TATC--TAATCATTTG-TCATCTAATTATCATAAAATAAAGTAGTTTTAGCC--------AAA-A-ATATACATGTTTCATCATTGATtac
gi|36 : tATTTTACGTGAT-TCTTC-TT-TT-------AA-A-CA------C-----GAATCATT----TGTT--CAATCATTTG-TCATCCA---GCCATAAAGCAAAGTAGCTTGAG----------GAA-A-AT-----TATTTTACCATTTATC-TT-G-AATCAAACGGCAA-GTAGCCAAAGGAAAATTCT-TA------TGTAT-TG-C---ATT------CA--TTAG------------------TCCGCTCGATGCACGTat
gi|33 : gtatttattGTT--CAATCATTTG-TCATCCA---ATCATAAAGCAAAGTAGCTTGAG----------GAA-A-AT-----TATTTCACCATTTATC-TT-G-AATCAAACGGCAA--TAGCCCAAGGAAAATTCT-TA------TATAT-CA-T---ATG------TA--TTAGTAAT-TGTGTGCAT--AATCCGCTAAGTGCACGTtac
gi|32 : ttgtccgaaacattagttcgaaacctttataatttggttttatatgtagaaGTT--CAATCATTTG-TCATCCA---ATCATAAAGCAAAGTAGCTTGAG----------GAA-A-AT-----TATTTCACCATTTATC-TT-G-AATCAAACGGCAA--TAGCCCAAGGAAAATTCT-TA------TATAT-CA-T---ATG------TA--TTAGTAAT-TGTGTGCAT--AATCCGCTAAGTGCACGTtac
gi|37 : ttgtccgaaacattagttcgaaacctttataatttggttttatatgtagaaT-----TGTTCAATCATTTGTCATT-C-AATCAAAAAGCAAAGTAGCTTGAGGAAAATTAT-T-----------T-CACC---ATT------TA--TTtac
gi|43 : tttgtttgaaacgttagttcgaaacctttataatttggttttatatgtagaagttaattgtacgtgattattctttttaaacacgaagcatT-CA-T---ATT------TA--TTAGTAGT-TGTGTGCAT--AATCCGCTCGGTGCACGTttaaaatcaaacg
gi|42 : A--TTAGTATT-TGTGTGCAT--AATCGGCTCGGTGCACtac
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|44 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTT
Alignments
lowQualScore : 1111111
lowQualScore : 1 6666 11 2 7777777777 2 2 3 2 1 8888888 1 2 555555 44444 2222 11 0 111 7777777777 0 1 33333 1 1 2 2 444444 1 111 5555555 11 1 1
lowQualScore : . .... .. . .......... . . . . . ....... . . ...... ..... .... .. . ... .......... . . ..... . . . . ...... . ... ....... .. . .
lowQualScore : 5 1111 44 0 2222222222 0 0 0 0 0 4444444 0 9 666666 99999 1111 33 9 666 2222222222 9 9 33333 1 1 2 2 333333 1 999 1111111 44 4 1
consensus : GTTTGAAACGTTAGTTCGA-AACCTTTAT----AATTTGGTTTTATAT--GT-AT------A--AGTT-AATTGTACGTGAT-TATTC-TT-TT----TT-AA-A-CA------C-----GAATCATT----TGTT--CAATCATTTG-TCATCCA---ATCATAAAGCAAAGTAGCTTGAG----------GAA-A-AT-----TATTTCACCATTTATCTT-A-AATCAAACGGCAAGT-AGCCCAAGGAAAATTCT-TA------TATAT-CAT---ATT------TA--TTAGTANT-TGTGTGCATAATCCGCTCGGTGCACGT
Reference ( family-5468 ) : GTTTGAAACGTTAGTTCGA-AACCTTTAT----AATTTGGTTTTATAT--GT-AT------A--AGTT-AATTGTACGTGAT-TATTC-TT-TT----TT-AA-A-CA------C-----GAATCATT----TGTT--CAATCATTTG-TCATCCA---ATCATAAAGCAAAGTAGCTTGAG----------GAA-A-AT-----TATTTCACCATTTATCTT-A-AATCAAACGGCAAGT-AGCCCAAGGAAAATTCT-TA------TATAT-CAT---ATT------TA--TTAGTANT-TGTGTGCATAATCCGCTCGGTGCACGT
gi|1 : GTTTGAAACGTTAGTTCGA-AACCTTTTTTTTAAATTTGGTTTTATAT--GT-AG------A--AGTT-AATTGTACGTGAT-TATTC-TT-TT-----T-AA-A-CA------C-----GAATCATT----TGTT--CAATCATTTG-TCATCCA---ATCATAAAGCAAAGTAGCTTGAG----------GAA-A-AT-----TATTTCACCATTTATCTT-A-AATCAAACGGCAAGT-AGCCCAAGGAAAATTCA-TA------TATAT-CAT---ATA------TA--TTAGTAGT-TGTGTGCATAATCTGCTCGGTGCACGT
gi|10 : gtttTGAAACGTTAGTTCGA-AACCTTTGT----AATTTGGTTTTATAT--GT-AG------A--AATT-AATTGTACGTGAT-TATTA-TT-TT-----T-AA-A-CA------C-----GAATCATT----TATT--CAATCATTTG-TCATCCA---ATCATAAAGCAAAGTAGCTTGAG----------GAA-A-AT-----TATTTCAACATTTATCTT-A-AATCAAACGGCAAGT-AGCCCAAGGAAAATTCT-TA------TATAT-CAT---ATG------TA--TGAGTAAT-TGTGTGCATAATCCGCTCGGTGCACGTtac
gi|11 : TTGAAACGTTAGTTCGA-AACCTTTAT----AATTTGGTTTTATAT--GT-AT------A--AGTT-AATTGTACGTGAT-TATTC-TT-TT-----T-AA-A-CA------C-----GAATCATT----TGTT--CAATCATTTG-TCATCCA---ATTATAAAGCAAAGTAGCTTGAG----------GAA-A-AT-----TATTTCACCATTTATCTT---AATCAAACGGCAAGT-AGTCCAAGGAAAATTCT-TA------TATAT-CAT---ATG------TA--TTAGTAGT-TGTGTGCATAAACCGCTCGGTGCACGTta
gi|12 : AAACGCTAGTTCGA-AATCTTTAT----AATTTGGTTTTATAT--GT-AT------C--AGTT-AACTGTACGTGAG-TTTTC-TT-TT-----T-AA-A-CA------C-----GAATCATG----TGTC--CAATCATTTG-TCATTCA---ATCATAAAGCAAAGTAGCTTGAG----------AAA-A-AT-----TATTTCACTATTAATCTT-A-AATCAAACGGCAAGT-AACTCAAGGAAAATTCT-TA------TATAT-TGC---ATT------TA--TTACTAAG-TGTGTGCATAATTCGCTCGGTGCACc
gi|13 : AAACGTTAGTTCGA-A-CTTTTAT----AATTTGGTTTTATAG--GT-AT------A--AGTT-AATTGTACGTGAT-TATTC-TT-TT----T--AA-A-CA------C-----GAATCATT----TGTT--CAATAGTTTG-TCATACA---ATCATAAAGCAAAGTAGCTTGAA-----------AA-A-AT-----TATTCCACTATTTATCTT-A-AATCAAACGGCAAGT-AGCCCAATGAAAATTCT-TA------TATAT-TGC---ATT------TA--TTAGTAAT-TGTGTGCATACTCCGCTCGGTGCACGttta
gi|14 : -AACCTTTGT----GATTTGGTTTTATAT--GT-GT------T--AGTT-AATTGTAAGTGAT-TCTTC-TT-TT-------AG-G-CA------C-----GAATCATT----TGAT--CAATCACTTG-TCATCCA---ATCATAAATGAAAGTAACTTGAGAATAACTTGAGAACA-AT-----TATTTCATCATTTATCTT-G-AACCAAACGGCAAGT-AGCCCAAGGAAAATTGT-TAT-----TTTTT-TAT---ATT------TA--TTAGTATT-TGTGCGCATAATCCGCTCGGTGCACGTctac
gi|15 : CATTTGTTTGA-AACCTTTAT----AATTTGGTTTTATAT--GT-AG------A--AGTT-AATTTTACGTGAT-TATTC-TT-TT----A--AA-A-CA------C-----GAATCATT----TGTT--CAATCATTTG-TCATCCA---ATCATAAAGCAAAGTAGCTTGAG----------GAA-A-AT-----TATTTCACCATTTCTCTT-A-AATCAAACGGCAAGT-AGCCCAAGGAAAACTCT-TA------TATAT-CAT---ATG------TA--TTAGTAAT-TGTGTGCATAATCCGCTCGGTGCACGTtac
gi|16 : AGTTCGA-AACCTTCAT----AATTTGGTTTAATAT--GT-AT------A--AGTT-AATTGTACGTGAT-TATTC-TT-TT----A--AA-A-CA------C-----GAATCAAT----TGTT--CAATCGTTTG-TCATCCA---ATCATAAAGCAAAGTAGCTTGCG----------AAA-A-AT-----TATTTCACCATTTATCTT-A-AATCAAACGGCAAGT-AGCCCAAGGAAAATTCT-AA------TATAT-TAC---ATT------TA--ATATTATC-AGTGTGCATAATCCGCTCGGTGCACGTt
gi|17 : AGTTTGA-AACCTTTGT----AATTTGGTTTTATAT--GT-AT------T--AGTT-AATTGTACGTGAT-TCTTC-TT-TT----T--AA-A-CA------C-----GAATCATT----TGTT--CAATCAATTG-TCATCCA---ATAATAAAGCAAAGTAGTTTGAG----------AAA-A-AT-----TATTTCACTATT-ATCTT-A-AATCAAACGGAAAGT-AGCCCAAGGGAAATTCT-TA------TATAC-AAT---ATT------TA--TTAGTATG-TGTGTGAACAATCCGTTCGGTGCACGTta
gi|18 : TCGA-AACCTTTAT----AATTTGGTTTTATAT--GT-AT------A--GGTT-AATTGTACATGAT-TATTC-TT-TT-----T-AA-A-CA------C-----GAATCATT----TGTT--CAATCATTTG-TCATCCA---ATCATAAAGCAAAGTAGCTTGAG----------AAA-A-AC-----TATTTCACCATTTATCTT-A-AATCAAACGGCAAGT-AGCCCAAGGAAAATTCT-TA------TATAT-CAT---ATT------TA--TTAGTATT-TGTGTGCATAATCCGCTCGGTGCACGTtac
gi|19 : CGTTAGTTTGA-ATACTTTGT----GATTTGGTTTTATAT--TC-AT------T--AGTT-AATTTTACGTGAT-TATTC-TG-T--------AA-GGCA------C-----GAATCATG----TGTT--CAATCATTTC-TCATCCA---ATCATAAAGCAAAGATGCTTGGG----------AAA-A-AAA----TATTTCACCATTTATCTT-G-AATCAAATGGCAAAT-AGCCAAAGGAAAAGTCA-TA------TGCAT-TGC---ATG------TA--TTAGTATT-TGTGTACATAATCCGCTTGGTGtac
gi|2 : GTTTGAAATGTTAGTTCGA-AACCTTTTTCTTTAATTTAGTTTTATAT--GT-AG------A--AGTT-AATTGTACGTGAT-TATTC-TT-TT-----T-AA-A-CA------C-----GAATCATT----TGTT--CAATCATTTG-TCATCCA---ATCATAAAGCAAAGTAGCTTGAG----------GAA-A-AT-----TATTTCACTATTTATCTT-A-AATCAAACGGCAGGT-AGCCCAAGGAAAATTCA-TA------TATAT-CAT---ATA------TA--TAAGTAGT-TGTGTGCATAATCCGCTCGGTGCACGTa
gi|20 : tttAAACGTTAGTTCGA-AACCTTTAT----AATTTGGTTTTATAT--GT-A-------A--AGTT-AATTGTACGTGAT-TATTC-TT-TT----TT-AA-A-CA------C-----GAATC------------------ATTTG-TCATCTA---ATCATAAAGCAAAGTAGTTTGAG----------GAA-A-AT-----TATTTCACCATTTATCTT-A-AATCAAACGGCAAGT-AGTCCAAGGAAAATTCA-TA------TATAT-CAT---ATA------TA--TTAGTAGT-TGTGTGCATAAACCGCTCGGTGCACGTta
gi|21 : TCGA-A-CTTTTAT----AATTTGGTTTTATAT--GT-AT------A--AGTT-AATTGTACGTGAT-TATTC-TT-TT----T--AA-A-CA------C-----GAATCATT----TGTT--CAATCGTTTG-TCATACA---ATCATAAAGCAAAGTAGCTTGAA-----------AA-A-AT-----TATTCCACTATTTATCTT-A-AATCAAACGGCAAGT-AGCCCAATGAAAATTCT-TA------TATAT-TGC---ATT------TA--TAAGTAAT-TGTGTGCATAATCCACTCGGTGCACGta
gi|22 : ACCTTTGT----AATTTGGTTTTATAT--GT-AT------C--AGTT-AACTGTATGTGAT-TCTTC-TT-TT-----T-AA-A-CA------C-----AAATCATT----TGTT--TTACCATTTG-TCATCAA---ATCATCAAGTAAAGTACCTTGAG----------AAA-A-AA-----TATGTCACCATTTATCTT-G-AATCAAATGACAAGT-TGTCCAGGGAAAATAAT-TT------TATAT-TAC---ATT------TA--TTAGTATT-TGTGTACATAATCCGATCGGTGCACGTcta
gi|23 : ACCTTTGT----AATTTAGTTTTATAT--TT-AT------T--AGTT-AATTGTAAGTGAC-T-TTT-GT-TT----TT-AA-A------------------------------T--CAATCATTTG-TCATCCA---ATCGTAAAGCAATGCAGCTTAAG----------AAA-A-AT------ATTTCACCATTTACCTT-G-AATTAAACGGCAATT-AGCCCAAGGAAAATTGC-TATGCATTTATAT-TAC---ATTTACATGTA--TTTGTATT-TGTGTGCATAATCCACTTGGTGAACt
gi|24 : TTTTATTTTATAC--CTCAT------T--ATTT-AATTGTGCATGATACATC---T-TA----TG-GA-A-CA------C-----GAATCATT----TGTT--CAATCTTTTG-TTTTCCA---ATCATGAAGAAAAGTAGCTTCAG----------AAA-A-AG-----TATTACACCATCGATATT-G-AATCAAACAGCAAGTCAGC-----GAAATTTGTGTA------CACATGTATTTAATT------TA--TTAGTATG-TGTGTATAAAATGCACTCTGTGTACctga
gi|25 : catttttAT----TATTTTATTTTATAC--CTCAT------T--ATTT-AATTGTGCATGATACATC---T-TA----TG-GA-A-CA------C-----GAATCATT----TGTT--CAATC-TTTGATTTTCCA---ATCATGAAGAAAAGTAGCTTCAG----------AAA-A-AG-----TATTACACCATCGATATT-G-AATCAAACAGCAAGTCAGC-----GAAATTTGTGTA------CACAT--GT---ATT------TACTTTATTAGTATGTGTGTATAAtt
gi|26 : aaccaT----AATTTGGTTTTATAT--GT-AG------A--AGTT-AATTGTACGTGAT-TATTC-GT-TT----T--AA-A-CA------C-----GAATCATT----TGTT--CAATCATTTG-TCATCCA---ATCATAAATTAAAGTAGCTTGAG----------GAA-A-AT-----TATTTCACCATTTCTCTT-A-AATCAAATGGCAAGT-AGCCCAAGGAAAATTCT-TA------TATAT-CCT---ATG------TA--TTAGTAAT-TGTCTGCATAATCCGCTCGGTGCACGTaatgcactatgtgta
gi|27 : TTTAT----AATTTGGTTTTATAT--GT-AT------A--AGTT-AATTGTACGTGAT-TATT---T-TT----TT-AA-A-CA------C-----GAATCATT----TGTA--CAATCATTTG-TCATCCA---ATCATAAAGCAAAGTAGCTT-AC----------GA-----------TATTTGATAATTAATCTT-G-AATCAAACGGCAATT-AGCCCAAGGAAAATTCT-TA------TATAT-CAT---ATG------TA--TTAGTAAT-TGTGTGCATAATCCGCTCAGTGCACtaca
gi|28 : taAT----AATTTTGTTTTATAT--GT-AC------A--AGTT-AACTGAACGTGAT-TAATC-TT-TT----T--AA-A-CT------C-----GAATCATT----TGTT--CAATCATTTG-TCATTCA---ATCATAAAGCAAAGTAGTTTGA-----------AAA-A-AT-----AA--TCACTATTTATCTT-C-AATCAAACGGCAAGA-AGCTCATGGAAAATCTT-TA------TATAT-TAC---GTT------TA---TAGTAAT-TGTGTGCACAATCCACTCGGTGCACGTctta
gi|29 : TAT----AATTTGGTTTTATAT--GG-AG------A--AGCA-AATTGTACGTGAT-TATTC-TT-TT-----T-AA-A-CA------C-----GAATCATT----TGTT--CAATCGTTTG-TCATCCA---GTCATAAAGCAAAGTAGCTTGAG----------GAA-A-AT-----TATTTCATCATATATCTT-A-AATCAAACGGCAAGT-AGT-------AAATTCT-TT------TATAT-TAC---ATT------TA--ATATTATC-AGTGTGCATAATCCGCTCGTTGCACGTtac
gi|3 : GTTTGAAACGTTAGTTCGA-AACCTTTAT----AATTTGGTTTTATAT--GT-A-------A--AGTT-AATTGTACGTGAT-TATTC-TT-TTTTTTTT-AA-A-CA------C-----GAATCATT----TGTT--CAATCATTTG-TCATCTA---ATCATAAAGCAAAGTAGCTTGAG----------GAA-A-AT-----TATTTCACCATTTATCTT-A-AATCAAACGGCAAGT-AGTCCAAGGAAAATTCA-TA------TATAT-CAT---ATA------TA--TTAGTAGT-TGTGTGCACAATCCGCTCGGTGCACGTt
gi|30 : gTTATAT--GT-AT------T--AGTT-AATGGTACGTGAT-TCTTC-TT-TT----T--AA-A-CA------T-----GAATCATT----TGTT--CAATCATTTG-TCATCCA---ATCATAAAGCACAGTAGCTTGAG----------AAA-A-AT-----TATTTCACCATTTATCTT-A-AATGAAACGGCAAGT-AGCCCTATGAAAATTCT-TA------TATAT-CAT---ATG------TA--CTAGTATT-CGTGTGCATAATCCGCTCGGTGCACGTtac
gi|31 : AT----AATTTGGTTTTATAT--GT-A-------A--AGTT-AATTGTACGTGAT-TATTC-TT-TT----TTTAA-A-CA------C-----GAATCATT----TGTT--CAATCATTTG-TCATCTA---ATCATCAAGCAAAGT-------------------------------TATTTCTCCATTTATCTT-A-AATCAAACGGCAAGT-AGTCCAAGGAAAATTCT-TG------TATAT-CAT---ATT------TA--TTAGTAGT-TGTGTGCACAATCCGCTCGGTGCACGTtac
gi|32 : GTCCGAAACATTAGTTCGA-AACCTTTAT----AATTTGGTTTTATAT--GT-AG------A--AGTTCAATCAT---TTGT-CATCC-AA-TC----AT-AA-AGCAAAGTAGCTTGAGGAA--AAT----TATT--TCACCATTTA-TC-TTGA---ATCAAACGGCAA--TAGCCCAAG----------GAA-A-AT-----TCTTtac
gi|32 : ttGTT--CAATCATTTG-TCATCCA---ATCATAAAGCAAAGTAGCTTGAG----------GAA-A-AT-----TATTTCACCATTTATCTT-G-AATCAAACGGCAA-T-AGCCCAAGGAAAATTCT-TA------TATAT-CAT---ATG------TA--TTAGTAAT-TGTGTGCATAATCCGCTAAGTGCACGTatatatcatatgtattagtaattgtgtgcataatccgctaagtgcacgttac
gi|33 : ttgtccgaaacattagttcgaaacctttataatttggttttatatgtagaaGTCCGAAACATTAGTTCGA-AACCTTTAT----AATTTGGTTTTATAT--GT-AG------A--AGTTCAATCAT---TTGT-CATCC-AA-TC----AT-AA-AGCAAAGTAGCTTGAGGAA--AAT----TATT--TCACCATTTA-TC-TTGA---ATCAAACGGCAA--TAGCCCAAG----------GAA-A-AT-----TCTTtac
gi|33 : ttGTT--CAATCATTTG-TCATCCA---ATCATAAAGCAAAGTAGCTTGAG----------GAA-A-AT-----TATTTCACCATTTATCTT-G-AATCAAACGGCAA-T-AGCCCAAGGAAAATTCT-TA------TATAT-CAT---ATG------TA--TTAGTAAT-TGTGTGCATAATCCGCTAAGTGCACGTatatatcatatgtattagtaattgtgtgcataatccgctaagtgcacgttac
gi|34 : ttgtccgaaacattagttcgaaacctttataatttggttttatatgtagaa-AACCTTTGT----AATTTGTTTTTATAT--TT-AT------T--AGTT-AATTGTACGTGAT-T---CGTT-TT----TT-AA-A-CA------C-----AAATCATT----TGAT--CAATCATTTG-TCAACCA---ATCATAAAGCGAAGTAGCTTGAGA---------GAA-ATAT-----TATTTCACCATTTATCTT-A-AATCAAACGGCAAGT-AGCCTA------------------------------------------A--TTAGTATG-TGTGTGCATAGTGCGCTCGGTGCACGTtac
gi|35 : CCTTTGT----AATTTGTTTTTATAT--TT-AT------T--AGTT-AATTGTACGTGAT-T---CGTT-TT----TT-AA-A-CA------C-----AAATCATT----TGAT--CAATCATTTG-TCAACCA---ATCATAAAGCGAAGTAGCTTGAGA---------GAA-ATAT-----TATTTCACCATTTATCTT-A-AATCAAACGGCAAGT-AGCCTA------------------------------------------A--TTAGTATG-TGTGTGCATAGTGCGCTCGGTGCACGTtac
gi|36 : ATTTTACGTGAT-TCTTC-TT-TT-------AA-A-CA------C-----GAATCATT----TGTT--CAATCATTTG-TCATCCA---GCCATAAAGCAAAGTAGCTTGAG----------GAA-A-AT-----TATTTTACCATTTATCTT-G-AATCAAACGGCAAGT-AGCCAAAGGAAAATTCT-TA------TGTAT-TGC---ATT------CA--TTAG----------------TCCGCTCGATGCACGTta
gi|37 : gtatttattGTTTGAAACGTTAGTTCGA-AACCTTTAT----AATTTGGTTTTATAT--GT-AG------A--AGTT-AATTGTACGTGAT-TATTC-TT-TT-----T-AA-A-CA------C-----GAAGCATT----TGTT--CAATCATTTG-TCATTCA---ATCAAAAAGCAAAGTAGCTTGAG----------GAA-A-AT-----TATTTCACCATTTATTTTAA-AATCAAACGtac
gi|38 : tttTTTGTTTGATAACCTGTAT--------TGCTTGTATGTTAGT-AT------T--AGCT-GATGGTGCATGGT-T-TTC-TT-TG----TA-AA-A-CA------A-----TAACGATT----AACT--CA-TTGTTTA-TAATCCG---ATCACGAAACAAAGTATC-TAAG----------GGA-A-AT-----GATTTCACTATCTATATT-AGAATCAACCG
gi|39 : TAGTTTGA-AACCTTAGT----AGTTTGGTTTTGTAT--GT-AT------T--AATT-AATTTTACGCGAT-T---C-TTATT----TT-AG-A-CA------C-----GAATCATTAAATTTTTAACAATCGTTTG-TCATCCA---ATCACAAAGCAGAGTAGCTTGAG----------AAA-A-A------TATTTCA
gi|4 : GTTTGAAACGTTAGTTCGA-AACCTTTTTTT--AATTTGGTTTTATAT--GT-AT------A--AGTT-AATTGTACGTGAT-TATTC-TT-TT----TT-AA-A-CA------C-----GAATCATT----TGTT--CAATCATTTG-TCATCCA---ATTATAAAGCAAAGTAGCTTGAG----------GAA-A-AT-----TATTTCACCATTTATCTT-A-AATCAAACGGCAAGT-AGTCCAAGGAAAATTCT-TT------TATAT-CAT---ATT------TA--TTAGTAGT-TGTGTGTACACGCCGCTCGGTGCACGT
gi|40 : ACCTTTAT----AATTTGGTTTTATAT--GT-AT------A--AGTT-AATGGTACGTGAT-TATTC-TT-TT-----T-AA-A-CA------C-----GAATCATT----TGTT--CAATCAGTAG-TCATCCA---TTCATAAAGCAAAGTAGCTTGAG----------GAA-A-AA-----TATTTCACCATTTATtac
gi|41 : T-AT------A--AGTT-GATTGGGCATGAT-GTCTC-GT-TG----CT-AAGA-CA------T-----GAATCATT----TATC--TAATCATTTG-TCATCTAATTATCATAAAATAAAGTAGTTTTAGCC--------AAA-A-ATATACATGTTTCATCATTGAT
gi|42 : tA--TTAGTATT-TGTGTGCATAATCGGCTCGGTGCACat
gi|43 : tcaaacagcaagtagccT-CAT---ATT------TA--TTAGTAGT-TGTGTGCATAATCCGCTCGGTGCACGTaataca
gi|5 : GTTTGAAACGTTAGT-CGA-AACCTTTAT----AATTTGGTTTTATAT--GT-AG------A--AGTT-AATTGTACGTGAT-TACTC-TT-TT----T--AA-A-CA------C-----GAATCATT----TGTT--TAATCATTTG-TCATCCA---ATCATAAAGCAAAGTAGCTTGAG----------GAA-A--T-----TATTTCACCATTTATCTT-A-AATCAAACGGCAAGT-AGCCCAAGGAAAATTCT-TA------TATAT-CAT---ATG------TA--TTAGTATT-TATGTGCACAAACCGCTCGGTGCACGTtac
gi|6 : cgtttTTCGAAACGTTAGTTTGA-AACCTTTGT----AATTTGGTTTTATAT--GT-AA------T--AGTT-AATTGTACGTGAT-TCTTA-TT-TT-----T-AA-A-CA------C-----GAATCATT----TGTT--CAATCATTTG-TCATCCA---ATCATAAAGTAAAGTAGCTTGAG----------AAA-A-AA-----TATTTCACCATTTATCTT-A-AATCAAACGACATGT-AGCCAAAGGATAATTCT-TA------TATAT-TAC---ATT------TA--TTAGTATT-TGTGTGCTTAGTCCGCTCGGTGCACGTta
gi|7 : GTTTGAAACGTTAGTTCGA-AACCTTTAT----AATTTGGTTTTATAT--GT-A-------A--AGTT-AATTGTACGTGAT-TAATC-TT-TT----TT-AA-A-CA------C-----GAATCATT----TGTT--CAATCATTTG-TCATCTA---ATCATAAAGCAAAGTAGCTTGAG----------GAA-A-AT-----TATTTCACCATTTATCTT-T-AATCAAACGGCAAGT-AGTCCAAGGAAAATTCT-TA------TATAT-CAT---ATT------TA--TTAGTAGT-TGTGTGCATAATCCGCTCGGTGCACGTtac
gi|8 : GTTTGAAACGTTAGTTCGA-AACCTTTAT----AATTTGGTTTTAAAT--GT-AT------A--AGTT-AATTGTACGTGAT-TATTC-TT-TT----TT-AA-A-CA------C-----GAATCATT----TGTT--CAATCATTTG-TCATCCA---ATCATAAAGCAAAGTAGCTTGAG----------GAA-A-AT-----TATTTCACCATTTATCTT-A-AATCAAACGGCAAGT-AGTCCAAGGAAAATTCT-TA------TATAT-CAT---ATT------TA--TTAGTAGT-TGTGTGCATAATCCGCTCGGTGCACGTta
gi|9 : ACGTTAGTTTGA-AACCATTGT----AATTTGGTTTTATGT--GT-ATTAGTTAATTAGTT-AATTGTACGTGAT-T------T-TT----TT-AA-A-CA------C-----GAATCATT----TGTT--CAATCATTTG-TTATCCA---ATCATAAAGCAAAGTAGCTTGAG----------AAA-A-AT-----TATTTCACCATTTATCTT-A-AATCAAACGGCAAGT-AGCCCAAGGAAAATTCT-TA------TATAT-CAT---ATC------TA--TTAGTAAT-TGTGTGCAATATCCGCTCGGTGCACGT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|44 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTT
Alignments
lowQualScore : 1111111
lowQualScore : 1 6666 11 2 7777777777 2 2 3 2 1 8888888 1 2 555555 44444 2222 11 0 111 7777777777 0 1 33333 1 1 2 2 444444 1 111 5555555 11 1 1
lowQualScore : . .... .. . .......... . . . . . ....... . . ...... ..... .... .. . ... .......... . . ..... . . . . ...... . ... ....... .. . .
lowQualScore : 5 1111 44 0 2222222222 0 0 0 0 0 4444444 0 9 666666 99999 1111 33 9 666 2222222222 9 9 33333 1 1 2 2 333333 1 999 1111111 44 4 1
consensus : GTTTGAAACGTTAGTTCGA-AACCTTTAT----AATTTGGTTTTATAT--GT-AT------A--AGTT-AATTGTACGTGAT-TATTC-TT-TT----TT-AA-A-CA------C-----GAATCATT----TGTT--CAATCATTTG-TCATCCA---ATCATAAAGCAAAGTAGCTTGAG----------GAA-A-AT-----TATTTCACCATTTATCTT-A-AATCAAACGGCAAGT-AGCCCAAGGAAAATTCT-TA------TATAT-CAT---ATT------TA--TTAGTANT-TGTGTGCATAATCCGCTCGGTGCACGT
Reference ( family-5468 ) : GTTTGAAACGTTAGTTCGA-AACCTTTAT----AATTTGGTTTTATAT--GT-AT------A--AGTT-AATTGTACGTGAT-TATTC-TT-TT----TT-AA-A-CA------C-----GAATCATT----TGTT--CAATCATTTG-TCATCCA---ATCATAAAGCAAAGTAGCTTGAG----------GAA-A-AT-----TATTTCACCATTTATCTT-A-AATCAAACGGCAAGT-AGCCCAAGGAAAATTCT-TA------TATAT-CAT---ATT------TA--TTAGTANT-TGTGTGCATAATCCGCTCGGTGCACGT
gi|1 : GTTTGAAACGTTAGTTCGA-AACCTTTTTTTTAAATTTGGTTTTATAT--GT-AG------A--AGTT-AATTGTACGTGAT-TATTC-TT-TT-----T-AA-A-CA------C-----GAATCATT----TGTT--CAATCATTTG-TCATCCA---ATCATAAAGCAAAGTAGCTTGAG----------GAA-A-AT-----TATTTCACCATTTATCTT-A-AATCAAACGGCAAGT-AGCCCAAGGAAAATTCA-TA------TATAT-CAT---ATA------TA--TTAGTAGT-TGTGTGCATAATCTGCTCGGTGCACGT
gi|10 : gtttTGAAACGTTAGTTCGA-AACCTTTGT----AATTTGGTTTTATAT--GT-AG------A--AATT-AATTGTACGTGAT-TATTA-TT-TT-----T-AA-A-CA------C-----GAATCATT----TATT--CAATCATTTG-TCATCCA---ATCATAAAGCAAAGTAGCTTGAG----------GAA-A-AT-----TATTTCAACATTTATCTT-A-AATCAAACGGCAAGT-AGCCCAAGGAAAATTCT-TA------TATAT-CAT---ATG------TA--TGAGTAAT-TGTGTGCATAATCCGCTCGGTGCACGTtac
gi|11 : TTGAAACGTTAGTTCGA-AACCTTTAT----AATTTGGTTTTATAT--GT-AT------A--AGTT-AATTGTACGTGAT-TATTC-TT-TT-----T-AA-A-CA------C-----GAATCATT----TGTT--CAATCATTTG-TCATCCA---ATTATAAAGCAAAGTAGCTTGAG----------GAA-A-AT-----TATTTCACCATTTATCTT---AATCAAACGGCAAGT-AGTCCAAGGAAAATTCT-TA------TATAT-CAT---ATG------TA--TTAGTAGT-TGTGTGCATAAACCGCTCGGTGCACGTta
gi|12 : AAACGCTAGTTCGA-AATCTTTAT----AATTTGGTTTTATAT--GT-AT------C--AGTT-AACTGTACGTGAG-TTTTC-TT-TT-----T-AA-A-CA------C-----GAATCATG----TGTC--CAATCATTTG-TCATTCA---ATCATAAAGCAAAGTAGCTTGAG----------AAA-A-AT-----TATTTCACTATTAATCTT-A-AATCAAACGGCAAGT-AACTCAAGGAAAATTCT-TA------TATAT-TGC---ATT------TA--TTACTAAG-TGTGTGCATAATTCGCTCGGTGCACc
gi|13 : AAACGTTAGTTCGA-A-CTTTTAT----AATTTGGTTTTATAG--GT-AT------A--AGTT-AATTGTACGTGAT-TATTC-TT-TT----T--AA-A-CA------C-----GAATCATT----TGTT--CAATAGTTTG-TCATACA---ATCATAAAGCAAAGTAGCTTGAA-----------AA-A-AT-----TATTCCACTATTTATCTT-A-AATCAAACGGCAAGT-AGCCCAATGAAAATTCT-TA------TATAT-TGC---ATT------TA--TTAGTAAT-TGTGTGCATACTCCGCTCGGTGCACGttta
gi|14 : -AACCTTTGT----GATTTGGTTTTATAT--GT-GT------T--AGTT-AATTGTAAGTGAT-TCTTC-TT-TT-------AG-G-CA------C-----GAATCATT----TGAT--CAATCACTTG-TCATCCA---ATCATAAATGAAAGTAACTTGAGAATAACTTGAGAACA-AT-----TATTTCATCATTTATCTT-G-AACCAAACGGCAAGT-AGCCCAAGGAAAATTGT-TAT-----TTTTT-TAT---ATT------TA--TTAGTATT-TGTGCGCATAATCCGCTCGGTGCACGTctac
gi|15 : CATTTGTTTGA-AACCTTTAT----AATTTGGTTTTATAT--GT-AG------A--AGTT-AATTTTACGTGAT-TATTC-TT-TT----A--AA-A-CA------C-----GAATCATT----TGTT--CAATCATTTG-TCATCCA---ATCATAAAGCAAAGTAGCTTGAG----------GAA-A-AT-----TATTTCACCATTTCTCTT-A-AATCAAACGGCAAGT-AGCCCAAGGAAAACTCT-TA------TATAT-CAT---ATG------TA--TTAGTAAT-TGTGTGCATAATCCGCTCGGTGCACGTtac
gi|16 : AGTTCGA-AACCTTCAT----AATTTGGTTTAATAT--GT-AT------A--AGTT-AATTGTACGTGAT-TATTC-TT-TT----A--AA-A-CA------C-----GAATCAAT----TGTT--CAATCGTTTG-TCATCCA---ATCATAAAGCAAAGTAGCTTGCG----------AAA-A-AT-----TATTTCACCATTTATCTT-A-AATCAAACGGCAAGT-AGCCCAAGGAAAATTCT-AA------TATAT-TAC---ATT------TA--ATATTATC-AGTGTGCATAATCCGCTCGGTGCACGTt
gi|17 : AGTTTGA-AACCTTTGT----AATTTGGTTTTATAT--GT-AT------T--AGTT-AATTGTACGTGAT-TCTTC-TT-TT----T--AA-A-CA------C-----GAATCATT----TGTT--CAATCAATTG-TCATCCA---ATAATAAAGCAAAGTAGTTTGAG----------AAA-A-AT-----TATTTCACTATT-ATCTT-A-AATCAAACGGAAAGT-AGCCCAAGGGAAATTCT-TA------TATAC-AAT---ATT------TA--TTAGTATG-TGTGTGAACAATCCGTTCGGTGCACGTta
gi|18 : TCGA-AACCTTTAT----AATTTGGTTTTATAT--GT-AT------A--GGTT-AATTGTACATGAT-TATTC-TT-TT-----T-AA-A-CA------C-----GAATCATT----TGTT--CAATCATTTG-TCATCCA---ATCATAAAGCAAAGTAGCTTGAG----------AAA-A-AC-----TATTTCACCATTTATCTT-A-AATCAAACGGCAAGT-AGCCCAAGGAAAATTCT-TA------TATAT-CAT---ATT------TA--TTAGTATT-TGTGTGCATAATCCGCTCGGTGCACGTtac
gi|19 : CGTTAGTTTGA-ATACTTTGT----GATTTGGTTTTATAT--TC-AT------T--AGTT-AATTTTACGTGAT-TATTC-TG-T--------AA-GGCA------C-----GAATCATG----TGTT--CAATCATTTC-TCATCCA---ATCATAAAGCAAAGATGCTTGGG----------AAA-A-AAA----TATTTCACCATTTATCTT-G-AATCAAATGGCAAAT-AGCCAAAGGAAAAGTCA-TA------TGCAT-TGC---ATG------TA--TTAGTATT-TGTGTACATAATCCGCTTGGTGtac
gi|2 : GTTTGAAATGTTAGTTCGA-AACCTTTTTCTTTAATTTAGTTTTATAT--GT-AG------A--AGTT-AATTGTACGTGAT-TATTC-TT-TT-----T-AA-A-CA------C-----GAATCATT----TGTT--CAATCATTTG-TCATCCA---ATCATAAAGCAAAGTAGCTTGAG----------GAA-A-AT-----TATTTCACTATTTATCTT-A-AATCAAACGGCAGGT-AGCCCAAGGAAAATTCA-TA------TATAT-CAT---ATA------TA--TAAGTAGT-TGTGTGCATAATCCGCTCGGTGCACGTa
gi|20 : tttAAACGTTAGTTCGA-AACCTTTAT----AATTTGGTTTTATAT--GT-A-------A--AGTT-AATTGTACGTGAT-TATTC-TT-TT----TT-AA-A-CA------C-----GAATC------------------ATTTG-TCATCTA---ATCATAAAGCAAAGTAGTTTGAG----------GAA-A-AT-----TATTTCACCATTTATCTT-A-AATCAAACGGCAAGT-AGTCCAAGGAAAATTCA-TA------TATAT-CAT---ATA------TA--TTAGTAGT-TGTGTGCATAAACCGCTCGGTGCACGTta
gi|21 : TCGA-A-CTTTTAT----AATTTGGTTTTATAT--GT-AT------A--AGTT-AATTGTACGTGAT-TATTC-TT-TT----T--AA-A-CA------C-----GAATCATT----TGTT--CAATCGTTTG-TCATACA---ATCATAAAGCAAAGTAGCTTGAA-----------AA-A-AT-----TATTCCACTATTTATCTT-A-AATCAAACGGCAAGT-AGCCCAATGAAAATTCT-TA------TATAT-TGC---ATT------TA--TAAGTAAT-TGTGTGCATAATCCACTCGGTGCACGta
gi|22 : ACCTTTGT----AATTTGGTTTTATAT--GT-AT------C--AGTT-AACTGTATGTGAT-TCTTC-TT-TT-----T-AA-A-CA------C-----AAATCATT----TGTT--TTACCATTTG-TCATCAA---ATCATCAAGTAAAGTACCTTGAG----------AAA-A-AA-----TATGTCACCATTTATCTT-G-AATCAAATGACAAGT-TGTCCAGGGAAAATAAT-TT------TATAT-TAC---ATT------TA--TTAGTATT-TGTGTACATAATCCGATCGGTGCACGTcta
gi|23 : ACCTTTGT----AATTTAGTTTTATAT--TT-AT------T--AGTT-AATTGTAAGTGAC-T-TTT-GT-TT----TT-AA-A------------------------------T--CAATCATTTG-TCATCCA---ATCGTAAAGCAATGCAGCTTAAG----------AAA-A-AT------ATTTCACCATTTACCTT-G-AATTAAACGGCAATT-AGCCCAAGGAAAATTGC-TATGCATTTATAT-TAC---ATTTACATGTA--TTTGTATT-TGTGTGCATAATCCACTTGGTGAACt
gi|24 : TTTTATTTTATAC--CTCAT------T--ATTT-AATTGTGCATGATACATC---T-TA----TG-GA-A-CA------C-----GAATCATT----TGTT--CAATCTTTTG-TTTTCCA---ATCATGAAGAAAAGTAGCTTCAG----------AAA-A-AG-----TATTACACCATCGATATT-G-AATCAAACAGCAAGTCAGC-----GAAATTTGTGTA------CACATGTATTTAATT------TA--TTAGTATG-TGTGTATAAAATGCACTCTGTGTACctga
gi|25 : catttttAT----TATTTTATTTTATAC--CTCAT------T--ATTT-AATTGTGCATGATACATC---T-TA----TG-GA-A-CA------C-----GAATCATT----TGTT--CAATC-TTTGATTTTCCA---ATCATGAAGAAAAGTAGCTTCAG----------AAA-A-AG-----TATTACACCATCGATATT-G-AATCAAACAGCAAGTCAGC-----GAAATTTGTGTA------CACAT--GT---ATT------TACTTTATTAGTATGTGTGTATAAtt
gi|26 : aaccaT----AATTTGGTTTTATAT--GT-AG------A--AGTT-AATTGTACGTGAT-TATTC-GT-TT----T--AA-A-CA------C-----GAATCATT----TGTT--CAATCATTTG-TCATCCA---ATCATAAATTAAAGTAGCTTGAG----------GAA-A-AT-----TATTTCACCATTTCTCTT-A-AATCAAATGGCAAGT-AGCCCAAGGAAAATTCT-TA------TATAT-CCT---ATG------TA--TTAGTAAT-TGTCTGCATAATCCGCTCGGTGCACGTaatgcactatgtgta
gi|27 : TTTAT----AATTTGGTTTTATAT--GT-AT------A--AGTT-AATTGTACGTGAT-TATT---T-TT----TT-AA-A-CA------C-----GAATCATT----TGTA--CAATCATTTG-TCATCCA---ATCATAAAGCAAAGTAGCTT-AC----------GA-----------TATTTGATAATTAATCTT-G-AATCAAACGGCAATT-AGCCCAAGGAAAATTCT-TA------TATAT-CAT---ATG------TA--TTAGTAAT-TGTGTGCATAATCCGCTCAGTGCACtaca
gi|28 : taAT----AATTTTGTTTTATAT--GT-AC------A--AGTT-AACTGAACGTGAT-TAATC-TT-TT----T--AA-A-CT------C-----GAATCATT----TGTT--CAATCATTTG-TCATTCA---ATCATAAAGCAAAGTAGTTTGA-----------AAA-A-AT-----AA--TCACTATTTATCTT-C-AATCAAACGGCAAGA-AGCTCATGGAAAATCTT-TA------TATAT-TAC---GTT------TA---TAGTAAT-TGTGTGCACAATCCACTCGGTGCACGTctta
gi|29 : TAT----AATTTGGTTTTATAT--GG-AG------A--AGCA-AATTGTACGTGAT-TATTC-TT-TT-----T-AA-A-CA------C-----GAATCATT----TGTT--CAATCGTTTG-TCATCCA---GTCATAAAGCAAAGTAGCTTGAG----------GAA-A-AT-----TATTTCATCATATATCTT-A-AATCAAACGGCAAGT-AGT-------AAATTCT-TT------TATAT-TAC---ATT------TA--ATATTATC-AGTGTGCATAATCCGCTCGTTGCACGTtac
gi|3 : GTTTGAAACGTTAGTTCGA-AACCTTTAT----AATTTGGTTTTATAT--GT-A-------A--AGTT-AATTGTACGTGAT-TATTC-TT-TTTTTTTT-AA-A-CA------C-----GAATCATT----TGTT--CAATCATTTG-TCATCTA---ATCATAAAGCAAAGTAGCTTGAG----------GAA-A-AT-----TATTTCACCATTTATCTT-A-AATCAAACGGCAAGT-AGTCCAAGGAAAATTCA-TA------TATAT-CAT---ATA------TA--TTAGTAGT-TGTGTGCACAATCCGCTCGGTGCACGTt
gi|30 : gTTATAT--GT-AT------T--AGTT-AATGGTACGTGAT-TCTTC-TT-TT----T--AA-A-CA------T-----GAATCATT----TGTT--CAATCATTTG-TCATCCA---ATCATAAAGCACAGTAGCTTGAG----------AAA-A-AT-----TATTTCACCATTTATCTT-A-AATGAAACGGCAAGT-AGCCCTATGAAAATTCT-TA------TATAT-CAT---ATG------TA--CTAGTATT-CGTGTGCATAATCCGCTCGGTGCACGTtac
gi|31 : AT----AATTTGGTTTTATAT--GT-A-------A--AGTT-AATTGTACGTGAT-TATTC-TT-TT----TTTAA-A-CA------C-----GAATCATT----TGTT--CAATCATTTG-TCATCTA---ATCATCAAGCAAAGT-------------------------------TATTTCTCCATTTATCTT-A-AATCAAACGGCAAGT-AGTCCAAGGAAAATTCT-TG------TATAT-CAT---ATT------TA--TTAGTAGT-TGTGTGCACAATCCGCTCGGTGCACGTtac
gi|32 : GTCCGAAACATTAGTTCGA-AACCTTTAT----AATTTGGTTTTATAT--GT-AG------A--AGTTCAATCAT---TTGT-CATCC-AA-TC----AT-AA-AGCAAAGTAGCTTGAGGAA--AAT----TATT--TCACCATTTA-TC-TTGA---ATCAAACGGCAA--TAGCCCAAG----------GAA-A-AT-----TCTTtac
gi|32 : ttGTT--CAATCATTTG-TCATCCA---ATCATAAAGCAAAGTAGCTTGAG----------GAA-A-AT-----TATTTCACCATTTATCTT-G-AATCAAACGGCAA-T-AGCCCAAGGAAAATTCT-TA------TATAT-CAT---ATG------TA--TTAGTAAT-TGTGTGCATAATCCGCTAAGTGCACGTatatatcatatgtattagtaattgtgtgcataatccgctaagtgcacgttac
gi|33 : ttgtccgaaacattagttcgaaacctttataatttggttttatatgtagaaGTCCGAAACATTAGTTCGA-AACCTTTAT----AATTTGGTTTTATAT--GT-AG------A--AGTTCAATCAT---TTGT-CATCC-AA-TC----AT-AA-AGCAAAGTAGCTTGAGGAA--AAT----TATT--TCACCATTTA-TC-TTGA---ATCAAACGGCAA--TAGCCCAAG----------GAA-A-AT-----TCTTtac
gi|33 : ttGTT--CAATCATTTG-TCATCCA---ATCATAAAGCAAAGTAGCTTGAG----------GAA-A-AT-----TATTTCACCATTTATCTT-G-AATCAAACGGCAA-T-AGCCCAAGGAAAATTCT-TA------TATAT-CAT---ATG------TA--TTAGTAAT-TGTGTGCATAATCCGCTAAGTGCACGTatatatcatatgtattagtaattgtgtgcataatccgctaagtgcacgttac
gi|34 : ttgtccgaaacattagttcgaaacctttataatttggttttatatgtagaa-AACCTTTGT----AATTTGTTTTTATAT--TT-AT------T--AGTT-AATTGTACGTGAT-T---CGTT-TT----TT-AA-A-CA------C-----AAATCATT----TGAT--CAATCATTTG-TCAACCA---ATCATAAAGCGAAGTAGCTTGAGA---------GAA-ATAT-----TATTTCACCATTTATCTT-A-AATCAAACGGCAAGT-AGCCTA------------------------------------------A--TTAGTATG-TGTGTGCATAGTGCGCTCGGTGCACGTtac
gi|35 : CCTTTGT----AATTTGTTTTTATAT--TT-AT------T--AGTT-AATTGTACGTGAT-T---CGTT-TT----TT-AA-A-CA------C-----AAATCATT----TGAT--CAATCATTTG-TCAACCA---ATCATAAAGCGAAGTAGCTTGAGA---------GAA-ATAT-----TATTTCACCATTTATCTT-A-AATCAAACGGCAAGT-AGCCTA------------------------------------------A--TTAGTATG-TGTGTGCATAGTGCGCTCGGTGCACGTtac
gi|36 : ATTTTACGTGAT-TCTTC-TT-TT-------AA-A-CA------C-----GAATCATT----TGTT--CAATCATTTG-TCATCCA---GCCATAAAGCAAAGTAGCTTGAG----------GAA-A-AT-----TATTTTACCATTTATCTT-G-AATCAAACGGCAAGT-AGCCAAAGGAAAATTCT-TA------TGTAT-TGC---ATT------CA--TTAG----------------TCCGCTCGATGCACGTta
gi|37 : gtatttattGTTTGAAACGTTAGTTCGA-AACCTTTAT----AATTTGGTTTTATAT--GT-AG------A--AGTT-AATTGTACGTGAT-TATTC-TT-TT-----T-AA-A-CA------C-----GAAGCATT----TGTT--CAATCATTTG-TCATTCA---ATCAAAAAGCAAAGTAGCTTGAG----------GAA-A-AT-----TATTTCACCATTTATTTTAA-AATCAAACGtac
gi|38 : tttTTTGTTTGATAACCTGTAT--------TGCTTGTATGTTAGT-AT------T--AGCT-GATGGTGCATGGT-T-TTC-TT-TG----TA-AA-A-CA------A-----TAACGATT----AACT--CA-TTGTTTA-TAATCCG---ATCACGAAACAAAGTATC-TAAG----------GGA-A-AT-----GATTTCACTATCTATATT-AGAATCAACCG
gi|39 : TAGTTTGA-AACCTTAGT----AGTTTGGTTTTGTAT--GT-AT------T--AATT-AATTTTACGCGAT-T---C-TTATT----TT-AG-A-CA------C-----GAATCATTAAATTTTTAACAATCGTTTG-TCATCCA---ATCACAAAGCAGAGTAGCTTGAG----------AAA-A-A------TATTTCA
gi|4 : GTTTGAAACGTTAGTTCGA-AACCTTTTTTT--AATTTGGTTTTATAT--GT-AT------A--AGTT-AATTGTACGTGAT-TATTC-TT-TT----TT-AA-A-CA------C-----GAATCATT----TGTT--CAATCATTTG-TCATCCA---ATTATAAAGCAAAGTAGCTTGAG----------GAA-A-AT-----TATTTCACCATTTATCTT-A-AATCAAACGGCAAGT-AGTCCAAGGAAAATTCT-TT------TATAT-CAT---ATT------TA--TTAGTAGT-TGTGTGTACACGCCGCTCGGTGCACGT
gi|40 : ACCTTTAT----AATTTGGTTTTATAT--GT-AT------A--AGTT-AATGGTACGTGAT-TATTC-TT-TT-----T-AA-A-CA------C-----GAATCATT----TGTT--CAATCAGTAG-TCATCCA---TTCATAAAGCAAAGTAGCTTGAG----------GAA-A-AA-----TATTTCACCATTTATtac
gi|41 : T-AT------A--AGTT-GATTGGGCATGAT-GTCTC-GT-TG----CT-AAGA-CA------T-----GAATCATT----TATC--TAATCATTTG-TCATCTAATTATCATAAAATAAAGTAGTTTTAGCC--------AAA-A-ATATACATGTTTCATCATTGAT
gi|42 : tA--TTAGTATT-TGTGTGCATAATCGGCTCGGTGCACat
gi|43 : tcaaacagcaagtagccT-CAT---ATT------TA--TTAGTAGT-TGTGTGCATAATCCGCTCGGTGCACGTaataca
gi|5 : GTTTGAAACGTTAGT-CGA-AACCTTTAT----AATTTGGTTTTATAT--GT-AG------A--AGTT-AATTGTACGTGAT-TACTC-TT-TT----T--AA-A-CA------C-----GAATCATT----TGTT--TAATCATTTG-TCATCCA---ATCATAAAGCAAAGTAGCTTGAG----------GAA-A--T-----TATTTCACCATTTATCTT-A-AATCAAACGGCAAGT-AGCCCAAGGAAAATTCT-TA------TATAT-CAT---ATG------TA--TTAGTATT-TATGTGCACAAACCGCTCGGTGCACGTtac
gi|6 : cgtttTTCGAAACGTTAGTTTGA-AACCTTTGT----AATTTGGTTTTATAT--GT-AA------T--AGTT-AATTGTACGTGAT-TCTTA-TT-TT-----T-AA-A-CA------C-----GAATCATT----TGTT--CAATCATTTG-TCATCCA---ATCATAAAGTAAAGTAGCTTGAG----------AAA-A-AA-----TATTTCACCATTTATCTT-A-AATCAAACGACATGT-AGCCAAAGGATAATTCT-TA------TATAT-TAC---ATT------TA--TTAGTATT-TGTGTGCTTAGTCCGCTCGGTGCACGTta
gi|7 : GTTTGAAACGTTAGTTCGA-AACCTTTAT----AATTTGGTTTTATAT--GT-A-------A--AGTT-AATTGTACGTGAT-TAATC-TT-TT----TT-AA-A-CA------C-----GAATCATT----TGTT--CAATCATTTG-TCATCTA---ATCATAAAGCAAAGTAGCTTGAG----------GAA-A-AT-----TATTTCACCATTTATCTT-T-AATCAAACGGCAAGT-AGTCCAAGGAAAATTCT-TA------TATAT-CAT---ATT------TA--TTAGTAGT-TGTGTGCATAATCCGCTCGGTGCACGTtac
gi|8 : GTTTGAAACGTTAGTTCGA-AACCTTTAT----AATTTGGTTTTAAAT--GT-AT------A--AGTT-AATTGTACGTGAT-TATTC-TT-TT----TT-AA-A-CA------C-----GAATCATT----TGTT--CAATCATTTG-TCATCCA---ATCATAAAGCAAAGTAGCTTGAG----------GAA-A-AT-----TATTTCACCATTTATCTT-A-AATCAAACGGCAAGT-AGTCCAAGGAAAATTCT-TA------TATAT-CAT---ATT------TA--TTAGTAGT-TGTGTGCATAATCCGCTCGGTGCACGTta
gi|9 : ACGTTAGTTTGA-AACCATTGT----AATTTGGTTTTATGT--GT-ATTAGTTAATTAGTT-AATTGTACGTGAT-T------T-TT----TT-AA-A-CA------C-----GAATCATT----TGTT--CAATCATTTG-TTATCCA---ATCATAAAGCAAAGTAGCTTGAG----------AAA-A-AT-----TATTTCACCATTTATCTT-A-AATCAAACGGCAAGT-AGCCCAAGGAAAATTCT-TA------TATAT-CAT---ATC------TA--TTAGTAAT-TGTGTGCAATATCCGCTCGGTGCACGT
blockSeqs : T CTTT TA C TTAGTTAATT C A A G TTTTTT G AAGTAG TTGAG AAAT AA ATT AATAACTTGA T ATACA A G C G TGCATT G TTA TTACATG CT A A
blockSeqs : . TT . C GA C A A G TTT G AAGTAG TTGAG . . . CC T A . . C G T . . G . G .
blockSeqs : . . . . TA . . T . TT G . . . . . A . . . . . . . . . G . A .
blockSeqs : . . . . TC . . A . TT . . . . . . A . . . . . . . . . T . A .
blockSeqs : . . . . TA . . C . TG . . . . . . . . . . . . . . . . T . T .
blockSeqs : . . . . TT . . A . TG . . . . . . . . . . . . . . . . T . A .
blockSeqs : . . . . GA . . A . TT . . . . . . . . . . . . . . . . G . T .
blockSeqs : . . . . TA . . C . AT . . . . . . . . . . . . . . . . T . T .
blockSeqs : . . . . TT . . A . AT . . . . . . . . . . . . . . . . T . T .
blockSeqs : . . . . TA . . A . TT . . . . . . . . . . . . . . . . T . T .
blockSeqs : . . . . TT . . A . TT . . . . . . . . . . . . . . . . G . G .
blockSeqs : . . . . GA . . A . TA . . . . . . . . . . . . . . . . A . G .
blockSeqs : . . . . TA . . A . TT . . . . . . . . . . . . . . . . A . A .
blockSeqs : . . . . TC . . C . TT . . . . . . . . . . . . . . . . T . T .
blockSeqs : . . . . TT . . A . CT . . . . . . . . . . . . . . . . T . T .
blockSeqs : . . . . TT . . A . TT . . . . . . . . . . . . . . . . T . T .
blockSeqs : . . . . TT . . A . TT . . . . . . . . . . . . . . . . T . G .
blockSeqs : . . . . GA . . A . TT . . . . . . . . . . . . . . . . G . A .
blockSeqs : . . . . TA . . A . T . . . . . . . . . . . . . . . . G . A .
blockSeqs : . . . . CA . . A . T . . . . . . . . . . . . . . . . T . A .
blockSeqs : . . . . GA . . A . T . . . . . . . . . . . . . . . . T . T .
blockSeqs : . . . . TT . . C . T . . . . . . . . . . . . . . . . A . G .
blockSeqs : . . . . GA . . A . A . . . . . . . . . . . . . . . . G . T .
blockSeqs : . . . . GA . . A . A . . . . . . . . . . . . . . . . T . G .
blockSeqs : . . . . TT . . A . T . . . . . . . . . . . . . . . . G . A .
blockSeqs : . . . . TT . . C . T . . . . . . . . . . . . . . . . G . A .
blockSeqs : . . . GA . . A . T . . . . . . . . . . . . . . . . T . T .
blockSeqs : . . . TT . . A . T . . . . . . . . . . . . . . . . T . T .
blockSeqs : . . . TT . . A . T . . . . . . . . . . . . . . . . T . G .
blockSeqs : . . . TA . . T . T . . . . . . . . . . . . . . . . G . T .
blockSeqs : . . . TA . . A . T . . . . . . . . . . . . . . . . T . G .
blockSeqs : . . . TA . . C . T . . . . . . . . . . . . . . . . T . T .
blockSeqs : . . . GA . . A . T . . . . . . . . . . . . . . . . T . T .
blockSeqs : . . . AT . . A . T . . . . . . . . . . . . . . . . C . G .
blockSeqs : . . . TA . . . . T . . . . . . . . . . . . . . . . . . G .
blockSeqs : . . . A . . . . T . . . . . . . . . . . . . . . A .
blockSeqs : . . A . . . . T . . . . . . . . . . . . . .
blockSeqs : . . A . . . . . . . . . . . . . .
blockSeqs : . A . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqCons : ****
originalCons : GTTTGAAACGTTAGTTCGA-AACCTTTAT----AATTTGGTTTTATAT--GT-AT------A--AGTT-AATTGTACGTGAT-TATTC-TT-TT----TT-AA-A-CA------C-----GAATCATT----TGTT--CAATCATTTG-TCATCCA---ATCATAAAGCAAAGTAGCTTGAG----------GAA-A-AT-----TATTTCACCATTTATCTT-A-AATCAAACGGCAAGT-AGCCCAAGGAAAATTCT-TA------TATAT-CAT---ATT------TA--TTAGTANT-TGTGTGCATAATCCGCTCGGTGCACGT
finalCons : GTTTGAAACGTTAGTTCGA-AACCTTTAT----AATTTGGTTTTATAT--GT-AT------A--AGTT-AATTGTACGTGAT-TATTC-TT-TT----TT-AA-A-CA------C-----GAATCATT----TGTT--CAATCATTTG-TCATCCA---ATCATAAAGCAAAGTAGCTTGAG----------GAA-A-AT-----TATTTCACCATTTATCTT-A-AATCAAACGGCAAGT-AGCCCAAGGAAAATTCT-TA------TATAT-CAT---ATT------TA--TTAGTANT-TGTGTGCATAATCCGCTCGGTGCACGT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|44 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTT
Alignments
lowQualScore : 1111111
lowQualScore : 1 6666 11 2 7777777777 2 2 3 2 1 8888888 1 2 555555 44444 2222 11 0 111 7777777777 0 1 33333 1 1 2 2 444444 1 111 5555555 11 1 1
lowQualScore : . .... .. . .......... . . . . . ....... . . ...... ..... .... .. . ... .......... . . ..... . . . . ...... . ... ....... .. . .
lowQualScore : 5 1111 44 0 2222222222 0 0 0 0 0 4444444 0 9 666666 99999 1111 33 9 666 2222222222 9 9 33333 1 1 2 2 333333 1 999 1111111 44 4 1
consensus : GTTTGAAACGTTAGTTCGA-AACCTTTAT----AATTTGGTTTTATAT--GT-AT------A--AGTT-AATTGTACGTGAT-TATTC-TT-TT----TT-AA-A-CA------C-----GAATCATT----TGTT--CAATCATTTG-TCATCCA---ATCATAAAGCAAAGTAGCTTGAG----------GAA-A-AT-----TATTTCACCATTTATCTT-A-AATCAAACGGCAAGT-AGCCCAAGGAAAATTCT-TA------TATAT-CAT---ATT------TA--TTAGTANT-TGTGTGCATAATCCGCTCGGTGCACGT
Reference ( family-5468 ) : GTTTGAAACGTTAGTTCGA-AACCTTTAT----AATTTGGTTTTATAT--GT-AT------A--AGTT-AATTGTACGTGAT-TATTC-TT-TT----TT-AA-A-CA------C-----GAATCATT----TGTT--CAATCATTTG-TCATCCA---ATCATAAAGCAAAGTAGCTTGAG----------GAA-A-AT-----TATTTCACCATTTATCTT-A-AATCAAACGGCAAGT-AGCCCAAGGAAAATTCT-TA------TATAT-CAT---ATT------TA--TTAGTANT-TGTGTGCATAATCCGCTCGGTGCACGT
gi|1 : GTTTGAAACGTTAGTTCGA-AACCTTTTTTTTAAATTTGGTTTTATAT--GT-AG------A--AGTT-AATTGTACGTGAT-TATTC-TT-TT-----T-AA-A-CA------C-----GAATCATT----TGTT--CAATCATTTG-TCATCCA---ATCATAAAGCAAAGTAGCTTGAG----------GAA-A-AT-----TATTTCACCATTTATCTT-A-AATCAAACGGCAAGT-AGCCCAAGGAAAATTCA-TA------TATAT-CAT---ATA------TA--TTAGTAGT-TGTGTGCATAATCTGCTCGGTGCACGT
gi|10 : gtttTGAAACGTTAGTTCGA-AACCTTTGT----AATTTGGTTTTATAT--GT-AG------A--AATT-AATTGTACGTGAT-TATTA-TT-TT-----T-AA-A-CA------C-----GAATCATT----TATT--CAATCATTTG-TCATCCA---ATCATAAAGCAAAGTAGCTTGAG----------GAA-A-AT-----TATTTCAACATTTATCTT-A-AATCAAACGGCAAGT-AGCCCAAGGAAAATTCT-TA------TATAT-CAT---ATG------TA--TGAGTAAT-TGTGTGCATAATCCGCTCGGTGCACGTtac
gi|11 : TTGAAACGTTAGTTCGA-AACCTTTAT----AATTTGGTTTTATAT--GT-AT------A--AGTT-AATTGTACGTGAT-TATTC-TT-TT-----T-AA-A-CA------C-----GAATCATT----TGTT--CAATCATTTG-TCATCCA---ATTATAAAGCAAAGTAGCTTGAG----------GAA-A-AT-----TATTTCACCATTTATCTT---AATCAAACGGCAAGT-AGTCCAAGGAAAATTCT-TA------TATAT-CAT---ATG------TA--TTAGTAGT-TGTGTGCATAAACCGCTCGGTGCACGTta
gi|12 : AAACGCTAGTTCGA-AATCTTTAT----AATTTGGTTTTATAT--GT-AT------C--AGTT-AACTGTACGTGAG-TTTTC-TT-TT-----T-AA-A-CA------C-----GAATCATG----TGTC--CAATCATTTG-TCATTCA---ATCATAAAGCAAAGTAGCTTGAG----------AAA-A-AT-----TATTTCACTATTAATCTT-A-AATCAAACGGCAAGT-AACTCAAGGAAAATTCT-TA------TATAT-TGC---ATT------TA--TTACTAAG-TGTGTGCATAATTCGCTCGGTGCACc
gi|13 : AAACGTTAGTTCGA-A-CTTTTAT----AATTTGGTTTTATAG--GT-AT------A--AGTT-AATTGTACGTGAT-TATTC-TT-TT----T--AA-A-CA------C-----GAATCATT----TGTT--CAATAGTTTG-TCATACA---ATCATAAAGCAAAGTAGCTTGAA-----------AA-A-AT-----TATTCCACTATTTATCTT-A-AATCAAACGGCAAGT-AGCCCAATGAAAATTCT-TA------TATAT-TGC---ATT------TA--TTAGTAAT-TGTGTGCATACTCCGCTCGGTGCACGttta
gi|14 : -AACCTTTGT----GATTTGGTTTTATAT--GT-GT------T--AGTT-AATTGTAAGTGAT-TCTTC-TT-TT-------AG-G-CA------C-----GAATCATT----TGAT--CAATCACTTG-TCATCCA---ATCATAAATGAAAGTAACTTGAGAATAACTTGAGAACA-AT-----TATTTCATCATTTATCTT-G-AACCAAACGGCAAGT-AGCCCAAGGAAAATTGT-TAT-----TTTTT-TAT---ATT------TA--TTAGTATT-TGTGCGCATAATCCGCTCGGTGCACGTctac
gi|15 : CATTTGTTTGA-AACCTTTAT----AATTTGGTTTTATAT--GT-AG------A--AGTT-AATTTTACGTGAT-TATTC-TT-TT----A--AA-A-CA------C-----GAATCATT----TGTT--CAATCATTTG-TCATCCA---ATCATAAAGCAAAGTAGCTTGAG----------GAA-A-AT-----TATTTCACCATTTCTCTT-A-AATCAAACGGCAAGT-AGCCCAAGGAAAACTCT-TA------TATAT-CAT---ATG------TA--TTAGTAAT-TGTGTGCATAATCCGCTCGGTGCACGTtac
gi|16 : AGTTCGA-AACCTTCAT----AATTTGGTTTAATAT--GT-AT------A--AGTT-AATTGTACGTGAT-TATTC-TT-TT----A--AA-A-CA------C-----GAATCAAT----TGTT--CAATCGTTTG-TCATCCA---ATCATAAAGCAAAGTAGCTTGCG----------AAA-A-AT-----TATTTCACCATTTATCTT-A-AATCAAACGGCAAGT-AGCCCAAGGAAAATTCT-AA------TATAT-TAC---ATT------TA--ATATTATC-AGTGTGCATAATCCGCTCGGTGCACGTt
gi|17 : AGTTTGA-AACCTTTGT----AATTTGGTTTTATAT--GT-AT------T--AGTT-AATTGTACGTGAT-TCTTC-TT-TT----T--AA-A-CA------C-----GAATCATT----TGTT--CAATCAATTG-TCATCCA---ATAATAAAGCAAAGTAGTTTGAG----------AAA-A-AT-----TATTTCACTATT-ATCTT-A-AATCAAACGGAAAGT-AGCCCAAGGGAAATTCT-TA------TATAC-AAT---ATT------TA--TTAGTATG-TGTGTGAACAATCCGTTCGGTGCACGTta
gi|18 : TCGA-AACCTTTAT----AATTTGGTTTTATAT--GT-AT------A--GGTT-AATTGTACATGAT-TATTC-TT-TT-----T-AA-A-CA------C-----GAATCATT----TGTT--CAATCATTTG-TCATCCA---ATCATAAAGCAAAGTAGCTTGAG----------AAA-A-AC-----TATTTCACCATTTATCTT-A-AATCAAACGGCAAGT-AGCCCAAGGAAAATTCT-TA------TATAT-CAT---ATT------TA--TTAGTATT-TGTGTGCATAATCCGCTCGGTGCACGTtac
gi|19 : CGTTAGTTTGA-ATACTTTGT----GATTTGGTTTTATAT--TC-AT------T--AGTT-AATTTTACGTGAT-TATTC-TG-T--------AA-GGCA------C-----GAATCATG----TGTT--CAATCATTTC-TCATCCA---ATCATAAAGCAAAGATGCTTGGG----------AAA-A-AAA----TATTTCACCATTTATCTT-G-AATCAAATGGCAAAT-AGCCAAAGGAAAAGTCA-TA------TGCAT-TGC---ATG------TA--TTAGTATT-TGTGTACATAATCCGCTTGGTGtac
gi|2 : GTTTGAAATGTTAGTTCGA-AACCTTTTTCTTTAATTTAGTTTTATAT--GT-AG------A--AGTT-AATTGTACGTGAT-TATTC-TT-TT-----T-AA-A-CA------C-----GAATCATT----TGTT--CAATCATTTG-TCATCCA---ATCATAAAGCAAAGTAGCTTGAG----------GAA-A-AT-----TATTTCACTATTTATCTT-A-AATCAAACGGCAGGT-AGCCCAAGGAAAATTCA-TA------TATAT-CAT---ATA------TA--TAAGTAGT-TGTGTGCATAATCCGCTCGGTGCACGTa
gi|20 : tttAAACGTTAGTTCGA-AACCTTTAT----AATTTGGTTTTATAT--GT-A-------A--AGTT-AATTGTACGTGAT-TATTC-TT-TT----TT-AA-A-CA------C-----GAATC------------------ATTTG-TCATCTA---ATCATAAAGCAAAGTAGTTTGAG----------GAA-A-AT-----TATTTCACCATTTATCTT-A-AATCAAACGGCAAGT-AGTCCAAGGAAAATTCA-TA------TATAT-CAT---ATA------TA--TTAGTAGT-TGTGTGCATAAACCGCTCGGTGCACGTta
gi|21 : TCGA-A-CTTTTAT----AATTTGGTTTTATAT--GT-AT------A--AGTT-AATTGTACGTGAT-TATTC-TT-TT----T--AA-A-CA------C-----GAATCATT----TGTT--CAATCGTTTG-TCATACA---ATCATAAAGCAAAGTAGCTTGAA-----------AA-A-AT-----TATTCCACTATTTATCTT-A-AATCAAACGGCAAGT-AGCCCAATGAAAATTCT-TA------TATAT-TGC---ATT------TA--TAAGTAAT-TGTGTGCATAATCCACTCGGTGCACGta
gi|22 : ACCTTTGT----AATTTGGTTTTATAT--GT-AT------C--AGTT-AACTGTATGTGAT-TCTTC-TT-TT-----T-AA-A-CA------C-----AAATCATT----TGTT--TTACCATTTG-TCATCAA---ATCATCAAGTAAAGTACCTTGAG----------AAA-A-AA-----TATGTCACCATTTATCTT-G-AATCAAATGACAAGT-TGTCCAGGGAAAATAAT-TT------TATAT-TAC---ATT------TA--TTAGTATT-TGTGTACATAATCCGATCGGTGCACGTcta
gi|23 : ACCTTTGT----AATTTAGTTTTATAT--TT-AT------T--AGTT-AATTGTAAGTGAC-T-TTT-GT-TT----TT-AA-A------------------------------T--CAATCATTTG-TCATCCA---ATCGTAAAGCAATGCAGCTTAAG----------AAA-A-AT------ATTTCACCATTTACCTT-G-AATTAAACGGCAATT-AGCCCAAGGAAAATTGC-TATGCATTTATAT-TAC---ATTTACATGTA--TTTGTATT-TGTGTGCATAATCCACTTGGTGAACt
gi|24 : TTTTATTTTATAC--CTCAT------T--ATTT-AATTGTGCATGATACATC---T-TA----TG-GA-A-CA------C-----GAATCATT----TGTT--CAATCTTTTG-TTTTCCA---ATCATGAAGAAAAGTAGCTTCAG----------AAA-A-AG-----TATTACACCATCGATATT-G-AATCAAACAGCAAGTCAGC-----GAAATTTGTGTA------CACATGTATTTAATT------TA--TTAGTATG-TGTGTATAAAATGCACTCTGTGTACctga
gi|25 : catttttAT----TATTTTATTTTATAC--CTCAT------T--ATTT-AATTGTGCATGATACATC---T-TA----TG-GA-A-CA------C-----GAATCATT----TGTT--CAATC-TTTGATTTTCCA---ATCATGAAGAAAAGTAGCTTCAG----------AAA-A-AG-----TATTACACCATCGATATT-G-AATCAAACAGCAAGTCAGC-----GAAATTTGTGTA------CACAT--GT---ATT------TACTTTATTAGTATGTGTGTATAAtt
gi|26 : aaccaT----AATTTGGTTTTATAT--GT-AG------A--AGTT-AATTGTACGTGAT-TATTC-GT-TT----T--AA-A-CA------C-----GAATCATT----TGTT--CAATCATTTG-TCATCCA---ATCATAAATTAAAGTAGCTTGAG----------GAA-A-AT-----TATTTCACCATTTCTCTT-A-AATCAAATGGCAAGT-AGCCCAAGGAAAATTCT-TA------TATAT-CCT---ATG------TA--TTAGTAAT-TGTCTGCATAATCCGCTCGGTGCACGTaatgcactatgtgta
gi|27 : TTTAT----AATTTGGTTTTATAT--GT-AT------A--AGTT-AATTGTACGTGAT-TATT---T-TT----TT-AA-A-CA------C-----GAATCATT----TGTA--CAATCATTTG-TCATCCA---ATCATAAAGCAAAGTAGCTT-AC----------GA-----------TATTTGATAATTAATCTT-G-AATCAAACGGCAATT-AGCCCAAGGAAAATTCT-TA------TATAT-CAT---ATG------TA--TTAGTAAT-TGTGTGCATAATCCGCTCAGTGCACtaca
gi|28 : taAT----AATTTTGTTTTATAT--GT-AC------A--AGTT-AACTGAACGTGAT-TAATC-TT-TT----T--AA-A-CT------C-----GAATCATT----TGTT--CAATCATTTG-TCATTCA---ATCATAAAGCAAAGTAGTTTGA-----------AAA-A-AT-----AA--TCACTATTTATCTT-C-AATCAAACGGCAAGA-AGCTCATGGAAAATCTT-TA------TATAT-TAC---GTT------TA---TAGTAAT-TGTGTGCACAATCCACTCGGTGCACGTctta
gi|29 : TAT----AATTTGGTTTTATAT--GG-AG------A--AGCA-AATTGTACGTGAT-TATTC-TT-TT-----T-AA-A-CA------C-----GAATCATT----TGTT--CAATCGTTTG-TCATCCA---GTCATAAAGCAAAGTAGCTTGAG----------GAA-A-AT-----TATTTCATCATATATCTT-A-AATCAAACGGCAAGT-AGT-------AAATTCT-TT------TATAT-TAC---ATT------TA--ATATTATC-AGTGTGCATAATCCGCTCGTTGCACGTtac
gi|3 : GTTTGAAACGTTAGTTCGA-AACCTTTAT----AATTTGGTTTTATAT--GT-A-------A--AGTT-AATTGTACGTGAT-TATTC-TT-TTTTTTTT-AA-A-CA------C-----GAATCATT----TGTT--CAATCATTTG-TCATCTA---ATCATAAAGCAAAGTAGCTTGAG----------GAA-A-AT-----TATTTCACCATTTATCTT-A-AATCAAACGGCAAGT-AGTCCAAGGAAAATTCA-TA------TATAT-CAT---ATA------TA--TTAGTAGT-TGTGTGCACAATCCGCTCGGTGCACGTt
gi|30 : gTTATAT--GT-AT------T--AGTT-AATGGTACGTGAT-TCTTC-TT-TT----T--AA-A-CA------T-----GAATCATT----TGTT--CAATCATTTG-TCATCCA---ATCATAAAGCACAGTAGCTTGAG----------AAA-A-AT-----TATTTCACCATTTATCTT-A-AATGAAACGGCAAGT-AGCCCTATGAAAATTCT-TA------TATAT-CAT---ATG------TA--CTAGTATT-CGTGTGCATAATCCGCTCGGTGCACGTtac
gi|31 : AT----AATTTGGTTTTATAT--GT-A-------A--AGTT-AATTGTACGTGAT-TATTC-TT-TT----TTTAA-A-CA------C-----GAATCATT----TGTT--CAATCATTTG-TCATCTA---ATCATCAAGCAAAGT-------------------------------TATTTCTCCATTTATCTT-A-AATCAAACGGCAAGT-AGTCCAAGGAAAATTCT-TG------TATAT-CAT---ATT------TA--TTAGTAGT-TGTGTGCACAATCCGCTCGGTGCACGTtac
gi|32 : GTCCGAAACATTAGTTCGA-AACCTTTAT----AATTTGGTTTTATAT--GT-AG------A--AGTTCAATCAT---TTGT-CATCC-AA-TC----AT-AA-AGCAAAGTAGCTTGAGGAA--AAT----TATT--TCACCATTTA-TC-TTGA---ATCAAACGGCAA--TAGCCCAAG----------GAA-A-AT-----TCTTtac
gi|32 : ttGTT--CAATCATTTG-TCATCCA---ATCATAAAGCAAAGTAGCTTGAG----------GAA-A-AT-----TATTTCACCATTTATCTT-G-AATCAAACGGCAA-T-AGCCCAAGGAAAATTCT-TA------TATAT-CAT---ATG------TA--TTAGTAAT-TGTGTGCATAATCCGCTAAGTGCACGTatatatcatatgtattagtaattgtgtgcataatccgctaagtgcacgttac
gi|33 : ttgtccgaaacattagttcgaaacctttataatttggttttatatgtagaaGTCCGAAACATTAGTTCGA-AACCTTTAT----AATTTGGTTTTATAT--GT-AG------A--AGTTCAATCAT---TTGT-CATCC-AA-TC----AT-AA-AGCAAAGTAGCTTGAGGAA--AAT----TATT--TCACCATTTA-TC-TTGA---ATCAAACGGCAA--TAGCCCAAG----------GAA-A-AT-----TCTTtac
gi|33 : ttGTT--CAATCATTTG-TCATCCA---ATCATAAAGCAAAGTAGCTTGAG----------GAA-A-AT-----TATTTCACCATTTATCTT-G-AATCAAACGGCAA-T-AGCCCAAGGAAAATTCT-TA------TATAT-CAT---ATG------TA--TTAGTAAT-TGTGTGCATAATCCGCTAAGTGCACGTatatatcatatgtattagtaattgtgtgcataatccgctaagtgcacgttac
gi|34 : ttgtccgaaacattagttcgaaacctttataatttggttttatatgtagaa-AACCTTTGT----AATTTGTTTTTATAT--TT-AT------T--AGTT-AATTGTACGTGAT-T---CGTT-TT----TT-AA-A-CA------C-----AAATCATT----TGAT--CAATCATTTG-TCAACCA---ATCATAAAGCGAAGTAGCTTGAGA---------GAA-ATAT-----TATTTCACCATTTATCTT-A-AATCAAACGGCAAGT-AGCCTA------------------------------------------A--TTAGTATG-TGTGTGCATAGTGCGCTCGGTGCACGTtac
gi|35 : CCTTTGT----AATTTGTTTTTATAT--TT-AT------T--AGTT-AATTGTACGTGAT-T---CGTT-TT----TT-AA-A-CA------C-----AAATCATT----TGAT--CAATCATTTG-TCAACCA---ATCATAAAGCGAAGTAGCTTGAGA---------GAA-ATAT-----TATTTCACCATTTATCTT-A-AATCAAACGGCAAGT-AGCCTA------------------------------------------A--TTAGTATG-TGTGTGCATAGTGCGCTCGGTGCACGTtac
gi|36 : ATTTTACGTGAT-TCTTC-TT-TT-------AA-A-CA------C-----GAATCATT----TGTT--CAATCATTTG-TCATCCA---GCCATAAAGCAAAGTAGCTTGAG----------GAA-A-AT-----TATTTTACCATTTATCTT-G-AATCAAACGGCAAGT-AGCCAAAGGAAAATTCT-TA------TGTAT-TGC---ATT------CA--TTAG----------------TCCGCTCGATGCACGTta
gi|37 : gtatttattGTTTGAAACGTTAGTTCGA-AACCTTTAT----AATTTGGTTTTATAT--GT-AG------A--AGTT-AATTGTACGTGAT-TATTC-TT-TT-----T-AA-A-CA------C-----GAAGCATT----TGTT--CAATCATTTG-TCATTCA---ATCAAAAAGCAAAGTAGCTTGAG----------GAA-A-AT-----TATTTCACCATTTATTTTAA-AATCAAACGtac
gi|38 : tttTTTGTTTGATAACCTGTAT--------TGCTTGTATGTTAGT-AT------T--AGCT-GATGGTGCATGGT-T-TTC-TT-TG----TA-AA-A-CA------A-----TAACGATT----AACT--CA-TTGTTTA-TAATCCG---ATCACGAAACAAAGTATC-TAAG----------GGA-A-AT-----GATTTCACTATCTATATT-AGAATCAACCG
gi|39 : TAGTTTGA-AACCTTAGT----AGTTTGGTTTTGTAT--GT-AT------T--AATT-AATTTTACGCGAT-T---C-TTATT----TT-AG-A-CA------C-----GAATCATTAAATTTTTAACAATCGTTTG-TCATCCA---ATCACAAAGCAGAGTAGCTTGAG----------AAA-A-A------TATTTCA
gi|4 : GTTTGAAACGTTAGTTCGA-AACCTTTTTTT--AATTTGGTTTTATAT--GT-AT------A--AGTT-AATTGTACGTGAT-TATTC-TT-TT----TT-AA-A-CA------C-----GAATCATT----TGTT--CAATCATTTG-TCATCCA---ATTATAAAGCAAAGTAGCTTGAG----------GAA-A-AT-----TATTTCACCATTTATCTT-A-AATCAAACGGCAAGT-AGTCCAAGGAAAATTCT-TT------TATAT-CAT---ATT------TA--TTAGTAGT-TGTGTGTACACGCCGCTCGGTGCACGT
gi|40 : ACCTTTAT----AATTTGGTTTTATAT--GT-AT------A--AGTT-AATGGTACGTGAT-TATTC-TT-TT-----T-AA-A-CA------C-----GAATCATT----TGTT--CAATCAGTAG-TCATCCA---TTCATAAAGCAAAGTAGCTTGAG----------GAA-A-AA-----TATTTCACCATTTATtac
gi|41 : T-AT------A--AGTT-GATTGGGCATGAT-GTCTC-GT-TG----CT-AAGA-CA------T-----GAATCATT----TATC--TAATCATTTG-TCATCTAATTATCATAAAATAAAGTAGTTTTAGCC--------AAA-A-ATATACATGTTTCATCATTGAT
gi|42 : tA--TTAGTATT-TGTGTGCATAATCGGCTCGGTGCACat
gi|43 : tcaaacagcaagtagccT-CAT---ATT------TA--TTAGTAGT-TGTGTGCATAATCCGCTCGGTGCACGTaataca
gi|5 : GTTTGAAACGTTAGT-CGA-AACCTTTAT----AATTTGGTTTTATAT--GT-AG------A--AGTT-AATTGTACGTGAT-TACTC-TT-TT----T--AA-A-CA------C-----GAATCATT----TGTT--TAATCATTTG-TCATCCA---ATCATAAAGCAAAGTAGCTTGAG----------GAA-A--T-----TATTTCACCATTTATCTT-A-AATCAAACGGCAAGT-AGCCCAAGGAAAATTCT-TA------TATAT-CAT---ATG------TA--TTAGTATT-TATGTGCACAAACCGCTCGGTGCACGTtac
gi|6 : cgtttTTCGAAACGTTAGTTTGA-AACCTTTGT----AATTTGGTTTTATAT--GT-AA------T--AGTT-AATTGTACGTGAT-TCTTA-TT-TT-----T-AA-A-CA------C-----GAATCATT----TGTT--CAATCATTTG-TCATCCA---ATCATAAAGTAAAGTAGCTTGAG----------AAA-A-AA-----TATTTCACCATTTATCTT-A-AATCAAACGACATGT-AGCCAAAGGATAATTCT-TA------TATAT-TAC---ATT------TA--TTAGTATT-TGTGTGCTTAGTCCGCTCGGTGCACGTta
gi|7 : GTTTGAAACGTTAGTTCGA-AACCTTTAT----AATTTGGTTTTATAT--GT-A-------A--AGTT-AATTGTACGTGAT-TAATC-TT-TT----TT-AA-A-CA------C-----GAATCATT----TGTT--CAATCATTTG-TCATCTA---ATCATAAAGCAAAGTAGCTTGAG----------GAA-A-AT-----TATTTCACCATTTATCTT-T-AATCAAACGGCAAGT-AGTCCAAGGAAAATTCT-TA------TATAT-CAT---ATT------TA--TTAGTAGT-TGTGTGCATAATCCGCTCGGTGCACGTtac
gi|8 : GTTTGAAACGTTAGTTCGA-AACCTTTAT----AATTTGGTTTTAAAT--GT-AT------A--AGTT-AATTGTACGTGAT-TATTC-TT-TT----TT-AA-A-CA------C-----GAATCATT----TGTT--CAATCATTTG-TCATCCA---ATCATAAAGCAAAGTAGCTTGAG----------GAA-A-AT-----TATTTCACCATTTATCTT-A-AATCAAACGGCAAGT-AGTCCAAGGAAAATTCT-TA------TATAT-CAT---ATT------TA--TTAGTAGT-TGTGTGCATAATCCGCTCGGTGCACGTta
gi|9 : ACGTTAGTTTGA-AACCATTGT----AATTTGGTTTTATGT--GT-ATTAGTTAATTAGTT-AATTGTACGTGAT-T------T-TT----TT-AA-A-CA------C-----GAATCATT----TGTT--CAATCATTTG-TTATCCA---ATCATAAAGCAAAGTAGCTTGAG----------AAA-A-AT-----TATTTCACCATTTATCTT-A-AATCAAACGGCAAGT-AGCCCAAGGAAAATTCT-TA------TATAT-CAT---ATC------TA--TTAGTAAT-TGTGTGCAATATCCGCTCGGTGCACGT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|44 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTT