lowQualScore : 111111111111111111111111111
lowQualScore : 111111 1 1 222222 1 1 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 1 1 9999999999999999999999999999999999999999 222222222222222222222222 1 1 111111111 22222222 1111 22222 11111 11 2222 11111 88888888888888888888888888888 777777777777777 222222222 1 000000000000000000000000000 333333333333 2222 1
lowQualScore : 7 888888 7 2 1 444444 55 555 2 4 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 1 4 66 1111111111111111111111111111111111111111 44 3 55 555555 4 22 5 1 000000000000000000000000 222 1 3333 4 1 33 5 22 8 0 6666666 7 5555 9999 44444 4 1 1 888888888 22 5 22 22222222 11 11 1 0 44444444 1 6666 1 1 11111 1 333 00000 1 44 1 3333 3333 3333 8888 2222 5555 4 11111 1 222 1 00000000000000000000000000000 555 44444 22 4 22 1 55 555555555555555 222222222 8 1 3 1 333 2 3 999999999999999999999999999 0 555555555555 2222 3 6 1 2
lowQualScore : . ...... . . . ...... .. ... . . ........................................................................................ . . .. ........................................ .. . .. ...... . .. . . ........................ ... . .... . . .. . .. . . ....... . .... .... ..... . . . ......... .. . .. ........ .. .. . . ........ . .... . . ..... . ... ..... . .. . .... .... .... .... .... .... . ..... . ... . ............................. ... ..... .. . .. . .. ............... ......... . . . . ... . . ........................... . ............ .... . . . .
lowQualScore : 8 777777 0 2 6 000000 00 888 8 7 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 5 1 88 2222222222222222222222222222222222222222 99 9 77 555555 2 00 9 4 111111111111111111111111 666 5 3333 0 5 88 0 33 5 8 7777777 9 1111 9999 33333 2 6 6 666666666 33 4 44 99999999 99 77 2 7 77777777 3 6666 5 5 00000 3 777 00000 4 99 5 1111 1111 4444 8888 9999 9999 3 66666 4 555 6 55555555555555555555555555555 222 22222 11 4 33 7 00 000000000000000 333333333 1 9 3 9 111 1 1 777777777777777777777777777 1 222222222222 7777 6 4 5 8
consensus : TGACAGGACGANGC---ACTAACTGACANAANT-GG-TG--GCAGGACAA---GGCACTAACTG-ACAAAATTG-GTGACAG---------------GA-------C-------------A-CA--------AN---T--G-G---------TGGCAGGACAAGGCNCTAACTG--A-CAAAATTGGTGGCAGGA--C----A-ATA---T-GGTGGCAGGACAAGGCACTAACT-GAC------ANA--ATTG-G----------------T-GG----CAG---GAC-AAG----GCACTAAC-T-GACAAA--ANTGGTGG-----CAGGA--CAA-GG-CACT-----AACTGAC-A-AAA--------TT--GGTG--GCAGGACAA-GGCAC--TA--ACTG-ACAAA--------ATTGG-TGGC--AGGAC-AAGGC-ACTAA--CTG-AC---A-NAA-TT-GG-TGGCAGGAC-A----AG----GC----A----C----T----GAC-----A-A---AATTGGTGG-CAG-TG--A-----G--C--------AAGG--CA-----CTAAC--TGAC--A-AAA--TC-GGT--GGC---AGGACAAGGCAC---T--AACTGACA-AAAT-TGGTG--GCAGGAC-AAGGCACTAACT---GAC--A-AAA--TNGGCG-GC---AGGACAAGGCACTAACT-GA-CAAAAT--TGG-TGGCAGGACAAGGCACTAACTGACAC
Reference ( gi|3 ) : TGACAGGGCAATGT---ACTTATTAACACAAAT-AA-TG--GCAGGACAA---GGCCCTTACTG-AGAACATTT-GTGGCAG---------------GA-------C-------------A-CA--------AA---T--G-G---------TGGCAGGACAAGGCCCTTACTG--A-AAACATTTGTGGCAGGA--C----ACATA---T-GGTAGCAGGACAAGACACTAATT-AAC------ACA--ACTG-G----------------T-TG----CAG---GAC-AAG----GCACTATC-T-AATAAA--AATGATAG-----CATGG--CAA-AA-CACT-----AAATGAC-A-AAT--------TT--GGCG--GCAGAGTAA-GTCAC--TA--ACTG-ACAAA--------ATTGG-TGAG--AGGAC-AAGGC-ACCAT--CTG-AC---A-CAG-TT-GT-TGGCAGGAC-A----AG----GC----A----C----T----GGC-----A-A---AATTGGTTG-CAG-TGTAA-----G--T--------AAGA--CA-----CTAAC--TGGC--A-AAA--TA-GAA--GGCCCTATGACAAGGAAC---A--AACCGACA-AATT-TGGTG--ACAGGAC-AAGACACTAACTAGCGGC--A-AAA--TAGAAA-GCCCTAGGACAAGGCACAAAAC-GA-ATAAAT--CTG-TGGCAGAACAAGACAATAACTGACAC
gi|11 : TGGCAGGACAAATC---ACAAACTAACA-AAATCGA-TG--ACAGGACGA---AGCACTAACTG-A----------------------------------------C-------------A-TA--------AT---T--G-A---------CGGCAAGACAAGGCCCTAACTG--A-CAAAAT---TGGC--GA----------------------CAGGACGAGGCACTTACT-AAT------ACA--ATTG-G----------------C-CA----CAG---GAC-AAGCAAAGCACT----T-GCTGAC--AAT-ATAGAAGGCCCTGGGCCAA-GG-CACT-----AACTG
gi|17 : acacaatctgTGACAGGACGAGGC---ACTAACTGACAAAAGC-AA-TG--ACAGGAAAA---GGCACTAACTA-ACAAAAAGG-ATGACAGATAAAGGCACTAAATGA-------C-------------A-TA--------AT---T--G-G---------TGGCAGGATAAGGCACTctaat
gi|12 : actgacaaaatcagTGACAG---AATATCACGCTAACTGACACAATT-TG-TG--GCAGAATAA---GGCGCTAACTG-ACACAATTT-GTGGCAGAATATGGCGCTAACTGA-------C-------------A-CA--------AA---T--A-G---------TGGAAGAAa
gi|20 : tagaaaagattatactagaaaatttgtatgatataattaaatttagtagaatatactgtaatagagtaactgacacaattagTGACAGGATGAGGC---ACTAACTAACAAAAGT----TA--AAAAGAAAA---TGCTCTTACTG-ACAAAATGT--TGACTG---------------GA-------t
gi|4 : ggttagactnnnnnnnnnnctaactgacaaaattggGACAGGACAATGC---ACTAACTAACACAA-T-AAGCG--ACAAGACGACACGGCATTAACTG-ACAAAAGTG-ATTGCAT---------------GAAAATGCAC-------------A-CACTGACATGAC---T--G-G---------TGGCAGGACAACAACATTATTGGCA-GGACAA----GGCACGAGCC----ATCTAAATT-GGTGTCAGGACAAGACACTAATC-ATC------ACA---CTA-A----------------G-TGA---CAGAGCGAC-AAG----GCACTAAC-T-AACAAA--TCTGATCG-----TAGGA--AAA-GG-CACT-----AACTTAC-A-AAA--------TT--GGTA--GCAGGATAA------------------CAAA--------ATTAG-TGGC--AGGAA-AATGC-A--ATTACTG-AC---AACA--TT-GG-TGACAGGAC-A----AG----GT----A----C----T----GAC-----T-A---AATCGGTGG-CAG-GACA------------------AAG---CA-----CTAAC--TGTC--A-AAA--TT-GGT--GACC---GGACAATGCACTATA--AACTGACA-AAAA-TAGTG--TCAGGAC-AATACACTAACT---GAC--A-AAaaagg
gi|13 : taactaaccaacaaaactgga---ACTAATTAACATAATT-GG-TT--GCAGGACAA---GGCACTAACTG-A-CACATTTGGTAGCAG---------------GA-------C-------------------------AA---T---------------------ACAA-----TCACTG--A-GAAAATCGGT-GCAGGA--C----A-ATG---T-ACTAAC-TGACAA------AATT--------------------G----------------C-TGT---CAG---GAC-AAT----ACATTAGC-T-GACTAA--ATGGAT-------TATGG---AA-A-----T-----AACTGAC-A-AAA--------TT--GG
gi|17 : ACTGACA-AAATCAG-TG--ACAGGACGA---GGCACTAACTG----------------------------------A-------C-------------A-AA--------AG---C--A-A---------TGACAGGAAAAGGCACTAACTA--ACAAAAA-----GG-ATGA--C----AGATA----------------AAGGCACTAAAT-GAC------ATA--ATTG-G----------------T-GG----CAG---GAT-AAG----GCACTA
gi|29 : ATTGACAAAATT-AG-TGTGGCAGGACAA---GGCACTAATTG-ACAAAATT
gi|19 : TGACAAAATT-TG-TG--GCAGGACAA---GACTCTAACTG-ACAGAATTG-GTGGCAT---------------GA-------CAAGGCTCTAACTGA-CA--------GAAT-T--G-G---------TGGCATGACAAGGCTCTAACTG--A-CAAAATTGGTGGCgg
gi|22 : CACAATT-GG-TG--GCAGGACAA---GGCACTAACTGAAAAAAAATG-GTGACAG---------------GA-------C-------------
gi|8 : actgg-TG--ACAGGACAA---GGCACTGACTG-TCAAAATTG-GTGACAG---------------GA-------C-------------A-AT--------AACATT--T-G---------TGACAGGACAAGGCACTGACTG--T-CAACATTGTTGGCAGGA--CAATAACAT----T-ATTGACAAGACAAGGCACTGATT-GTC------AAA--ATTG-GCAGCAGGACAATTACAT-TGTTGACAG---AAC-AAT----GCACTTTC-T-GACAAA--AGCGGTGG-----CATGA--CAA-AG-CACTTACTGACAAGAC-A-AAA--------TT--GGTG--ACAGAA------CAG--TA--AC----------------ATTGGATGAC--AGGAC-AAGGC-ACTAA--CTG-TC---A-AAA-AT-AG-TGACAGGAC-A----AA----GC----A----A----T----GACTGTA-A-A---AATTGGTGA-CAG-------------------------GA--CA-----ATAACATTGGT--A-Ataagattaataggctaagaatagatggaaaac
gi|1 : tttgacagaacagtatcattggCAGGACAA---TGCTCTAACAG-ACAAAATTG-GTGACAG---------------GA-------C-------------A-AAGC------AG---T--G-GCAAAACAGATGGCAAGACAATGCTCTAACAG--A-TAAAATTGGTGACAGGA--C----AAA-A---TCGGTGGTAGGAAAAGGCACTAACT-GACA-----AAA--ACTGCG-------------------A----CGG---GAT-AAA----GCACTGAC-T-GACAAA--AATGGCGA-----CAGGG--CAA-GA-CACT-----TACTG-----AAT--------TTTCAGC----CAGA------TCAT--TATTACTG-Acaggaaaag
gi|8 : TGACAG---------------AA-------C-------------AGTATC------AT---T--G-G---------TGACAGGACAAGGC----ACTG--A-------CTGT--CA----------AAAT----T-GGTGACAGGACAA---------T-AAC------AT-----TT-G----------------T-GA----CAG---GAC-AAG----GCACTGAC-T-GTCAAC--ATTGTTGG-----CAGGA--CAATAA-CATT-----AT-TGAC-A-A-----------------G--ACA-----A-GGCAC--TG--ATTG-TCAAA--------ATTGG-CAGC--AGGAC-AA------------TT-AC---A-----TT-GT-TGACAGAAC-A----AT----GC----A----C----TTTCTGAC-----A-A---AAGCGGTGG-CA--TG--------A--C--------AAAG--CA-----CTTAC--TGAC--A-AGA--CA-AAATTGG-----TGACA--GAAC---AGTAAC-------ATT-GGATG--ACAGGAC-AAGGCACTAACTGTCA----A-AAA--TAGTGA-----CAGGACAAAGCA-ATGACTGT-AAAAAT--TGG-TGACAG-----GACAATAACtgtcgttataacttattaaatataaaatataaagtgtgcctttttaaagaagatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacacaattaaatttaataatcattaaacgttatttctggaaaaccagatttatttatcaacatgtttataaactgtttgcaattttgagcggatttttacgaaatagtacgtactattatccgctggtccatgggggttaagtatttagcttgacatataataataaatattatttgataacttactcgaaaactttatatgccggaacatgtaaaccacaaggagagttctattatatatttagatagactagtcatttatgtggcatttctggctgatctttaaaaaaacatataattaaaccccaatgtaaactgctgacatcacaaacgaagcgataaaaaatgacaacaaacctgacatttgtttcagttaaatagatgccaatcattacatggatttgtccttgtgtttggaaatgttaggttattgtaactctaccctctatat
gi|19 : tt---------------GA-------C-------------A-AA--------AT---T--T-G---------TGGCAGGACAAGACTCTAACTG--A-------------CAGAA--T------------T-GGTGGCATGACAAGGCTCTAACT-GAC------AGA--ATTG-G----------------T-GG----CAT---GAC-AAG----GCTCTAAC-T-GACAAA--ATTGGTGG-----Cattggtaacaggaaaag
gi|12 : t---------------GA-------C-------------A-CA--------AT---T--T-G---------TGGCAGAATAAGGCGCTAACTG--A-CACAATTTGTGGCAGA----------ATA---T-GG-------------CGCTAACT-GAC------ACA--AATA-G----------------T-GG----AAG---AA
gi|12 : tagaaaagattatactagaaaatttgtatgatataattaaatttagtagaatatactgtaatagagtaactgacacaattagtgacagaatatcacgctaact---------------GA-------C-------------A-CA--------AT---T--A-G---------TGACAGAATATCACGCTAACTG--A-CACAATTTGTG---------------------------GCAGAATAAGGCGCTAACT-GAC------ACA--ATTT-G----------------T-GG----CAG---AAT-ATG----GCGCTAAC-T-GACACA--AATAGTGG-----t
gi|22 : tagaaaagattatactagaaaatttgtatgatataattaaatttagtagaatatactgtaatagagtaact---------------GG-------C-------------A-CA--------AT---T--G-G---------TGGCAGGACAAGGCACTAACTGA-A-AAAAAATGGTGACAGGA--C----TAAGA---T---TAATAGGCTAAGAaagaat
gi|29 : act---------------GA-------C-------------A--A--------AA---TTAGTG---------TGGCAGGACAAGGCACTAATTG--A-CAAAATTatagatggaaaac
gi|13 : attA-------C-------------A-TA--------AT---T--G-G---------TTGCAGGACAAGGCACTAACTG--A--------------------C----ACATT---T-GGTAGCAGGACAATACAATCACT-GAG------AAA--ATCG-G------------------TG----CAG---GAC-AAT----GTACTAAC-T-GACAAA--ATTGCTGT-----CAGGA--CAA-TA-CATT-----AGCTGACTA-AAT--------------------GGATTAT-GGAAA--TA--ACTG-ACAAA--------ATTGG-gg
gi|22 : actaattaGG--C----ACAAT---T-GGTGGCAGGACAAGGCACTAACTGAAA------AAA--AATG-G----------------T-GA----CAG---GACTAAG---------AT--T-AATAGGCTAAGAATAG------ATGG---AA-AA-C
gi|21 : actA--C----AAAAA---T-GTTTACAGGACAAAGCACTAA-----C------ACA--ACCA-G----------------T-CC----CAG---GAC-AAT----GTATTGAC-T-GGCAAC--CGTGATAA-----C-TGG--AAC-TA-CATT-----AACTGAC-A-AA
gi|19 : acaacttactcGTGGCAGGACAAGACTCTAACT-GAC------AGA--ATTG-G----------------T-GG----CAT---GAC-AAG----GCTCTAAC-T-GACAGA--ATTGGTGG-----CATGA--CAA-GG-CTCT-----AACTGAC-A-AAA--------TT--GGTG--GC
gi|17 : tgacaaaatttGTGACAGGACGAGGCACTAACT-GAC------AAA--AGCA-A----------------T-GA----CAG---GAA-AAG----GCACTAAC-T-AACAAA--AAGGATGA-----CA-GA--TAA-AGGCACT-----AAATGAC-A-TAA--------TT--GGTG--GCAGGATAA-GGCAC--TA--
gi|29 : actgacaaaatcaGTGGCAGGACAAGGCACTAATT-GAC------AAA--ATTG-G----------------
gi|1 : attgacaaaattagtCAGGACAATGCTCTAACA-GAC------AAA--ATTG-G----------------T-GA----CAG---GAC-AAA----GCAGTGGC------AAA--ACAGATGG-----CAAGA--CAA-TG-CTCT-----AACAGAT-A-AAA--------TT--GGTG--ACAG--------------------G-ACAAA--------ATCGG-TGGT--AGGAA-AAGGC-ACTAA--CTG-ACA--A-AAA-CT-G--CGACGGGAT-A----AA----GCACTGA----C----T----GAC-----A-A---AAATGGCGA-CAG-----G-----G--C--------AAGA--CA-----CTTAC--TG
gi|28 : CAAGTCACGAACG-AAC------ACA--ATTG-G----------------T-TG----CAG---GTC-ATG----GCACTACC-T-GACAAaattttcagccagatcattattactgatgtcgttataacttattaaatataaaatataaagtgtgcctttttaaagaagatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacacaattaaatttaataatcattaaacgttatttctggaaaaccagatttatttatcaacatgtttataaactgtttgcaattttgagcggatttttacgaaatagtacgtactattatccgctggtccatgggggttaagtatttagcttgacatataataataaatattatttgataacttactcgaaaactttatatgccggaacatgtaaaccacaaggagagttctattatatatttagatagactagtcatttatgtggcatttctggctgatctttaaaaaaacatataattaaaccccaatgtaaactgctgacatcacaaacgaagcgataaaaaatgacaacaaacctgacatttgtttcagttaaatagatgccaatcattacatggatttgtccttgtgtttggaaatgttaggttattgtaactctaccctctatat
gi|13 : ACTAATT-AAC------ATA--ATTG-G----------------T-TG----CAG---GAC-AAG----GCACTAAC-T-GACACA--TTTGGTAG-----CAGGA--CAA-TA-CAAT-----CACTGAG-A-AAA--------TC--GGT---GCAGGACAATGT-AC--TA--ACTG-ACAAA--------ATTGC-TGTC--AGGAC-AATAC-ATTAG--CTG-ACTAAA-TGGATT-A--TGGAA--AT-A----------------A----C----T----GAC-----A-A---AATTGG
gi|2 : ACTAATT-GACAAATTGACATCATTG-G----------------T-GG----CAG---AAC-AAG----GTACTA
gi|20 : CTAACT-GAC------AAA--ATTG-G----------------T-GA----CAG---GAT-GAG----GCACTAAC-T-AACAAA--AGTgttgccgaaagtatactaaatgatgtgttcaacctaatgatcgtttactgatgtcgtcatagtttattcaattttaaagaagatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatacaagtatgtacatattatattatgcactatacgctatttatggaaaatcagatttatcaacatgtgacagttaagatactgttttcctaatttgagtagttaacgatatattttgatgaaatagtaagtattatccgctggtcaatgcggattaaacattagtattttgcgtgagatataaaaataactacatgtgtatttttaataacatgctagaaaactttgagtatcggtactgcttgtaaaacacatatcttatactttatacatagcttgtctatgaaacaaacatgtaacagaaacctccttttaaattaatgacctgtaaaccaatcgatttcaatttaaaaaaatagaagaaaaacaaactcgatatttgtctcatttgaaataatgacagttatttactaagatttgtcttagtgcttgaaaccattatttggattttgaaggttgtagtaactctgccctcaacatgaaacatgcaacacccctcgctgccactattac
gi|12 : ggttagactnnnnnnnnnnTAACT-GAC------ACA--ATTA-G----------------T-GA----CAG---AAT-ATC----ACGCTAAC-T-GACACA--ATTTGTGG-----CAGAA--TAA-GG-CGCT-----AACTGAC-ACAAT--------TT--G-TG--GCAGAATAT-GGCGC--TA--ACTG-ACACA--------AATAG-TGGA--AGAAtaaaaagaaaatgctcttactgacaaaatgttgactggaaaagg
gi|17 : tagaaaagattatactagaaaatttgtatgatataattaaatttagtagaatatactgtaatagagACT-GAC------AAA--ATCA-G----------------T-GA----CAG---GAC-GAG----GCACTAAC-T-GACAAA--AGCAATGA-----CAGGA--AAA-GG-CACT-----AACTAAC-A-AAA--------AG--GATG--ACAGATAAA-GGCAC--TA--AATG-ACATA--------ATTGG-TGGC--AGGAT-AAGGC-ACTAt
gi|29 : ATT-GAC------AAA--ATTA-G----------------TGTGG---CAG---GAC-AAG----GCACTAAT-T-GACAAA--ATTG
gi|19 : T-GAC------AAA--ATTT-G----------------T-GG----CAG---GAC-AAG----ACTCTAAC-T-GACAGA--ATTGGTGG-----CATGA--CAA-GG-CTCT-----AACTGAC-A-GAA--------TT--GGTG--GCATGACAA-GGCTC--TA--ACTG-ACAAA--------ATTGG-TGg
gi|26 : T-GAC------ACA--ATTG------------------T-TGA---CAG---AAC-AAG----GCACTAGCAT-AATAAgc
gi|11 : taccAC------ACA--ATCT-G----------------T-GG----CAG---GAC-AAA----TCACAAAC-T-AACAAA--ATCGATGA-----CAGGA--CGA-AG-CACT-----AACTGAC-A-TAA--------TT--GACG--GCAAGACAA-GGCCC--TA--ACTG-ACAAA--------ATTGG-CGAC--AGGAC-GAGGC-ACTTA--CTA-AT---A-CAA-TT-GG-CCACAGGAC-A----AGCAAAGC----ACTTGC----T----GAC-----A-A---TATAGAAGG-CCC-TG--G-----GC-C--------AAGG--CA-----CTAAC--TGgtggctggaaaagaca
gi|22 : C------ACA--ATTG-G----------------T-GG----CAG---GAC-AAG----GCACTAAC-TGAAAAAA--AATGGTGA-----CActaat
gi|17 : actggC-T-GACAAA--ATCAGTGA-----CAGGA--CGA-GG-CACT-----AACTGAC-A-AAA--------GC--AATG--ACAGGAAAA-GGCAC--TA--ACTA-ACAAA--------AAGGA-TGAC--AGATA-AAGGC-ACTAA--ATG-AC---A-TAA-TT-GG-TGGCAGGAT-A----AG----GC----A----C----T----ggactaagattaataggctaagaatagatggaaaac
gi|19 : a-T-GACAAA--ATTTGTGG-----CAGGA--CAA-GA-CTCT-----AACTGAC-A-GAA--------TT--GGTG--GCATGACAA-GGCTC--TA--ACTG-ACAGA--------ATTGG-TGGC--ATGAC-AAGGC-TCTAA--CTG-AC---A-AAA-TT-GG-TGGCa
gi|11 : TGG-----CAGGA--CAA-AT-CACA-----AACTAAC-A-AAA--------TC--GATG--ACAGGACGA-AGCAC--TA--ACTG-ACATA--------ATTGA-CGGC--AAGAC-AAGGC-CCTAA--CTG-AC---A-AAA-TT-GG-CGACAGGAC-G----AG----GC----A----C----T----TACT----A-ATACAATTGGCCA-CAG-GACAA-----G--C--------AAAG--CA-----CTTGC--TGAC--A-ATA--TA-GAA--GGCCCTGGGCCAAGGCAC---T--AACTG
gi|13 : acacaatctgACT-----AATTAAC-A-TAA--------TT--GGTT--GCAGGACAA-GGCAC--TA--ACTG-ACACA--------TTTGG-TAGC--AGGAC-AATACAATCA---CTG-AG---A-AAA-TC-GG-T-GCAGGAC-A----AT----GTACTAA----C----T----GAC-----A-A---AA----TTG-C---TGTCA-----GGAC--------AATA--CA-----TTAGC--TGAC--T-AAA--TG-GA-------TTAT-----GGAAA---T--AACTGACA-AAAT-TGGctaat
gi|2 : ACT-----AATTGAC-A-AATTGACATCATT--GGTG--GCAGAACAA-GGTAC--TA--GTTG-CCGAA--------A
gi|20 : CT-----AACTGAC-A-AAA--------TT--GGTG--ACAGGATGA-GGCAC--TA--ACTA-ACAAA--------A--GT-TAAA--AAGAA-AATGC-TCTTA--CTG-AC---A-AAA--T-GT-TGACTGGAA-A----AG----Ggtatactaaatgatgtgttcaacctaatgatcgtttactgatgtcgtcatagtttattcaattttaaagaagatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatacaagtatgtacatattatattatgcactatacgctatttatggaaaatcagatttatcaacatgtgacagttaagatactgttttcctaatttgagtagttaacgatatattttgatgaaatagtaagtattatccgctggtcaatgcggattaaacattagtattttgcgtgagatataaaaataactacatgtgtatttttaataacatgctagaaaactttgagtatcggtactgcttgtaaaacacatatcttatactttatacatagcttgtctatgaaacaaacatgtaacagaaacctccttttaaattaatgacctgtaaaccaatcgatttcaatttaaaaaaatagaagaaaaacaaactcgatatttgtctcatttgaaataatgacagttatttactaagatttgtcttagtgcttgaaaccattatttggattttgaaggttgtagtaactctgccctcaacatgaaacatgcaacacccctcgctgccactattac
gi|12 : ggttagactnnnnnnnnnnT-----AACTGAC-A-CAA--------TT--AGTG--ACAGAATA---TCACGCTA--ACTG-ACACA--------ATTTG-TGGC--AGAAT-AAGGC-GCTAA--CTG-AC---A-CAA-TT-TG-TGGCAGAAT-A----TG----GCGCTAA----C----T----GAC-----ACA---AAT
gi|19 : tagaaaagattatactagaaaatttgtatgatataattaaatttagtagaatatactgtaatagagTGAC-A-AAA--------TT--TGTG--GCAGGACAA-GACTC--TA--ACTG-ACAGA--------ATTGG-TGGC--ATGAC-AAGGC-TCTAA--CTG-AC---A-GAA-TT-GG-TGGCATGAC-A----AG----GCTCTAA----C----T----GAC-----A-A---AATTGGTGG-Cagtggaagaat
gi|22 : TGGC-A-CAA--------TT--GGTG--GCAGGACAA-GGCAC--TA--ACTGAAAAAA--------AATGG-TGAC--AGGACTAAG
gi|29 : acTGAC-A-AAA--------TT--AGTGTGGCAGGACAA-GGCAC--TA--ATTG-ACAAA--------ATTGG-attaataggctaagaatagatggaaaac
gi|28 : atAA-GTCAC--GA--ACGA-ACACA--------ATTGG-TTGC--AGGTC-ATGGC-ACTAC--CTG-AC---A-
gi|13 : cAC--TA--ATTA-ACATA--------ATTGG-TTGC--AGGAC-AAGGC-ACTAA--CTG-AC---A-CAT-TT-GG-TAGCAGGAC-AATACAA----TC----A----C----T----GAG-----A-A---AATCGG-TG-CAG-GACAAT----G--T---------------A-----CTAAC--TGAC--A-AAA--Ta
gi|21 : AC--TT--ACTC-ACAAA--------AATGT-TTAC--AGGAC-AAAGC-ACTA-------AC---A-CAA-CC-AG-TCCCAGGAC-A----AT----GT----ATTGAC----T----GGC-----A-A---CCGTGATAA-C---TGGAA-----C--T-----------A--CA-----TTAAC--TGAC--A-AAtgctgtcaggacaatacattagctgactaaatggattatggaaataactgacaaaattgg
gi|2 : acaAC--TA--ATTG-ACAAATTGACATCATTGG-TGGC--AGAAC-AAGGT-ACTA
gi|1 : C--TA--ACAG-ACAAA--------ATTGG-TGAC--AGGAC-AAAGC-A------GTG-GC---A-AAA-CA-GA-TGGCAAGAC-A----AT----GCTCTAA----C----A----GAT-----A-A---AATTGGTGA-CAG-GACAAAATCGG--TGGTAGGAAAAGG--CA-----CTAAC--TGAC--A-AAAACTGCGAC--GG------GATAAAGCAC---T--GACTGACA-AAAA-TGGCG--ACAGGGC-AAGACACTTACTgttgccgaaagtatactaaatgatgtgttcaacctaatgatcgtttactgatgtcgtcatagtttattcaattttaaagaagatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatacaagtatgtacatattatattatgcactatacgctatttatggaaaatcagatttatcaacatgtgacagttaagatactgttttcctaatttgagtagttaacgatatattttgatgaaatagtaagtattatccgctggtcaatgcggattaaacattagtattttgcgtgagatataaaaataactacatgtgtatttttaataacatgctagaaaactttgagtatcggtactgcttgtaaaacacatatcttatactttatacatagcttgtctatgaaacaaacatgtaacagaaacctccttttaaattaatgacctgtaaaccaatcgatttcaatttaaaaaaatagaagaaaaacaaactcgatatttgtctcatttgaaataatgacagttatttactaagatttgtcttagtgcttgaaaccattatttggattttgaaggttgtagtaactctgccctcaacatgaaacatgcaacacccctcgctgccactattac
gi|12 : caggacaatgct--TA--ACTG-ACACA--------ATTAG-TGAC--AGAAT-ATCAC-GCTAA--CTG-AC---A-CAA-TT-TG-TGGCAGAAT-A----AG----GCGCTAA----C----T----GAC-----A-C---AATTTGTGG-CAG-----A-----A--T--------ATGG--CG-----CTAAC--TGAC--ACAAA--TA-Ggaattttcagccagatcattattactgatgtcgttataacttattaaatataaaatataaagtgtgcctttttaaagaagatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacacaattaaatttaataatcattaaacgttatttctggaaaaccagatttatttatcaacatgtttataaactgtttgcaattttgagcggatttttacgaaatagtacgtactattatccgctggtccatgggggttaagtatttagcttgacatataataataaatattatttgataacttactcgaaaactttatatgccggaacatgtaaaccacaaggagagttctattatatatttagatagactagtcatttatgtggcatttctggctgatctttaaaaaaacatataattaaaccccaatgtaaactgctgacatcacaaacgaagcgataaaaaatgacaacaaacctgacatttgtttcagttaaatagatgccaatcattacatggatttgtccttgtgtttggaaatgttaggttattgtaactctaccctctatat
gi|26 : tagaaaagattatactagaaaatttgtatgatataattaaatttagtagaatatactgtaatagag--TA--CCTG-ACACA--------ATTGT-TGAC--AGAAC-AAGGC-A------CTA-GC---A-TAA-TA-AG-TGGCTGGAA-A----AG----AC----A----tggaagaat
gi|17 : --ACTG-ACAAA--------ATCAG-TGAC--AGGAC-GAGGC-ACTAA--CTG-AC---A-AAA-GC-AA-TGACAGGAA-A----AG----GC----A----C----T----AACTAACAA-A---AA--GGATGACAG--ATA------------------AAGG--CA-----CTAAA--TGAC--A-TAA--TT-GGT--GGC---AGGATAAGGCAC---
gi|22 : --ACTG-GCACA--------ATTGG-TGGC--AGGAC-AAGGC-ACTAA--CTGAAA---A-AAA-AT-GG-TGACAGGACTA----AG----ta
gi|29 : --ATTG-ACAAA--------ATTAG-TGTGGCAGGAC-AAGGC-ACTAA--TTG-AC---A-AAA-TT-Gattaataggctaagaatagatggaaaac
gi|19 : TG-ACAAA--------ATTTG-TGGC--AGGAC-AAGAC-TCTAA--CTG-AC---A-GAA-TT-GG-TGGCATGAC-A----AG----GCTCTAA----C----T----GAC-----A-G---AATTGGTGG-CA--TG--------A--C--------AAGG--CT-----CTAAC--TGAC--A-AAA--Tg
gi|1 : --AGGAC-AATGC-TCTAA--CAG-AC---A-AAA-TT-GG-TGACAGGAC-A----AA----GC----A----G----T----GGC-----A-A---AA--------CAGATG--------G--C--------AAGA--CAATGCTCTAAC--AGAT--A-AAA--TT-G----------GTGACAG---------------GACA-AAAT-CGGTG--GTAGGAA-AAGGCACTAACT---GAC--A-AAA-----ACT-GCGACGGGATAAAGCACTGACT-GACAAAAAT---GG-CGACAGGGCAAGACACTTACTGAtggtggc
gi|26 : cAC--CTG-AC---A-CAA-TT-GT-TGACAGAAC-A----AG----GC----A----C----T----AGC-----A-T---AATAAGTGG-C---TGGAA-----------------AAGA--CA-----attttcagccagatcattattactgatgtcgttataacttattaaatataaaatataaagtgtgcctttttaaagaagatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacacaattaaatttaataatcattaaacgttatttctggaaaaccagatttatttatcaacatgtttataaactgtttgcaattttgagcggatttttacgaaatagtacgtactattatccgctggtccatgggggttaagtatttagcttgacatataataataaatattatttgataacttactcgaaaactttatatgccggaacatgtaaaccacaaggagagttctattatatatttagatagactagtcatttatgtggcatttctggctgatctttaaaaaaacatataattaaaccccaatgtaaactgctgacatcacaaacgaagcgataaaaaatgacaacaaacctgacatttgtttcagttaaatagatgccaatcattacatggatttgtccttgtgtttggaaatgttaggttattgtaactctaccctctatat
gi|20 : t--CTG-AC---A-AAA-TT-GG-TGACAGGAT-G----AG----GC----ACTAAC----T----AAC-----A-A---AA---GTTA-AA-----AA-----G-----------AAAATGCT-----CTTAC--TGAC--A-AAA--T
gi|22 : ggttagactnnnnnnnnnnctaa--CTG-GC---A-CAA-TT-GG-TGGCAGGAC-A----AG----GC----A----C----T----AACTGAAAA-A---AAATGGTGA-CAG----GA-----C--T--------AAG----A-----TTAAT--AGGCTAA-GAA--TA-GAT--GGgttgactggaaaagg
gi|13 : aTA-AC---A-TAA-TT-GG-TTGCAGGAC-A----AG----GC----A----C----TAACTGAC-----A-C---ATTTGGTAG-CAG-----G-----A--C--------AATA--CA-----ATCAC--TGAG--A-AAA--TC-GGT--G----CAGGACAATGTAC---T--AACTGACA-AAAT-TGCTG--TCAGGAC-AATACATTAGCT---GAC--T-AAA--TGGAaaaac
gi|19 : actaatTG-AC---A-AAA-TT-TG-TGGCAGGAC-A----AG----ACTCTAA----C----T----GAC-----A-G---AATTGGTGG-CA--TG--------A--C--------AAGG--CT-----CTAAC--TGAC--A-GAA--TT-GGT--GGC---ATGACAAGGCTC---T--AACTGACA-AAAT-TGGTG--GCttatggaaataactgacaaaattgg
gi|29 : TG-AC---A-AAA-TTAGTGTGGCAGGAC-A----AG----GC----A----CTAATT----GAC-----A-A---AATTGG
gi|17 : at----A----C----T----GAC-----A-A---AATCAGTGA-CAG-----G-----A--C--------GAGG--CA-----CTAAC--TGAC--A-AAA--GC-AAT--GAC---AGGAAAAGGCAC---T--AACTAACA-AAAA-GGATG--ACAGATA-AAGGCACTAAAT---GAC--A-TAA--TTGGTG-GC---AGGATAAGGCAC
gi|12 : ----A----C----T----GAC-----A-C---AATTAGTGA-CAG-----A-----A--T--------ATCA--CG-----CTAAC--TGAC--A-CAA--TT-TGT--GGC---AGAATAAGGCGC---T--AACTGACACAATT-T-GTG--GCAGAAT-ATGGCGCTAACT---GAC--ACAAA--TAGta
gi|20 : tagaaaagattatactagaaaatttgtatgatataattaaatttagtagaatatactgtaatagagta----A----C----T----GAC-----A-A---AATTGGTGA-CAG-----G-----A--T--------GAGG--CA-----CTAAC--TAAC--A-AAAGTTA-AAA--AGtggaagaat
gi|29 : ggttagactnnnnnnnnnncta----A----T----T----GAC-----A-A---AATTAGT-----G-TGGCA-----GGAC--------AAGG--CA-----CTAAT--TGAC--A-AAA--Taaaatgctcttactgacaaaatgttgactggaaaagg
gi|19 : ----T----GAC-----A-A---AATTTGTGG-CAG-----G-----A--C--------AAGA--CT-----CTAAC--TGAC--A-GAA--TT-GGT--GGC---ATGACAAGGCTC---T--AACTGACA-GAAT-TGGTG--GCATGAC-AAGGCTCTAACT---GAC--A-AAA--Ttgg
gi|17 : AC--TGAC--A-AAA--TC-AGT--GAC---AGGACGAGGCAC---T--AACTGACA-AAAG-CAATG--ACAGGAA-AAGGCACTAACTA---AC--A-AAA---AGGAT-GAC--AGATAAAGGCACTAAAT-GACAT-AAT--TGG-TGGCAGGATAAGGCACTAtggtggc
gi|22 : AC--TGGC--A-CAA--TT-GGT--GGC---AGGACAAGGCAC---T--AACTGAAA-AAAAATGGTG--ACAGGACTAAG--ATTAA-TA--GGCTAA-GAA--TAGA
gi|19 : --TGAC--A-AAA--TT-TGT--GGC---AGGACAAGACTC---T--AACTGACA-GAAT-TGGTG--GCATGAC-AAGGCTCTAACT---GAC--A-GAA--TTGGTG-GC---ATGACAAGGCTCTAACT-GA-CAAAAT--TGG-TGGCtggaaaac
gi|11 : GACAAATCAC---A--AACTAACA-AAAT-CGATG--ACAGGAC-GAAGCACTAACT---GAC--A-TAA--TTGACG-GC---AAGACAAGGCCCTAACT-GA-CAAAAT--TGG-CGACAGGACGAGGCACTTACTAATAC
gi|13 : acacaatctgtggcagGACAAGGCAC---T--AACTGACA-CATT-TGGTA--GCAGGAC-AATACAATCACT---GAG--A-AAA--TCG----GTGC-AGGACAATGTACTAACT-GA-CAAAATTGCTG-T--CAGGACAATACATTAGCTGACaattggccacaggacaagcaaagcacttgctgacaatatagaaggccctgggccaaggcactaactgctaat
gi|12 : actaattaacataattggttgcag--AACTGACA-CAAT-TAGTG--ACAGAAT-ATCACGCTAACT---GAC--A-CAA--TTTGTG-GC---AGAATAAGGCGCTAACT-GA-CACAAT--TTG-TGGCAGAATATGGCGCTAACTGACACtaaatggattatggaaataactgacaaaattgg
gi|20 : tagaaaagattatactagaaaatttgtatgatataattaaatttagtagaatatactgtaatagagt--AACTGACA-AAAT-TGGTG--ACAGGAT-GAGGCACTAACTA---AC--A-AAAGTTAAAAA-Gaaatagtggaagaat
gi|17 : ggttagactnnnnnnnnnnctACTGACA-AAAT-CAGTG--ACAGGAC-GAGGCACTAACT---GAC--A-AAA----GCAATGAC--AGGAAAAGGCAC-TAAC-TA-ACAAAA--AGGATGACAGATAAAGGCACTAAATGACAaaaatgctcttactgacaaaatgttgactggaaaagg
gi|22 : ACTGGCA-CAAT-TGGTG--GCAGGAC-AAGGCACTAACTtaattggtggcaggataaggcacta
gi|19 : GACA-AAAT-TTGTG--GCAGGAC-AAGACTCTAACT---GAC--A-GAA--TTGGTG-GC---ATGACAAGGCTCTAACT-GA-CAGAAT--TGG-TGGCATGACAAGGCTCTAACTGACAgaaaaaaaatggtgacaggactaagattaataggctaagaatagatggaaaac
gi|29 : tGACA-AAAT-TAGTGTGGCAGGAC-AAGGCACTAATT---GAC--A-AAA--Taaattggtggc
gi|22 : attAAT--TGG-TGGCAGGACAAGGCACTAACTGAtgg
gi|29 : actggcacTG-TGGCAGGACAAGGCACTAATTGACAaaaaaaatggtgacaggactaagattaataggctaagaatagatggaaaac
13 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|5 ): GGTGATTGTAGTAGTAGTGGTAGAACCCCCTCTTGTAAATTGATAACCTGACAAATCATGCGATTAAAATTCAAAAATAATAAATAAAATCGACCCTTATACTCATTTCAGTTGAATTGATGACAAGCAGTCTAGTACTTGTCCTCGTGCTTGAAATTATTATTTGGATTTTGAAGGAAGTAGTCACTCTATAGTAATTCATATCAAATGTGCCACACTTCTTATATCAGTACCACGATTCCAAGAAAGCAGAAATAATAATAACACTGGAGAGGCACAATTCTGTATTAAATCTGACAACGGACAATCAAAACATAATATGTATCACTTGTTTTCAACGGAACAGTTGTGTAACACTTGACGATTCTGTTATTCCCAGACTGGTTACAACATCCCATTTGATGACATTGAACTTTGAACCGACTAGACAAGATAC
Unaligned ( gi|6 ): ACCCCCTCTTGTAAATTGATAACCTGACAAATAAAGCGATTAAAAATAAAAAAAATAATAAATAAAAGCGACCCTAATACTCATTTCAGTTAAATTGATGACAAGCAGTCAAGGACTTGTTCTCGTGCTTGAAAATATTATTTGGATTTAGAAGGAAGTAGTCACTCTATAGTAATTCATATGAAACGTGCAACACCCCTCATATCAGTTCCGTGATTCCAAGAAAGCCGAAATAATAATAACACTGGAGAGGCAAAATTCTTACTGTCATAAATCTGACAACGGACAATCAAAACATAATATATATCACTTGTTTTTTCGACAGAACGGTTGTGTAACATTTGACGATTCTGTAATTCCCAGACTGGTTACATCCCATTTGATGACATGTAACTTTGAACCGACTAGACAAGATAACTTATTACAAAGACAAAA
Unaligned ( gi|7 ): GTAAATTATGACCTGACAAATAAAGCGATTAAAATTTCAAAAATAATAAATAAAAGCGACCCTAATACTCATTTCATTTAAACTGATGACAAGCAATCTTGGACTTGATCTCGTGCTCGAAAATATTATTTGGATTTAGATGGAAGTAGTCACTCTATAGAAATTCATATTAAACGTGCAACACTCCTCATATAAGTTCCATTATTCCAAGAAAGCAGAAATAAAAATAACACTGGCGAGGCAAAATTCTAACTGTCTTAAATCTGACAACGGACAATCAAAACATAATATGTATCACATGGTTGGGTAACACTTGACGCTTCTGTTATTCCCAGACTGATTACATCCAAGTTGATGAAATGTAACTTTGAACCGACTAGACAAGATAACTTATTGCAAAGACAAAATGT
Unaligned ( gi|9 ): ACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCACCATATACAATAATGTTTAAATTTTAAATTAATTATATACTATCTGTTATTTCTGGAAAACCAGACTTATTTATCAA
Unaligned ( gi|10 ): TAAATTTATTATGCACTATACGTTATTTCTAGTAAACCAGATTAATTTATTTAATCAACATGTGACATATTAAATACTATTACCCATTTTGAGCAGTCAACTATGCATTTTGGTTAAATAGTATGATCTATTATCAGCTGGTCTTTGGCGATTATACAATAGTATTTTGCATGAGATATAATAGCTATTATTTAATAACTTGCCAGAAAACTTTATCAGAATAT
Unaligned ( gi|14 ): CTGGAAAGACAAGTTTTATGACAACTGGCAATCAAAGCATTTTAGATGCGAAGCTTGTGTGCCATATGTCCATTCTGTTATTTCCAGACTGGTTACCTGTCATCAGAGGACATACAACTAGACAAGATATATTG
Unaligned ( gi|15 ): AACGGTCATAAATCTGACAACGGGCAATTAATGACGCAAGGGTCCATTCTGTTTTTTTCAGCCGGGTTACATATCATTTGAGGACATATAACTTTGTACCAGCGTTACAAGATAACTGAATACATAGACAAAA
Unaligned ( gi|16 ): TAATATTTGTTTCAGTTAAATTGATGACTAACATTCCAAGAATTTGTTCTAATGCTTGAAAATTATATTTAGATTTAGAAGGTTGTTGTAACTCTGACGTGCATATAGAACGGGCAACAATTTTGTATATA
Unaligned ( gi|18 ): ATATGATAGACCCTTCTTGTAAATTGCTGACCCCACAAACAAGCGATTAAAATTTAAAAAATAAAAAATAAAAACAAACCTGATACTTATTTCAGTTAAATTGATGACCAAAATT
Unaligned ( gi|23 ): TTCACGATTCCAAAAAATCAGAAATAATAACAACACGAAAGACAAAATTCCAATGGACTTGAATTTGACAACGGACAAAC
Unaligned ( gi|24 ): TATCTACTGCAGCGGTTGAAATACGAAAGACTGTTTCCCGCTGGAGCAGTTAACAGTACATTTCAATGAAATAGTAA
Unaligned ( gi|25 ): AATGCTTGTGAAGATATTATTTGAATTTTGAAAGTTATTGTAACTCTGCCCTCCATATGAAACATA
Unaligned ( gi|27 ): TCATGATTCCAGGGAATCAGAAATGGTAACAACATGAATGCACAATATCCATA
Alignments
lowQualScore : 111 1 7777777777777777777 1 4444444 11 33333333333333333333333333 44444444 11111 1 111 111 111 111
lowQualScore : 6 1 4 0 1 111 777 3 0 2 9 2 2222222222222222222 0 2 1 7 0 0 0 1 3333333 1 3 1 0 666 3 55 0 555 0 0 1 4 4 22 1 1 2 77777777777777777777777777 1 55555555 22 88888 0 0 777 4 3 6 0 777 777 1 55 8 4 777 99 6 22 0
lowQualScore : . . . . . ... ... . . . . . ................... . . . . . . . . ....... . . . . ... . .. . ... . . . . . .. . . . .......................... . ........ .. ..... . . ... . . . . ... ... . .. . . ... .. . .. .
lowQualScore : 0 0 0 7 0 333 555 5 0 5 8 5 0000000000000000000 2 5 0 2 2 8 0 2 8888888 0 1 0 2 444 6 00 5 555 9 7 7 3 3 99 0 8 5 55555555555555555555555555 0 22222222 88 00000 2 0 555 0 5 0 2 555 555 2 00 2 2 555 00 8 00 2
consensus : TGACAGGGCAATGCACTNACTAACACAATTAGCGGCAGGACAA---GGCNCTAACTG-ANAAAATTGGTGACAGGACA-NA-CANTGG---------TGGCAGGACAANGCNCTNACTGACAAAATTGGTGGCAGGACA-ATAACATT-GGTGGCAGGACAAGGCACTAACTGACANAATTGGTGGCAGGACAAGGCACTAACTG-ACAAAANTGGTGACAG---GAC-AAGGCACTAACTGAC--AAAATTGGTG--GCAGGACAAGGCACTAACTGACAAAATTGGTGACAGGACAANGCACTANCTGACAAAATCGGTGGCAGGACAAG----GC----A----CT---------GACAAAATTGGTGGCAGTG--AG-CAAGGCACTAACTGGCAAAATCGG-TGGC---AGGACAAGGCACTAACTGNCAAAANTGGTGACAGGACAAGGCACT---AACT---GACAAAANNGGTGAC---AGGACAAGGCACTAACCGACAAAATTGGTGGCAGGACAAGGCACTAACTGACAC
Reference ( family-5369 ) : TGACAGGACGANGCACTAACTGACANAANTGGTGGCAGGACAA---GGCACTAACTG-ACAAAATTGGTGACAGGACA-CA--ANTGG---------TGGCAGGACAAGGCNCTAACTGACAAAATTGGTGGCAGGACA-ATA----T-GGTGGCAGGACAAGGCACTAACTGACANAATTGGTGGCAGGACAAGGCACTAACTG-ACAAAANTGGTGGCAG---GAC-AAGGCACTAACTGAC--AAAATTGGTG--GCAGGACAAGGCACTAACTGACAAAATTGGTGGCAGGACAAGGCACTAACTGACANAATTGGTGGCAGGACAAG----GC----A----CT---------GACAAAATTGGTGGCAGTG--AG-CAAGGCACTAACTGACAAAATCGG-TGGC---AGGACAAGGCACTAACTGACAAAATTGGTGGCAGGACAAGGCACT---AACT---GACAAAATNGGCGGC---AGGACAAGGCACTAACTGACAAAATTGGTGGCAGGACAAGGCACTAACTGACAC
gi|1 : CAGGACAA---TGCTCTAACAG-ACAAAATTGGTGACAGGACA-AAGCAGTGGCAAAACAGATGGCAAGACAATGCTCTAACAGATAAAATTGGTGACAGGACA-AAA----TCGGTGGTAGGAAAAGGCACTAACTGACAAAAACTGCGACGGGATAAAGCACTGACTG-ACAAAAATGGCGACAG---GGC-AAGACACTTACTGA
gi|11 : ACACAATCTGTGGCAGGACAAATCACAAACTA-ACAAAATCGATGACAG---GAC-GAAGCACTAACTGAC--ATAATTGACG--GCAAGACAAGGCCCTAACTGACAAAATTGGCGACAGGACGAGGCACTTACTAATACAATTGGCCACAGGACAAGCAAAGC----ACTTGCT---------GACAATATAGAAGGCCCTG--GGCCAAGGCACTAACTGattttcagccagatcattattactgatgtcgttataacttattaaatataaaatataaagtgtgcctttttaaagaagatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacacaattaaatttaataatcattaaacgttatttctggaaaaccagatttatttatcaacatgtttataaactgtttgcaattttgagcggatttttacgaaatagtacgtactattatccgctggtccatgggggttaagtatttagcttgacatataataataaatattatttgataacttactcgaaaactttatatgccggaacatgtaaaccacaaggagagttctattatatatttagatagactagtcatttatgtggcatttctggctgatctttaaaaaaacatataattaaaccccaatgtaaactgctgacatcacaaacgaagcgataaaaaatgacaacaaacctgacatttgtttcagttaaatagatgccaatcattacatggatttgtccttgtgtttggaaatgttaggttattgtaactctaccctctatat
gi|12 : TAACTGACACAATTAGTGACAGAATATCACGCTAACTG-ACACAATTTGTGGCAG---AAT-AAGGCGCTAACTGAC--ACAATTTGTG--GCAGAATATGGCGCTAACTGACACAAATAGTGGAAGAActaat
gi|13 : tagaaaagattatactagaaaatttgtatgatataattaaatttagtagaatatactgtaatagagACTAATTAACATAATTGGTTGCAGGACAAGGCACTAACTG-ACACATTTGGTAGCAG---GAC-AATACAATCACTGAG--AAAATCGGT---GCAGGACAATGTACTAACTGACAAAATTGCTGTCAGGACAATACATTAGCTGACTAAATGGATTATGG---AAA----TA----A----CT---------GACAAAATTGGt
gi|17 : ACTGACAAAATCAG-TGAC---AGGACGAGGCACTAACTGACAAAAGCAATGACAGGAAAAGGCACT---AACT---AACAAAAAGGATGAC---AGATAAAGGCACTAAATGACATAATTGGTGGCAGGATAAGGCACTA
gi|19 : TGACAAAATTTGTGGCAGGACAAGACTCTAACTG-ACAGAATTGGTGGCAT---GAC-AAGGCTCTAACTGAC--AGAATTGGTG--GCATGACAAGGCTCTAACTGACAAAATTGGTGGC
gi|2 : ACAAATTGACATCATTGGTGGCAGAACAAGGTACTAGTTG-CCGAAAGT
gi|20 : actaattgCTAACTGACAAAATTGGTGACAGGATGAGGCACTAACTA-ACAAAAGT--TAAAAA---GAA-AATGCTCTTACTGAC--AAAA-TGTTG--ACTGGAAAAGGatactaaatgatgtgttcaacctaatgatcgtttactgatgtcgtcatagtttattcaattttaaagaagatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatacaagtatgtacatattatattatgcactatacgctatttatggaaaatcagatttatcaacatgtgacagttaagatactgttttcctaatttgagtagttaacgatatattttgatgaaatagtaagtattatccgctggtcaatgcggattaaacattagtattttgcgtgagatataaaaataactacatgtgtatttttaataacatgctagaaaactttgagtatcggtactgcttgtaaaacacatatcttatactttatacatagcttgtctatgaaacaaacatgtaacagaaacctccttttaaattaatgacctgtaaaccaatcgatttcaatttaaaaaaatagaagaaaaacaaactcgatatttgtctcatttgaaataatgacagttatttactaagatttgtcttagtgcttgaaaccattatttggattttgaaggttgtagtaactctgccctcaacatgaaacatgcaacacccctcgctgccactattac
gi|21 : ggttagactnnnnnnnnnnACTTACTC-ACAAAAATGTTTACAG---GAC-AAAGCACTAAC--AC----AACCAGTC--CCAGGACAATGTATTGACTGGCAACCGTGATAACTGGA-ACTACATTAACTGACAAA
gi|22 : acaACTGGCACAATTGGTGGCAGGACAA---GGCACTAACTGAAAAAAAATGGTGACAGGAC
gi|22 : ACTGGCACAATTGGTGGCAGGACAAGGCACTAACTGAAAAAAAATGGTGACAG---GACTAAG--ATTAATAGGCTAAGAATAGATG--Gtaagattaataggctaagaatagatggaaaac
gi|26 : TACCTGACACAATTGTTGACAGAACAAGGCACTA----GCATAATAAGTGGCTGGAAAAG----AC----A----aaaac
gi|28 : CAAGTCACGAACGAACACAATTGGTTGCAGGTCATGGCACTACCTG-ACAA
gi|29 : ATTGAC--AAAATTAGTGTGGCAGGACAAGGCACTAATTGACAAAATTGG
gi|3 : TGACAGGGCAATGTACTTATTAACACAAATAATGGCAGGACAA---GGCCCTTACTG-AGAACATTTGTGGCAGGACA-CA--AATGG---------TGGCAGGACAAGGCCCTTACTGAAAACATTTGTGGCAGGACACATA----T-GGTAGCAGGACAAGACACTAATTAACACAACTGGTTGCAGGACAAGGCACTATCTA-ATAAAAATGATAGCAT---GGC-AAAACACTAAATGAC--AAATTTGGCG--GCAGAGTAAGTCACTAACTGACAAAATTGGTGAGAGGACAAGGCACCATCTGACACAGTTGTTGGCAGGACAAG----GC----A----CT---------GGCAAAATTGGTTGCAGTGTAAG-TAAGACACTAACTGGCAAAATAGA-AGGCCCTATGACAAGGAACAAACCGACAAATTTGGTGACAGGACAAGACACT---AACTAGCGGCAAAATAGAAAGCCCTAGGACAAGGCACAAAACGAATAAATCTGTGGCAGAACAAGACAATAACTGACAC
gi|4 : ACTAACCAACAAAACTGGAGACAGGACAATGCACTAACTAACAC
gi|4 : taGACAGGACAATGCACTAACTAACACAATAAGCGACAAGACGACACGGCATTAACTG-ACAAAA---GTGA--------------------------TTGCATGAAAATGCACACACTGACATGACTGGTGGCAGGACA-ACAACATT-ATTGGCAGGACAAGGCACGAGCCATCTAAATTGGTGTCAGGACAAGACACTAATCA-TCACACTAAGTGACAGAGCGAC-AAGGCACTAACTAAC--AAATCTGATC--GTAGGAAAAGGCACTAACTTACAAAATTGGTAGCAGGA------------TAACAAAATTAGTGGCAGGAAAAT----GCAATTA----CT---------GACAACATTGGTGACAG-G--A--CAAGGTACTGACT----AAATCGG-TGGC---AGGACAAAGCACTAACTGTCAAAATTGGTGACCGGACAATGCACTATAAACT---GACAAAAATAGTGTC---AGGACAATACACTAACTGACAAaataagcgacaagacgacacggcattaactgacaaaagtgattgcatgaaaatgcacacactgacatgactggtggcaggacaacaacattattggcaggacaaggcacgagccatctaaattggtgtcaggacaagacactaatcatcacactaagtgacagagcgacaaggcactaactaacaaatctgatcgtaggaaaaggcactaacttacaaaattggtagcaggataacaaaattagtggcaggaaaatgcaattactgacaacattggtgacaggacaaggtactgactaaatcggtggcaggacaaagcactaactgtcaaaattggtgaccggacaatgcactataaactgacaaaaatagtgtcaggacaatacactaactgacaaa
gi|8 : taactaaccaacaaaactggaTGACAGAACAGTATCATTGG---------TGACAGGACAAGGCACTGACTGTCAAAATTGGTGACAGGACA-ATAACATT-TGTGACAGGACAAGGCACTGACTGTCAACATTGTTGGCAGGACAA-----TAAC--------ATTATTGACAA---GAC-AAGGCACTGATTGTC--AAAATTGGCA--GCAGGACAA---------TTACA---TTGTTGACAGAACAATGCACTTTCTGACAAAAGCGGTGGCATGACAAA----GC----A----CTTACTGACAAGACAAAATTGGTGACAG--------AA--CAGTAAC-------ATTGGATGAC---AGGACAAGGCACTAACTGTCAAAAATAGTGACAGGACAAAGCAAT---GACT---GTAAAAATTGGTGAC---AGGACAA-----TAAC-------ATTGGTAACAGGAAAAG
13 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): GGTGATTGTAGTAGTAGTGGTAGAACCCCCTCTTGTAAATTGATAACCTGACAAATCATGCGATTAAAATTCAAAAATAATAAATAAAATCGACCCTTATACTCATTTCAGTTGAATTGATGACAAGCAGTCTAGTACTTGTCCTCGTGCTTGAAATTATTATTTGGATTTTGAAGGAAGTAGTCACTCTATAGTAATTCATATCAAATGTGCCACACTTCTTATATCAGTACCACGATTCCAAGAAAGCAGAAATAATAATAACACTGGAGAGGCACAATTCTGTATTAAATCTGACAACGGACAATCAAAACATAATATGTATCACTTGTTTTCAACGGAACAGTTGTGTAACACTTGACGATTCTGTTATTCCCAGACTGGTTACAACATCCCATTTGATGACATTGAACTTTGAACCGACTAGACAAGATAC
Unaligned ( gi|6 ): ACCCCCTCTTGTAAATTGATAACCTGACAAATAAAGCGATTAAAAATAAAAAAAATAATAAATAAAAGCGACCCTAATACTCATTTCAGTTAAATTGATGACAAGCAGTCAAGGACTTGTTCTCGTGCTTGAAAATATTATTTGGATTTAGAAGGAAGTAGTCACTCTATAGTAATTCATATGAAACGTGCAACACCCCTCATATCAGTTCCGTGATTCCAAGAAAGCCGAAATAATAATAACACTGGAGAGGCAAAATTCTTACTGTCATAAATCTGACAACGGACAATCAAAACATAATATATATCACTTGTTTTTTCGACAGAACGGTTGTGTAACATTTGACGATTCTGTAATTCCCAGACTGGTTACATCCCATTTGATGACATGTAACTTTGAACCGACTAGACAAGATAACTTATTACAAAGACAAAA
Unaligned ( gi|7 ): GTAAATTATGACCTGACAAATAAAGCGATTAAAATTTCAAAAATAATAAATAAAAGCGACCCTAATACTCATTTCATTTAAACTGATGACAAGCAATCTTGGACTTGATCTCGTGCTCGAAAATATTATTTGGATTTAGATGGAAGTAGTCACTCTATAGAAATTCATATTAAACGTGCAACACTCCTCATATAAGTTCCATTATTCCAAGAAAGCAGAAATAAAAATAACACTGGCGAGGCAAAATTCTAACTGTCTTAAATCTGACAACGGACAATCAAAACATAATATGTATCACATGGTTGGGTAACACTTGACGCTTCTGTTATTCCCAGACTGATTACATCCAAGTTGATGAAATGTAACTTTGAACCGACTAGACAAGATAACTTATTGCAAAGACAAAATGT
Unaligned ( gi|9 ): ACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCACCATATACAATAATGTTTAAATTTTAAATTAATTATATACTATCTGTTATTTCTGGAAAACCAGACTTATTTATCAA
Unaligned ( gi|10 ): TAAATTTATTATGCACTATACGTTATTTCTAGTAAACCAGATTAATTTATTTAATCAACATGTGACATATTAAATACTATTACCCATTTTGAGCAGTCAACTATGCATTTTGGTTAAATAGTATGATCTATTATCAGCTGGTCTTTGGCGATTATACAATAGTATTTTGCATGAGATATAATAGCTATTATTTAATAACTTGCCAGAAAACTTTATCAGAATAT
Unaligned ( gi|14 ): CTGGAAAGACAAGTTTTATGACAACTGGCAATCAAAGCATTTTAGATGCGAAGCTTGTGTGCCATATGTCCATTCTGTTATTTCCAGACTGGTTACCTGTCATCAGAGGACATACAACTAGACAAGATATATTG
Unaligned ( gi|15 ): AACGGTCATAAATCTGACAACGGGCAATTAATGACGCAAGGGTCCATTCTGTTTTTTTCAGCCGGGTTACATATCATTTGAGGACATATAACTTTGTACCAGCGTTACAAGATAACTGAATACATAGACAAAA
Unaligned ( gi|16 ): TAATATTTGTTTCAGTTAAATTGATGACTAACATTCCAAGAATTTGTTCTAATGCTTGAAAATTATATTTAGATTTAGAAGGTTGTTGTAACTCTGACGTGCATATAGAACGGGCAACAATTTTGTATATA
Unaligned ( gi|18 ): ATATGATAGACCCTTCTTGTAAATTGCTGACCCCACAAACAAGCGATTAAAATTTAAAAAATAAAAAATAAAAACAAACCTGATACTTATTTCAGTTAAATTGATGACCAAAATT
Unaligned ( gi|23 ): TTCACGATTCCAAAAAATCAGAAATAATAACAACACGAAAGACAAAATTCCAATGGACTTGAATTTGACAACGGACAAAC
Unaligned ( gi|24 ): TATCTACTGCAGCGGTTGAAATACGAAAGACTGTTTCCCGCTGGAGCAGTTAACAGTACATTTCAATGAAATAGTAA
Unaligned ( gi|25 ): AATGCTTGTGAAGATATTATTTGAATTTTGAAAGTTATTGTAACTCTGCCCTCCATATGAAACATA
Unaligned ( gi|27 ): TCATGATTCCAGGGAATCAGAAATGGTAACAACATGAATGCACAATATCCATA
Alignments
lowQualScore : 222 111 7777777777777777777 111 1 1 1111 444444444444444 44444444 11111 1 111 111 111 111
lowQualScore : 1 88 333 1 1 333 2 0 1111111111111111111 0 1 1 1 0 0 999 2 0 0 0 1 3 1 1 555 3 44 1 44 0 3 6 88 0 1 2 4444 777777777777777 1 55555555 22 77777 0 0 777 1 1 0 777 777 1 22 1 777 99 6 22 0
lowQualScore : . .. ... . . ... . . ................... . . . . . . ... . . . . . . . . ... . .. . .. . . . .. . . . .... ............... . ........ .. ..... . . ... . . . ... ... . .. . ... .. . .. .
lowQualScore : 0 00 333 0 0 000 5 2 2222222222222222222 2 0 0 0 2 8 222 5 0 2 2 0 1 4 0 888 3 66 8 66 9 0 6 66 5 0 5 2222 000000000000000 0 22222222 88 88888 2 0 555 0 0 2 555 555 2 00 2 555 00 4 00 2
consensus : TGACAGGGCAATGCACTNACTAACACAANNAGCGGCAGGACGA---GGCNCTAACTGACAAAATT-GTGACAGGACAN-A-CANTGG---------TGGCAGGACAANGCNCTNACTGACAAAATTGGTGGCAGGACAACAACAT-TGGTGGCAGGACAAGGCACTAACTGACACAATTGGTGGCAGGACAAGGCACTAACTG-ACAAAATTGGTGACAG---GAC-AAGGCACTAACTGAC--AAAATTGGTG--GCAGGACAAGGCACTAACTGACAAAATTGGTGACAGGACAATGCACTNNCTGACAAAATTGGTGGCAGGACAAG----GCA-TT-CT---------GACAAAATTGGTGGCAGTG--AG-CAAGGCACTAACTGGCAAAATCGG-TGGC---AGGACAAGGCACTAACTGNCAAAANTGGTGACAGGACAAGGCACTA---ACT---GACAAAANNGGTGAC---AGGACAAGGCACTAACCGACAAAATTGGTGGCAGGACAAGGCACTAACTGACAC
Reference ( family-5369 ) : TGACAGGGCAATGCACTNACTAACACAATTAGCGGCAGGACAA---GGCNCTAACTGANAAAATTGGTGACAGGACAN-A-CANTGG---------TGGCAGGACAANGCNCTNACTGACAAAATTGGTGGCAGGACAATAACAT-TGGTGGCAGGACAAGGCACTAACTGACANAATTGGTGGCAGGACAAGGCACTAACTG-ACAAAANTGGTGACAG---GAC-AAGGCACTAACTGAC--AAAATTGGTG--GCAGGACAAGGCACTAACTGACAAAATTGGTGACAGGACAANGCACTANCTGACAAAATCGGTGGCAGGACAAG----GCA----CT---------GACAAAATTGGTGGCAGTG--AG-CAAGGCACTAACTGGCAAAATCGG-TGGC---AGGACAAGGCACTAACTGNCAAAANTGGTGACAGGACAAGGCACTA---ACT---GACAAAANNGGTGAC---AGGACAAGGCACTAACCGACAAAATTGGTGGCAGGACAAGGCACTAACTGACAC
gi|1 : CAGGACAA---TGCTCTAACAGACAAAATTGGTGACAGGACAA-AGCAGTGGCAAAACAGATGGCAAGACAATGCTCTAACAGATAAAATTGGTGACAGGACAA--A-AT-CGGTGGTAGGAAAAGGCACTAACTGACAAAAACTGCGACGGGATAAAGCACTGACTG-ACAAAAATGGCGACAG---GGC-AAGACACTTACTGA
gi|11 : ACACAATCTGTGGCAGGACAAATCACAAACTA-ACAAAATCGATGACAG---GAC-GAAGCACTAACTGAC--ATAATTGACG--GCAAGACAAGGCCCTAACTGACAAAATTGGCGACAGGACGAGGCACTTACTAATACAATTGGCCACAGGACAAGCAAAGCACTTGCT---------GACAATATAGAAGGCCCTG--GGCCAAGGCACTAACTGattttcagccagatcattattactgatgtcgttataacttattaaatataaaatataaagtgtgcctttttaaagaagatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacacaattaaatttaataatcattaaacgttatttctggaaaaccagatttatttatcaacatgtttataaactgtttgcaattttgagcggatttttacgaaatagtacgtactattatccgctggtccatgggggttaagtatttagcttgacatataataataaatattatttgataacttactcgaaaactttatatgccggaacatgtaaaccacaaggagagttctattatatatttagatagactagtcatttatgtggcatttctggctgatctttaaaaaaacatataattaaaccccaatgtaaactgctgacatcacaaacgaagcgataaaaaatgacaacaaacctgacatttgtttcagttaaatagatgccaatcattacatggatttgtccttgtgtttggaaatgttaggttattgtaactctaccctctatat
gi|12 : TAACTGACACAATTAGTGACAGAATATCACGCTAACTG-ACACAATTTGTGGCAG---AAT-AAGGCGCTAACTGAC--ACAATTTGTG--GCAGAATATGGCGCTAACTGACACAAATAGTGGAAGAActaat
gi|13 : tagaaaagattatactagaaaatttgtatgatataattaaatttagtagaatatactgtaatagagACTAATTAACATAATTGGTTGCAGGACAAGGCACTAACTG-ACACATTTGGTAGCAG---GAC-AATACAATCACTGAG--AAAATCGGT---GCAGGACAATGTACTAACTGACAAAATTGCTGTCAGGACAATACATTAGCTGACTAAATGGATTATGG---AAA----TAA----CT---------GACAAAATTGGt
gi|17 : ACTGACAAAATCAG-TGAC---AGGACGAGGCACTAACTGACAAAAGCAATGACAGGAAAAGGCACTA---ACT---AACAAAAAGGATGAC---AGATAAAGGCACTAAATGACATAATTGGTGGCAGGATAAGGCACTA
gi|19 : TGACAAAATTTGTGGCAGGACAAGACTCTAACTG-ACAGAATTGGTGGCAT---GAC-AAGGCTCTAACTGAC--AGAATTGGTG--GCATGACAAGGCTCTAACTGACAAAATTGGTGGC
gi|2 : ACAAATTGACATCATTGGTGGCAGAACAAGGTACTAGTTG-CCGAAAGT
gi|20 : actaattgGACTN---NNN-NNNNNNCTAACTGAC--AAAATTGGTG--ACAGGATGAGGCACTAACTAACAAAA--GTTAAAAAGAAAATGCTCTTACTGACAAAAT-GTTGACTGGAAAAG----Gatactaaatgatgtgttcaacctaatgatcgtttactgatgtcgtcatagtttattcaattttaaagaagatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatacaagtatgtacatattatattatgcactatacgctatttatggaaaatcagatttatcaacatgtgacagttaagatactgttttcctaatttgagtagttaacgatatattttgatgaaatagtaagtattatccgctggtcaatgcggattaaacattagtattttgcgtgagatataaaaataactacatgtgtatttttaataacatgctagaaaactttgagtatcggtactgcttgtaaaacacatatcttatactttatacatagcttgtctatgaaacaaacatgtaacagaaacctccttttaaattaatgacctgtaaaccaatcgatttcaatttaaaaaaatagaagaaaaacaaactcgatatttgtctcatttgaaataatgacagttatttactaagatttgtcttagtgcttgaaaccattatttggattttgaaggttgtagtaactctgccctcaacatgaaacatgcaacacccctcgctgccactattac
gi|21 : ggttaACTTACTC-ACAAAAATGTTTACAG---GAC-AAAGCACTAAC--AC----AACCAGTC--CCAGGACAATGTATTGACTGGCAACCGTGATAACTGGA-ACTACATTAACTGACAAA
gi|22 : acaACTGGCACAATTGGTGGCAGGACAAGGCACTAACTGAAAAAAAATGGTGACAG---GACTAAG--ATTAATAGGCTAAGAATAGATG--G
gi|26 : TACCTG-ACACAATTGTTGACAG---AAC-AAGGCACTA----GC--ATAATAAGTG--GCTGGAAAAGACAaaaac
gi|28 : CAAGTCACGAACGAACACAATTGGTTGCAGGTCATGGCACTACCTG-ACAA
gi|29 : ATTGAC--AAAATTAGTGTGGCAGGACAAGGCACTAATTGACAAAATTGG
gi|3 : TGACAGGGCAATGTACTTATTAACACAAATAATGGCAGGACAA---GGCCCTTACTGAGAACATTTGTGGCAGGACAC-A--AATGG---------TGGCAGGACAAGGCCCTTACTGAAAACATTTGTGGCAGGACA----CATATGGTAGCAGGACAAGACACTAATTAACACAACTGGTTGCAGGACAAGGCACTATCTA-ATAAAAATGATAGCAT---GGC-AAAACACTAAATGAC--AAATTTGGCG--GCAGAGTAAGTCACTAACTGACAAAATTGGTGAGAGGACAAGGCACCATCTGACACAGTTGTTGGCAGGACAAG----GCA----CT---------GGCAAAATTGGTTGCAGTGTAAG-TAAGACACTAACTGGCAAAATAGA-AGGCCCTATGACAAGGAACAAACCGACAAATTTGGTGACAGGACAAGACACTA---ACTAGCGGCAAAATAGAAAGCCCTAGGACAAGGCACAAAACGAATAAATCTGTGGCAGAACAAGACAATAACTGACAC
gi|4 : ACTAACCAACAAAACTGGAGACAGGACAATGCACTAACTAACAC
gi|4 : taGACAGGACAATGCACTAACTAACACAATAAGCGACAAGACGACACGGCATTAACTGACAAAA---GTGA--------------------------TTGCATGAAAATGCACACACTGACATGACTGGTGGCAGGACAACAACAT-TATTGGCAGGACAAGGCACGAGCCATCTAAATTGGTGTCAGGACAAGACACTAATCA-TCACACTAAGTGACAGAGCGAC-AAGGCACTAACTAAC--AAATCTGATC--GTAGGAAAAGGCACTAACTTACAAAATTGGTAGCAGGATAA------------CAAAATTAGTGGCAGGAAAAT----GCAATTACT---------GACAACATTGGTGACAG-G--A--CAAGGTACTGACT----AAATCGG-TGGC---AGGACAAAGCACTAACTGTCAAAATTGGTGACCGGACAATGCACTATAAACT---GACAAAAATAGTGTC---AGGACAATACACTAACTGACAAaataagcgacaagacgacacggcattaactgacaaaagtgattgcatgaaaatgcacacactgacatgactggtggcaggacaacaacattattggcaggacaaggcacgagccatctaaattggtgtcaggacaagacactaatcatcacactaagtgacagagcgacaaggcactaactaacaaatctgatcgtaggaaaaggcactaacttacaaaattggtagcaggataacaaaattagtggcaggaaaatgcaattactgacaacattggtgacaggacaaggtactgactaaatcggtggcaggacaaagcactaactgtcaaaattggtgaccggacaatgcactataaactgacaaaaatagtgtcaggacaatacactaactgacaaa
gi|8 : taactaaccaacaaaactggaTGACAGAACAGTATCATTGG---------TGACAGGACAAGGCACTGACTGTCAAAATTGGTGACAGGACAATAACAT-TTGTGACAGGACAAGGCACTGACTGTCAACATTGTTGGCAGGACAA-----TAAC--------ATTATTGACAA---GAC-AAGGCACTGATTGTC--AAAATTGGCA--GCAGGACAA---------TTACA---TTGTTGACAGAACAATGCACTTTCTGACAAAAGCGGTGGCATGACAAA----GCA----CTTACTGACAAGACAAAATTGGTGACAG--------AA--CAGTAAC-------ATTGGATGAC---AGGACAAGGCACTAACTGTCAAAAATAGTGACAGGACAAAGCAATG---ACT---GTAAAAATTGGTGAC---AGGACAA-----TAAC-------ATTGGTAACAGGAAAAG
13 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): GGTGATTGTAGTAGTAGTGGTAGAACCCCCTCTTGTAAATTGATAACCTGACAAATCATGCGATTAAAATTCAAAAATAATAAATAAAATCGACCCTTATACTCATTTCAGTTGAATTGATGACAAGCAGTCTAGTACTTGTCCTCGTGCTTGAAATTATTATTTGGATTTTGAAGGAAGTAGTCACTCTATAGTAATTCATATCAAATGTGCCACACTTCTTATATCAGTACCACGATTCCAAGAAAGCAGAAATAATAATAACACTGGAGAGGCACAATTCTGTATTAAATCTGACAACGGACAATCAAAACATAATATGTATCACTTGTTTTCAACGGAACAGTTGTGTAACACTTGACGATTCTGTTATTCCCAGACTGGTTACAACATCCCATTTGATGACATTGAACTTTGAACCGACTAGACAAGATAC
Unaligned ( gi|6 ): ACCCCCTCTTGTAAATTGATAACCTGACAAATAAAGCGATTAAAAATAAAAAAAATAATAAATAAAAGCGACCCTAATACTCATTTCAGTTAAATTGATGACAAGCAGTCAAGGACTTGTTCTCGTGCTTGAAAATATTATTTGGATTTAGAAGGAAGTAGTCACTCTATAGTAATTCATATGAAACGTGCAACACCCCTCATATCAGTTCCGTGATTCCAAGAAAGCCGAAATAATAATAACACTGGAGAGGCAAAATTCTTACTGTCATAAATCTGACAACGGACAATCAAAACATAATATATATCACTTGTTTTTTCGACAGAACGGTTGTGTAACATTTGACGATTCTGTAATTCCCAGACTGGTTACATCCCATTTGATGACATGTAACTTTGAACCGACTAGACAAGATAACTTATTACAAAGACAAAA
Unaligned ( gi|7 ): GTAAATTATGACCTGACAAATAAAGCGATTAAAATTTCAAAAATAATAAATAAAAGCGACCCTAATACTCATTTCATTTAAACTGATGACAAGCAATCTTGGACTTGATCTCGTGCTCGAAAATATTATTTGGATTTAGATGGAAGTAGTCACTCTATAGAAATTCATATTAAACGTGCAACACTCCTCATATAAGTTCCATTATTCCAAGAAAGCAGAAATAAAAATAACACTGGCGAGGCAAAATTCTAACTGTCTTAAATCTGACAACGGACAATCAAAACATAATATGTATCACATGGTTGGGTAACACTTGACGCTTCTGTTATTCCCAGACTGATTACATCCAAGTTGATGAAATGTAACTTTGAACCGACTAGACAAGATAACTTATTGCAAAGACAAAATGT
Unaligned ( gi|9 ): ACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCACCATATACAATAATGTTTAAATTTTAAATTAATTATATACTATCTGTTATTTCTGGAAAACCAGACTTATTTATCAA
Unaligned ( gi|10 ): TAAATTTATTATGCACTATACGTTATTTCTAGTAAACCAGATTAATTTATTTAATCAACATGTGACATATTAAATACTATTACCCATTTTGAGCAGTCAACTATGCATTTTGGTTAAATAGTATGATCTATTATCAGCTGGTCTTTGGCGATTATACAATAGTATTTTGCATGAGATATAATAGCTATTATTTAATAACTTGCCAGAAAACTTTATCAGAATAT
Unaligned ( gi|14 ): CTGGAAAGACAAGTTTTATGACAACTGGCAATCAAAGCATTTTAGATGCGAAGCTTGTGTGCCATATGTCCATTCTGTTATTTCCAGACTGGTTACCTGTCATCAGAGGACATACAACTAGACAAGATATATTG
Unaligned ( gi|15 ): AACGGTCATAAATCTGACAACGGGCAATTAATGACGCAAGGGTCCATTCTGTTTTTTTCAGCCGGGTTACATATCATTTGAGGACATATAACTTTGTACCAGCGTTACAAGATAACTGAATACATAGACAAAA
Unaligned ( gi|16 ): TAATATTTGTTTCAGTTAAATTGATGACTAACATTCCAAGAATTTGTTCTAATGCTTGAAAATTATATTTAGATTTAGAAGGTTGTTGTAACTCTGACGTGCATATAGAACGGGCAACAATTTTGTATATA
Unaligned ( gi|18 ): ATATGATAGACCCTTCTTGTAAATTGCTGACCCCACAAACAAGCGATTAAAATTTAAAAAATAAAAAATAAAAACAAACCTGATACTTATTTCAGTTAAATTGATGACCAAAATT
Unaligned ( gi|23 ): TTCACGATTCCAAAAAATCAGAAATAATAACAACACGAAAGACAAAATTCCAATGGACTTGAATTTGACAACGGACAAAC
Unaligned ( gi|24 ): TATCTACTGCAGCGGTTGAAATACGAAAGACTGTTTCCCGCTGGAGCAGTTAACAGTACATTTCAATGAAATAGTAA
Unaligned ( gi|25 ): AATGCTTGTGAAGATATTATTTGAATTTTGAAAGTTATTGTAACTCTGCCCTCCATATGAAACATA
Unaligned ( gi|27 ): TCATGATTCCAGGGAATCAGAAATGGTAACAACATGAATGCACAATATCCATA
Alignments
lowQualScore : 222 111 1 7777777777777777777 111 1 1111 55555555555555555555 44444444 11111 1 111 111 111 111
lowQualScore : 1 22 0 333 1 999 0 2 0 1111111111111111111 0 1 1 1 0 0 999 2 0 0 0 2 3 1 0 555 3 44 1 44 0 3 4 66 44 4444 2 1 55555555555555555555 1 55555555 22 77777 0 0 777 1 1 0 777 777 1 22 1 777 99 6 22 0
lowQualScore : . .. . ... . ... . . . ................... . . . . . . ... . . . . . . . . ... . .. . .. . . . .. .. .... . . .................... . ........ .. ..... . . ... . . . ... ... . .. . ... .. . .. .
lowQualScore : 0 00 7 333 0 777 0 5 2 2222222222222222222 2 0 0 0 2 8 000 5 0 2 2 0 1 4 5 888 3 66 8 66 9 0 9 00 88 2222 5 0 55555555555555555555 0 22222222 88 88888 2 0 555 0 0 2 555 555 2 00 2 555 00 4 00 2
consensus : TGACAGGGCAATGCACTNACTAACACAANNAGCGGCAGGACGA---GGCNCTAACTGACAAAATT-G-TGACAGGACAN-A-CANTGG---------TGGCAGGACAANGCNCTNACTGACAAAATTGGTGGCAGGACAACAACAT-TGGTGGCAGGACAAGGCACTAACTGACACAATTGGTGGCAGGACAAGGCACTAACTG-ACAAAATTGGTGACAG---GAC-AAGGCACTAACTGAC--AAAATTGGTG--GCAGGACAAGGCACTAACTGACAAAATTGGTGACAGGACAATGCACTNNCTGACAAAATTGG----TGGCAGGACAAG----GCA-CTT-CT-----GACAAAATTGGTGGCAGTG--AG-CAAGGCACTAACTGGCAAAATCGG-TGGC---AGGACAAGGCACTAACTGNCAAAANTGGTGACAGGACAAGGCACT---AACT---GACAAAANNGGTGAC---AGGACAAGGCACTAACCGACAAAATTGGTGGCAGGACAAGGCACTAACTGACAC
Reference ( family-5369 ) : TGACAGGGCAATGCACTNACTAACACAANNAGCGGCAGGACGA---GGCNCTAACTGACAAAATT-G-TGACAGGACAN-A-CANTGG---------TGGCAGGACAANGCNCTNACTGACAAAATTGGTGGCAGGACAACAACAT-TGGTGGCAGGACAAGGCACTAACTGACACAATTGGTGGCAGGACAAGGCACTAACTG-ACAAAATTGGTGACAG---GAC-AAGGCACTAACTGAC--AAAATTGGTG--GCAGGACAAGGCACTAACTGACAAAATTGGTGACAGGACAATGCACTNNCTGACAAAATTGG----TGGCAGGACAAG----GCA-TT--CT-----GACAAAATTGGTGGCAGTG--AG-CAAGGCACTAACTGGCAAAATCGG-TGGC---AGGACAAGGCACTAACTGNCAAAANTGGTGACAGGACAAGGCACT---AACT---GACAAAANNGGTGAC---AGGACAAGGCACTAACCGACAAAATTGGTGGCAGGACAAGGCACTAACTGACAC
gi|1 : CAGGACAA---TGCTCTAACAGACAAAATT-GGTGACAGGACAA-AGCAGTGGCAAAACAGATGGCAAGACAATGCTCTAACAGATAAAATTGGTGACAGGACAA--A-AT-CGGTGGTAGGAAAAGGCACTAACTGACAAAAACTGCGACGGGATAAAGCACTGACTG-ACAAAAATGGCGACAG---GGC-AAGACACTTACTGA
gi|11 : ACACAATCTGTGGCAGGACAAATCACAAACTA-ACAAAATCGATGACAG---GAC-GAAGCACTAACTGAC--ATAATTGACG--GCAAGACAAGGCCCTAACTGACAAAATTGGCGACAGGACGAGGCACTTACTAATACAATTGG----CCACAGGACAAGCAAAGCA-CTTGCT-----GACAATATAGAAGGCCCTG--GGCCAAGGCACTAACTGattttcagccagatcattattactgatgtcgttataacttattaaatataaaatataaagtgtgcctttttaaagaagatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacacaattaaatttaataatcattaaacgttatttctggaaaaccagatttatttatcaacatgtttataaactgtttgcaattttgagcggatttttacgaaatagtacgtactattatccgctggtccatgggggttaagtatttagcttgacatataataataaatattatttgataacttactcgaaaactttatatgccggaacatgtaaaccacaaggagagttctattatatatttagatagactagtcatttatgtggcatttctggctgatctttaaaaaaacatataattaaaccccaatgtaaactgctgacatcacaaacgaagcgataaaaaatgacaacaaacctgacatttgtttcagttaaatagatgccaatcattacatggatttgtccttgtgtttggaaatgttaggttattgtaactctaccctctatat
gi|12 : TAACTGACACAATTAGTGACAGAATATCACGCTAACTG-ACACAATTTGTGGCAG---AAT-AAGGCGCTAACTGAC--ACAATTTGTG--GCAGAATATGGCGCTAACTGACACAAATAGTGGAAGAActaat
gi|13 : tagaaaagattatactagaaaatttgtatgatataattaaatttagtagaatatactgtaatagagACTAATTAACATAATTGGTTGCAGGACAAGGCACTAACTG-ACACATTTGGTAGCAG---GAC-AATACAATCACTGAG--AAAATCGGTG---CAGGACAATGTACTAACTGACAAAATTGCTGTCAGGACAATACATTAGCTGACTAAAT-GGATTATGGAA--ATAA-------------CT-----GACAAAATTGGt
gi|17 : ACTGACAAAATCAG-TGAC---AGGACGAGGCACTAACTGACAAAAGCAATGACAGGAAAAGGCACT---AACT---AACAAAAAGGATGAC---AGATAAAGGCACTAAATGACATAATTGGTGGCAGGATAAGGCACTA
gi|19 : TGACAAAATTTGTGGCAGGACAAGACTCTAACTG-ACAGAATTGGTGGCAT---GAC-AAGGCTCTAACTGAC--AGAATTGGTG--GCATGACAAGGCTCTAACTGACAAAATTGGTGGC
gi|2 : ACAAATTGACATCATTGGTGGCAGAACAAGGTACTAGTTG-CCGAAA
gi|20 : actaattgGACTN---NNN-NNNNNNCTAACTGAC--AAAATTGGTG--ACAGGATGAGGCACTAACTAACAAAA--GTTAAAAAGAAAATGCTCTTACTGACAAAA-TGT----TGACTGGAAAAG----Ggtatactaaatgatgtgttcaacctaatgatcgtttactgatgtcgtcatagtttattcaattttaaagaagatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatacaagtatgtacatattatattatgcactatacgctatttatggaaaatcagatttatcaacatgtgacagttaagatactgttttcctaatttgagtagttaacgatatattttgatgaaatagtaagtattatccgctggtcaatgcggattaaacattagtattttgcgtgagatataaaaataactacatgtgtatttttaataacatgctagaaaactttgagtatcggtactgcttgtaaaacacatatcttatactttatacatagcttgtctatgaaacaaacatgtaacagaaacctccttttaaattaatgacctgtaaaccaatcgatttcaatttaaaaaaatagaagaaaaacaaactcgatatttgtctcatttgaaataatgacagttatttactaagatttgtcttagtgcttgaaaccattatttggattttgaaggttgtagtaactctgccctcaacatgaaacatgcaacacccctcgctgccactattac
gi|21 : ggttaACTTACTC-ACAAAAATGTTTACAG---GAC-AAAGCACTAAC--AC----AACCAGTC--CCAGGACAATGTATTGACTGGCAACCGTGATAACTGGA-ACTACATTAACTGACAAA
gi|22 : acaACTGGCACAATTGGTGGCAGGACAAGGCACTAACTGAAAAAAAATGGTGACAG---GACTAAG--ATTAATAGGCTAAGAATAGATG--G
gi|26 : TACCTG-ACACAATTGTTGACAG---AAC-AAGGCACTA----GC--ATAATAAGTG--GCTGGAAAAGACAaaaac
gi|28 : CAAGTCACGAACGAACACAATTGGTTGCAGGTCATGGCACTACCTG-ACAA
gi|29 : ATTGAC--AAAATTAGTGTGGCAGGACAAGGCACTAATTGACAAAATTGG
gi|3 : TGACAGGGCAATGTACTTATTAACACAAATAATGGCAGGACAA---GGCCCTTACTGAGAACATTTG-TGGCAGGACAC-A--AATGG---------TGGCAGGACAAGGCCCTTACTGAAAACATTTGTGGCAGGACA----CATATGGTAGCAGGACAAGACACTAATTAACACAACTGGTTGCAGGACAAGGCACTATCTA-ATAAAAATGATAGCAT---GGC-AAAACACTAAATGAC--AAATTTGGCG--GCAGAGTAAGTCACTAACTGACAAAATTGGTGAGAGGACAAGGCACCATCTGACACAGTTGT----TGGCAGGACAAG----GCA-----CT-----GGCAAAATTGGTTGCAGTGTAAG-TAAGACACTAACTGGCAAAATAGA-AGGCCCTATGACAAGGAACAAACCGACAAATTTGGTGACAGGACAAGACACT---AACTAGCGGCAAAATAGAAAGCCCTAGGACAAGGCACAAAACGAATAAATCTGTGGCAGAACAAGACAATAACTGACAC
gi|4 : ACTAACCAACAAAACTGGAGACAGGACAATGCACTAACTAACAC
gi|4 : taGACAGGACAATGCACTAACTAACACAATAAGCGACAAGACGACACGGCATTAACTGACAAAA---G-TGA--------------------------TTGCATGAAAATGCACACACTGACATGACTGGTGGCAGGACAACAACAT-TATTGGCAGGACAAGGCACGAGCCATCTAAATTGGTGTCAGGACAAGACACTAATCA-TCACACTAAGTGACAGAGCGAC-AAGGCACTAACTAAC--AAATCTGATC--GTAGGAAAAGGCACTAACTTACAAAATTGGTAGCAGGATAA------------CAAAATTAG----TGGCAGGAAAAT----GCAATTA-CT-----GACAACATTGGTGACAG-G--A--CAAGGTACTGACT----AAATCGG-TGGC---AGGACAAAGCACTAACTGTCAAAATTGGTGACCGGACAATGCACTATAAACT---GACAAAAATAGTGTC---AGGACAATACACTAACTGACAAaataagcgacaagacgacacggcattaactgacaaaagtgattgcatgaaaatgcacacactgacatgactggtggcaggacaacaacattattggcaggacaaggcacgagccatctaaattggtgtcaggacaagacactaatcatcacactaagtgacagagcgacaaggcactaactaacaaatctgatcgtaggaaaaggcactaacttacaaaattggtagcaggataacaaaattagtggcaggaaaatgcaattactgacaacattggtgacaggacaaggtactgactaaatcggtggcaggacaaagcactaactgtcaaaattggtgaccggacaatgcactataaactgacaaaaatagtgtcaggacaatacactaactgacaaa
gi|8 : taactaaccaacaaaactgga-TGACAGAACAGTATCATTGG---------TGACAGGACAAGGCACTGACTGTCAAAATTGGTGACAGGACAATAACAT-TTGTGACAGGACAAGGCACTGACTGTCAACATTGTTGGCAGGACAA-----TAAC--------ATTATTGACAA---GAC-AAGGCACTGATTGTC--AAAATTGGCA--GCAGGACAA---------TTAC---ATTGTTGACAGAACAATGCACTTTCTGACAAAAGCGG----TGGCATGACAAA----GCA-CTTACTGACAAGACAAAATTGGTGACAG--------AA--CAGTAAC-------ATTGGATGAC---AGGACAAGGCACTAACTGTCAAAAATAGTGACAGGACAAAGCAAT---GACT---GTAAAAATTGGTGAC---AGGACAA-----TAAC-------ATTGGTAACAGGAAAAG
13 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): GGTGATTGTAGTAGTAGTGGTAGAACCCCCTCTTGTAAATTGATAACCTGACAAATCATGCGATTAAAATTCAAAAATAATAAATAAAATCGACCCTTATACTCATTTCAGTTGAATTGATGACAAGCAGTCTAGTACTTGTCCTCGTGCTTGAAATTATTATTTGGATTTTGAAGGAAGTAGTCACTCTATAGTAATTCATATCAAATGTGCCACACTTCTTATATCAGTACCACGATTCCAAGAAAGCAGAAATAATAATAACACTGGAGAGGCACAATTCTGTATTAAATCTGACAACGGACAATCAAAACATAATATGTATCACTTGTTTTCAACGGAACAGTTGTGTAACACTTGACGATTCTGTTATTCCCAGACTGGTTACAACATCCCATTTGATGACATTGAACTTTGAACCGACTAGACAAGATAC
Unaligned ( gi|6 ): ACCCCCTCTTGTAAATTGATAACCTGACAAATAAAGCGATTAAAAATAAAAAAAATAATAAATAAAAGCGACCCTAATACTCATTTCAGTTAAATTGATGACAAGCAGTCAAGGACTTGTTCTCGTGCTTGAAAATATTATTTGGATTTAGAAGGAAGTAGTCACTCTATAGTAATTCATATGAAACGTGCAACACCCCTCATATCAGTTCCGTGATTCCAAGAAAGCCGAAATAATAATAACACTGGAGAGGCAAAATTCTTACTGTCATAAATCTGACAACGGACAATCAAAACATAATATATATCACTTGTTTTTTCGACAGAACGGTTGTGTAACATTTGACGATTCTGTAATTCCCAGACTGGTTACATCCCATTTGATGACATGTAACTTTGAACCGACTAGACAAGATAACTTATTACAAAGACAAAA
Unaligned ( gi|7 ): GTAAATTATGACCTGACAAATAAAGCGATTAAAATTTCAAAAATAATAAATAAAAGCGACCCTAATACTCATTTCATTTAAACTGATGACAAGCAATCTTGGACTTGATCTCGTGCTCGAAAATATTATTTGGATTTAGATGGAAGTAGTCACTCTATAGAAATTCATATTAAACGTGCAACACTCCTCATATAAGTTCCATTATTCCAAGAAAGCAGAAATAAAAATAACACTGGCGAGGCAAAATTCTAACTGTCTTAAATCTGACAACGGACAATCAAAACATAATATGTATCACATGGTTGGGTAACACTTGACGCTTCTGTTATTCCCAGACTGATTACATCCAAGTTGATGAAATGTAACTTTGAACCGACTAGACAAGATAACTTATTGCAAAGACAAAATGT
Unaligned ( gi|9 ): ACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCACCATATACAATAATGTTTAAATTTTAAATTAATTATATACTATCTGTTATTTCTGGAAAACCAGACTTATTTATCAA
Unaligned ( gi|10 ): TAAATTTATTATGCACTATACGTTATTTCTAGTAAACCAGATTAATTTATTTAATCAACATGTGACATATTAAATACTATTACCCATTTTGAGCAGTCAACTATGCATTTTGGTTAAATAGTATGATCTATTATCAGCTGGTCTTTGGCGATTATACAATAGTATTTTGCATGAGATATAATAGCTATTATTTAATAACTTGCCAGAAAACTTTATCAGAATAT
Unaligned ( gi|14 ): CTGGAAAGACAAGTTTTATGACAACTGGCAATCAAAGCATTTTAGATGCGAAGCTTGTGTGCCATATGTCCATTCTGTTATTTCCAGACTGGTTACCTGTCATCAGAGGACATACAACTAGACAAGATATATTG
Unaligned ( gi|15 ): AACGGTCATAAATCTGACAACGGGCAATTAATGACGCAAGGGTCCATTCTGTTTTTTTCAGCCGGGTTACATATCATTTGAGGACATATAACTTTGTACCAGCGTTACAAGATAACTGAATACATAGACAAAA
Unaligned ( gi|16 ): TAATATTTGTTTCAGTTAAATTGATGACTAACATTCCAAGAATTTGTTCTAATGCTTGAAAATTATATTTAGATTTAGAAGGTTGTTGTAACTCTGACGTGCATATAGAACGGGCAACAATTTTGTATATA
Unaligned ( gi|18 ): ATATGATAGACCCTTCTTGTAAATTGCTGACCCCACAAACAAGCGATTAAAATTTAAAAAATAAAAAATAAAAACAAACCTGATACTTATTTCAGTTAAATTGATGACCAAAATT
Unaligned ( gi|23 ): TTCACGATTCCAAAAAATCAGAAATAATAACAACACGAAAGACAAAATTCCAATGGACTTGAATTTGACAACGGACAAAC
Unaligned ( gi|24 ): TATCTACTGCAGCGGTTGAAATACGAAAGACTGTTTCCCGCTGGAGCAGTTAACAGTACATTTCAATGAAATAGTAA
Unaligned ( gi|25 ): AATGCTTGTGAAGATATTATTTGAATTTTGAAAGTTATTGTAACTCTGCCCTCCATATGAAACATA
Unaligned ( gi|27 ): TCATGATTCCAGGGAATCAGAAATGGTAACAACATGAATGCACAATATCCATA
Alignments
lowQualScore : 222 111 1 7777777777777777777 111 1 1 1111 4444444444444444444 44444444 11111 1 111 111 111 111
lowQualScore : 1 22 0 333 1 999 0 2 0 1111111111111111111 0 1 1 1 0 0 999 2 0 0 0 2 3 1 0 555 3 44 1 44 0 7 1 66 1 4444 2 1 0000000000000000000 1 55555555 22 77777 0 0 777 1 1 0 777 777 1 22 1 777 99 6 22 0
lowQualScore : . .. . ... . ... . . . ................... . . . . . . ... . . . . . . . . ... . .. . .. . . . .. . .... . . ................... . ........ .. ..... . . ... . . . ... ... . .. . ... .. . .. .
lowQualScore : 0 00 7 333 0 777 0 5 2 2222222222222222222 2 0 0 0 2 8 000 5 0 2 2 0 1 4 5 888 3 66 8 66 9 9 3 00 3 2222 5 0 5555555555555555555 0 22222222 88 88888 2 0 555 0 0 2 555 555 2 00 2 555 00 4 00 2
consensus : TGACAGGGCAATGCACTNACTAACACAANNAGCGGCAGGACGA---GGCNCTAACTGACAAAATT-G-TGACAGGACAN-A-CANTGG---------TGGCAGGACAANGCNCTNACTGACAAAATTGGTGGCAGGACAACAACAT-TGGTGGCAGGACAAGGCACTAACTGACACAATTGGTGGCAGGACAAGGCACTAACTG-ACAAAATTGGTGACAG---GAC-AAGGCACTAACTGAC--AAAATTGGTG--GCAGGACAAGGCACTAACTGACAAAATTGGTGACAGGACAATGCACTNNCTGACAAAATTGG----TGGCAGGACAAG----GCACTTACT-----GACAAAATTGGTGGCAGTG--AG-CAAGGCACTAACTGGCAAAATCGG-TGGC---AGGACAAGGCACTAACTGNCAAAANTGGTGACAGGACAAGGCACT---AACT---GACAAAANNGGTGAC---AGGACAAGGCACTAACCGACAAAATTGGTGGCAGGACAAGGCACTAACTGACAC
Reference ( family-5369 ) : TGACAGGGCAATGCACTNACTAACACAANNAGCGGCAGGACGA---GGCNCTAACTGACAAAATT-G-TGACAGGACAN-A-CANTGG---------TGGCAGGACAANGCNCTNACTGACAAAATTGGTGGCAGGACAACAACAT-TGGTGGCAGGACAAGGCACTAACTGACACAATTGGTGGCAGGACAAGGCACTAACTG-ACAAAATTGGTGACAG---GAC-AAGGCACTAACTGAC--AAAATTGGTG--GCAGGACAAGGCACTAACTGACAAAATTGGTGACAGGACAATGCACTNNCTGACAAAATTGG----TGGCAGGACAAG----GCACTT-CT-----GACAAAATTGGTGGCAGTG--AG-CAAGGCACTAACTGGCAAAATCGG-TGGC---AGGACAAGGCACTAACTGNCAAAANTGGTGACAGGACAAGGCACT---AACT---GACAAAANNGGTGAC---AGGACAAGGCACTAACCGACAAAATTGGTGGCAGGACAAGGCACTAACTGACAC
gi|1 : CAGGACAA---TGCTCTAACAGACAAAATT-GGTGACAGGACAA-AGCAGTGGCAAAACAGATGGCAAGACAATGCTCTAACAGATAAAATTGGTGACAGGACAA--A-AT-CGGTGGTAGGAAAAGGCACTAACTGACAAAAACTGCGACGGGATAAAGCACTGACTG-ACAAAAATGGCGACAG---GGC-AAGACACTTACTGA
gi|11 : ACACAATCTGTGGCAGGACAAATCACAAACTA-ACAAAATCGATGACAG---GAC-GAAGCACTAACTGAC--ATAATTGACG--GCAAGACAAGGCCCTAACTGACAAAATTGGCGACAGGACGAGGCACTTACTAATACAATTGG----CCACAGGACAAGCAAAGCACTTGCT-----GACAATATAGAAGGCCCTG--GGCCAAGGCACTAACTGattttcagccagatcattattactgatgtcgttataacttattaaatataaaatataaagtgtgcctttttaaagaagatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacacaattaaatttaataatcattaaacgttatttctggaaaaccagatttatttatcaacatgtttataaactgtttgcaattttgagcggatttttacgaaatagtacgtactattatccgctggtccatgggggttaagtatttagcttgacatataataataaatattatttgataacttactcgaaaactttatatgccggaacatgtaaaccacaaggagagttctattatatatttagatagactagtcatttatgtggcatttctggctgatctttaaaaaaacatataattaaaccccaatgtaaactgctgacatcacaaacgaagcgataaaaaatgacaacaaacctgacatttgtttcagttaaatagatgccaatcattacatggatttgtccttgtgtttggaaatgttaggttattgtaactctaccctctatat
gi|12 : TAACTGACACAATTAGTGACAGAATATCACGCTAACTG-ACACAATTTGTGGCAG---AAT-AAGGCGCTAACTGAC--ACAATTTGTG--GCAGAATATGGCGCTAACTGACACAAATAGTGGAAGAActaat
gi|13 : tagaaaagattatactagaaaatttgtatgatataattaaatttagtagaatatactgtaatagagACTAATTAACATAATTGGTTGCAGGACAAGGCACTAACTG-ACACATTTGGTAGCAG---GAC-AATACAATCACTGAG--AAAATCGGT---GCAGGACAATGTACTAACTGACAAAATTGCTGTCAGGACAATACATTAGCTGACTAAA-TGGATTATGGAA--ATAA------------CT-----GACAAAATTGGt
gi|17 : ACTGACAAAATCAG-TGAC---AGGACGAGGCACTAACTGACAAAAGCAATGACAGGAAAAGGCACT---AACT---AACAAAAAGGATGAC---AGATAAAGGCACTAAATGACATAATTGGTGGCAGGATAAGGCACTA
gi|19 : TGACAAAATTTGTGGCAGGACAAGACTCTAACTG-ACAGAATTGGTGGCAT---GAC-AAGGCTCTAACTGAC--AGAATTGGTG--GCATGACAAGGCTCTAACTGACAAAATTGGTGGC
gi|2 : ACAAATTGACATCATTGGTGGCAGAACAAGGTACTAGTTG-CCGAAA
gi|20 : actaattgGACTN---NNN-NNNNNNCTAACTGAC--AAAATTGGTG--ACAGGATGAGGCACTAACTAACAAAA--GTTAAAAAGAAAATGCTCTTACTGACAAAA-TGT----TGACTGGAAAAG----Ggtatactaaatgatgtgttcaacctaatgatcgtttactgatgtcgtcatagtttattcaattttaaagaagatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatacaagtatgtacatattatattatgcactatacgctatttatggaaaatcagatttatcaacatgtgacagttaagatactgttttcctaatttgagtagttaacgatatattttgatgaaatagtaagtattatccgctggtcaatgcggattaaacattagtattttgcgtgagatataaaaataactacatgtgtatttttaataacatgctagaaaactttgagtatcggtactgcttgtaaaacacatatcttatactttatacatagcttgtctatgaaacaaacatgtaacagaaacctccttttaaattaatgacctgtaaaccaatcgatttcaatttaaaaaaatagaagaaaaacaaactcgatatttgtctcatttgaaataatgacagttatttactaagatttgtcttagtgcttgaaaccattatttggattttgaaggttgtagtaactctgccctcaacatgaaacatgcaacacccctcgctgccactattac
gi|21 : ggttaACTTACTC-ACAAAAATGTTTACAG---GAC-AAAGCACTAAC--AC----AACCAGTC--CCAGGACAATGTATTGACTGGCAACCGTGATAACTGGA-ACTACATTAACTGACAAA
gi|22 : acaACTGGCACAATTGGTGGCAGGACAAGGCACTAACTGAAAAAAAATGGTGACAG---GACTAAG--ATTAATAGGCTAAGAATAGATG--G
gi|26 : TACCTG-ACACAATTGTTGACAG---AAC-AAGGCACTA----GC--ATAATAAGTG--GCTGGAAAAGACAaaaac
gi|28 : CAAGTCACGAACGAACACAATTGGTTGCAGGTCATGGCACTACCTG-ACAA
gi|29 : ATTGAC--AAAATTAGTGTGGCAGGACAAGGCACTAATTGACAAAATTGG
gi|3 : TGACAGGGCAATGTACTTATTAACACAAATAATGGCAGGACAA---GGCCCTTACTGAGAACATTTG-TGGCAGGACAC-A--AATGG---------TGGCAGGACAAGGCCCTTACTGAAAACATTTGTGGCAGGACA----CATATGGTAGCAGGACAAGACACTAATTAACACAACTGGTTGCAGGACAAGGCACTATCTA-ATAAAAATGATAGCAT---GGC-AAAACACTAAATGAC--AAATTTGGCG--GCAGAGTAAGTCACTAACTGACAAAATTGGTGAGAGGACAAGGCACCATCTGACACAGTTGT----TGGCAGGACAAG----GCA----CT-----GGCAAAATTGGTTGCAGTGTAAG-TAAGACACTAACTGGCAAAATAGA-AGGCCCTATGACAAGGAACAAACCGACAAATTTGGTGACAGGACAAGACACT---AACTAGCGGCAAAATAGAAAGCCCTAGGACAAGGCACAAAACGAATAAATCTGTGGCAGAACAAGACAATAACTGACAC
gi|4 : ACTAACCAACAAAACTGGAGACAGGACAATGCACTAACTAACAC
gi|4 : taGACAGGACAATGCACTAACTAACACAATAAGCGACAAGACGACACGGCATTAACTGACAAAA---G-TGA--------------------------TTGCATGAAAATGCACACACTGACATGACTGGTGGCAGGACAACAACAT-TATTGGCAGGACAAGGCACGAGCCATCTAAATTGGTGTCAGGACAAGACACTAATCA-TCACACTAAGTGACAGAGCGAC-AAGGCACTAACTAAC--AAATCTGATC--GTAGGAAAAGGCACTAACTTACAAAATTGGTAGCAGGA------------TAACAAAATTAG----TGGCAGGAAAAT----GCAATTACT-----GACAACATTGGTGACAG-G--A--CAAGGTACTGACT----AAATCGG-TGGC---AGGACAAAGCACTAACTGTCAAAATTGGTGACCGGACAATGCACTATAAACT---GACAAAAATAGTGTC---AGGACAATACACTAACTGACAAaataagcgacaagacgacacggcattaactgacaaaagtgattgcatgaaaatgcacacactgacatgactggtggcaggacaacaacattattggcaggacaaggcacgagccatctaaattggtgtcaggacaagacactaatcatcacactaagtgacagagcgacaaggcactaactaacaaatctgatcgtaggaaaaggcactaacttacaaaattggtagcaggataacaaaattagtggcaggaaaatgcaattactgacaacattggtgacaggacaaggtactgactaaatcggtggcaggacaaagcactaactgtcaaaattggtgaccggacaatgcactataaactgacaaaaatagtgtcaggacaatacactaactgacaaa
gi|8 : taactaaccaacaaaactgga-TGACAGAACAGTATCATTGG---------TGACAGGACAAGGCACTGACTGTCAAAATTGGTGACAGGACAATAACAT-TTGTGACAGGACAAGGCACTGACTGTCAACATTGTTGGCAGGACAA-----TAAC--------ATTATTGACAA---GAC-AAGGCACTGATTGTC--AAAATTGGCA--GCAGGACAA---------TTAC---ATTGTTGACAGAACAATGCACTTTCTGACAAAAGCGG----TGGCATGACAAA----GCACTTACTGACAAGACAAAATTGGTGACAG--------AA--CAGTAAC-------ATTGGATGAC---AGGACAAGGCACTAACTGTCAAAAATAGTGACAGGACAAAGCAAT---GACT---GTAAAAATTGGTGAC---AGGACAA-----TAAC-------ATTGGTAACAGGAAAAG
13 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): GGTGATTGTAGTAGTAGTGGTAGAACCCCCTCTTGTAAATTGATAACCTGACAAATCATGCGATTAAAATTCAAAAATAATAAATAAAATCGACCCTTATACTCATTTCAGTTGAATTGATGACAAGCAGTCTAGTACTTGTCCTCGTGCTTGAAATTATTATTTGGATTTTGAAGGAAGTAGTCACTCTATAGTAATTCATATCAAATGTGCCACACTTCTTATATCAGTACCACGATTCCAAGAAAGCAGAAATAATAATAACACTGGAGAGGCACAATTCTGTATTAAATCTGACAACGGACAATCAAAACATAATATGTATCACTTGTTTTCAACGGAACAGTTGTGTAACACTTGACGATTCTGTTATTCCCAGACTGGTTACAACATCCCATTTGATGACATTGAACTTTGAACCGACTAGACAAGATAC
Unaligned ( gi|6 ): ACCCCCTCTTGTAAATTGATAACCTGACAAATAAAGCGATTAAAAATAAAAAAAATAATAAATAAAAGCGACCCTAATACTCATTTCAGTTAAATTGATGACAAGCAGTCAAGGACTTGTTCTCGTGCTTGAAAATATTATTTGGATTTAGAAGGAAGTAGTCACTCTATAGTAATTCATATGAAACGTGCAACACCCCTCATATCAGTTCCGTGATTCCAAGAAAGCCGAAATAATAATAACACTGGAGAGGCAAAATTCTTACTGTCATAAATCTGACAACGGACAATCAAAACATAATATATATCACTTGTTTTTTCGACAGAACGGTTGTGTAACATTTGACGATTCTGTAATTCCCAGACTGGTTACATCCCATTTGATGACATGTAACTTTGAACCGACTAGACAAGATAACTTATTACAAAGACAAAA
Unaligned ( gi|7 ): GTAAATTATGACCTGACAAATAAAGCGATTAAAATTTCAAAAATAATAAATAAAAGCGACCCTAATACTCATTTCATTTAAACTGATGACAAGCAATCTTGGACTTGATCTCGTGCTCGAAAATATTATTTGGATTTAGATGGAAGTAGTCACTCTATAGAAATTCATATTAAACGTGCAACACTCCTCATATAAGTTCCATTATTCCAAGAAAGCAGAAATAAAAATAACACTGGCGAGGCAAAATTCTAACTGTCTTAAATCTGACAACGGACAATCAAAACATAATATGTATCACATGGTTGGGTAACACTTGACGCTTCTGTTATTCCCAGACTGATTACATCCAAGTTGATGAAATGTAACTTTGAACCGACTAGACAAGATAACTTATTGCAAAGACAAAATGT
Unaligned ( gi|9 ): ACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCACCATATACAATAATGTTTAAATTTTAAATTAATTATATACTATCTGTTATTTCTGGAAAACCAGACTTATTTATCAA
Unaligned ( gi|10 ): TAAATTTATTATGCACTATACGTTATTTCTAGTAAACCAGATTAATTTATTTAATCAACATGTGACATATTAAATACTATTACCCATTTTGAGCAGTCAACTATGCATTTTGGTTAAATAGTATGATCTATTATCAGCTGGTCTTTGGCGATTATACAATAGTATTTTGCATGAGATATAATAGCTATTATTTAATAACTTGCCAGAAAACTTTATCAGAATAT
Unaligned ( gi|14 ): CTGGAAAGACAAGTTTTATGACAACTGGCAATCAAAGCATTTTAGATGCGAAGCTTGTGTGCCATATGTCCATTCTGTTATTTCCAGACTGGTTACCTGTCATCAGAGGACATACAACTAGACAAGATATATTG
Unaligned ( gi|15 ): AACGGTCATAAATCTGACAACGGGCAATTAATGACGCAAGGGTCCATTCTGTTTTTTTCAGCCGGGTTACATATCATTTGAGGACATATAACTTTGTACCAGCGTTACAAGATAACTGAATACATAGACAAAA
Unaligned ( gi|16 ): TAATATTTGTTTCAGTTAAATTGATGACTAACATTCCAAGAATTTGTTCTAATGCTTGAAAATTATATTTAGATTTAGAAGGTTGTTGTAACTCTGACGTGCATATAGAACGGGCAACAATTTTGTATATA
Unaligned ( gi|18 ): ATATGATAGACCCTTCTTGTAAATTGCTGACCCCACAAACAAGCGATTAAAATTTAAAAAATAAAAAATAAAAACAAACCTGATACTTATTTCAGTTAAATTGATGACCAAAATT
Unaligned ( gi|23 ): TTCACGATTCCAAAAAATCAGAAATAATAACAACACGAAAGACAAAATTCCAATGGACTTGAATTTGACAACGGACAAAC
Unaligned ( gi|24 ): TATCTACTGCAGCGGTTGAAATACGAAAGACTGTTTCCCGCTGGAGCAGTTAACAGTACATTTCAATGAAATAGTAA
Unaligned ( gi|25 ): AATGCTTGTGAAGATATTATTTGAATTTTGAAAGTTATTGTAACTCTGCCCTCCATATGAAACATA
Unaligned ( gi|27 ): TCATGATTCCAGGGAATCAGAAATGGTAACAACATGAATGCACAATATCCATA
Alignments
lowQualScore : 222 111 1 7777777777777777777 111 1 1111 222222 44444444 11111 1 111 111 111 111
lowQualScore : 1 22 0 333 1 999 0 2 0 1111111111111111111 0 1 1 1 0 0 999 2 0 0 0 2 3 1 0 555 3 44 1 44 0 7 1 66 44 2 77 4444 55 1 111111 55555555 22 77777 0 0 777 1 1 0 777 777 1 22 1 777 99 6 22 0
lowQualScore : . .. . ... . ... . . . ................... . . . . . . ... . . . . . . . . ... . .. . .. . . . .. .. . .. .... .. . ...... ........ .. ..... . . ... . . . ... ... . .. . ... .. . .. .
lowQualScore : 0 00 7 333 0 777 0 5 2 2222222222222222222 2 0 0 0 2 8 000 5 0 2 2 0 1 4 5 888 3 66 8 66 9 9 3 00 88 5 77 2222 88 0 000000 22222222 88 88888 2 0 555 0 0 2 555 555 2 00 2 555 00 4 00 2
consensus : TGACAGGGCAATGCACTNACTAACACAANNAGCGGCAGGACGA---GGCNCTAACTGACAAAATT-G-TGACAGGACAN-A-CANTGG---------TGGCAGGACAANGCNCTNACTGACAAAATTGGTGGCAGGACAACAACAT-TGGTGGCAGGACAAGGCACTAACTGACACAATTGGTGGCAGGACAAGGCACTAACTG-ACAAAATTGGTGACAG---GAC-AAGGCACTAACTGAC--AAAATTGGTG--GCAGGACAAGGCACTAACTGACAAAATTGGTGACAGGACAATGCACTNNCTGACAAAATTGGTGGCAGGA-CAAG----GCANTTACTGACAA-----AATTGGTGGCAGTG--AG-CAAGGCACTAACTGGCAAAATCGG-TGGC---AGGACAAGGCACTAACTGNCAAAANTGGTGACAGGACAAGGCACT---AACT---GACAAAANNGGTGAC---AGGACAAGGCACTAACCGACAAAATTGGTGGCAGGACAAGGCACTAACTGACAC
Reference ( family-5369 ) : TGACAGGGCAATGCACTNACTAACACAANNAGCGGCAGGACGA---GGCNCTAACTGACAAAATT-G-TGACAGGACAN-A-CANTGG---------TGGCAGGACAANGCNCTNACTGACAAAATTGGTGGCAGGACAACAACAT-TGGTGGCAGGACAAGGCACTAACTGACACAATTGGTGGCAGGACAAGGCACTAACTG-ACAAAATTGGTGACAG---GAC-AAGGCACTAACTGAC--AAAATTGGTG--GCAGGACAAGGCACTAACTGACAAAATTGGTGACAGGACAATGCACTNNCTGACAAAATTGGTGGCAGGA-CAAG----GCACTTACTGACAA-----AATTGGTGGCAGTG--AG-CAAGGCACTAACTGGCAAAATCGG-TGGC---AGGACAAGGCACTAACTGNCAAAANTGGTGACAGGACAAGGCACT---AACT---GACAAAANNGGTGAC---AGGACAAGGCACTAACCGACAAAATTGGTGGCAGGACAAGGCACTAACTGACAC
gi|1 : CAGGACAA---TGCTCTAACAGACAAAATT-GGTGACAGGACAA-AGCAGTGGCAAAACAGATGGCAAGACAATGCTCTAACAGATAAAATTGGTGACAGGACAA--A-AT-CGGTGGTAGGAAAAGGCACTAACTGACAAAAACTGCGACGGGATAAAGCACTGACTG-ACAAAAATGGCGACAG---GGC-AAGACACTTACTGA
gi|11 : ACACAATCTGTGGCAGGACAAATCACAAACTA-ACAAAATCGATGACAG---GAC-GAAGCACTAACTGAC--ATAATTGACG--GCAAGACAAGGCCCTAACTGACAAAATTGGCGACAGGACGAGGCACTTACTAATACAATTGGCCACAGGA-CAAGCAAAGCACTTGCTGACAA-----TATAGAAGGCCCTG--GGCCAAGGCACTAACTGattttcagccagatcattattactgatgtcgttataacttattaaatataaaatataaagtgtgcctttttaaagaagatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacacaattaaatttaataatcattaaacgttatttctggaaaaccagatttatttatcaacatgtttataaactgtttgcaattttgagcggatttttacgaaatagtacgtactattatccgctggtccatgggggttaagtatttagcttgacatataataataaatattatttgataacttactcgaaaactttatatgccggaacatgtaaaccacaaggagagttctattatatatttagatagactagtcatttatgtggcatttctggctgatctttaaaaaaacatataattaaaccccaatgtaaactgctgacatcacaaacgaagcgataaaaaatgacaacaaacctgacatttgtttcagttaaatagatgccaatcattacatggatttgtccttgtgtttggaaatgttaggttattgtaactctaccctctatat
gi|12 : TAACTGACACAATTAGTGACAGAATATCACGCTAACTG-ACACAATTTGTGGCAG---AAT-AAGGCGCTAACTGAC--ACAATTTGTG--GCAGAATATGGCGCTAACTGACACAAATAGTGGAAGAActaat
gi|13 : tagaaaagattatactagaaaatttgtatgatataattaaatttagtagaatatactgtaatagagACTAATTAACATAATTGGTTGCAGGACAAGGCACTAACTG-ACACATTTGGTAGCAG---GAC-AATACAATCACTGAG--AAAATCGGT---GCAGGACAATGTACTAACTGACAAAATTGCTGTCAGGACAATACATTAGCTGACTAAAT--------GGATTATG----GAAATAACTGACAA-----AATTGGt
gi|17 : ACTGACAAAATCAG-TGAC---AGGACGAGGCACTAACTGACAAAAGCAATGACAGGAAAAGGCACT---AACT---AACAAAAAGGATGAC---AGATAAAGGCACTAAATGACATAATTGGTGGCAGGATAAGGCACTA
gi|19 : TGACAAAATTTGTGGCAGGACAAGACTCTAACTG-ACAGAATTGGTGGCAT---GAC-AAGGCTCTAACTGAC--AGAATTGGTG--GCATGACAAGGCTCTAACTGACAAAATTGGTGGC
gi|2 : ACAAATTGACATCATTGGTGGCAGAACAAGGTACTAGTTG-CCGAAA
gi|20 : actaattgGACTN---NNN-NNNNNNCTAACTGAC--AAAATTGGTG--ACAGGATGAGGCACTAACTAACAAAA--GTTAAAAAGAAAATGCTCTTACTGACAAAA-TGTTGACTGGA-AAAG----Ggtatactaaatgatgtgttcaacctaatgatcgtttactgatgtcgtcatagtttattcaattttaaagaagatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatacaagtatgtacatattatattatgcactatacgctatttatggaaaatcagatttatcaacatgtgacagttaagatactgttttcctaatttgagtagttaacgatatattttgatgaaatagtaagtattatccgctggtcaatgcggattaaacattagtattttgcgtgagatataaaaataactacatgtgtatttttaataacatgctagaaaactttgagtatcggtactgcttgtaaaacacatatcttatactttatacatagcttgtctatgaaacaaacatgtaacagaaacctccttttaaattaatgacctgtaaaccaatcgatttcaatttaaaaaaatagaagaaaaacaaactcgatatttgtctcatttgaaataatgacagttatttactaagatttgtcttagtgcttgaaaccattatttggattttgaaggttgtagtaactctgccctcaacatgaaacatgcaacacccctcgctgccactattac
gi|21 : ggttaACTTACTC-ACAAAAATGTTTACAG---GAC-AAAGCACTAAC--AC----AACCAGTC--CCAGGACAATGTATTGACTGGCAACCGTGATAACTGGA-ACTACATTAACTGACAAA
gi|22 : acaACTGGCACAATTGGTGGCAGGACAAGGCACTAACTGAAAAAAAATGGTGACAG---GACTAAG--ATTAATAGGCTAAGAATAGATG--G
gi|26 : TACCTG-ACACAATTGTTGACAG---AAC-AAGGCACTA----GC--ATAATAAGTG--GCTGGAAAAGACAaaaac
gi|28 : CAAGTCACGAACGAACACAATTGGTTGCAGGTCATGGCACTACCTG-ACAA
gi|29 : ATTGAC--AAAATTAGTGTGGCAGGACAAGGCACTAATTGACAAAATTGG
gi|3 : TGACAGGGCAATGTACTTATTAACACAAATAATGGCAGGACAA---GGCCCTTACTGAGAACATTTG-TGGCAGGACAC-A--AATGG---------TGGCAGGACAAGGCCCTTACTGAAAACATTTGTGGCAGGACA----CATATGGTAGCAGGACAAGACACTAATTAACACAACTGGTTGCAGGACAAGGCACTATCTA-ATAAAAATGATAGCAT---GGC-AAAACACTAAATGAC--AAATTTGGCG--GCAGAGTAAGTCACTAACTGACAAAATTGGTGAGAGGACAAGGCACCATCTGACACAGTTGTTGGCAGGA-CAAG----GC----ACTGGCAA-----AATTGGTTGCAGTGTAAG-TAAGACACTAACTGGCAAAATAGA-AGGCCCTATGACAAGGAACAAACCGACAAATTTGGTGACAGGACAAGACACT---AACTAGCGGCAAAATAGAAAGCCCTAGGACAAGGCACAAAACGAATAAATCTGTGGCAGAACAAGACAATAACTGACAC
gi|4 : ACTAACCAACAAAACTGGAGACAGGACAATGCACTAACTAACAC
gi|4 : taGACAGGACAATGCACTAACTAACACAATAAGCGACAAGACGACACGGCATTAACTGACAAAA---G-TGA--------------------------TTGCATGAAAATGCACACACTGACATGACTGGTGGCAGGACAACAACAT-TATTGGCAGGACAAGGCACGAGCCATCTAAATTGGTGTCAGGACAAGACACTAATCA-TCACACTAAGTGACAGAGCGAC-AAGGCACTAACTAAC--AAATCTGATC--GTAGGAAAAGGCACTAACTTACAAAATTGGTAGCAGGA------------TAACAAAATTAGTGGCAGGA-AAAT----GCAATTACTGACAA-----CATTGGTGACAG-G--A--CAAGGTACTGACT----AAATCGG-TGGC---AGGACAAAGCACTAACTGTCAAAATTGGTGACCGGACAATGCACTATAAACT---GACAAAAATAGTGTC---AGGACAATACACTAACTGACAAaataagcgacaagacgacacggcattaactgacaaaagtgattgcatgaaaatgcacacactgacatgactggtggcaggacaacaacattattggcaggacaaggcacgagccatctaaattggtgtcaggacaagacactaatcatcacactaagtgacagagcgacaaggcactaactaacaaatctgatcgtaggaaaaggcactaacttacaaaattggtagcaggataacaaaattagtggcaggaaaatgcaattactgacaacattggtgacaggacaaggtactgactaaatcggtggcaggacaaagcactaactgtcaaaattggtgaccggacaatgcactataaactgacaaaaatagtgtcaggacaatacactaactgacaaa
gi|8 : taactaaccaacaaaactgga-TGACAGAACAGTATCATTGG---------TGACAGGACAAGGCACTGACTGTCAAAATTGGTGACAGGACAATAACAT-TTGTGACAGGACAAGGCACTGACTGTCAACATTGTTGGCAGGACAA-----TAAC--------ATTATTGACAA---GAC-AAGGCACTGATTGTC--AAAATTGGCA--GCAGGACAA---------TTACA---TTGTTGACAGAACAATGCACTTTCTGACAAAAGCGGTGGCATGA-CAAA----GCACTTACTGACAAGACAAAATTGGTGACAG--------AA--CAGTAAC-------ATTGGATGAC---AGGACAAGGCACTAACTGTCAAAAATAGTGACAGGACAAAGCAAT---GACT---GTAAAAATTGGTGAC---AGGACAA-----TAAC-------ATTGGTAACAGGAAAAG
13 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): GGTGATTGTAGTAGTAGTGGTAGAACCCCCTCTTGTAAATTGATAACCTGACAAATCATGCGATTAAAATTCAAAAATAATAAATAAAATCGACCCTTATACTCATTTCAGTTGAATTGATGACAAGCAGTCTAGTACTTGTCCTCGTGCTTGAAATTATTATTTGGATTTTGAAGGAAGTAGTCACTCTATAGTAATTCATATCAAATGTGCCACACTTCTTATATCAGTACCACGATTCCAAGAAAGCAGAAATAATAATAACACTGGAGAGGCACAATTCTGTATTAAATCTGACAACGGACAATCAAAACATAATATGTATCACTTGTTTTCAACGGAACAGTTGTGTAACACTTGACGATTCTGTTATTCCCAGACTGGTTACAACATCCCATTTGATGACATTGAACTTTGAACCGACTAGACAAGATAC
Unaligned ( gi|6 ): ACCCCCTCTTGTAAATTGATAACCTGACAAATAAAGCGATTAAAAATAAAAAAAATAATAAATAAAAGCGACCCTAATACTCATTTCAGTTAAATTGATGACAAGCAGTCAAGGACTTGTTCTCGTGCTTGAAAATATTATTTGGATTTAGAAGGAAGTAGTCACTCTATAGTAATTCATATGAAACGTGCAACACCCCTCATATCAGTTCCGTGATTCCAAGAAAGCCGAAATAATAATAACACTGGAGAGGCAAAATTCTTACTGTCATAAATCTGACAACGGACAATCAAAACATAATATATATCACTTGTTTTTTCGACAGAACGGTTGTGTAACATTTGACGATTCTGTAATTCCCAGACTGGTTACATCCCATTTGATGACATGTAACTTTGAACCGACTAGACAAGATAACTTATTACAAAGACAAAA
Unaligned ( gi|7 ): GTAAATTATGACCTGACAAATAAAGCGATTAAAATTTCAAAAATAATAAATAAAAGCGACCCTAATACTCATTTCATTTAAACTGATGACAAGCAATCTTGGACTTGATCTCGTGCTCGAAAATATTATTTGGATTTAGATGGAAGTAGTCACTCTATAGAAATTCATATTAAACGTGCAACACTCCTCATATAAGTTCCATTATTCCAAGAAAGCAGAAATAAAAATAACACTGGCGAGGCAAAATTCTAACTGTCTTAAATCTGACAACGGACAATCAAAACATAATATGTATCACATGGTTGGGTAACACTTGACGCTTCTGTTATTCCCAGACTGATTACATCCAAGTTGATGAAATGTAACTTTGAACCGACTAGACAAGATAACTTATTGCAAAGACAAAATGT
Unaligned ( gi|9 ): ACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCACCATATACAATAATGTTTAAATTTTAAATTAATTATATACTATCTGTTATTTCTGGAAAACCAGACTTATTTATCAA
Unaligned ( gi|10 ): TAAATTTATTATGCACTATACGTTATTTCTAGTAAACCAGATTAATTTATTTAATCAACATGTGACATATTAAATACTATTACCCATTTTGAGCAGTCAACTATGCATTTTGGTTAAATAGTATGATCTATTATCAGCTGGTCTTTGGCGATTATACAATAGTATTTTGCATGAGATATAATAGCTATTATTTAATAACTTGCCAGAAAACTTTATCAGAATAT
Unaligned ( gi|14 ): CTGGAAAGACAAGTTTTATGACAACTGGCAATCAAAGCATTTTAGATGCGAAGCTTGTGTGCCATATGTCCATTCTGTTATTTCCAGACTGGTTACCTGTCATCAGAGGACATACAACTAGACAAGATATATTG
Unaligned ( gi|15 ): AACGGTCATAAATCTGACAACGGGCAATTAATGACGCAAGGGTCCATTCTGTTTTTTTCAGCCGGGTTACATATCATTTGAGGACATATAACTTTGTACCAGCGTTACAAGATAACTGAATACATAGACAAAA
Unaligned ( gi|16 ): TAATATTTGTTTCAGTTAAATTGATGACTAACATTCCAAGAATTTGTTCTAATGCTTGAAAATTATATTTAGATTTAGAAGGTTGTTGTAACTCTGACGTGCATATAGAACGGGCAACAATTTTGTATATA
Unaligned ( gi|18 ): ATATGATAGACCCTTCTTGTAAATTGCTGACCCCACAAACAAGCGATTAAAATTTAAAAAATAAAAAATAAAAACAAACCTGATACTTATTTCAGTTAAATTGATGACCAAAATT
Unaligned ( gi|23 ): TTCACGATTCCAAAAAATCAGAAATAATAACAACACGAAAGACAAAATTCCAATGGACTTGAATTTGACAACGGACAAAC
Unaligned ( gi|24 ): TATCTACTGCAGCGGTTGAAATACGAAAGACTGTTTCCCGCTGGAGCAGTTAACAGTACATTTCAATGAAATAGTAA
Unaligned ( gi|25 ): AATGCTTGTGAAGATATTATTTGAATTTTGAAAGTTATTGTAACTCTGCCCTCCATATGAAACATA
Unaligned ( gi|27 ): TCATGATTCCAGGGAATCAGAAATGGTAACAACATGAATGCACAATATCCATA
Alignments
lowQualScore : 222 111 1 7777777777777777777 111 1 1111 222222 44444444 11111 1 111 111 111 111
lowQualScore : 1 22 0 333 1 999 0 2 0 1111111111111111111 0 1 1 1 0 0 999 2 0 0 0 2 3 1 0 555 3 44 1 44 0 7 1 66 44 2 77 4444 44 1 111111 55555555 22 77777 0 0 777 1 1 0 777 777 1 22 1 777 99 6 22 0
lowQualScore : . .. . ... . ... . . . ................... . . . . . . ... . . . . . . . . ... . .. . .. . . . .. .. . .. .... .. . ...... ........ .. ..... . . ... . . . ... ... . .. . ... .. . .. .
lowQualScore : 0 00 7 333 0 777 0 5 2 2222222222222222222 2 0 0 0 2 8 000 5 0 2 2 0 1 4 5 888 3 66 8 66 9 9 3 00 88 5 77 2222 66 0 000000 22222222 88 88888 2 0 555 0 0 2 555 555 2 00 2 555 00 4 00 2
consensus : TGACAGGGCAATGCACTNACTAACACAANNAGCGGCAGGACGA---GGCNCTAACTGACAAAATT-G-TGACAGGACAN-A-CANTGG---------TGGCAGGACAANGCNCTNACTGACAAAATTGGTGGCAGGACAACAACAT-TGGTGGCAGGACAAGGCACTAACTGACACAATTGGTGGCAGGACAAGGCACTAACTG-ACAAAATTGGTGACAG---GAC-AAGGCACTAACTGAC--AAAATTGGTG--GCAGGACAAGGCACTAACTGACAAAATTGGTGACAGGACAATGCACTNNCTGACAAAATTGGTGGCAGGA-CAAG----GCANTTACTGACAA-----AATTGGTGGCAGTG--AG-CAAGGCACTAACTGGCAAAATCGG-TGGC---AGGACAAGGCACTAACTGNCAAAANTGGTGACAGGACAAGGCACT---AACT---GACAAAANNGGTGAC---AGGACAAGGCACTAACCGACAAAATTGGTGGCAGGACAAGGCACTAACTGACAC
Reference ( family-5369 ) : TGACAGGGCAATGCACTNACTAACACAANNAGCGGCAGGACGA---GGCNCTAACTGACAAAATT-G-TGACAGGACAN-A-CANTGG---------TGGCAGGACAANGCNCTNACTGACAAAATTGGTGGCAGGACAACAACAT-TGGTGGCAGGACAAGGCACTAACTGACACAATTGGTGGCAGGACAAGGCACTAACTG-ACAAAATTGGTGACAG---GAC-AAGGCACTAACTGAC--AAAATTGGTG--GCAGGACAAGGCACTAACTGACAAAATTGGTGACAGGACAATGCACTNNCTGACAAAATTGGTGGCAGGA-CAAG----GCANTTACTGACAA-----AATTGGTGGCAGTG--AG-CAAGGCACTAACTGGCAAAATCGG-TGGC---AGGACAAGGCACTAACTGNCAAAANTGGTGACAGGACAAGGCACT---AACT---GACAAAANNGGTGAC---AGGACAAGGCACTAACCGACAAAATTGGTGGCAGGACAAGGCACTAACTGACAC
gi|1 : CAGGACAA---TGCTCTAACAGACAAAATT-GGTGACAGGACAA-AGCAGTGGCAAAACAGATGGCAAGACAATGCTCTAACAGATAAAATTGGTGACAGGACAA--A-AT-CGGTGGTAGGAAAAGGCACTAACTGACAAAAACTGCGACGGGATAAAGCACTGACTG-ACAAAAATGGCGACAG---GGC-AAGACACTTACTGA
gi|11 : ACACAATCTGTGGCAGGACAAATCACAAACTA-ACAAAATCGATGACAG---GAC-GAAGCACTAACTGAC--ATAATTGACG--GCAAGACAAGGCCCTAACTGACAAAATTGGCGACAGGACGAGGCACTTACTAATACAATTGGCCACAGGA-CAAGCAAAGCACTTGCTGACAA-----TATAGAAGGCCCTG--GGCCAAGGCACTAACTGattttcagccagatcattattactgatgtcgttataacttattaaatataaaatataaagtgtgcctttttaaagaagatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacacaattaaatttaataatcattaaacgttatttctggaaaaccagatttatttatcaacatgtttataaactgtttgcaattttgagcggatttttacgaaatagtacgtactattatccgctggtccatgggggttaagtatttagcttgacatataataataaatattatttgataacttactcgaaaactttatatgccggaacatgtaaaccacaaggagagttctattatatatttagatagactagtcatttatgtggcatttctggctgatctttaaaaaaacatataattaaaccccaatgtaaactgctgacatcacaaacgaagcgataaaaaatgacaacaaacctgacatttgtttcagttaaatagatgccaatcattacatggatttgtccttgtgtttggaaatgttaggttattgtaactctaccctctatat
gi|12 : TAACTGACACAATTAGTGACAGAATATCACGCTAACTG-ACACAATTTGTGGCAG---AAT-AAGGCGCTAACTGAC--ACAATTTGTG--GCAGAATATGGCGCTAACTGACACAAATAGTGGAAGAActaat
gi|13 : tagaaaagattatactagaaaatttgtatgatataattaaatttagtagaatatactgtaatagagACTAATTAACATAATTGGTTGCAGGACAAGGCACTAACTG-ACACATTTGGTAGCAG---GAC-AATACAATCACTGAG--AAAATCGGT---GCAGGACAATGTACTAACTGACAAAATTGCTGTCAGGACAATACATTAGCTGACTAAAT--------GGATTATG----GAAATAACTGACAA-----AATTGGt
gi|17 : ACTGACAAAATCAG-TGAC---AGGACGAGGCACTAACTGACAAAAGCAATGACAGGAAAAGGCACT---AACT---AACAAAAAGGATGAC---AGATAAAGGCACTAAATGACATAATTGGTGGCAGGATAAGGCACTA
gi|19 : TGACAAAATTTGTGGCAGGACAAGACTCTAACTG-ACAGAATTGGTGGCAT---GAC-AAGGCTCTAACTGAC--AGAATTGGTG--GCATGACAAGGCTCTAACTGACAAAATTGGTGGC
gi|2 : ACAAATTGACATCATTGGTGGCAGAACAAGGTACTAGTTG-CCGAAA
gi|20 : actaattgGACTN---NNN-NNNNNNCTAACTGAC--AAAATTGGTG--ACAGGATGAGGCACTAACTAACAAAA--GTTAAAAAGAAAATGCTCTTACTGACAAAA-TGTTGACTGGA-AAAG----Ggtatactaaatgatgtgttcaacctaatgatcgtttactgatgtcgtcatagtttattcaattttaaagaagatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatacaagtatgtacatattatattatgcactatacgctatttatggaaaatcagatttatcaacatgtgacagttaagatactgttttcctaatttgagtagttaacgatatattttgatgaaatagtaagtattatccgctggtcaatgcggattaaacattagtattttgcgtgagatataaaaataactacatgtgtatttttaataacatgctagaaaactttgagtatcggtactgcttgtaaaacacatatcttatactttatacatagcttgtctatgaaacaaacatgtaacagaaacctccttttaaattaatgacctgtaaaccaatcgatttcaatttaaaaaaatagaagaaaaacaaactcgatatttgtctcatttgaaataatgacagttatttactaagatttgtcttagtgcttgaaaccattatttggattttgaaggttgtagtaactctgccctcaacatgaaacatgcaacacccctcgctgccactattac
gi|21 : ggttaACTTACTC-ACAAAAATGTTTACAG---GAC-AAAGCACTAAC--AC----AACCAGTC--CCAGGACAATGTATTGACTGGCAACCGTGATAACTGGA-ACTACATTAACTGACAAA
gi|22 : acaACTGGCACAATTGGTGGCAGGACAAGGCACTAACTGAAAAAAAATGGTGACAG---GACTAAG--ATTAATAGGCTAAGAATAGATG--G
gi|26 : TACCTG-ACACAATTGTTGACAG---AAC-AAGGCACTA----GC--ATAATAAGTG--GCTGGAAAAGACAaaaac
gi|28 : CAAGTCACGAACGAACACAATTGGTTGCAGGTCATGGCACTACCTG-ACAA
gi|29 : ATTGAC--AAAATTAGTGTGGCAGGACAAGGCACTAATTGACAAAATTGG
gi|3 : TGACAGGGCAATGTACTTATTAACACAAATAATGGCAGGACAA---GGCCCTTACTGAGAACATTTG-TGGCAGGACAC-A--AATGG---------TGGCAGGACAAGGCCCTTACTGAAAACATTTGTGGCAGGACA----CATATGGTAGCAGGACAAGACACTAATTAACACAACTGGTTGCAGGACAAGGCACTATCTA-ATAAAAATGATAGCAT---GGC-AAAACACTAAATGAC--AAATTTGGCG--GCAGAGTAAGTCACTAACTGACAAAATTGGTGAGAGGACAAGGCACCATCTGACACAGTTGTTGGCAGGA-CAAG----GC----ACTGGCAA-----AATTGGTTGCAGTGTAAG-TAAGACACTAACTGGCAAAATAGA-AGGCCCTATGACAAGGAACAAACCGACAAATTTGGTGACAGGACAAGACACT---AACTAGCGGCAAAATAGAAAGCCCTAGGACAAGGCACAAAACGAATAAATCTGTGGCAGAACAAGACAATAACTGACAC
gi|4 : ACTAACCAACAAAACTGGAGACAGGACAATGCACTAACTAACAC
gi|4 : taGACAGGACAATGCACTAACTAACACAATAAGCGACAAGACGACACGGCATTAACTGACAAAA---G-TGA--------------------------TTGCATGAAAATGCACACACTGACATGACTGGTGGCAGGACAACAACAT-TATTGGCAGGACAAGGCACGAGCCATCTAAATTGGTGTCAGGACAAGACACTAATCA-TCACACTAAGTGACAGAGCGAC-AAGGCACTAACTAAC--AAATCTGATC--GTAGGAAAAGGCACTAACTTACAAAATTGGTAGCAGGA------------TAACAAAATTAGTGGCAGGA-AAAT----GCAATTACTGACAA-----CATTGGTGACAG-G--A--CAAGGTACTGACT----AAATCGG-TGGC---AGGACAAAGCACTAACTGTCAAAATTGGTGACCGGACAATGCACTATAAACT---GACAAAAATAGTGTC---AGGACAATACACTAACTGACAAaataagcgacaagacgacacggcattaactgacaaaagtgattgcatgaaaatgcacacactgacatgactggtggcaggacaacaacattattggcaggacaaggcacgagccatctaaattggtgtcaggacaagacactaatcatcacactaagtgacagagcgacaaggcactaactaacaaatctgatcgtaggaaaaggcactaacttacaaaattggtagcaggataacaaaattagtggcaggaaaatgcaattactgacaacattggtgacaggacaaggtactgactaaatcggtggcaggacaaagcactaactgtcaaaattggtgaccggacaatgcactataaactgacaaaaatagtgtcaggacaatacactaactgacaaa
gi|8 : taactaaccaacaaaactgga-TGACAGAACAGTATCATTGG---------TGACAGGACAAGGCACTGACTGTCAAAATTGGTGACAGGACAATAACAT-TTGTGACAGGACAAGGCACTGACTGTCAACATTGTTGGCAGGACAA-----TAAC--------ATTATTGACAA---GAC-AAGGCACTGATTGTC--AAAATTGGCA--GCAGGACAA---------TTACA---TTGTTGACAGAACAATGCACTTTCTGACAAAAGCGGTGGCATGA-CAAA----GCACTTACTGACAAGACAAAATTGGTGACAG--------AA--CAGTAAC-------ATTGGATGAC---AGGACAAGGCACTAACTGTCAAAAATAGTGACAGGACAAAGCAAT---GACT---GTAAAAATTGGTGAC---AGGACAA-----TAAC-------ATTGGTAACAGGAAAAG
blockSeqs : A TA CAC C TTT . C GTATCATTGG G C T ACA C A C A A AGC T TA C TG C T AG TT T TT . AA A GACAAA TGTAAGT GA TGGCA A CCT A T ATA AGC G TA G CCT GG C TA
blockSeqs : . A . . C CAAATGG T A C ATA C . C . C . . . A . A T TA TT T A . AA T A GAC GG T . . T T . . A AT T . TA C AA
blockSeqs : . . . G A G . C . T . C . . . G . C T AA GC G C . AC T A . . . . . T A . . T TT A . . T AA
blockSeqs : A . G . . . A . C G AT T G A . . . C . .
blockSeqs : T . A . . . G . . T TT T . C .
blockSeqs : C . A . . . T . . . .
blockSeqs : C . A . . . A .
blockSeqs : C . C . . . A .
blockSeqs : A . A . . . A .
blockSeqs : A . A . . . A .
blockSeqs : . C . . . . .
blockSeqs : . .
blockSeqCons : ****
originalCons : TGACAGGGCAATGCACTNACTAACACAANNAGCGGCAGGACGA---GGCNCTAACTGACAAAATT-G-TGACAGGACAN-A-CANTGG---------TGGCAGGACAANGCNCTNACTGACAAAATTGGTGGCAGGACAACAACAT-TGGTGGCAGGACAAGGCACTAACTGACACAATTGGTGGCAGGACAAGGCACTAACTG-ACAAAATTGGTGACAG---GAC-AAGGCACTAACTGAC--AAAATTGGTG--GCAGGACAAGGCACTAACTGACAAAATTGGTGACAGGACAATGCACTNNCTGACAAAATTGGTGGCAGGA-CAAG----GCANTTACTGACAA-----AATTGGTGGCAGTG--AG-CAAGGCACTAACTGGCAAAATCGG-TGGC---AGGACAAGGCACTAACTGNCAAAANTGGTGACAGGACAAGGCACT---AACT---GACAAAANNGGTGAC---AGGACAAGGCACTAACCGACAAAATTGGTGGCAGGACAAGGCACTAACTGACAC
finalCons : TGACAGGGCAATGCACTNACTAACACAANNAGCGGCAGGACGA---GGCNCTAACTGACAAAATT-G-TGACAGGACAN-A-CANTGG---------TGGCAGGACAANGCNCTNACTGACAAAATTGGTGGCAGGACAACAACAT-TGGTGGCAGGACAAGGCACTAACTGACACAATTGGTGGCAGGACAAGGCACTAACTG-ACAAAATTGGTGACAG---GAC-AAGGCACTAACTGAC--AAAATTGGTG--GCAGGACAAGGCACTAACTGACAAAATTGGTGACAGGACAATGCACTNNCTGACAAAATTGGTGGCAGGA-CAAG----GCANTTACTGACAA-----AATTGGTGGCAGTG--AG-CAAGGCACTAACTGGCAAAATCGG-TGGC---AGGACAAGGCACTAACTGNCAAAANTGGTGACAGGACAAGGCACT---AACT---GACAAAANNGGTGAC---AGGACAAGGCACTAACCGACAAAATTGGTGGCAGGACAAGGCACTAACTGACAC
13 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): GGTGATTGTAGTAGTAGTGGTAGAACCCCCTCTTGTAAATTGATAACCTGACAAATCATGCGATTAAAATTCAAAAATAATAAATAAAATCGACCCTTATACTCATTTCAGTTGAATTGATGACAAGCAGTCTAGTACTTGTCCTCGTGCTTGAAATTATTATTTGGATTTTGAAGGAAGTAGTCACTCTATAGTAATTCATATCAAATGTGCCACACTTCTTATATCAGTACCACGATTCCAAGAAAGCAGAAATAATAATAACACTGGAGAGGCACAATTCTGTATTAAATCTGACAACGGACAATCAAAACATAATATGTATCACTTGTTTTCAACGGAACAGTTGTGTAACACTTGACGATTCTGTTATTCCCAGACTGGTTACAACATCCCATTTGATGACATTGAACTTTGAACCGACTAGACAAGATAC
Unaligned ( gi|6 ): ACCCCCTCTTGTAAATTGATAACCTGACAAATAAAGCGATTAAAAATAAAAAAAATAATAAATAAAAGCGACCCTAATACTCATTTCAGTTAAATTGATGACAAGCAGTCAAGGACTTGTTCTCGTGCTTGAAAATATTATTTGGATTTAGAAGGAAGTAGTCACTCTATAGTAATTCATATGAAACGTGCAACACCCCTCATATCAGTTCCGTGATTCCAAGAAAGCCGAAATAATAATAACACTGGAGAGGCAAAATTCTTACTGTCATAAATCTGACAACGGACAATCAAAACATAATATATATCACTTGTTTTTTCGACAGAACGGTTGTGTAACATTTGACGATTCTGTAATTCCCAGACTGGTTACATCCCATTTGATGACATGTAACTTTGAACCGACTAGACAAGATAACTTATTACAAAGACAAAA
Unaligned ( gi|7 ): GTAAATTATGACCTGACAAATAAAGCGATTAAAATTTCAAAAATAATAAATAAAAGCGACCCTAATACTCATTTCATTTAAACTGATGACAAGCAATCTTGGACTTGATCTCGTGCTCGAAAATATTATTTGGATTTAGATGGAAGTAGTCACTCTATAGAAATTCATATTAAACGTGCAACACTCCTCATATAAGTTCCATTATTCCAAGAAAGCAGAAATAAAAATAACACTGGCGAGGCAAAATTCTAACTGTCTTAAATCTGACAACGGACAATCAAAACATAATATGTATCACATGGTTGGGTAACACTTGACGCTTCTGTTATTCCCAGACTGATTACATCCAAGTTGATGAAATGTAACTTTGAACCGACTAGACAAGATAACTTATTGCAAAGACAAAATGT
Unaligned ( gi|9 ): ACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCACCATATACAATAATGTTTAAATTTTAAATTAATTATATACTATCTGTTATTTCTGGAAAACCAGACTTATTTATCAA
Unaligned ( gi|10 ): TAAATTTATTATGCACTATACGTTATTTCTAGTAAACCAGATTAATTTATTTAATCAACATGTGACATATTAAATACTATTACCCATTTTGAGCAGTCAACTATGCATTTTGGTTAAATAGTATGATCTATTATCAGCTGGTCTTTGGCGATTATACAATAGTATTTTGCATGAGATATAATAGCTATTATTTAATAACTTGCCAGAAAACTTTATCAGAATAT
Unaligned ( gi|14 ): CTGGAAAGACAAGTTTTATGACAACTGGCAATCAAAGCATTTTAGATGCGAAGCTTGTGTGCCATATGTCCATTCTGTTATTTCCAGACTGGTTACCTGTCATCAGAGGACATACAACTAGACAAGATATATTG
Unaligned ( gi|15 ): AACGGTCATAAATCTGACAACGGGCAATTAATGACGCAAGGGTCCATTCTGTTTTTTTCAGCCGGGTTACATATCATTTGAGGACATATAACTTTGTACCAGCGTTACAAGATAACTGAATACATAGACAAAA
Unaligned ( gi|16 ): TAATATTTGTTTCAGTTAAATTGATGACTAACATTCCAAGAATTTGTTCTAATGCTTGAAAATTATATTTAGATTTAGAAGGTTGTTGTAACTCTGACGTGCATATAGAACGGGCAACAATTTTGTATATA
Unaligned ( gi|18 ): ATATGATAGACCCTTCTTGTAAATTGCTGACCCCACAAACAAGCGATTAAAATTTAAAAAATAAAAAATAAAAACAAACCTGATACTTATTTCAGTTAAATTGATGACCAAAATT
Unaligned ( gi|23 ): TTCACGATTCCAAAAAATCAGAAATAATAACAACACGAAAGACAAAATTCCAATGGACTTGAATTTGACAACGGACAAAC
Unaligned ( gi|24 ): TATCTACTGCAGCGGTTGAAATACGAAAGACTGTTTCCCGCTGGAGCAGTTAACAGTACATTTCAATGAAATAGTAA
Unaligned ( gi|25 ): AATGCTTGTGAAGATATTATTTGAATTTTGAAAGTTATTGTAACTCTGCCCTCCATATGAAACATA
Unaligned ( gi|27 ): TCATGATTCCAGGGAATCAGAAATGGTAACAACATGAATGCACAATATCCATA
Alignments
lowQualScore : 222 111 1 7777777777777777777 111 1 1111 222222 44444444 11111 1 111 111 111 111
lowQualScore : 1 22 0 333 1 999 0 2 0 1111111111111111111 0 1 1 1 0 0 999 2 0 0 0 2 3 1 0 555 3 44 1 44 0 7 1 66 44 2 77 4444 44 1 111111 55555555 22 77777 0 0 777 1 1 0 777 777 1 22 1 777 99 6 22 0
lowQualScore : . .. . ... . ... . . . ................... . . . . . . ... . . . . . . . . ... . .. . .. . . . .. .. . .. .... .. . ...... ........ .. ..... . . ... . . . ... ... . .. . ... .. . .. .
lowQualScore : 0 00 7 333 0 777 0 5 2 2222222222222222222 2 0 0 0 2 8 000 5 0 2 2 0 1 4 5 888 3 66 8 66 9 9 3 00 88 5 77 2222 66 0 000000 22222222 88 88888 2 0 555 0 0 2 555 555 2 00 2 555 00 4 00 2
consensus : TGACAGGGCAATGCACTNACTAACACAANNAGCGGCAGGACGA---GGCNCTAACTGACAAAATT-G-TGACAGGACAN-A-CANTGG---------TGGCAGGACAANGCNCTNACTGACAAAATTGGTGGCAGGACAACAACAT-TGGTGGCAGGACAAGGCACTAACTGACACAATTGGTGGCAGGACAAGGCACTAACTG-ACAAAATTGGTGACAG---GAC-AAGGCACTAACTGAC--AAAATTGGTG--GCAGGACAAGGCACTAACTGACAAAATTGGTGACAGGACAATGCACTNNCTGACAAAATTGGTGGCAGGA-CAAG----GCANTTACTGACAA-----AATTGGTGGCAGTG--AG-CAAGGCACTAACTGGCAAAATCGG-TGGC---AGGACAAGGCACTAACTGNCAAAANTGGTGACAGGACAAGGCACT---AACT---GACAAAANNGGTGAC---AGGACAAGGCACTAACCGACAAAATTGGTGGCAGGACAAGGCACTAACTGACAC
Reference ( family-5369 ) : TGACAGGGCAATGCACTNACTAACACAANNAGCGGCAGGACGA---GGCNCTAACTGACAAAATT-G-TGACAGGACAN-A-CANTGG---------TGGCAGGACAANGCNCTNACTGACAAAATTGGTGGCAGGACAACAACAT-TGGTGGCAGGACAAGGCACTAACTGACACAATTGGTGGCAGGACAAGGCACTAACTG-ACAAAATTGGTGACAG---GAC-AAGGCACTAACTGAC--AAAATTGGTG--GCAGGACAAGGCACTAACTGACAAAATTGGTGACAGGACAATGCACTNNCTGACAAAATTGGTGGCAGGA-CAAG----GCANTTACTGACAA-----AATTGGTGGCAGTG--AG-CAAGGCACTAACTGGCAAAATCGG-TGGC---AGGACAAGGCACTAACTGNCAAAANTGGTGACAGGACAAGGCACT---AACT---GACAAAANNGGTGAC---AGGACAAGGCACTAACCGACAAAATTGGTGGCAGGACAAGGCACTAACTGACAC
gi|1 : CAGGACAA---TGCTCTAACAGACAAAATT-GGTGACAGGACAA-AGCAGTGGCAAAACAGATGGCAAGACAATGCTCTAACAGATAAAATTGGTGACAGGACAA--A-AT-CGGTGGTAGGAAAAGGCACTAACTGACAAAAACTGCGACGGGATAAAGCACTGACTG-ACAAAAATGGCGACAG---GGC-AAGACACTTACTGA
gi|11 : ACACAATCTGTGGCAGGACAAATCACAAACTA-ACAAAATCGATGACAG---GAC-GAAGCACTAACTGAC--ATAATTGACG--GCAAGACAAGGCCCTAACTGACAAAATTGGCGACAGGACGAGGCACTTACTAATACAATTGGCCACAGGA-CAAGCAAAGCACTTGCTGACAA-----TATAGAAGGCCCTG--GGCCAAGGCACTAACTGattttcagccagatcattattactgatgtcgttataacttattaaatataaaatataaagtgtgcctttttaaagaagatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacacaattaaatttaataatcattaaacgttatttctggaaaaccagatttatttatcaacatgtttataaactgtttgcaattttgagcggatttttacgaaatagtacgtactattatccgctggtccatgggggttaagtatttagcttgacatataataataaatattatttgataacttactcgaaaactttatatgccggaacatgtaaaccacaaggagagttctattatatatttagatagactagtcatttatgtggcatttctggctgatctttaaaaaaacatataattaaaccccaatgtaaactgctgacatcacaaacgaagcgataaaaaatgacaacaaacctgacatttgtttcagttaaatagatgccaatcattacatggatttgtccttgtgtttggaaatgttaggttattgtaactctaccctctatat
gi|12 : TAACTGACACAATTAGTGACAGAATATCACGCTAACTG-ACACAATTTGTGGCAG---AAT-AAGGCGCTAACTGAC--ACAATTTGTG--GCAGAATATGGCGCTAACTGACACAAATAGTGGAAGAActaat
gi|13 : tagaaaagattatactagaaaatttgtatgatataattaaatttagtagaatatactgtaatagagACTAATTAACATAATTGGTTGCAGGACAAGGCACTAACTG-ACACATTTGGTAGCAG---GAC-AATACAATCACTGAG--AAAATCGGT---GCAGGACAATGTACTAACTGACAAAATTGCTGTCAGGACAATACATTAGCTGACTAAAT--------GGATTATG----GAAATAACTGACAA-----AATTGGt
gi|17 : ACTGACAAAATCAG-TGAC---AGGACGAGGCACTAACTGACAAAAGCAATGACAGGAAAAGGCACT---AACT---AACAAAAAGGATGAC---AGATAAAGGCACTAAATGACATAATTGGTGGCAGGATAAGGCACTA
gi|19 : TGACAAAATTTGTGGCAGGACAAGACTCTAACTG-ACAGAATTGGTGGCAT---GAC-AAGGCTCTAACTGAC--AGAATTGGTG--GCATGACAAGGCTCTAACTGACAAAATTGGTGGC
gi|2 : ACAAATTGACATCATTGGTGGCAGAACAAGGTACTAGTTG-CCGAAA
gi|20 : actaattgGACTN---NNN-NNNNNNCTAACTGAC--AAAATTGGTG--ACAGGATGAGGCACTAACTAACAAAA--GTTAAAAAGAAAATGCTCTTACTGACAAAA-TGTTGACTGGA-AAAG----Ggtatactaaatgatgtgttcaacctaatgatcgtttactgatgtcgtcatagtttattcaattttaaagaagatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatacaagtatgtacatattatattatgcactatacgctatttatggaaaatcagatttatcaacatgtgacagttaagatactgttttcctaatttgagtagttaacgatatattttgatgaaatagtaagtattatccgctggtcaatgcggattaaacattagtattttgcgtgagatataaaaataactacatgtgtatttttaataacatgctagaaaactttgagtatcggtactgcttgtaaaacacatatcttatactttatacatagcttgtctatgaaacaaacatgtaacagaaacctccttttaaattaatgacctgtaaaccaatcgatttcaatttaaaaaaatagaagaaaaacaaactcgatatttgtctcatttgaaataatgacagttatttactaagatttgtcttagtgcttgaaaccattatttggattttgaaggttgtagtaactctgccctcaacatgaaacatgcaacacccctcgctgccactattac
gi|21 : ggttaACTTACTC-ACAAAAATGTTTACAG---GAC-AAAGCACTAAC--AC----AACCAGTC--CCAGGACAATGTATTGACTGGCAACCGTGATAACTGGA-ACTACATTAACTGACAAA
gi|22 : acaACTGGCACAATTGGTGGCAGGACAAGGCACTAACTGAAAAAAAATGGTGACAG---GACTAAG--ATTAATAGGCTAAGAATAGATG--G
gi|26 : TACCTG-ACACAATTGTTGACAG---AAC-AAGGCACTA----GC--ATAATAAGTG--GCTGGAAAAGACAaaaac
gi|28 : CAAGTCACGAACGAACACAATTGGTTGCAGGTCATGGCACTACCTG-ACAA
gi|29 : ATTGAC--AAAATTAGTGTGGCAGGACAAGGCACTAATTGACAAAATTGG
gi|3 : TGACAGGGCAATGTACTTATTAACACAAATAATGGCAGGACAA---GGCCCTTACTGAGAACATTTG-TGGCAGGACAC-A--AATGG---------TGGCAGGACAAGGCCCTTACTGAAAACATTTGTGGCAGGACA----CATATGGTAGCAGGACAAGACACTAATTAACACAACTGGTTGCAGGACAAGGCACTATCTA-ATAAAAATGATAGCAT---GGC-AAAACACTAAATGAC--AAATTTGGCG--GCAGAGTAAGTCACTAACTGACAAAATTGGTGAGAGGACAAGGCACCATCTGACACAGTTGTTGGCAGGA-CAAG----GC----ACTGGCAA-----AATTGGTTGCAGTGTAAG-TAAGACACTAACTGGCAAAATAGA-AGGCCCTATGACAAGGAACAAACCGACAAATTTGGTGACAGGACAAGACACT---AACTAGCGGCAAAATAGAAAGCCCTAGGACAAGGCACAAAACGAATAAATCTGTGGCAGAACAAGACAATAACTGACAC
gi|4 : ACTAACCAACAAAACTGGAGACAGGACAATGCACTAACTAACAC
gi|4 : taGACAGGACAATGCACTAACTAACACAATAAGCGACAAGACGACACGGCATTAACTGACAAAA---G-TGA--------------------------TTGCATGAAAATGCACACACTGACATGACTGGTGGCAGGACAACAACAT-TATTGGCAGGACAAGGCACGAGCCATCTAAATTGGTGTCAGGACAAGACACTAATCA-TCACACTAAGTGACAGAGCGAC-AAGGCACTAACTAAC--AAATCTGATC--GTAGGAAAAGGCACTAACTTACAAAATTGGTAGCAGGA------------TAACAAAATTAGTGGCAGGA-AAAT----GCAATTACTGACAA-----CATTGGTGACAG-G--A--CAAGGTACTGACT----AAATCGG-TGGC---AGGACAAAGCACTAACTGTCAAAATTGGTGACCGGACAATGCACTATAAACT---GACAAAAATAGTGTC---AGGACAATACACTAACTGACAAaataagcgacaagacgacacggcattaactgacaaaagtgattgcatgaaaatgcacacactgacatgactggtggcaggacaacaacattattggcaggacaaggcacgagccatctaaattggtgtcaggacaagacactaatcatcacactaagtgacagagcgacaaggcactaactaacaaatctgatcgtaggaaaaggcactaacttacaaaattggtagcaggataacaaaattagtggcaggaaaatgcaattactgacaacattggtgacaggacaaggtactgactaaatcggtggcaggacaaagcactaactgtcaaaattggtgaccggacaatgcactataaactgacaaaaatagtgtcaggacaatacactaactgacaaa
gi|8 : taactaaccaacaaaactgga-TGACAGAACAGTATCATTGG---------TGACAGGACAAGGCACTGACTGTCAAAATTGGTGACAGGACAATAACAT-TTGTGACAGGACAAGGCACTGACTGTCAACATTGTTGGCAGGACAA-----TAAC--------ATTATTGACAA---GAC-AAGGCACTGATTGTC--AAAATTGGCA--GCAGGACAA---------TTACA---TTGTTGACAGAACAATGCACTTTCTGACAAAAGCGGTGGCATGA-CAAA----GCACTTACTGACAAGACAAAATTGGTGACAG--------AA--CAGTAAC-------ATTGGATGAC---AGGACAAGGCACTAACTGTCAAAAATAGTGACAGGACAAAGCAAT---GACT---GTAAAAATTGGTGAC---AGGACAA-----TAAC-------ATTGGTAACAGGAAAAG
13 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): GGTGATTGTAGTAGTAGTGGTAGAACCCCCTCTTGTAAATTGATAACCTGACAAATCATGCGATTAAAATTCAAAAATAATAAATAAAATCGACCCTTATACTCATTTCAGTTGAATTGATGACAAGCAGTCTAGTACTTGTCCTCGTGCTTGAAATTATTATTTGGATTTTGAAGGAAGTAGTCACTCTATAGTAATTCATATCAAATGTGCCACACTTCTTATATCAGTACCACGATTCCAAGAAAGCAGAAATAATAATAACACTGGAGAGGCACAATTCTGTATTAAATCTGACAACGGACAATCAAAACATAATATGTATCACTTGTTTTCAACGGAACAGTTGTGTAACACTTGACGATTCTGTTATTCCCAGACTGGTTACAACATCCCATTTGATGACATTGAACTTTGAACCGACTAGACAAGATAC
Unaligned ( gi|6 ): ACCCCCTCTTGTAAATTGATAACCTGACAAATAAAGCGATTAAAAATAAAAAAAATAATAAATAAAAGCGACCCTAATACTCATTTCAGTTAAATTGATGACAAGCAGTCAAGGACTTGTTCTCGTGCTTGAAAATATTATTTGGATTTAGAAGGAAGTAGTCACTCTATAGTAATTCATATGAAACGTGCAACACCCCTCATATCAGTTCCGTGATTCCAAGAAAGCCGAAATAATAATAACACTGGAGAGGCAAAATTCTTACTGTCATAAATCTGACAACGGACAATCAAAACATAATATATATCACTTGTTTTTTCGACAGAACGGTTGTGTAACATTTGACGATTCTGTAATTCCCAGACTGGTTACATCCCATTTGATGACATGTAACTTTGAACCGACTAGACAAGATAACTTATTACAAAGACAAAA
Unaligned ( gi|7 ): GTAAATTATGACCTGACAAATAAAGCGATTAAAATTTCAAAAATAATAAATAAAAGCGACCCTAATACTCATTTCATTTAAACTGATGACAAGCAATCTTGGACTTGATCTCGTGCTCGAAAATATTATTTGGATTTAGATGGAAGTAGTCACTCTATAGAAATTCATATTAAACGTGCAACACTCCTCATATAAGTTCCATTATTCCAAGAAAGCAGAAATAAAAATAACACTGGCGAGGCAAAATTCTAACTGTCTTAAATCTGACAACGGACAATCAAAACATAATATGTATCACATGGTTGGGTAACACTTGACGCTTCTGTTATTCCCAGACTGATTACATCCAAGTTGATGAAATGTAACTTTGAACCGACTAGACAAGATAACTTATTGCAAAGACAAAATGT
Unaligned ( gi|9 ): ACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCACCATATACAATAATGTTTAAATTTTAAATTAATTATATACTATCTGTTATTTCTGGAAAACCAGACTTATTTATCAA
Unaligned ( gi|10 ): TAAATTTATTATGCACTATACGTTATTTCTAGTAAACCAGATTAATTTATTTAATCAACATGTGACATATTAAATACTATTACCCATTTTGAGCAGTCAACTATGCATTTTGGTTAAATAGTATGATCTATTATCAGCTGGTCTTTGGCGATTATACAATAGTATTTTGCATGAGATATAATAGCTATTATTTAATAACTTGCCAGAAAACTTTATCAGAATAT
Unaligned ( gi|14 ): CTGGAAAGACAAGTTTTATGACAACTGGCAATCAAAGCATTTTAGATGCGAAGCTTGTGTGCCATATGTCCATTCTGTTATTTCCAGACTGGTTACCTGTCATCAGAGGACATACAACTAGACAAGATATATTG
Unaligned ( gi|15 ): AACGGTCATAAATCTGACAACGGGCAATTAATGACGCAAGGGTCCATTCTGTTTTTTTCAGCCGGGTTACATATCATTTGAGGACATATAACTTTGTACCAGCGTTACAAGATAACTGAATACATAGACAAAA
Unaligned ( gi|16 ): TAATATTTGTTTCAGTTAAATTGATGACTAACATTCCAAGAATTTGTTCTAATGCTTGAAAATTATATTTAGATTTAGAAGGTTGTTGTAACTCTGACGTGCATATAGAACGGGCAACAATTTTGTATATA
Unaligned ( gi|18 ): ATATGATAGACCCTTCTTGTAAATTGCTGACCCCACAAACAAGCGATTAAAATTTAAAAAATAAAAAATAAAAACAAACCTGATACTTATTTCAGTTAAATTGATGACCAAAATT
Unaligned ( gi|23 ): TTCACGATTCCAAAAAATCAGAAATAATAACAACACGAAAGACAAAATTCCAATGGACTTGAATTTGACAACGGACAAAC
Unaligned ( gi|24 ): TATCTACTGCAGCGGTTGAAATACGAAAGACTGTTTCCCGCTGGAGCAGTTAACAGTACATTTCAATGAAATAGTAA
Unaligned ( gi|25 ): AATGCTTGTGAAGATATTATTTGAATTTTGAAAGTTATTGTAACTCTGCCCTCCATATGAAACATA
Unaligned ( gi|27 ): TCATGATTCCAGGGAATCAGAAATGGTAACAACATGAATGCACAATATCCATA