lowQualScore : 222222222222222222222222222 1111111111111111111111111111111111111
lowQualScore : 1 44444 3333 33 1 222 33 1 222 22 444444444444444444444444444 1 777 11 444 111111111111 0000000000000000000000000000000000000 11 222 222222 1 11 222 111111 444444444444444 11 22222222222 222222 11111 7777777777777777777777 111
lowQualScore : 5 6 44444 8888 6 6 6 00 6 7 6 111 6 22 5 333 33 6 444444444444444444444444444 6 5 000 6 6 99 6 111 555 2 6 888888888888 8888888888888888888888888888888888888 2 6 3 6 44 3 6 777 0 333333 1 3 7 6 11 888 3 444444 6 777777777777777 99 44444444444 777777 777 44444 0 33 22 5 2222222222222222222222 66 5 9 777 8 6
lowQualScore : . . ..... .... . . . .. . . . ... . .. . ... .. . ........................... . . ... . . .. . ... ... . . ............ ..................................... . . . . .. . . ... . ...... . . . . .. ... . ...... . ............... .. ........... ...... ... ..... . .. .. . ...................... .. . . ... . .
lowQualScore : 0 0 00000 0000 0 0 0 00 0 0 0 000 0 00 0 000 00 0 000000000000000000000000000 0 0 000 0 0 00 0 555 000 5 0 555555555555 0000000000000000000000000000000000000 2 0 2 0 22 2 5 000 8 000000 0 0 0 0 00 222 0 000000 0 666666666666666 00 00000000000 555555 222 66666 8 88 00 5 1111111111111111111111 11 8 4 666 3 0
consensus : AAAGTAGAAAGAATACAGAGGACAGCATCTAGATATGTTCTCAATAATTACGACTTCACAAGCAGTGTCACCCAAACATATCAAATCTTAAACTGGCAAACTCTCCATCAAAGAAGAATAATTTCATCACTAATACTACTTTTTAAAATAAAAAACAACCTAGT-----TGCTGTAGATCACCTCCATTTAATCCCAANAAAAATTCTGAAATTTTCANGNACNTTTTTCNCGGACNCNNNNTCATT----------CTTCCCTAGAAC------AACC-GAAATTGGAATAGCCTACCAAGTTGTGTTAAAGCCAGTACCAGCCTAAATCAGTTTATG------GCTGGTCTGGCCACAGTAAAATTCTAAA--CAANTCTCGTTTTTAACACTAG-AAATGTAGTNA---TGTT-TN--AAT-GAAA----AT-ATATGTATAGCTTTGTTGTTT-----TT--AAA--C--CATATTTCATTTTTTACTATTTACTNTTNCT-TTGCT----GCTCCCCGAC--AGCGCCTCCCAGTAATAATCAGAAATTGATTGTTGGGAGT--AATATGTATGT
Reference ( gi|3 ) : AAAGTCGAAAGAATACAGAGGGCA-CAATTAGATATGTAATAAATGATTACGGCTTCACAAACAGTGTCACAAAAATATTTCAAATTTTAAAATTGCAAACCCAACATCAAATAAGAATAAATGCATCACTAATTTTGCTTT----------ACACAATTTACTTTACATGCTATATATCA---CCGTTTAATTCCAATCAAAACTCTTAGATTTTCATGTACCTTTTCCTTGAATCCTATATCATCA---------CTTTTCTAGGAC------AA------ATTGGAATAGCCTACCAAGTTATGTCAAAGTCAATACCAGCATCAATCAGTTTATG------GCTGGTCTGGTCTCAGTAAAATTCTGAA--CAAAGCTCATTTTTAATAATGA-AAATGCAGTAA---TGTT-TT--AAT-TAAA----AT-ACAAGTATAGCTTTGTTGTTG-----TT--AAA--C--CATATTTCATTTTTTACTATTCACTATTACTACTCCT----ACTCCCCGAC--AGCGCCTCCCAGTAATAGTCAGAAATTGATTGTTTGGAGT--TATTTGTATAT
gi|1 : AAAGTAGAAAGAATACAGAGGACAGCATCTAGATATGTTCTCAATAATTACGACTTCACAAGCAGTGTCACCCAAACATATCAAATCTTAAACTGGCAAACTCTCCATCAAAGAAGAATAATTTCATCACTAATACTACTTTTTAAAATAAAAAACAACCTAGT-----TGCTGTAGATCACCTCCATTTAATCCCAATAAAAATTCTGA-ATTTTCAGGTACATTTTTCACAGACACAAACTCATT----------CTTCCCTAGAACAATTAGAA------ATTGGAATAGCATACCAGGTTGCGTTAAACCCAGTACCAGCCGAAATCAGTTTATG------GCTGGACTGGCCACAGCAAAATTCTAAA--CAAGTCTTGTATTTTACACTAG-AAATGTAGTTA---T-TT-TT--A
gi|4 : aacaaagaaaatgctcatttctgcggaaaattccaaacaacaagcttattaatacagacactcagccacgattttaattcctcaacccaaactgtatagacaatataacatcaaaagcaaacaatacccttaaattcattaaaattaatatacaaacaaataataaaaagataaaagaaacatcctacgacacatgtgtgagacaataaatagaatactgttcgtccctggcaaaagacacaaacatacCCAAAAAAAATTCT-AAATTTTCATAAACCTTTTTCTCGGACCCTTTATCATCAGAACTCATTCTTTCTTAGAAC------AACCTGAAATTGAAATAGCCTACCAAGTTGTGTTAAAGCCATTACCAGCCTAAATCAGTTTACC------GCTAGTCTGGCAACAGTAAAATTCTAAA--CAGGTGTTGTTTTTAATGCTGG-AAATGTAGGGG---GGTTGGG--AAT-GAAA----AT-ATATGTATAGCTTTGTTGTTGTTTTTTT--TAA--C--CATATTTCA-TTTTTATTATT---TATT----TTGCT----GTTCCCCGACAGAGAGTCTCCCAGTAATAATCAGAATTTGAGTGTTGGAAGT--AATATGT
gi|5 : TCATT----------CTTCCCTAGAAC------AATTAGAAATTTGAATAGCCTACCAAGTTGTGTTAAAGCCAGCACCAACCTAAATTAGTTTATG------GTTGGTCTGGCCACAGTAAATTTCTAAA--CAACTCTTGTTTTTAACACTAG-ACATGTAGTTA---TTTT-TA--AAT-GAAA----AT-ATATGTATAACTTTGTTGTTT-----TT--AAATTC--CATATATCATATTTCATTTTTTACTATTTCTTTTGCT----GTTCCCCGAT--AGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNTTTGTATG
gi|7 : tatcagaacTACTAAGTTATGGTAA-GCC--T-CCA-C-TCAGCCAGTTT---------GCTA--CTAGCCACAAAGACATTCTAAAATCAG-GTCCGTTTGTAATAATAG-TAATGTAGTG-----GTA-TA--AATATAAACATTATTATA--TATAGATTT--CATT------TC--AAA--C--CATTCTTC--TTTTTGTT-TTAGCTGTT---------------TCCCCAAC--AGCGCCTCCCACTTATAACCAGAAATTGATTATatat
gi|6 : AATCGGATTATGTAAACAGCTGGTCTGGTCACAATCAAATTTTAAA--TAATTTCCATTTTTAAC-ATAAGAAATGTAG-AATTTTGTC-TTTAAAT-GAAA----AT-ATATGTATAACTATGTTGTTT-----TT---AA--C--CATATTAATTTTTTTACTGTTT-CTTTTG-----CCT----ACTCCCCGAC--AGTGCCTTCcggaaatgcaatgta
gi|8 : caccagagctcattctttcctaaaacaatcagaGTATAGCTTAGTTGTTT-----TTTTAAA--C--CATATTTCATTTTTTACTATT---TCTTA-TACTG-T----ACTCC--GAC--AGCACCTCCCAGTAATAATCAGAAATTGATTGTCAGGAGT--AATATGTAttctgtgcaggggctcctatagagcatactcacacgttgtgaaactatatgtat
gi|9 : aatatgacattTATAGCTTCATTGTTT-----TT--AAA--CTTCATATATTTTTTTTT--TATTTA--GTTAATATTTTTTGCAGTTCGCCGAC--AGCGCCTCTCGGTAATAATCAGAAATTGATTGTTGGGAGT--AATATGCAga
gi|10 : TATAACTTTGTTGTTT-----TT--AAA--TTTCATATATCATATTTCGTTTTTTACTTCTTCTTTTGCT----GTTCCCCGAT--AGGACCTCCCAGTAATTATCAGAAATTAATTGTTGGGAGT--AATga
gi|11 : CTTTGTTGTTT-----TT--AAA--T--CATATTTCATTTTTTACTATTT-CTTTTACTGTTCC-----AC-----GAC--AGCGACTCCAAGTAATATTCAGAAAATGATTTTTTGa
gi|15 : CCGAC--AGCGCCTCCCTGTAATACTCAGAATTTGATTATTAGGAGT--GATtggaaatatgtaga
gi|16 : ttGCACCTCCCAGTAATAGTCAGAAATCGAT
gi|13 : GCGCCTCTTGGTTATAATC--AAATTTATTGCTGGGAGT--gggagtaacatacagaat
gi|14 : GCCTCCCAGTAATAATCAGAAATTGATTGTTAGGAGTAATATTTaccatgtagatttatgtaga
gi|17 : tCAATAATAATCAGAAATTGATTGTTTGGAGT--AATATGTAagatcta
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|2 ): AAATAAAAAAATCTTTATTAAAACTGCTGAAACTGCAAACTATTTATGTATCACCACCAGCAATAATCCAAATTGTCCAAAGACACAGATAACATTATACAGACAGCTATTATCACTCTCAATTTCATAAAACTGGTATACAAACTAGCAACATAATATTAAACAGACTGCCTACTATGTTTATGTAGGACCACAGCTTACCATCCCTGGCAAGAAAACTAACATACGACGTGGAAGAGTTCAATGAACAGCTGTCAGGTATGTTATATCTGAATGATTACAATTACCAGAATAGTGAAACATCCACGTTGAACACCTAACTTGAAAACCCTCGGACATGGGCGACTAAAATCTTCTCTAATCTATTTCTATACAATTAGATCTGGACTTGTTCATCATCCCCACCTTATCCCATCACGTATCCTGAATTATCTGACCTCACAATCTTGCACCCAGTATCATGCAAATGGTTTTCCTCCAAAGACATTACGCGCCTGGAATAGCCTTCCAGATCAGGTCCTAGGTACACCCAG
Unaligned ( gi|12 ): TACTCTCTCTACAGTAATCTTAGAGAGCATCAATTAGATCAGAAATTGTTTGTTGGGAGTTATATGTAGATGTT
Alignments
lowQualScore : 1 4444444444 55555 222 22 333333333333 444 111111 111111111 1111 11111 11 3333333333333333
lowQualScore : 3 5 4 66 2 55 4 2 2 66 2 4 3 4 2222222222 3 2 00000 2 000 1 22 1 1 1 1 1 4444 777777777777 333 0 44 0 3 999999 99 1 1 1 555555555 6 1 7777 11111 66 66 22 4 55 0000000000000000 66 55
lowQualScore : . . . .. . .. . . . .. . . . . .......... . . ..... . ... . .. . . . . . .... ............ ... . .. . . ...... .. . . . ......... . . .... ..... .. .. .. . .. ................ .. ..
lowQualScore : 0 0 0 55 5 00 0 5 5 55 5 0 0 0 5555555555 0 5 00000 5 555 0 33 0 0 0 0 0 0000 000000000000 000 8 00 8 2 222222 22 0 7 0 888888888 7 0 0000 11111 11 11 22 4 66 6666666666666666 33 55
consensus : AAAGTNGAAAGAATACAGAGGGCAGCANCTAGATATGTNNTNAATGATTACGGCTTCACAAGCAGTGTCACNNAAACATNTCAAATCTTAAANTNGCAAACCCNNCATCAAANAAGAATAANTNCATCACTAATNCTGCTTTTTAAAATAAAANACAACCTANTTTACATGCTGTANATCACCTCCGTTTAATCCCAATAAAAATTCT-AAATTTTCATGTACCTTTTTCTCGGACCCTATATCAT----------T-CTTTCCTAGAACAATCAGAAATTGGAATAGCCTACCAAGTTGTGTTAAAGCCAGTACCAGCCTAAATCAGTTTATG------GCTGGTCTGGCCACAGTAAAATTCTAAA--CAAGTCTCGTTTTTAACACTAGAAATGTAG----TNATNTT-TAAATGAAAATAT----ATGTATAGCTTTGTTG-----TTTTT--AAA--C--CATAT-TTCATTTTTTACT-ATTTA-CTNTT-C-T-TT-GCTGTTCCCCGAC--AGCGCCTCCCAGTAATAATCAGAAATTGATTGTTGGGAGTAATATGTATGT
Reference ( family-5399 ) : AAAGTAGAAAGAATACAGAGGACAGCATCTAGATATGTTCTCAATAATTACGACTTCACAAGCAGTGTCACCCAAACATATCAAATCTTAAACTGGCAAACTCTCCATCAAAGAAGAATAATTTCATCACTAATACTACTTTTTAAAATAAAAAACAACCTAGTT-----GCTGTAGATCACCTCCATTTAATCCCAANAAAAATTCTGAAATTTTCANGNACNTTTTTCNCGGACNCNNNNTCAT----------T-CTTCCCTAGAACAACC-GAAATTGGAATAGCCTACCAAGTTGTGTTAAAGCCAGTACCAGCCTAAATCAGTTTATG------GCTGGTCTGGCCACAGTAAAATTCTAAA--CAANTCTCGTTTTTAACACTAGAAATGTAG----TNATGTT-TNAATGAAAATAT----ATGTATAGCTTTGTTG-----TTTTT--AAA--C--CATAT-TTCATTTTTTACT-ATTTA-CTNTTNC-T-TT-GCTGCTCCCCGAC--AGCGCCTCCCAGTAATAATCAGAAATTGATTGTTGGGAGTAATATGTATGT
gi|1 : AAAGTAGAAAGAATACAGAGGACAGCATCTAGATATGTTCTCAATAATTACGACTTCACAAGCAGTGTCACCCAAACATATCAAATCTTAAACTGGCAAACTCTCCATCAAAGAAGAATAATTTCATCACTAATACTACTTTTTAAAATAAAAAACAACCTAGTT-----GCTGTAGATCACCTCCATTTAATCCCAATAAAAATTCTG-AATTTTCAGGTACATTTTTCACAGACACAAACTCAT----------T-CTTCCCTAGAACAATTAGAAATTGGAATAGCATACCAGGTTGCGTTAAACCCAGTACCAGCCGAAATCAGTTTATG------GCTGGACTGGCCACAGCAAAATTCTAAA--CAAGTCTTGTATTTTACACTAGAAATGTAG----TTATTTT-T
gi|10 : aacaaagaaaatgctcatttctgcggaaaattccaaacaacaagcttattaatacagacactcagccacgattttaattcctcaacccaaactgtatagacaatataacatcaaaagcaaacaatacccttaaattcattaaaattaatatacaaacaaataataaaaagataaaagaaacatcctacgacacatgtgtgagacaataaatagaatactgttcgtccctggcaaaagacacaaacatacTATAACTTTGTTG-----TTTTT--AAA--TTTCATAT-ATCATATTTCGTT-TTTTA-CTTCTTC-T-TTTGCTGTTCCCCGAT--AGGACCTCCCAGTAATTATCAGAAATTAATTGTTGGGAGTAATAa
gi|11 : CTTTGTTG-----TTTTT--AAA--T--CATAT-TTCATTTTTTACT-ATTT--CT------T-TT-ACTGTTCCACGAC--AGCGACTCCAAGTAATATTCAGAAAATGATTTTTTGTGGAAATATGTA
gi|12 : ATCAGAAATTGTTTGTTGGGAGTTATATGTAga
gi|13 : tactctctctacagtaatcttagagagcatcaattagGCGCCTCTTGGTTATAATCA--AATTTATTGCTGGGAGTACCATGTAgatgtt
gi|14 : GCCTCCCAGTAATAATCAGAAATTGATTGTTAGGAGTAATATTTAgatttatgtaga
gi|15 : tCCGAC--AGCGCCTCCCTGTAATACTCAGAATTTGATTATTAGGAGTGATgatcta
gi|16 : ttGCACCTCCCAGTAATAGTCAGAAATCGA----TGGGAGTAACAT
gi|17 : CAATAATAATCAGAAATTGATTGTTTGGAGTAATATGTAacagaat
gi|3 : AAAGTCGAAAGAATACAGAGGGCA-CAATTAGATATGTAATAAATGATTACGGCTTCACAAACAGTGTCACAAAAATATTTCAAATTTTAAAATTGCAAACCCAACATCAAATAAGAATAAATGCATCACTAATTTTGCTTT----------ACACAATTTACTTTACATGCTATATATCACC---GTTTAATTCCAATCAAAACTCTTAGATTTTCATGTACCTTTTCCTTGAATCCTATATCAT----------CACTTTTCTAGGACAA------ATTGGAATAGCCTACCAAGTTATGTCAAAGTCAATACCAGCATCAATCAGTTTATG------GCTGGTCTGGTCTCAGTAAAATTCTGAA--CAAAGCTCATTTTTAATAATGAAAATGCAG----TAATGTT-TTAATTAAAATAC----AAGTATAGCTTTGTTG-----TTGTT--AAA--C--CATAT-TTCATTTTTTACT-ATTCA-CTATTAC-TACT-CCTACTCCCCGAC--AGCGCCTCCCAGTAATAGTCAGAAATTGATTGTTTGGAGTTATTTGTATATgg
gi|4 : CCAAAAAAAATTCT-AAATTTTCATAAACCTTTTTCTCGGACCCTTTATCATCAGAACTCATT-CTTTCTTAGAACAACCTGAAATTGAAATAGCCTACCAAGTTGTGTTAAAGCCATTACCAGCCTAAATCAGTTTACC------GCTAGTCTGGCAACAGTAAAATTCTAAA--CAGGTGTTGTTTTTAATGCTGGAAATGTAG----GGGGGTTGGGAATGAAAATAT----ATGTATAGCTTTGTTGTTGTTTTTTT--TAA--C--CATAT-TTCA-TTTTTATT-ATTTA-------T-T-TT-GCTGTTCCCCGACAGAGAGTCTCCCAGTAATAATCAGAATTTGAGTGTTGGAAGTAATATGT
gi|5 : TCAT----------T-CTTCCCTAGAACAATTAGAAATTTGAATAGCCTACCAAGTTGTGTTAAAGCCAGCACCAACCTAAATTAGTTTATG------GTTGGTCTGGCCACAGTAAATTTCTAAA--CAACTCTTGTTTTTAACACTAGACATGTAG----TTATTTT-TAAATGAAAATAT----ATGTATAACTTTGTTG-----TTTTT--AAATTC--CATAT-ATCATATTTCATT-TTTTA-CTATTTCTT-TT-GCTGTTCCCCGAT--AGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGTATGT
gi|6 : tatcagaacTCAT----------T-CTTTCCTAAAACAATCAGAAATCGGAatat
gi|6 : caccagagcAAATCGGATTATGTAAACAGCTGGTCTGGTCACAATCAAATTTTAAA--TAATTTCCATTTTTAACATAAGAAATGTAGAATTTTGTCTT-TAAATGAAAATAT----ATGTATAACTATGTTG-----TTTTT---AA--C--CATAT-TAATTTTTTTACT-GTTT--CTTTTGC-------CTACTCCCCGAC--AGTGCCTTCttatgtaaacagctggtctggtcacaatcaaattttaaataatttccatttttaacataagaaatgtagaattttgtctttaaatgaaaatatatgtataactatgttgtttttaaccatattaatttttttactgtttcttttgcctactccccgacagtgccttcttctgtgcaggggctcctatagagcatactcacacgttgtgaaactatatgtat
gi|7 : caccagagctcattctttcctaaaacaatcagTACTAAGTTATGGTAA-GCC--T-CCA--CTCAGCCAGTTT---------GCTA--CTAGCCACAAAGACATTCTAAAATCAGGTC-CGTTTGTAATAATAGTAATGTAG----TG--GTA-TAAATATAAACATTATTATATATAGATTTCAT--------TTC--AAA--C--CATTC-TTCTTTTTGT-----TTTAGCTGTT-------------TCCCCAAC--AGCGCCTCCCACTTATAACCAGAAATTGATTATCGGAAATGCAATGTAttctgtgcaggggctcctatagagcatactcacacgttgtgaaactatatgtat
gi|8 : TGTATAGCTTAGTTG-----TTTTTTTAAA--C--CATAT-TTCATTTTTTACT-ATTT--CTTATAC-T-GT-ACT-----CCGAC--AGCACCTCCCAGTAATAATCAGAAATTGATTGTCAGGAGTAATATGTA
gi|9 : aatatgacatTATAGCTTCATTG-----TTTTT--AAA--CTTCATATATTTTTTTTTTATTTAGTTA-ATATTT--T-TT-GCAGTTCGCCGAC--AGCGCCTCTCGGTAATAATCAGAAATTGATTGTTGGGAGTAATATGCAga
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): AAATAAAAAAATCTTTATTAAAACTGCTGAAACTGCAAACTATTTATGTATCACCACCAGCAATAATCCAAATTGTCCAAAGACACAGATAACATTATACAGACAGCTATTATCACTCTCAATTTCATAAAACTGGTATACAAACTAGCAACATAATATTAAACAGACTGCCTACTATGTTTATGTAGGACCACAGCTTACCATCCCTGGCAAGAAAACTAACATACGACGTGGAAGAGTTCAATGAACAGCTGTCAGGTATGTTATATCTGAATGATTACAATTACCAGAATAGTGAAACATCCACGTTGAACACCTAACTTGAAAACCCTCGGACATGGGCGACTAAAATCTTCTCTAATCTATTTCTATACAATTAGATCTGGACTTGTTCATCATCCCCACCTTATCCCATCACGTATCCTGAATTATCTGACCTCACAATCTTGCACCCAGTATCATGCAAATGGTTTTCCTCCAAAGACATTACGCGCCTGGAATAGCCTTCCAGATCAGGTCCTAGGTACACCCAG
Alignments
lowQualScore : 1 4444444444 22222 222 1 333333333333 111111 1111 1111 11111 111111111 11 666666666
lowQualScore : 1 5 1 22 1 22 1 1 1 22 1 1 1 1 2222222222 1 1 77777 1 000 3 777777777777 666 0 44 0 3 999999 99 1 1 1 4444 1 1 6 7777 11111 66 777777777 22 4 4 444444444 4 4 555 4 55
lowQualScore : . . . .. . .. . . . .. . . . . .......... . . ..... . ... . ............ ... . .. . . ...... .. . . . .... . . . .... ..... .. ......... .. . . ......... . . ... . ..
lowQualScore : 0 0 0 00 0 00 0 0 0 00 0 0 0 0 5555555555 0 0 00000 0 555 3 000000000000 222 8 00 8 2 222222 22 0 7 0 2222 0 0 7 0000 11111 11 888888888 22 4 4 777777777 4 4 222 4 55
consensus : AAAGTNGAAAGAATACAGAGGGCAGCANCTAGATATGTNNTNAATGATTACGGCTTCACAAGCAGTGTCACNNAAACATNTCAAATCTTAAANTNGCAAACCCNNCATCAAANAAGAATAANTNCATCACTAATNCTGCTTTTTAAAATAAAANACAACCTANTTTACATGCTGTANATCACCTCCGTTTAATCCCAATAAAAATTCT-AAATTTTCATGTACCTTTTTCTCGGACCCTATATCAT----------T-CTTTCCTAGAACAATCAGAAATTGGAATAGCCTACCAAGTTGTGTTAAAGCCAGTACCAGCCTAAATCAGTTTATG------GCTGGTCTGGCCACAGTAAAATTCTAAA--CAAGTCTCGTTTTTAACACTAGAAATGTAG----TNGTNTT-TAAATGAAAATAT----ATGTATAGCTTTGTTG-----TTTTT--AA---------AC--CATAT-TTCATTTTTTACT-ATTTACT-----CT-T-T-G-CTGTT-CCCCGAC--AGCGCCTCCCAGTAATAATCAGAAATTGATTGTTGGGAGTAATATGTATGT
Reference ( family-5399 ) : AAAGTNGAAAGAATACAGAGGGCAGCANCTAGATATGTNNTNAATGATTACGGCTTCACAAGCAGTGTCACNNAAACATNTCAAATCTTAAANTNGCAAACCCNNCATCAAANAAGAATAANTNCATCACTAATNCTGCTTTTTAAAATAAAANACAACCTANTTTACATGCTGTANATCACCTCCGTTTAATCCCAATAAAAATTCT-AAATTTTCATGTACCTTTTTCTCGGACCCTATATCAT----------T-CTTTCCTAGAACAATCAGAAATTGGAATAGCCTACCAAGTTGTGTTAAAGCCAGTACCAGCCTAAATCAGTTTATG------GCTGGTCTGGCCACAGTAAAATTCTAAA--CAAGTCTCGTTTTTAACACTAGAAATGTAG----TNATNTT-TAAATGAAAATAT----ATGTATAGCTTTGTTG-----TTTTT--AA---------AC--CATAT-TTCATTTTTTACT-ATTTACTN-TT-CT-T-T-G-CTGTT-CCCCGAC--AGCGCCTCCCAGTAATAATCAGAAATTGATTGTTGGGAGTAATATGTATGT
gi|1 : AAAGTAGAAAGAATACAGAGGACAGCATCTAGATATGTTCTCAATAATTACGACTTCACAAGCAGTGTCACCCAAACATATCAAATCTTAAACTGGCAAACTCTCCATCAAAGAAGAATAATTTCATCACTAATACTACTTTTTAAAATAAAAAACAACCTAGTT-----GCTGTAGATCACCTCCATTTAATCCCAATAAAAATTCT-GAATTTTCAGGTACATTTTTCACAGACACAAACTCAT----------T-CTTCCCTAGAACAATTAGAAATTGGAATAGCATACCAGGTTGCGTTAAACCCAGTACCAGCCGAAATCAGTTTATG------GCTGGACTGGCCACAGCAAAATTCTAAA--CAAGTCTTGTATTTTACACTAGAAATGTAG----TTATTTT-TA
gi|10 : aacaaagaaaatgctcatttctgcggaaaattccaaacaacaagcttattaatacagacactcagccacgattttaattcctcaacccaaactgtatagacaatataacatcaaaagcaaacaatacccttaaattcattaaaattaatatacaaacaaataataaaaagataaaagaaacatcctacgacacatgtgtgagacaataaatagaatactgttcgtccctggcaaaagacacaaacatacTATAACTTTGTTG-----TTTTT--AA---------ATTTCATAT-ATCATATTTCGTT-TTTTACTTCTT-CT-T-TTG-CTGTT-CCCCGAT--AGGACCTCCCAGTAATTATCAGAAATTAATTGTTGGGAGTAATA
gi|11 : CTTTGTTG-----TTTTT--AA---------AT--CATAT-TTCATTTTTTACT-ATTT-CT------T-T-T-A-CTGTT-CCACGAC--AGCGACTCCAAGTAATATTCAGAAAATGATTTTTTGTGGAAATATGTA
gi|12 : ATCAGAAATTGTTTGTTGGGAGTTATATGTAga
gi|13 : tactctctctacagtaatcttagagagcatcaattagGCGCCTCTTGGTTATAATCA--AATTTATTGCTGGGAGTACCATGTAgatgtt
gi|14 : GCCTCCCAGTAATAATCAGAAATTGATTGTTAGGAGTAATATTTAgatttatgtaga
gi|15 : tCCGAC--AGCGCCTCCCTGTAATACTCAGAATTTGATTATTAGGAGTGATgatcta
gi|16 : ttGCACCTCCCAGTAATAGTCAGAAATCGA----TGGGAGTAACAT
gi|17 : CAATAATAATCAGAAATTGATTGTTTGGAGTAATATGTAacagaat
gi|3 : AAAGTCGAAAGAATACAGAGGGCA-CAATTAGATATGTAATAAATGATTACGGCTTCACAAACAGTGTCACAAAAATATTTCAAATTTTAAAATTGCAAACCCAACATCAAATAAGAATAAATGCATCACTAATTTTGCTTT----------ACACAATTTACTTTACATGCTATATATCACC---GTTTAATTCCAATCAAAACTCTTAGATTTTCATGTACCTTTTCCTTGAATCCTATATCAT----------CACTTTTCTAGGACAA------ATTGGAATAGCCTACCAAGTTATGTCAAAGTCAATACCAGCATCAATCAGTTTATG------GCTGGTCTGGTCTCAGTAAAATTCTGAA--CAAAGCTCATTTTTAATAATGAAAATGCAG----TAATGTT-TTAATTAAAATAC----AAGTATAGCTTTGTTG-----TTGTT--AA---------AC--CATAT-TTCATTTTTTACT-ATTCACTA-TTACTAC-T-C-CTACT-CCCCGAC--AGCGCCTCCCAGTAATAGTCAGAAATTGATTGTTTGGAGTTATTTGTATATgg
gi|4 : CCAAAAAAAATTCT-AAATTTTCATAAACCTTTTTCTCGGACCCTTTATCATCAGAACTCATT-CTTTCTTAGAACAACCTGAAATTGAAATAGCCTACCAAGTTGTGTTAAAGCCATTACCAGCCTAAATCAGTTTACC------GCTAGTCTGGCAACAGTAAAATTCTAAA--CAGGTGTTGTTTTTAATGCTGGAAATGTAG----GGGGGTTGGGAATGAAAATAT----ATGTATAGCTTTGTTGTTGTTTTTTT--TA---------AC--CATAT-TTCA-TTTTTATT-ATTTA-------TT-T-T-G-CTGTT-CCCCGACAGAGAGTCTCCCAGTAATAATCAGAATTTGAGTGTTGGAAGTAATATGT
gi|5 : TCAT----------T-CTTCCCTAGAACAATTAGAAATTTGAATAGCCTACCAAGTTGTGTTAAAGCCAGCACCAACCTAAATTAGTTTATG------GTTGGTCTGGCCACAGTAAATTTCTAAA--CAACTCTTGTTTTTAACACTAGACATGTAG----TTATTTT-TAAATGAAAATAT----ATGTATAACTTTGTTG-----TTTTT--AAATTCCATATAT--CATAT-TTCATTTTTTACT-ATTT-CT------T-T-T-G-CTGTT-CCCCGAT--AGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGTATGT
gi|6 : tatcagaacTCAT----------T-CTTTCCTAAAACAATCAGAAATCGGAatat
gi|6 : caccagagcAAATCGGATTATGTAAACAGCTGGTCTGGTCACAATCAAATTTTAAA--TAATTTCCATTTTTAACATAAGAAATGTAGAATTTTGTCTT-TAAATGAAAATAT----ATGTATAACTATGTTG-----TTTTT---A---------AC--CATAT-TAATTTTTTTACT-GTTT-CT------T-T-T-GCCTACT-CCCCGAC--AGTGCCTTCttatgtaaacagctggtctggtcacaatcaaattttaaataatttccatttttaacataagaaatgtagaattttgtctttaaatgaaaatatatgtataactatgttgtttttaaccatattaatttttttactgtttcttttgcctactccccgacagtgccttcttctgtgcaggggctcctatagagcatactcacacgttgtgaaactatatgtat
gi|7 : caccagagctcattctttcctaaaacaatcagTACTAAGTTATGGTAA-GCC--T-CCA--CTCAGCCAGTTT---------GCTA--CTAGCCACAAAGACATTCTAAAATCAGGTC-CGTTTGTAATAATAGTAATGTAG----TGGTAT---AAATATAAACATTATTATATATAGATTTCAT--------TTC--AA---------AC--CATTC-TTCTTTTTGT-----TTTA--------------G-CTGTTTCCCCAAC--AGCGCCTCCCACTTATAACCAGAAATTGATTATCGGAAATGCAATGTAttctgtgcaggggctcctatagagcatactcacacgttgtgaaactatatgtat
gi|8 : TGTATAGCTTAGTTG-----TTTTTTTAA---------AC--CATAT-TTCATTTTTTACT-ATTT--------CT-TAT-A-CTGTA-CTCCGAC--AGCACCTCCCAGTAATAATCAGAAATTGATTGTCAGGAGTAATATGTA
gi|9 : aatatgacatTATAGCTTCATTG-----TTTTT--AA---------ACTTCATATATTTTTTTTTTATTTAGTTAATA-TT-TT-T-T-G-CAGTT-CGCCGAC--AGCGCCTCTCGGTAATAATCAGAAATTGATTGTTGGGAGTAATATGCAga
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): AAATAAAAAAATCTTTATTAAAACTGCTGAAACTGCAAACTATTTATGTATCACCACCAGCAATAATCCAAATTGTCCAAAGACACAGATAACATTATACAGACAGCTATTATCACTCTCAATTTCATAAAACTGGTATACAAACTAGCAACATAATATTAAACAGACTGCCTACTATGTTTATGTAGGACCACAGCTTACCATCCCTGGCAAGAAAACTAACATACGACGTGGAAGAGTTCAATGAACAGCTGTCAGGTATGTTATATCTGAATGATTACAATTACCAGAATAGTGAAACATCCACGTTGAACACCTAACTTGAAAACCCTCGGACATGGGCGACTAAAATCTTCTCTAATCTATTTCTATACAATTAGATCTGGACTTGTTCATCATCCCCACCTTATCCCATCACGTATCCTGAATTATCTGACCTCACAATCTTGCACCCAGTATCATGCAAATGGTTTTCCTCCAAAGACATTACGCGCCTGGAATAGCCTTCCAGATCAGGTCCTAGGTACACCCAG
Alignments
lowQualScore : 333333 1 1 111111 333333 1 1 4444444444444444444444444444 1 1 11 44444444444444444444 111 111111 1111 1111 11111 22222222222222222222 44444444444
lowQualScore : 1 0 6 11 000000 1 0 3 2 444444 444444 3 7 1 1 22 1 111 4 0 9999999999999999999999999999 1 2 0 1 0 3 9 33 0 55 55555555555555555555 111 888 0 44 0 3 999999 99 1 1 1 4444 1 1 6 7777 11111 66 88888888888888888888 4 1 66 66 77777777777 4 4 55
lowQualScore : . . . .. ...... . . . . ...... ...... . . . . .. . ... . . ............................ . . . . . . . .. . .. .................... ... ... . .. . . ...... .. . . . .... . . . .... ..... .. .................... . . .. .. ........... . . ..
lowQualScore : 0 7 7 77 333333 0 7 3 0 333333 333333 3 3 0 0 00 0 777 0 7 0000000000000000000000000000 0 3 7 2 0 2 8 88 2 22 00000000000000000000 777 777 8 00 8 2 222222 22 0 7 0 2222 0 0 7 0000 11111 11 00000000000000000000 4 3 11 11 11111111111 4 4 55
consensus : AAAGTNGAAAGAATACAGAGGACAGCANTTAGATATGT----TCTNAATGATTACGACT-TCACAAGCAGTGTCAC--AAACAT-----TTCAA-ATCTTAAACTTGCAAACCCTCCGTCAAAGAAGAATAAATTCATCACTAAT-CTACTTTT----ATA-AANACGATCTAGTT-AC--GCTGTANATCACCCCCGTTTAATCCCAATAAAAATTCT-GAATTTTCATGTACCTTTT--TCTCGGACCCNATATCAT----------T-C-------TTTCCT---AGAACAATCAGAAATTGGAATAGCCTACCAAGTTGTGTTAAAGCCAGTACCAGCCTAAATCAGTTTATG------GCTGGTCTGGCCACAGTAAAATTCTAAA--CAAGTCTCGTTTTTAACACTAGAAATGTAG----TNGTNTT-TAAATGAAAATAT----ATGTATAGCTTTGTTG-----TTTTT--AA---------AC---------CATAT-TTCATTTTTTACT--ATT--TACT-TT-----TG-CTGTT-CCCCGAC--AGCGCCTCCCAGTAATAATCAGAAATTGATTGTTGGGAGTAATATGTATGT
Reference ( family-5399 ) : AAAGTNGAAAGAATACAGAGGGCAGCANCTAGATATGT----NNTNAATGATTACGGCT-TCACAAGCAGTGTCACNNAAACAT-----NTCAA-ATCTTAAANTNGCAAACCCNNCATCAAANAAGAATAANTNCATCACTAATNCTGCTTTTTAAAATAAAANACAACCTANTTTACATGCTGTANATCACCTCCGTTTAATCCCAATAAAAATTCT-AAATTTTCATGTACCTTTT--TCTCGGACCCTATATCAT----------T-C-------TTTCCT---AGAACAATCAGAAATTGGAATAGCCTACCAAGTTGTGTTAAAGCCAGTACCAGCCTAAATCAGTTTATG------GCTGGTCTGGCCACAGTAAAATTCTAAA--CAAGTCTCGTTTTTAACACTAGAAATGTAG----TNGTNTT-TAAATGAAAATAT----ATGTATAGCTTTGTTG-----TTTTT--AA---------AC---------CATAT-TTCATTTTTTACT--ATT--TACTCTT-----TG-CTGTT-CCCCGAC--AGCGCCTCCCAGTAATAATCAGAAATTGATTGTTGGGAGTAATATGTATGT
gi|1 : AAAGTAGAAAGAATACAGAGGACAGCATCTAGATATGT----TCTCAATAATTACGACT-TCACAAGCAGTGTCACCCAAACAT-----ATCAA-ATCTTAAACTGGCAAACTCTCCATCAAAGAAGAATAATTTCATCACTAATACTACTTTTTAAAATAAAAAACAACCTAGTT-----GCTGTAGATCACCTCCATTTAATCCCAATAAAAATTCT-GAATTTTCAGGTACATTTT--TCACAGACACAAACTCAT----------T-C-------TTCCCT---AGAACAATTAGAAATTGGAATAGCATACCAGGTTGCGTTAAACCCAGTACCAGCCGAAATCAGTTTATG------GCTGGACTGGCCACAGCAAAATTCTAAA--CAAGTCTTGTATTTTACACTAGAAATGTAG----TTATTTT-TA
gi|10 : aacaaagaaaatgctcatttctgcggaaaattccaaacaacaagcttattaatacagacactcagccacgattttaattcctcaacccaaactgtatagacaatataacatcaaaagcaaacaatacccttaaattcattaaaattaatatacaaacaaataataaaaagataaaagaaacatcctacgacacatgtgtgagacaataaatagaatactgttcgtccctggcaaaagacacaaacatacTATAACTTTGTTG-----TTTTT--AA---------ATTTCATATATCATAT-TTCGTTTTTTACT--TCT--T-CT-TT-----TG-CTGTT-CCCCGAT--AGGACCTCCCAGTAATTATCAGAAATTAATTGTTGGGAGTAATA
gi|11 : CTTTGTTG-----TTTTT--AA---------AT---------CATAT-TTCATTTTTTACT--ATT--T-CT-TT-----TA-CTGTT-CCACGAC--AGCGACTCCAAGTAATATTCAGAAAATGATTTTTTGTGGAAATATGTA
gi|12 : ATCAGAAATTGTTTGTTGGGAGTTATATGTAga
gi|13 : tactctctctacagtaatcttagagagcatcaattagGCGCCTCTTGGTTATAATCA--AATTTATTGCTGGGAGTACCATGTAgatgtt
gi|14 : GCCTCCCAGTAATAATCAGAAATTGATTGTTAGGAGTAATATTTAgatttatgtaga
gi|15 : tCCGAC--AGCGCCTCCCTGTAATACTCAGAATTTGATTATTAGGAGTGATgatcta
gi|16 : ttGCACCTCCCAGTAATAGTCAGAAATCGA----TGGGAGTAACAT
gi|17 : CAATAATAATCAGAAATTGATTGTTTGGAGTAATATGTAacagaat
gi|2 : GGAAGAGTTCAATGAACAGCTGTCAGGTATGTTATATCTGAATGATTACAATTACCAGAA-TAGTG------AAACATCCACGTTGAACACCT--AACTTGAAAACCCTCGGACATGGGCGACTAAAATCTTCTCTAAT-CTATTTCT----ATACAATTAGATCTGG---AC---TTGTTCATCATCCCCACCTTATCCCATCACGTATCCT-GAATTATC-TG-ACCTCACAATCTTGCACCCAGTATCAT----------G-CAAATGGTTTTCCTCCAAAGACATTACGCGCCTGGAATAGCCTTCCAgg
gi|3 : aaataaaaaaatctttattaaaactgctgaaactgcaaactatttatgtatcaccaccagcaataatccaaattgtccaaagacacagataacattatacagacagctattatcactctcaatttcataaaactggtatacaaactagcaacataatattaaacagactgcctactatgtttatgtaggaccacagcttaccatccctggcaagaaaactaacatacgacgtAAAGTCGAAAGAATACAGAGGGCA-CAATTAGATATGT----AATAAATGATTACGGCT-TCACAAACAGTGTCACAAAAATAT-----TTCAA-ATTTTAAAATTGCAAACCCAACATCAAATAAGAATAAATGCATCACTAATTTTGCTTT----------ACACAATTTACTTTACATGCTATATATCACC---GTTTAATTCCAATCAAAACTCTTAGATTTTCATGTACCTTTT--CCTTGAATCCTATATCAT----------CAC-------TTTTCT---AGGACAA------ATTGGAATAGCCTACCAAGTTATGTCAAAGTCAATACCAGCATCAATCAGTTTATG------GCTGGTCTGGTCTCAGTAAAATTCTGAA--CAAAGCTCATTTTTAATAATGAAAATGCAG----TAATGTT-TTAATTAAAATAC----AAGTATAGCTTTGTTG-----TTGTT--AA---------AC---------CATAT-TTCATTTTTTACT--ATT--CACTATTACTACTC-CTACT-CCCCGAC--AGCGCCTCCCAGTAATAGTCAGAAATTGATTGTTTGGAGTTATTTGTATATgatcaggtcctaggtacacccag
gi|4 : CCAAAAAAAATTCT-AAATTTTCATAAACCTTTT--TCTCGGACCCTTTATCATCAGAACTCATT-C-------TTTCTT---AGAACAACCTGAAATTGAAATAGCCTACCAAGTTGTGTTAAAGCCATTACCAGCCTAAATCAGTTTACC------GCTAGTCTGGCAACAGTAAAATTCTAAA--CAGGTGTTGTTTTTAATGCTGGAAATGTAG----GGGGGTTGGGAATGAAAATAT----ATGTATAGCTTTGTTGTTGTTTTTTT--TA---------AC---------CATAT-TTCA-TTTTTATT--ATT--TA--TTT-----TG-CTGTT-CCCCGACAGAGAGTCTCCCAGTAATAATCAGAATTTGAGTGTTGGAAGTAATATGT
gi|5 : TCAT----------T-C-------TTCCCT---AGAACAATTAGAAATTTGAATAGCCTACCAAGTTGTGTTAAAGCCAGCACCAACCTAAATTAGTTTATG------GTTGGTCTGGCCACAGTAAATTTCTAAA--CAACTCTTGTTTTTAACACTAGACATGTAG----TTATTTT-TAAATGAAAATAT----ATGTATAACTTTGTTG-----TTTTT--AAATTCCATATAT---------CATAT-TTCATTTTTTACT--ATT--T-CT-TT-----TG-CTGTT-CCCCGAT--AGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGTATGT
gi|6 : tatcagaacTCAT----------T-C-------TTTCCT---AAAACAATCAGAAATCGGAatat
gi|6 : caccagagcAAATCGGATTATGTAAACAGCTGGTCTGGTCACAATCAAATTTTAAA--TAATTTCCATTTTTAACATAAGAAATGTAGAATTTTGTCTT-TAAATGAAAATAT----ATGTATAACTATGTTG-----TTTTT---A---------AC---------CATAT-TAATTTTTTTACT--GTT--T-CT-TT-----TGCCTACT-CCCCGAC--AGTGCCTTCttatgtaaacagctggtctggtcacaatcaaattttaaataatttccatttttaacataagaaatgtagaattttgtctttaaatgaaaatatatgtataactatgttgtttttaaccatattaatttttttactgtttcttttgcctactccccgacagtgccttcttctgtgcaggggctcctatagagcatactcacacgttgtgaaactatatgtat
gi|7 : caccagagctcattctttcctaaaacaatcagTACTAAGTTATGGTAA-GCC--T-CCA--CTCAGCCAGTTT---------GCTA--CTAGCCACAAAGACATTCTAAAATCAGGTC-CGTTTGTAATAATAGTAATGTAG----TGGTAT---AAATATAAACATTATTATATATAGATTTCAT--------TTC--AA---------AC---------CATTC-TTCTTTTTGT------TT--TA-----------G-CTGTTTCCCCAAC--AGCGCCTCCCACTTATAACCAGAAATTGATTATCGGAAATGCAATGTAttctgtgcaggggctcctatagagcatactcacacgttgtgaaactatatgtat
gi|8 : TGTATAGCTTAGTTG-----TTTTTTTAA---------AC---------CATAT-TTCATTTTTTACT--ATT--T---CTTA----TA-CTGTA-CTCCGAC--AGCACCTCCCAGTAATAATCAGAAATTGATTGTCAGGAGTAATATGTA
gi|9 : aatatgacatTATAGCTTCATTG-----TTTTT--AA---------ACTT-------CATATATTTTTTTTTTATTTAGTTAATATTTTT-----TG-CAGTT-CGCCGAC--AGCGCCTCTCGGTAATAATCAGAAATTGATTGTTGGGAGTAATATGCAga
Alignments
lowQualScore : 2222 1 1 222222 11 33333 1 1 1 666666666666666666666666666666 1 1 11 2222222222 2222222 111 111111 1111 1111 11111 22222222222222222222 333333 111111
lowQualScore : 1 6 1 8888 1 3 2 111111 88 33333 3 7 0 3 3 444444444444444444444444444444 1 2 0 1 0 0 3 9 33 0 22 9999999999 6 1111111 111 888 0 44 0 3 999999 99 1 1 1 4444 1 1 6 7777 11111 66 88888888888888888888 4 1 4 000000 777777 4 55
lowQualScore : . . . .... . . . ...... .. ..... . . . . . .............................. . . . . . . . . .. . .. .......... . ....... ... ... . .. . . ...... .. . . . .... . . . .... ..... .. .................... . . . ...... ...... . ..
lowQualScore : 0 7 0 3333 0 3 0 333333 33 33333 3 3 7 3 3 000000000000000000000000000000 0 0 7 2 2 0 2 8 88 2 22 2222222222 7 7777777 777 777 8 00 8 2 222222 22 0 7 0 2222 0 0 7 0000 11111 11 00000000000000000000 4 3 4 666666 222222 4 55
consensus : AAAGTNGAAAGAATACAGAGGACAGCANTTAGATATGTT----CTNAATGATTACGACT-TCACAAGCAGTGTCAC--AAA--CAT-----TTCAA-ATCTTAAACTTGCAAACCCTCCGTCAAAGAAGAATAAATTCATCACTAAT-CT-ACTTTT----ATA-AANA-CGATCTAGTT---ACGCTGTANATCACCCCCGTTTAATCCCAATAAAAATTCTGA-ATTTTCATGTACCTTTT--TCTCGGACCCNATA----------TCATT-C-------TTTCCT---AGAACAATCAGAAATTGGAATAGCCTACCAAGTTGTGTTAAAGCCAGTACCAGCCTAAATCAGTTTATG------GCTGGTCTGGCCACAGTAAAATTCTAAA--CAAGTCTCGTTTTTAACACTAGAAATGTAG----TNGTNTT-TAAATGAAAATAT----ATGTATAGCTTTGTTG-----TTTTT--AA---------AC---------CATAT-TTCATTTTTTACT-ATTTA----CTTTTG------CTGTT-CCCCGAC--AGCGCCTCCCAGTAATAATCAGAAATTGATTGTTGGGAGTAATATGTATGT
Reference ( family-5399 ) : AAAGTNGAAAGAATACAGAGGACAGCANTTAGATATGTT----CTNAATGATTACGACT-TCACAAGCAGTGTCAC--AAA--CAT-----TTCAA-ATCTTAAACTTGCAAACCCTCCGTCAAAGAAGAATAAATTCATCACTAAT-CT-ACTTTT----ATA-AANA-CGATCTAGTT---ACGCTGTANATCACCCCCGTTTAATCCCAATAAAAATTCTGA-ATTTTCATGTACCTTTT--TCTCGGACCCNATA----------TCATT-C-------TTTCCT---AGAACAATCAGAAATTGGAATAGCCTACCAAGTTGTGTTAAAGCCAGTACCAGCCTAAATCAGTTTATG------GCTGGTCTGGCCACAGTAAAATTCTAAA--CAAGTCTCGTTTTTAACACTAGAAATGTAG----TNGTNTT-TAAATGAAAATAT----ATGTATAGCTTTGTTG-----TTTTT--AA---------AC---------CATAT-TTCATTTTTTACT-ATTTA----CTTTTG------CTGTT-CCCCGAC--AGCGCCTCCCAGTAATAATCAGAAATTGATTGTTGGGAGTAATATGTATGT
gi|1 : AAAGTAGAAAGAATACAGAGGACAGCATCTAGATATGTT----CTCAATAATTACGACT-TCACAAGCAGTGTCACCCAAA--CAT-----ATCAA-ATCTTAAACTGGCAAACTCTCCATCAAAGAAGAATAATTTCATCACTAATACT-ACTTTTTAAAATA-AAAAACAACCTAGTT-----GCTGTAGATCACCTCCATTTAATCCCAATAAAAATTCTGA-ATTTTCAGGTACATTTT--TCACAGACACAAAC----------TCATT-C-------TTCCCT---AGAACAATTAGAAATTGGAATAGCATACCAGGTTGCGTTAAACCCAGTACCAGCCGAAATCAGTTTATG------GCTGGACTGGCCACAGCAAAATTCTAAA--CAAGTCTTGTATTTTACACTAGAAATGTAG----TTATTTT-TA
gi|10 : aacaaagaaaatgctcatttctgcggaaaattccaaacaacaagcttattaatacagacactcagccacgattttaattcctcaacccaaactgtatagacaatataacatcaaaagcaaacaatacccttaaattcattaaaattaatatacaaacaaataataaaaagataaaagaaacatcctacgacacatgtgtgagacaataaatagaatactgttcgtccctggcaaaagacacaaacatacTATAACTTTGTTG-----TTTTT--AA---------ATTTCATATATCATAT-TTCGTTTTTTACT-TCTT-----CTTTTG------CTGTT-CCCCGAT--AGGACCTCCCAGTAATTATCAGAAATTAATTGTTGGGAGTAATA
gi|11 : CTTTGTTG-----TTTTT--AA---------AT---------CATAT-TTCATTTTTTACT-ATTT-----CTTTTA------CTGTT-CCACGAC--AGCGACTCCAAGTAATATTCAGAAAATGATTTTTTGTGGAAATATGTA
gi|12 : ATCAGAAATTGTTTGTTGGGAGTTATATGTAga
gi|13 : tactctctctacagtaatcttagagagcatcaattagGCGCCTCTTGGTTATAATCA--AATTTATTGCTGGGAGTACCATGTAgatgtt
gi|14 : GCCTCCCAGTAATAATCAGAAATTGATTGTTAGGAGTAATATTTAgatttatgtaga
gi|15 : tCCGAC--AGCGCCTCCCTGTAATACTCAGAATTTGATTATTAGGAGTGATgatcta
gi|16 : ttGCACCTCCCAGTAATAGTCAGAAATCGA----TGGGAGTAACAT
gi|17 : CAATAATAATCAGAAATTGATTGTTTGGAGTAATATGTAacagaat
gi|2 : GGAAGAGTTCAATGAACAGCTGTCAGGTATGTTATATCTGAATGATTACAATTACCAGAA-TAGTG------AAA--CATCCACGTTGAACACCT--AACTTGAAAACCCTCGGACATGGGCGACTAAAATCTTCTCTAAT-CT-ATTTCT----ATACAATT-AGATCTGG-----AC-TTGTTCATCATCCCCACCTTATCCCATCACGTATCCTGA-ATTATC-TG-ACCTCACAATCTTGCACCCAGTA----------TCATG-CAAATGGTTTTCCTCCAAAGACATTACGCGCCTGGAATAGCCTTCCAgg
gi|3 : aaataaaaaaatctttattaaaactgctgaaactgcaaactatttatgtatcaccaccagcaataatccaaattgtccaaagacacagataacattatacagacagctattatcactctcaatttcataaaactggtatacaaactagcaacataatattaaacagactgcctactatgtttatgtaggaccacagcttaccatccctggcaagaaaactaacatacgacgtAAAGTCGAAAGAATACAGAGGGCA-CAATTAGATATGTA----ATAAATGATTACGGCT-TCACAAACAGTGTCAC--AAAAATAT-----TTCAA-ATTTTAAAATTGCAAACCCAACATCAAATAAGAATAAATGCATCACTAAT-TTTGCTTT----------ACA-CAATTTACTTTACATGCTATATATCACC---GTTTAATTCCAATCAAAACTCTTAGATTTTCATGTACCTTTT--CCTTGAATCCTATA----------TCATCAC-------TTTTCT---AGGACAA------ATTGGAATAGCCTACCAAGTTATGTCAAAGTCAATACCAGCATCAATCAGTTTATG------GCTGGTCTGGTCTCAGTAAAATTCTGAA--CAAAGCTCATTTTTAATAATGAAAATGCAG----TAATGTT-TTAATTAAAATAC----AAGTATAGCTTTGTTG-----TTGTT--AA---------AC---------CATAT-TTCATTTTTTACT-ATTCA----CTATTACTACTCCTACT-CCCCGAC--AGCGCCTCCCAGTAATAGTCAGAAATTGATTGTTTGGAGTTATTTGTATATgatcaggtcctaggtacacccag
gi|4 : CCAAAAAAAATTCTAA-ATTTTCATAAACCTTTT--TCTCGGACCCTTTATCATCAGAACTCATT-C-------TTTCTT---AGAACAACCTGAAATTGAAATAGCCTACCAAGTTGTGTTAAAGCCATTACCAGCCTAAATCAGTTTACC------GCTAGTCTGGCAACAGTAAAATTCTAAA--CAGGTGTTGTTTTTAATGCTGGAAATGTAG----GGGGGTTGGGAATGAAAATAT----ATGTATAGCTTTGTTGTTGTTTTTTT--TA---------AC---------CATAT-TTCA-TTTTTATT-ATTTA-----TTTTG------CTGTT-CCCCGACAGAGAGTCTCCCAGTAATAATCAGAATTTGAGTGTTGGAAGTAATATGT
gi|5 : ----------TCATT-C-------TTCCCT---AGAACAATTAGAAATTTGAATAGCCTACCAAGTTGTGTTAAAGCCAGCACCAACCTAAATTAGTTTATG------GTTGGTCTGGCCACAGTAAATTTCTAAA--CAACTCTTGTTTTTAACACTAGACATGTAG----TTATTTT-TAAATGAAAATAT----ATGTATAACTTTGTTG-----TTTTT--AAATTCCATATAT---------CATAT-TTCATTTTTTACT-ATTT-----CTTTTG------CTGTT-CCCCGAT--AGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGTATGT
gi|6 : tatcagaac----------TCATT-C-------TTTCCT---AAAACAATCAGAAATCGGAatat
gi|6 : caccagagcAAATCGGATTATGTAAACAGCTGGTCTGGTCACAATCAAATTTTAAA--TAATTTCCATTTTTAACATAAGAAATGTAGAATTTTGTCTT-TAAATGAAAATAT----ATGTATAACTATGTTG-----TTTTT---A---------AC---------CATAT-TAATTTTTTTACT-GTTT-----CTTTTGC-----CTACT-CCCCGAC--AGTGCCTTCttatgtaaacagctggtctggtcacaatcaaattttaaataatttccatttttaacataagaaatgtagaattttgtctttaaatgaaaatatatgtataactatgttgtttttaaccatattaatttttttactgtttcttttgcctactccccgacagtgccttcttctgtgcaggggctcctatagagcatactcacacgttgtgaaactatatgtat
gi|7 : caccagagctcattctttcctaaaacaatcagTACTAAGTTATGGTAA-GCC--T-CCA--CTCAGCCAGTTT---------GCTA--CTAGCCACAAAGACATTCTAAAATCAGGTC-CGTTTGTAATAATAGTAATGTAG----TGGTAT---AAATATAAACATTATTATATATAGATTTCAT--------TTC--AA---------AC---------CATTC-TTCTTTTTGT-----TTTA---------G------CTGTTTCCCCAAC--AGCGCCTCCCACTTATAACCAGAAATTGATTATCGGAAATGCAATGTAttctgtgcaggggctcctatagagcatactcacacgttgtgaaactatatgtat
gi|8 : TGTATAGCTTAGTTG-----TTTTTTTAA---------AC---------CATAT-TTCATTTTTTACT-ATTT-----CTTATA------CTGTA-CTCCGAC--AGCACCTCCCAGTAATAATCAGAAATTGATTGTCAGGAGTAATATGTA
gi|9 : aatatgacatTATAGCTTCATTG-----TTTTT--AA---------ACTT-------CATATATTTTTTTTTTATTTAGTTAATATTTTTTG------CAGTT-CGCCGAC--AGCGCCTCTCGGTAATAATCAGAAATTGATTGTTGGGAGTAATATGCAga
Alignments
lowQualScore : 2222 1 1 222222 11 33333 1 1 1 666666666666666666666666666666 1 1 11 2222222222 2222222 111 111111 1111 1111 11111 22222222222222222222 333333 111111
lowQualScore : 1 6 1 8888 1 3 2 111111 88 33333 3 7 0 3 3 444444444444444444444444444444 1 2 0 1 0 0 3 9 33 0 22 9999999999 6 1111111 111 888 0 44 0 3 999999 99 1 1 1 4444 1 1 6 7777 11111 66 88888888888888888888 4 1 4 000000 777777 4 55
lowQualScore : . . . .... . . . ...... .. ..... . . . . . .............................. . . . . . . . . .. . .. .......... . ....... ... ... . .. . . ...... .. . . . .... . . . .... ..... .. .................... . . . ...... ...... . ..
lowQualScore : 0 7 0 3333 0 3 0 333333 33 33333 3 3 7 3 3 000000000000000000000000000000 0 0 7 2 2 0 2 8 88 2 22 2222222222 7 7777777 777 777 8 00 8 2 222222 22 0 7 0 2222 0 0 7 0000 11111 11 00000000000000000000 4 3 4 666666 222222 4 55
consensus : AAAGTNGAAAGAATACAGAGGACAGCANTTAGATATGTT----CTNAATGATTACGACT-TCACAAGCAGTGTCAC--AAA--CAT-----TTCAA-ATCTTAAACTTGCAAACCCTCCGTCAAAGAAGAATAAATTCATCACTAAT-CT-ACTTTT----ATA-AANA-CGATCTAGTT---ACGCTGTANATCACCCCCGTTTAATCCCAATAAAAATTCTGA-ATTTTCATGTACCTTTT--TCTCGGACCCNATA----------TCATT-C-------TTTCCT---AGAACAATCAGAAATTGGAATAGCCTACCAAGTTGTGTTAAAGCCAGTACCAGCCTAAATCAGTTTATG------GCTGGTCTGGCCACAGTAAAATTCTAAA--CAAGTCTCGTTTTTAACACTAGAAATGTAG----TNGTNTT-TAAATGAAAATAT----ATGTATAGCTTTGTTG-----TTTTT--AA---------AC---------CATAT-TTCATTTTTTACT-ATTTA----CTTTTG------CTGTT-CCCCGAC--AGCGCCTCCCAGTAATAATCAGAAATTGATTGTTGGGAGTAATATGTATGT
Reference ( family-5399 ) : AAAGTNGAAAGAATACAGAGGACAGCANTTAGATATGTT----CTNAATGATTACGACT-TCACAAGCAGTGTCAC--AAA--CAT-----TTCAA-ATCTTAAACTTGCAAACCCTCCGTCAAAGAAGAATAAATTCATCACTAAT-CT-ACTTTT----ATA-AANA-CGATCTAGTT---ACGCTGTANATCACCCCCGTTTAATCCCAATAAAAATTCTGA-ATTTTCATGTACCTTTT--TCTCGGACCCNATA----------TCATT-C-------TTTCCT---AGAACAATCAGAAATTGGAATAGCCTACCAAGTTGTGTTAAAGCCAGTACCAGCCTAAATCAGTTTATG------GCTGGTCTGGCCACAGTAAAATTCTAAA--CAAGTCTCGTTTTTAACACTAGAAATGTAG----TNGTNTT-TAAATGAAAATAT----ATGTATAGCTTTGTTG-----TTTTT--AA---------AC---------CATAT-TTCATTTTTTACT-ATTTA----CTTTTG------CTGTT-CCCCGAC--AGCGCCTCCCAGTAATAATCAGAAATTGATTGTTGGGAGTAATATGTATGT
gi|1 : AAAGTAGAAAGAATACAGAGGACAGCATCTAGATATGTT----CTCAATAATTACGACT-TCACAAGCAGTGTCACCCAAA--CAT-----ATCAA-ATCTTAAACTGGCAAACTCTCCATCAAAGAAGAATAATTTCATCACTAATACT-ACTTTTTAAAATA-AAAAACAACCTAGTT-----GCTGTAGATCACCTCCATTTAATCCCAATAAAAATTCTGA-ATTTTCAGGTACATTTT--TCACAGACACAAAC----------TCATT-C-------TTCCCT---AGAACAATTAGAAATTGGAATAGCATACCAGGTTGCGTTAAACCCAGTACCAGCCGAAATCAGTTTATG------GCTGGACTGGCCACAGCAAAATTCTAAA--CAAGTCTTGTATTTTACACTAGAAATGTAG----TTATTTT-TA
gi|10 : aacaaagaaaatgctcatttctgcggaaaattccaaacaacaagcttattaatacagacactcagccacgattttaattcctcaacccaaactgtatagacaatataacatcaaaagcaaacaatacccttaaattcattaaaattaatatacaaacaaataataaaaagataaaagaaacatcctacgacacatgtgtgagacaataaatagaatactgttcgtccctggcaaaagacacaaacatacTATAACTTTGTTG-----TTTTT--AA---------ATTTCATATATCATAT-TTCGTTTTTTACT-TCTT-----CTTTTG------CTGTT-CCCCGAT--AGGACCTCCCAGTAATTATCAGAAATTAATTGTTGGGAGTAATA
gi|11 : CTTTGTTG-----TTTTT--AA---------AT---------CATAT-TTCATTTTTTACT-ATTT-----CTTTTA------CTGTT-CCACGAC--AGCGACTCCAAGTAATATTCAGAAAATGATTTTTTGTGGAAATATGTA
gi|12 : ATCAGAAATTGTTTGTTGGGAGTTATATGTAga
gi|13 : tactctctctacagtaatcttagagagcatcaattagGCGCCTCTTGGTTATAATCA--AATTTATTGCTGGGAGTACCATGTAgatgtt
gi|14 : GCCTCCCAGTAATAATCAGAAATTGATTGTTAGGAGTAATATTTAgatttatgtaga
gi|15 : tCCGAC--AGCGCCTCCCTGTAATACTCAGAATTTGATTATTAGGAGTGATgatcta
gi|16 : ttGCACCTCCCAGTAATAGTCAGAAATCGA----TGGGAGTAACAT
gi|17 : CAATAATAATCAGAAATTGATTGTTTGGAGTAATATGTAacagaat
gi|2 : GGAAGAGTTCAATGAACAGCTGTCAGGTATGTTATATCTGAATGATTACAATTACCAGAA-TAGTG------AAA--CATCCACGTTGAACACCT--AACTTGAAAACCCTCGGACATGGGCGACTAAAATCTTCTCTAAT-CT-ATTTCT----ATACAATT-AGATCTGG-----AC-TTGTTCATCATCCCCACCTTATCCCATCACGTATCCTGA-ATTATC-TG-ACCTCACAATCTTGCACCCAGTA----------TCATG-CAAATGGTTTTCCTCCAAAGACATTACGCGCCTGGAATAGCCTTCCAgg
gi|3 : aaataaaaaaatctttattaaaactgctgaaactgcaaactatttatgtatcaccaccagcaataatccaaattgtccaaagacacagataacattatacagacagctattatcactctcaatttcataaaactggtatacaaactagcaacataatattaaacagactgcctactatgtttatgtaggaccacagcttaccatccctggcaagaaaactaacatacgacgtAAAGTCGAAAGAATACAGAGGGCA-CAATTAGATATGTA----ATAAATGATTACGGCT-TCACAAACAGTGTCAC--AAAAATAT-----TTCAA-ATTTTAAAATTGCAAACCCAACATCAAATAAGAATAAATGCATCACTAAT-TTTGCTTT----------ACA-CAATTTACTTTACATGCTATATATCACC---GTTTAATTCCAATCAAAACTCTTAGATTTTCATGTACCTTTT--CCTTGAATCCTATA----------TCATCAC-------TTTTCT---AGGACAA------ATTGGAATAGCCTACCAAGTTATGTCAAAGTCAATACCAGCATCAATCAGTTTATG------GCTGGTCTGGTCTCAGTAAAATTCTGAA--CAAAGCTCATTTTTAATAATGAAAATGCAG----TAATGTT-TTAATTAAAATAC----AAGTATAGCTTTGTTG-----TTGTT--AA---------AC---------CATAT-TTCATTTTTTACT-ATTCA----CTATTACTACTCCTACT-CCCCGAC--AGCGCCTCCCAGTAATAGTCAGAAATTGATTGTTTGGAGTTATTTGTATATgatcaggtcctaggtacacccag
gi|4 : CCAAAAAAAATTCTAA-ATTTTCATAAACCTTTT--TCTCGGACCCTTTATCATCAGAACTCATT-C-------TTTCTT---AGAACAACCTGAAATTGAAATAGCCTACCAAGTTGTGTTAAAGCCATTACCAGCCTAAATCAGTTTACC------GCTAGTCTGGCAACAGTAAAATTCTAAA--CAGGTGTTGTTTTTAATGCTGGAAATGTAG----GGGGGTTGGGAATGAAAATAT----ATGTATAGCTTTGTTGTTGTTTTTTT--TA---------AC---------CATAT-TTCA-TTTTTATT-ATTTA-----TTTTG------CTGTT-CCCCGACAGAGAGTCTCCCAGTAATAATCAGAATTTGAGTGTTGGAAGTAATATGT
gi|5 : ----------TCATT-C-------TTCCCT---AGAACAATTAGAAATTTGAATAGCCTACCAAGTTGTGTTAAAGCCAGCACCAACCTAAATTAGTTTATG------GTTGGTCTGGCCACAGTAAATTTCTAAA--CAACTCTTGTTTTTAACACTAGACATGTAG----TTATTTT-TAAATGAAAATAT----ATGTATAACTTTGTTG-----TTTTT--AAATTCCATATAT---------CATAT-TTCATTTTTTACT-ATTT-----CTTTTG------CTGTT-CCCCGAT--AGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGTATGT
gi|6 : tatcagaac----------TCATT-C-------TTTCCT---AAAACAATCAGAAATCGGAatat
gi|6 : caccagagcAAATCGGATTATGTAAACAGCTGGTCTGGTCACAATCAAATTTTAAA--TAATTTCCATTTTTAACATAAGAAATGTAGAATTTTGTCTT-TAAATGAAAATAT----ATGTATAACTATGTTG-----TTTTT---A---------AC---------CATAT-TAATTTTTTTACT-GTTT-----CTTTTGC-----CTACT-CCCCGAC--AGTGCCTTCttatgtaaacagctggtctggtcacaatcaaattttaaataatttccatttttaacataagaaatgtagaattttgtctttaaatgaaaatatatgtataactatgttgtttttaaccatattaatttttttactgtttcttttgcctactccccgacagtgccttcttctgtgcaggggctcctatagagcatactcacacgttgtgaaactatatgtat
gi|7 : caccagagctcattctttcctaaaacaatcagTACTAAGTTATGGTAA-GCC--T-CCA--CTCAGCCAGTTT---------GCTA--CTAGCCACAAAGACATTCTAAAATCAGGTC-CGTTTGTAATAATAGTAATGTAG----TGGTAT---AAATATAAACATTATTATATATAGATTTCAT--------TTC--AA---------AC---------CATTC-TTCTTTTTGT-----TTTA---------G------CTGTTTCCCCAAC--AGCGCCTCCCACTTATAACCAGAAATTGATTATCGGAAATGCAATGTAttctgtgcaggggctcctatagagcatactcacacgttgtgaaactatatgtat
gi|8 : TGTATAGCTTAGTTG-----TTTTTTTAA---------AC---------CATAT-TTCATTTTTTACT-ATTT-----CTTATA------CTGTA-CTCCGAC--AGCACCTCCCAGTAATAATCAGAAATTGATTGTCAGGAGTAATATGTA
gi|9 : aatatgacatTATAGCTTCATTG-----TTTTT--AA---------ACTT-------CATATATTTTTTTTTTATTTAGTTAATATTTTTTG------CAGTT-CGCCGAC--AGCGCCTCTCGGTAATAATCAGAAATTGATTGTTGGGAGTAATATGCAga
blockSeqs : C G G ATAT G A A TCAC AA CCACG C T . T TATACAATTAGATCTGGAC C C C G A T AA AG TCATCAGAAC A AAATGGT CCA TAC AA G TAAACA AT A T A AATT A G G TATT TTGTT TT ATTCCATATAT A A T AATATT CTACTC T AG
blockSeqs : . A . A . . . . . . . . . ACACAATTTACTTTACATG T . T . A A . TA . . . . CCT AT G . . G T C . G G . . . . ACTT . A . AC C . .
blockSeqs : A . . . . TT . . . . TTA AG A . . C T C . T T . . . . AT . A . C . . .
blockSeqs : . . . . TCA . . . . T C T . T C . . . . AC . A . A . . .
blockSeqs : . . . . . . . G . A . G A . . . AC . T . C . . .
blockSeqs : . . AC . T . C . . .
blockSeqs : . . AC . A . A . . .
blockSeqs : . . AC . T . C . . .
blockSeqs : .
blockSeqCons : AC******************
originalCons : AAAGTNGAAAGAATACAGAGGACAGCANTTAGATATGTT----CTNAATGATTACGACT-TCACAAGCAGTGTCAC--AAA--CAT-----TTCAA-ATCTTAAACTTGCAAACCCTCCGTCAAAGAAGAATAAATTCATCACTAAT-CT-ACTTTT----ATA-AANA-CGATCTAGTT---ACGCTGTANATCACCCCCGTTTAATCCCAATAAAAATTCTGA-ATTTTCATGTACCTTTT--TCTCGGACCCNATA----------TCATT-C-------TTTCCT---AGAACAATCAGAAATTGGAATAGCCTACCAAGTTGTGTTAAAGCCAGTACCAGCCTAAATCAGTTTATG------GCTGGTCTGGCCACAGTAAAATTCTAAA--CAAGTCTCGTTTTTAACACTAGAAATGTAG----TNGTNTT-TAAATGAAAATAT----ATGTATAGCTTTGTTG-----TTTTT--AA---------AC---------CATAT-TTCATTTTTTACT-ATTTA----CTTTTG------CTGTT-CCCCGAC--AGCGCCTCCCAGTAATAATCAGAAATTGATTGTTGGGAGTAATATGTATGT
finalCons : AAAGTNGAAAGAATACAGAGGACAGCANTTAGATATGTT----CTNAATGATTACGACT-TCACAAGCAGTGTCAC--AAA--CAT-----TTCAA-ATCTTAAACTTGCAAACCCTCCGTCAAAGAAGAATAAATTCATCACTAAT-CT-ACTTTT----ATA-AANA-CGATCTAGTT---ACGCTGTANATCACCCCCGTTTAATCCCAATAAAAATTCTGA-ATTTTCATGTACCTTTT--TCTCGGACCCNATA----------TCATT-C-------TTTCCT---AGAACAATCAGAAATTGGAATAGCCTACCAAGTTGTGTTAAAGCCAGTACCAGCCTAAATCAGTTTATG------GCTGGTCTGGCCACAGTAAAATTCTAAA--CAAGTCTCGTTTTTAACACTAGAAATGTAG----TNGTNTT-TAAATGAAAATAT----ATGTATAGCTTTGTTG-----TTTTT--AAAC------------------CATAT-TTCATTTTTTACT-ATTTA----CTTTTG------CTGTT-CCCCGAC--AGCGCCTCCCAGTAATAATCAGAAATTGATTGTTGGGAGTAATATGTATGT
Alignments
lowQualScore : 2222 1 1 222222 11 33333 1 1 1 666666666666666666666666666666 1 1 11 2222222222 2222222 111 111111 1111 1111 11111 22222222222222222222 333333 111111
lowQualScore : 1 6 1 8888 1 3 2 111111 88 33333 3 7 0 3 3 444444444444444444444444444444 1 2 0 1 0 0 3 9 33 0 22 9999999999 6 1111111 111 888 0 44 0 3 999999 99 1 1 1 4444 1 1 6 7777 11111 66 88888888888888888888 4 1 4 000000 777777 4 55
lowQualScore : . . . .... . . . ...... .. ..... . . . . . .............................. . . . . . . . . .. . .. .......... . ....... ... ... . .. . . ...... .. . . . .... . . . .... ..... .. .................... . . . ...... ...... . ..
lowQualScore : 0 7 0 3333 0 3 0 333333 33 33333 3 3 7 3 3 000000000000000000000000000000 0 0 7 2 2 0 2 8 88 2 22 2222222222 7 7777777 777 777 8 00 8 2 222222 22 0 7 0 2222 0 0 7 0000 11111 11 00000000000000000000 4 3 4 666666 222222 4 55
consensus : AAAGTNGAAAGAATACAGAGGACAGCANTTAGATATGTT----CTNAATGATTACGACT-TCACAAGCAGTGTCAC--AAA--CAT-----TTCAA-ATCTTAAACTTGCAAACCCTCCGTCAAAGAAGAATAAATTCATCACTAAT-CT-ACTTTT----ATA-AANA-CGATCTAGTT---ACGCTGTANATCACCCCCGTTTAATCCCAATAAAAATTCTGA-ATTTTCATGTACCTTTT--TCTCGGACCCNATA----------TCATT-C-------TTTCCT---AGAACAATCAGAAATTGGAATAGCCTACCAAGTTGTGTTAAAGCCAGTACCAGCCTAAATCAGTTTATG------GCTGGTCTGGCCACAGTAAAATTCTAAA--CAAGTCTCGTTTTTAACACTAGAAATGTAG----TNGTNTT-TAAATGAAAATAT----ATGTATAGCTTTGTTG-----TTTTT--AA---------AC---------CATAT-TTCATTTTTTACT-ATTTA----CTTTTG------CTGTT-CCCCGAC--AGCGCCTCCCAGTAATAATCAGAAATTGATTGTTGGGAGTAATATGTATGT
Reference ( family-5399 ) : AAAGTNGAAAGAATACAGAGGACAGCANTTAGATATGTT----CTNAATGATTACGACT-TCACAAGCAGTGTCAC--AAA--CAT-----TTCAA-ATCTTAAACTTGCAAACCCTCCGTCAAAGAAGAATAAATTCATCACTAAT-CT-ACTTTT----ATA-AANA-CGATCTAGTT---ACGCTGTANATCACCCCCGTTTAATCCCAATAAAAATTCTGA-ATTTTCATGTACCTTTT--TCTCGGACCCNATA----------TCATT-C-------TTTCCT---AGAACAATCAGAAATTGGAATAGCCTACCAAGTTGTGTTAAAGCCAGTACCAGCCTAAATCAGTTTATG------GCTGGTCTGGCCACAGTAAAATTCTAAA--CAAGTCTCGTTTTTAACACTAGAAATGTAG----TNGTNTT-TAAATGAAAATAT----ATGTATAGCTTTGTTG-----TTTTT--AA---------AC---------CATAT-TTCATTTTTTACT-ATTTA----CTTTTG------CTGTT-CCCCGAC--AGCGCCTCCCAGTAATAATCAGAAATTGATTGTTGGGAGTAATATGTATGT
gi|1 : AAAGTAGAAAGAATACAGAGGACAGCATCTAGATATGTT----CTCAATAATTACGACT-TCACAAGCAGTGTCACCCAAA--CAT-----ATCAA-ATCTTAAACTGGCAAACTCTCCATCAAAGAAGAATAATTTCATCACTAATACT-ACTTTTTAAAATA-AAAAACAACCTAGTT-----GCTGTAGATCACCTCCATTTAATCCCAATAAAAATTCTGA-ATTTTCAGGTACATTTT--TCACAGACACAAAC----------TCATT-C-------TTCCCT---AGAACAATTAGAAATTGGAATAGCATACCAGGTTGCGTTAAACCCAGTACCAGCCGAAATCAGTTTATG------GCTGGACTGGCCACAGCAAAATTCTAAA--CAAGTCTTGTATTTTACACTAGAAATGTAG----TTATTTT-TA
gi|10 : aacaaagaaaatgctcatttctgcggaaaattccaaacaacaagcttattaatacagacactcagccacgattttaattcctcaacccaaactgtatagacaatataacatcaaaagcaaacaatacccttaaattcattaaaattaatatacaaacaaataataaaaagataaaagaaacatcctacgacacatgtgtgagacaataaatagaatactgttcgtccctggcaaaagacacaaacatacTATAACTTTGTTG-----TTTTT--AA---------ATTTCATATATCATAT-TTCGTTTTTTACT-TCTT-----CTTTTG------CTGTT-CCCCGAT--AGGACCTCCCAGTAATTATCAGAAATTAATTGTTGGGAGTAATA
gi|11 : CTTTGTTG-----TTTTT--AA---------AT---------CATAT-TTCATTTTTTACT-ATTT-----CTTTTA------CTGTT-CCACGAC--AGCGACTCCAAGTAATATTCAGAAAATGATTTTTTGTGGAAATATGTA
gi|12 : ATCAGAAATTGTTTGTTGGGAGTTATATGTAga
gi|13 : tactctctctacagtaatcttagagagcatcaattagGCGCCTCTTGGTTATAATCA--AATTTATTGCTGGGAGTACCATGTAgatgtt
gi|14 : GCCTCCCAGTAATAATCAGAAATTGATTGTTAGGAGTAATATTTAgatttatgtaga
gi|15 : tCCGAC--AGCGCCTCCCTGTAATACTCAGAATTTGATTATTAGGAGTGATgatcta
gi|16 : ttGCACCTCCCAGTAATAGTCAGAAATCGA----TGGGAGTAACAT
gi|17 : CAATAATAATCAGAAATTGATTGTTTGGAGTAATATGTAacagaat
gi|2 : GGAAGAGTTCAATGAACAGCTGTCAGGTATGTTATATCTGAATGATTACAATTACCAGAA-TAGTG------AAA--CATCCACGTTGAACACCT--AACTTGAAAACCCTCGGACATGGGCGACTAAAATCTTCTCTAAT-CT-ATTTCT----ATACAATT-AGATCTGG-----AC-TTGTTCATCATCCCCACCTTATCCCATCACGTATCCTGA-ATTATC-TG-ACCTCACAATCTTGCACCCAGTA----------TCATG-CAAATGGTTTTCCTCCAAAGACATTACGCGCCTGGAATAGCCTTCCAgg
gi|3 : aaataaaaaaatctttattaaaactgctgaaactgcaaactatttatgtatcaccaccagcaataatccaaattgtccaaagacacagataacattatacagacagctattatcactctcaatttcataaaactggtatacaaactagcaacataatattaaacagactgcctactatgtttatgtaggaccacagcttaccatccctggcaagaaaactaacatacgacgtAAAGTCGAAAGAATACAGAGGGCA-CAATTAGATATGTA----ATAAATGATTACGGCT-TCACAAACAGTGTCAC--AAAAATAT-----TTCAA-ATTTTAAAATTGCAAACCCAACATCAAATAAGAATAAATGCATCACTAAT-TTTGCTTT----------ACA-CAATTTACTTTACATGCTATATATCACC---GTTTAATTCCAATCAAAACTCTTAGATTTTCATGTACCTTTT--CCTTGAATCCTATA----------TCATCAC-------TTTTCT---AGGACAA------ATTGGAATAGCCTACCAAGTTATGTCAAAGTCAATACCAGCATCAATCAGTTTATG------GCTGGTCTGGTCTCAGTAAAATTCTGAA--CAAAGCTCATTTTTAATAATGAAAATGCAG----TAATGTT-TTAATTAAAATAC----AAGTATAGCTTTGTTG-----TTGTT--AA---------AC---------CATAT-TTCATTTTTTACT-ATTCA----CTATTACTACTCCTACT-CCCCGAC--AGCGCCTCCCAGTAATAGTCAGAAATTGATTGTTTGGAGTTATTTGTATATgatcaggtcctaggtacacccag
gi|4 : CCAAAAAAAATTCTAA-ATTTTCATAAACCTTTT--TCTCGGACCCTTTATCATCAGAACTCATT-C-------TTTCTT---AGAACAACCTGAAATTGAAATAGCCTACCAAGTTGTGTTAAAGCCATTACCAGCCTAAATCAGTTTACC------GCTAGTCTGGCAACAGTAAAATTCTAAA--CAGGTGTTGTTTTTAATGCTGGAAATGTAG----GGGGGTTGGGAATGAAAATAT----ATGTATAGCTTTGTTGTTGTTTTTTT--TA---------AC---------CATAT-TTCA-TTTTTATT-ATTTA-----TTTTG------CTGTT-CCCCGACAGAGAGTCTCCCAGTAATAATCAGAATTTGAGTGTTGGAAGTAATATGT
gi|5 : ----------TCATT-C-------TTCCCT---AGAACAATTAGAAATTTGAATAGCCTACCAAGTTGTGTTAAAGCCAGCACCAACCTAAATTAGTTTATG------GTTGGTCTGGCCACAGTAAATTTCTAAA--CAACTCTTGTTTTTAACACTAGACATGTAG----TTATTTT-TAAATGAAAATAT----ATGTATAACTTTGTTG-----TTTTT--AAATTCCATATAT---------CATAT-TTCATTTTTTACT-ATTT-----CTTTTG------CTGTT-CCCCGAT--AGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGTATGT
gi|6 : tatcagaac----------TCATT-C-------TTTCCT---AAAACAATCAGAAATCGGAatat
gi|6 : caccagagcAAATCGGATTATGTAAACAGCTGGTCTGGTCACAATCAAATTTTAAA--TAATTTCCATTTTTAACATAAGAAATGTAGAATTTTGTCTT-TAAATGAAAATAT----ATGTATAACTATGTTG-----TTTTT---A---------AC---------CATAT-TAATTTTTTTACT-GTTT-----CTTTTGC-----CTACT-CCCCGAC--AGTGCCTTCttatgtaaacagctggtctggtcacaatcaaattttaaataatttccatttttaacataagaaatgtagaattttgtctttaaatgaaaatatatgtataactatgttgtttttaaccatattaatttttttactgtttcttttgcctactccccgacagtgccttcttctgtgcaggggctcctatagagcatactcacacgttgtgaaactatatgtat
gi|7 : caccagagctcattctttcctaaaacaatcagTACTAAGTTATGGTAA-GCC--T-CCA--CTCAGCCAGTTT---------GCTA--CTAGCCACAAAGACATTCTAAAATCAGGTC-CGTTTGTAATAATAGTAATGTAG----TGGTAT---AAATATAAACATTATTATATATAGATTTCAT--------TTC--AA---------AC---------CATTC-TTCTTTTTGT-----TTTA---------G------CTGTTTCCCCAAC--AGCGCCTCCCACTTATAACCAGAAATTGATTATCGGAAATGCAATGTAttctgtgcaggggctcctatagagcatactcacacgttgtgaaactatatgtat
gi|8 : TGTATAGCTTAGTTG-----TTTTTTTAA---------AC---------CATAT-TTCATTTTTTACT-ATTT-----CTTATA------CTGTA-CTCCGAC--AGCACCTCCCAGTAATAATCAGAAATTGATTGTCAGGAGTAATATGTA
gi|9 : aatatgacatTATAGCTTCATTG-----TTTTT--AA---------ACTT-------CATATATTTTTTTTTTATTTAGTTAATATTTTTTG------CAGTT-CGCCGAC--AGCGCCTCTCGGTAATAATCAGAAATTGATTGTTGGGAGTAATATGCAga