lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1 1111 33333333333 5555555 2222222 11
lowQualScore : 3 22 5 3 6 000 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1 5 3 99 0 6666 55555555555 4 5 7 0 2222222 6666666 55 2
lowQualScore : . .. . . . ... .................................................................................................................. . . . .. . .... ........... . . . . ....... ....... .. .
lowQualScore : 3 00 0 7 0 000 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 7 9 88 9 2222 11111111111 0 1 5 4 0000000 0000000 44 8
consensus : NATGAAATTAAAATATTATTTTACACGAAACAAAGCGTTACTTTTTATTTACTACACATATAAATTAAGTTT---GATAATATGTGGATATCATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATTGTGGTCATTGGACGGCAGTGCCTTGGATCACTCGACCAAGGAGGACCCAATTTATTGA-TAAAATAGTGGACATTGGAATAATGTAATTCCATTGAATTGAACT----AAAAA----GA---TCATTGAAACTATGATGATANAGTTTGTTTATACTATTCTTTGTAAATGGGATAGATGCTTTCCAACTG-CGA-TGTCGAGTA-------AGNNAATTGAGTATCGAGTAAGGA
Reference ( gi|1 ) : CATGAAATTAAAATATTATTTTACACGAAGCAAAGATTTACTTTTTATTCACTACACATATGAGTTAAGTTT---GATAATATGTGGATATCATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATTGTGGTCATTGGACGGCAGTGCCTTGGATCACTCGACCAAGGAGGACCAAATTTATTGA-TAAAATAGTGGACATTGGAATAATGTCGTTCCATTAAATTGAACT----AAACA----TA---TCATTGAAACTATAATGATAAAGTTTGTTTATACTATTTTTTGTAAATGGGATAGATGCTTTCTAAC-------TGTCGAGTA-------AGCAAACCGAGTATCGAGTAAGGA
gi|3 : ATGAAATTAAAATATTATTTTACATGAAACAAAGCTTTACTTTTTATTAACTACACATATAAATTAAGTTT---GATAATATGTGGATATCATT
gi|5 : ATGAAATTAAAATATTATTTTACGCGAAACAAAGTGTTACTTTTTATTTACTACACATATAAATTAAATTT---CATAATATGCGGATATCATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATTGTGGTCATTGGACGGCAGTGCCTTGGATCACTCGACCAAGGAGGACCCAATTTATTGA-TAGAATAGTGGACATTGGAATTATGTCGTTCCATTAAATTGAACT----AAAAA----GA---TCATTGAAACTATAATGATAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacattgtggtcattggacggcagtgccttggattactcgaccaaggaggacccaatttattgataaaatagtggacattggaataatgtctttccattaaattgatctaaagagatcattgaaacattaatgataaagtttgtttatactattctttgtaaatgggatagatgctttctaactgtcgagtaagcaaactgagtatcgagtaagg
gi|2 : AAATTAAAATATTATTTTACACGAAACAATGCGTTACTTTTTATTTACTACACATATAAATCAAGTTT---GGTAATATGTGGATATCATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTGTGTTCATTGGACGGCAGTGCCTTGGATCACTCGACCAAGGAGGACCCAATTTATTGA-TAA--TTGTGGACATTGTAATAATGTCGTTCCATTAAATTGAACT----AAAAA----GA---TCATTGAAACCATAATGATAAAGTTTGTTTATACTATTCTTTTTAAATGGGATAGATGCTTTCTAAC-------TGTCGAGTA-------AGCAAACTGAGTATCGAGT
gi|15 : AATTAAAATATCATTTTACATGAAGCAAAGATTTACTTTTTATTTACTACAGATATGAATTAAGTTT---AATAATATGAGG
gi|16 : gATCTTATTTTACATGAAAGAAAGAGTTAGTTTTTATTTACTACAAATATAAATTAAGTTTATGGATAATA
gi|17 : AAACAAAGCGTTGCTTTTTATTTACAACACATATAAATTAAGTTT---GATAATATGTGGATATCA
gi|4 : TTTTTTTTTAATTC--TATACATATAAATTAAGTTT---GATAATATGTGGATATCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATTGTGGTCATTGGACGGCAATGCCTTGGATCACTCGACCAAGGAGGACCCAATTTATTGA-TAAAAGAGTTGACATTGGAATAATGTCGTTCCATTAAATTGAACT----AAAAA----TA---TCATTGAAACTATAATGATTAAGTTTGTTTATACTATTCTTTGTAA-TGGGATAGATGCTTT
gi|3 : ACATTGTGGTCATTGGACGGCAGTGCCTTGGATTACTCGACCAAGGAGGACCCAATTTATTGA-TAAAATAGTGGACATTGGAATAATGTCTTTCCATTAAATTGATCT----AAAGA----GA---TCATTGAAACATTAATGATAAAGTTTGTTTATACTATTCTTTGTAAATGGGATAGATGCTTTCTAAC-------TGTCGAGTA-------AGCAAACTGAGTATCGAGTAAGG
gi|6 : atgaaattaaaatattattttacatgaaacaaagctttactttttattaactacacatataaattaagtttgataatatgtggatatcattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTCGACCAAGGAGGAC-ACATTGATTAAACAAAAT---GGAAAACGGAATAATGTAATTCCATAGAATTGAACT----GAAAA----GAAGATCATTGAAACTATGATGATATAGTTTGTTTATACTAGTCTTTGTAAATGGGATAGATGCTTTGTAACTGCCGAATGTCGAGTA-------AG--AGTCGAGTAT
gi|8 : CAACCAAGGAGGACCCAATTTATTGA-TAAAATAGTGGACATTTGAATAATGCCTTTCCATTAAATTGAACT----AAAAA----GA---TCATTGAAACTATAATGATAAAGTTTATTTATACTATTCTTTGTGAAAGGGGTAGATGCTTTCgcatgtcgatcaagaaa
gi|9 : AATATATTGA-TAAACCGTTGAAAATTGGA-TAACGTATTTCAATTGAATTGATCTGG--AAAAA----AA---ACATTGAAAAGACGGTAACATAGTTTGTTTATATGA-TCTTTGTAAATGGGATAaa
gi|7 : TGGAATAATGTAATTCCATTGAATTGAACT----GAAAA----GAAGATCATTGAAACTATGATGATATAATTTGTTTATACTAGTCTTTGTAAATGGGATAGATGCTTTCCAAC-------TGTCGAGTGTCGAGTTAGACAATTGAGTGTCAAGTAAG
gi|10 : aaTGGAATAATGTAATTCCATTCAATTGAACTGAAAAAAAA----GA---TCATTGAAACTATAATGATAAAGTTTGTTTATACTAGTCTTTGTAAATGGGATATATGCTTTCCA
gi|11 : aaTGGAATACTGTAACTCCTTTGAATTGAACT----GA-CAGGAATA---TCATTGAATCTATGATGATAAAGTGTGTTTATACTAGTCTTTGTAAATAGGATAGATGCTT
gi|13 : TGGAATATTGTAATTCCATTGAATTGAACT----GAA-----------------AAGCTATGATGATATAGTTTGTTTAAACTATTGTTTGTAAATGGGATAGATGCTTTCCAA
gi|12 : aTGGAATATTGTAATTCCATTGAATTGAACT----GAA-----------------AAGCTATGATGATATAGTTTGTTTAAACTATTGTTTGTAAATGGGATAGATGCTTTCCAA
gi|18 : aGGAATTATGTAATTCCATTGAATTAAACTGAA-AAGAA----GA---TCATTGAAACTATGA
gi|14 : TGATATAGTTTGTTTGTACTAGTCTTTGTAAATGGGATAGATACTTTCCAACTGTCGAGTGTCGAGTA-------AGACAATTGAGTATCAAGTAAGGA
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|19 ): TAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|20 ): ACAATATATTGATAAACCGTTGAAAATTGGATAACGTA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111 111 555555555 11
lowQualScore : 33 888 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 66 22 5555 555 1 4 666666666 00
lowQualScore : .. ... .................................................................................................................. .. .. .... ... . . ......... ..
lowQualScore : 77 888 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 99 11 0000 000 0 0 333333333 88
consensus : NATGAAATTAAAATATTATTTTACACGAAACAAAGCGTTACTTTTTATTTACTACACATATAAATTAAGTTT---GATAATATGTGGATATCATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATTGTGGTCATTGGACGGCAGTGCCTTGGATCACTCGACCAAGGAGGACCCAATTTATTGATAAAATAG--TGGACATTGGAATAATGTAATTCCATTGAATTGAACT----AAAAAGA---TCATTGAAACTATGATGATANAGTTTGTTTATACTATTCTTTGTAAATGGGATAGATGCTTTCCAACTG-C--GA-TGTCGAGTAAGCAAACCGAGTATCGAGTAAGGA
Reference ( family-5016 ) : NATGAAATTAAAATATTATTTTACACGAAACAAAGCGTTACTTTTTATTTACTACACATATAAATTAAGTTT---GATAATATGTGGATATCATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATTGTGGTCATTGGACGGCAGTGCCTTGGATCACTCGACCAAGGAGGACCCAATTTATTGATAAAATAG--TGGACATTGGAATAATGTAATTCCATTGAATTGAACT----AAAAAGA---TCATTGAAACTATGATGATANAGTTTGTTTATACTATTCTTTGTAAATGGGATAGATGCTTTCCAACTG-C--GA-TGTCGAGTAAGNNAATTGAGTATCGAGTAAGGA
gi|1 : ATGAAATTAAAATATTATTTTACACGAAGCAAAGATTTACTTTTTATTCACTACACATATGAGTTAAGTTT---GATAATATGTGGATATCATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATTGTGGTCATTGGACGGCAGTGCCTTGGATCACTCGACCAAGGAGGACCAAATTTATTGATAAAATAG--TGGACATTGGAATAATGTCGTTCCATTAAATTGAACT----AAACATA---TCATTGAAACTATAATGATAAAGTTTGTTTATACTATTTTTTGTAAATGGGATAGATGCTTTCTAACTG---------TCGAGTAAGCAAACCGAGTATCGAGTAAGGA
gi|10 : cTGGAATAATGTAATTCCATTCAATTGAACTGAAAAAAAAGA---TCATTGAAACTATAATGATAAAGTTTGTTTATACTAGTCTTTGTAAATGGGATATATGCTTTCCA
gi|11 : aaTGGAATACTGTAACTCCTTTGAATTGAACT----GACAGGAATATCATTGAATCTATGATGATAAAGTGTGTTTATACTAGTCTTTGTAAATAGGATAGATGCTT
gi|12 : TGGAATATTGTAATTCCATTGAATTGAACT----GAAAAG-------------CTATGATGATATAGTTTGTTTAAACTATTGTTTGTAAATGGGATAGATGCTTTCCAA
gi|13 : aTGGAATATTGTAATTCCATTGAATTGAACT----GAAAAG-------------CTATGATGATATAGTTTGTTTAAACTATTGTTTGTAAATGGGATAGATGCTTTCCAA
gi|14 : aTGATATAGTTTGTTTGTACTAGTCTTTGTAAATGGGATAGATACTTTCCAACTGTC--GAGTGTCGAGTAAGACAATTGAGTATCAAGTAAGGA
gi|15 : AATTAAAATATCATTTTACATGAAGCAAAGATTTACTTTTTATTTACTACAGATATGAATTAAGTTT---AATAATATGAGG
gi|16 : gATCTTATTTTACATGAAAGAAAGAGTTAGTTTTTATTTACTACAAATATAAATTAAGTTTATGGATAATA
gi|17 : AAACAAAGCGTTGCTTTTTATTTACAACACATATAAATTAAGTTT---GATAATATGTGGATATCA
gi|18 : GGAATTATGTAATTCCATTGAATTAAACTGAA-AAGAAGA---TCATTGAAACTATGA
gi|2 : AAATTAAAATATTATTTTACACGAAACAATGCGTTACTTTTTATTTACTACACATATAAATCAAGTTT---GGTAATATGTGGATATCATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTGTGTTCATTGGACGGCAGTGCCTTGGATCACTCGACCAAGGAGGACCCAATTTATTGATAA--TTG--TGGACATTGTAATAATGTCGTTCCATTAAATTGAACT----AAAAAGA---TCATTGAAACCATAATGATAAAGTTTGTTTATACTATTCTTTTTAAATGGGATAGATGCTTTCTAAC---------TGTCGAGTAAGCAAACTGAGTATCGAGT
gi|3 : ATGAAATTAAAATATTATTTTACATGAAACAAAGCTTTACTTTTTATTAACTACACATATAAATTAAGTTT---GATAATATGTGGATATCATT
gi|3 : ACATTGTGGTCATTGGACGGCAGTGCCTTGGATTACTCGACCAAGGAGGACCCAATTTATTGATAAAATAG--TGGACATTGGAATAATGTCTTTCCATTAAATTGATCT----AAAGAGA---TCATTGAAACATTAATGATAAAGTTTGTTTATACTATTCTTTGTAAATGGGATAGATGCTTTCTAAC---------TGTCGAGTAAGCAAACTGAGTATCGAGTAAGGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacattgtggtcattggacggcagtgccttggattactcgaccaaggaggacccaatttattgataaaatagtggacattggaataatgtctttccattaaattgatctaaagagatcattgaaacattaatgataaagtttgtttatactattctttgtaaatgggatagatgctttctaactgtcgagtaagcaaactgagtatcgagtaagg
gi|4 : atgaaattaaaatattattttacatgaaacaaagctttactttttattaactacacatataaattaagtttgataatatgtggatatcattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTTTAATT-CTATACATATAAATTAAGTTT---GATAATATGTGGATATCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATTGTGGTCATTGGACGGCAATGCCTTGGATCACTCGACCAAGGAGGACCCAATTTATTGATAAAAGAG--TTGACATTGGAATAATGTCGTTCCATTAAATTGAACT----AAAAATA---TCATTGAAACTATAATGATTAAGTTTGTTTATACTATTCTTTGTAA-TGGGATAGATGCTTT
gi|5 : ttttATGAAATTAAAATATTATTTTACGCGAAACAAAGTGTTACTTTTTATTTACTACACATATAAATTAAATTT---CATAATATGCGGATATCATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATTGTGGTCATTGGACGGCAGTGCCTTGGATCACTCGACCAAGGAGGACCCAATTTATTGATAGAATAG--TGGACATTGGAATTATGTCGTTCCATTAAATTGAACT----AAAAAGA---TCATTGAAACTATAATGATA
gi|6 : CTCGACCAAGGAGGACACA-----TTGATTAAACAAAATGGAAAACGGAATAATGTAATTCCATAGAATTGAACT----GAAAAGAAGATCATTGAAACTATGATGATATAGTTTGTTTATACTAGTCTTTGTAAATGGGATAGATGCTTTGTAACTG-CCGAA-TGTCGAGTAAG--AGTCGAGTAT
gi|7 : TGGAATAATGTAATTCCATTGAATTGAACT----GAAAAGAAGATCATTGAAACTATGATGATATAATTTGTTTATACTAGTCTTTGTAAATGGGATAGATGCTTTCCAACTGTC--GAGTGTCGAGTTAGACAATTGAGTGTCAAGTAAGgcatgtcgatcaagaaa
gi|8 : aaCAACCAAGGAGGACCCAATTTATTGATAAAATAG--TGGACATTTGAATAATGCCTTTCCATTAAATTGAACT----AAAAAGA---TCATTGAAACTATAATGATAAAGTTTATTTATACTATTCTTTGTGAAAGGGGTAGATGCTTTC
gi|9 : AATATATTGATAAACCGT--TGAAAATTGGA-TAACGTATTTCAATTGAATTGATCTGG--AAAAAAA---ACATTGAAAAGACGGTAACATAGTTTGTTTATATGA-TCTTTGTAAATGGGATAaa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|20 ): ACAATATATTGATAAACCGTTGAAAATTGGATAACGTA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111 111 555555555
lowQualScore : 33 888 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 66 22 5555 555 1 4 666666666 99 0
lowQualScore : .. ... .................................................................................................................. .. .. .... ... . . ......... .. .
lowQualScore : 77 888 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 99 11 0000 000 0 0 333333333 77 7
consensus : NATGAAATTAAAATATTATTTTACACGAAACAAAGCGTTACTTTTTATTTACTACACATATAAATTAAGTTT---GATAATATGTGGATATCATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATTGTGGTCATTGGACGGCAGTGCCTTGGATCACTCGACCAAGGAGGACCCAATTTATTGATAAAATAG--TGGACATTGGAATAATGTAATTCCATTGAATTGAACT----AAAAAGA---TCATTGAAACTATGATGATANAGTTTGTTTATACTATTCTTTGTAAATGGGATAGATGCTTTCCAACTG-C--GA-TGTCGAGTAAGCAAACCGAGTATCGAGTAAGGA
Reference ( family-5016 ) : NATGAAATTAAAATATTATTTTACACGAAACAAAGCGTTACTTTTTATTTACTACACATATAAATTAAGTTT---GATAATATGTGGATATCATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATTGTGGTCATTGGACGGCAGTGCCTTGGATCACTCGACCAAGGAGGACCCAATTTATTGATAAAATAG--TGGACATTGGAATAATGTAATTCCATTGAATTGAACT----AAAAAGA---TCATTGAAACTATGATGATANAGTTTGTTTATACTATTCTTTGTAAATGGGATAGATGCTTTCCAACTG-C--GA-TGTCGAGTAAGCAAACCGAGTATCGAGTAAGGA
gi|1 : ATGAAATTAAAATATTATTTTACACGAAGCAAAGATTTACTTTTTATTCACTACACATATGAGTTAAGTTT---GATAATATGTGGATATCATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATTGTGGTCATTGGACGGCAGTGCCTTGGATCACTCGACCAAGGAGGACCAAATTTATTGATAAAATAG--TGGACATTGGAATAATGTCGTTCCATTAAATTGAACT----AAACATA---TCATTGAAACTATAATGATAAAGTTTGTTTATACTATTTTTTGTAAATGGGATAGATGCTTTCTAACTG---------TCGAGTAAGCAAACCGAGTATCGAGTAAGGA
gi|10 : cTGGAATAATGTAATTCCATTCAATTGAACTGAAAAAAAAGA---TCATTGAAACTATAATGATAAAGTTTGTTTATACTAGTCTTTGTAAATGGGATATATGCTTTCCA
gi|11 : aaTGGAATACTGTAACTCCTTTGAATTGAACT----GACAGGAATATCATTGAATCTATGATGATAAAGTGTGTTTATACTAGTCTTTGTAAATAGGATAGATGCTT
gi|12 : TGGAATATTGTAATTCCATTGAATTGAACT----GAAAAG-------------CTATGATGATATAGTTTGTTTAAACTATTGTTTGTAAATGGGATAGATGCTTTCCAA
gi|13 : aTGGAATATTGTAATTCCATTGAATTGAACT----GAAAAG-------------CTATGATGATATAGTTTGTTTAAACTATTGTTTGTAAATGGGATAGATGCTTTCCAA
gi|14 : aTGATATAGTTTGTTTGTACTAGTCTTTGTAAATGGGATAGATACTTTCCAACTGTC--GAGTGTCGAGTAAGACAATTGAGTATCAAGTAAGGA
gi|15 : AATTAAAATATCATTTTACATGAAGCAAAGATTTACTTTTTATTTACTACAGATATGAATTAAGTTT---AATAATATGAGG
gi|16 : gATCTTATTTTACATGAAAGAAAGAGTTAGTTTTTATTTACTACAAATATAAATTAAGTTTATGGATAATA
gi|17 : AAACAAAGCGTTGCTTTTTATTTACAACACATATAAATTAAGTTT---GATAATATGTGGATATCA
gi|18 : GGAATTATGTAATTCCATTGAATTAAACTGAA-AAGAAGA---TCATTGAAACTATGA
gi|2 : AAATTAAAATATTATTTTACACGAAACAATGCGTTACTTTTTATTTACTACACATATAAATCAAGTTT---GGTAATATGTGGATATCATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTGTGTTCATTGGACGGCAGTGCCTTGGATCACTCGACCAAGGAGGACCCAATTTATTGATAA--TTG--TGGACATTGTAATAATGTCGTTCCATTAAATTGAACT----AAAAAGA---TCATTGAAACCATAATGATAAAGTTTGTTTATACTATTCTTTTTAAATGGGATAGATGCTTTCTAAC---------TGTCGAGTAAGCAAACTGAGTATCGAGT
gi|3 : ATGAAATTAAAATATTATTTTACATGAAACAAAGCTTTACTTTTTATTAACTACACATATAAATTAAGTTT---GATAATATGTGGATATCATT
gi|3 : ACATTGTGGTCATTGGACGGCAGTGCCTTGGATTACTCGACCAAGGAGGACCCAATTTATTGATAAAATAG--TGGACATTGGAATAATGTCTTTCCATTAAATTGATCT----AAAGAGA---TCATTGAAACATTAATGATAAAGTTTGTTTATACTATTCTTTGTAAATGGGATAGATGCTTTCTAAC---------TGTCGAGTAAGCAAACTGAGTATCGAGTAAGGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacattgtggtcattggacggcagtgccttggattactcgaccaaggaggacccaatttattgataaaatagtggacattggaataatgtctttccattaaattgatctaaagagatcattgaaacattaatgataaagtttgtttatactattctttgtaaatgggatagatgctttctaactgtcgagtaagcaaactgagtatcgagtaagg
gi|4 : atgaaattaaaatattattttacatgaaacaaagctttactttttattaactacacatataaattaagtttgataatatgtggatatcattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTTTAATT-CTATACATATAAATTAAGTTT---GATAATATGTGGATATCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATTGTGGTCATTGGACGGCAATGCCTTGGATCACTCGACCAAGGAGGACCCAATTTATTGATAAAAGAG--TTGACATTGGAATAATGTCGTTCCATTAAATTGAACT----AAAAATA---TCATTGAAACTATAATGATTAAGTTTGTTTATACTATTCTTTGTAA-TGGGATAGATGCTTT
gi|5 : ttttATGAAATTAAAATATTATTTTACGCGAAACAAAGTGTTACTTTTTATTTACTACACATATAAATTAAATTT---CATAATATGCGGATATCATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATTGTGGTCATTGGACGGCAGTGCCTTGGATCACTCGACCAAGGAGGACCCAATTTATTGATAGAATAG--TGGACATTGGAATTATGTCGTTCCATTAAATTGAACT----AAAAAGA---TCATTGAAACTATAATGATA
gi|6 : CTCGACCAAGGAGGACACA-----TTGATTAAACAAAATGGAAAACGGAATAATGTAATTCCATAGAATTGAACT----GAAAAGAAGATCATTGAAACTATGATGATATAGTTTGTTTATACTAGTCTTTGTAAATGGGATAGATGCTTTGTAACTG-CCGAA-TGTCGAGTAAG--AGTCGAGTAT
gi|7 : TGGAATAATGTAATTCCATTGAATTGAACT----GAAAAGAAGATCATTGAAACTATGATGATATAATTTGTTTATACTAGTCTTTGTAAATGGGATAGATGCTTTCCAACTGTC--GAGTGTCGAGTTAGACAATTGAGTGTCAAGTAAGgcatgtcgatcaagaaa
gi|8 : aaCAACCAAGGAGGACCCAATTTATTGATAAAATAG--TGGACATTTGAATAATGCCTTTCCATTAAATTGAACT----AAAAAGA---TCATTGAAACTATAATGATAAAGTTTATTTATACTATTCTTTGTGAAAGGGGTAGATGCTTTC
gi|9 : AATATATTGATAAACCGT--TGAAAATTGGA-TAACGTATTTCAATTGAATTGATCTGG--AAAAAAA---ACATTGAAAAGACGGTAACATAGTTTGTTTATATGA-TCTTTGTAAATGGGATAaa
blockSeqs : AT ATG NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN AA AA GAAA ATA A G TGTCGAG AC
blockSeqs : AG . NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN . AA GAA AGA A G TGCCGAA CA
blockSeqs : CG . NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN . AA GG AGA T T TGTCGAG CA
blockSeqs : CG . . AA . . T T . AC
blockSeqs : CT . . AA . . T G . .
blockSeqs : TG . . CG . . A T
blockSeqs : . . CT . . A T
blockSeqs : CG . . A T
blockSeqs : CG . . T G
blockSeqs : AA . . T G
blockSeqs : AA . . A T
blockSeqs : CT . . T .
blockSeqs : AT . .
blockSeqCons : TGTCGAG**
originalCons : NATGAAATTAAAATATTATTTTACACGAAACAAAGCGTTACTTTTTATTTACTACACATATAAATTAAGTTT---GATAATATGTGGATATCATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATTGTGGTCATTGGACGGCAGTGCCTTGGATCACTCGACCAAGGAGGACCCAATTTATTGATAAAATAG--TGGACATTGGAATAATGTAATTCCATTGAATTGAACT----AAAAAGA---TCATTGAAACTATGATGATANAGTTTGTTTATACTATTCTTTGTAAATGGGATAGATGCTTTCCAACTG-C--GA-TGTCGAGTAAGCAAACCGAGTATCGAGTAAGGA
finalCons : NATGAAATTAAAATATTATTTTACACGAAACAAAGCGTTACTTTTTATTTACTACACATATAAATTAAGTTT---GATAATATGTGGATATCATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATTGTGGTCATTGGACGGCAGTGCCTTGGATCACTCGACCAAGGAGGACCCAATTTATTGATAAAATAG--TGGACATTGGAATAATGTAATTCCATTGAATTGAACT----AAAAAGA---TCATTGAAACTATGATGATANAGTTTGTTTATACTATTCTTTGTAAATGGGATAGATGCTTTCCAACTGTCGAG--TGTCGAGTAAGCAAACCGAGTATCGAGTAAGGA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|20 ): ACAATATATTGATAAACCGTTGAAAATTGGATAACGTA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111 111 2222222
lowQualScore : 33 888 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 66 22 5555 555 1 4 0000000 99 0
lowQualScore : .. ... .................................................................................................................. .. .. .... ... . . ....... .. .
lowQualScore : 77 888 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 99 11 0000 000 0 0 3333333 77 7
consensus : NATGAAATTAAAATATTATTTTACACGAAACAAAGCGTTACTTTTTATTTACTACACATATAAATTAAGTTT---GATAATATGTGGATATCATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATTGTGGTCATTGGACGGCAGTGCCTTGGATCACTCGACCAAGGAGGACCCAATTTATTGATAAAATAG--TGGACATTGGAATAATGTAATTCCATTGAATTGAACT----AAAAAGA---TCATTGAAACTATGATGATANAGTTTGTTTATACTATTCTTTGTAAATGGGATAGATGCTTTCCAACTGTCGAGTGTCGAGTAAGCAAACCGAGTATCGAGTAAGGA
Reference ( family-5016 ) : NATGAAATTAAAATATTATTTTACACGAAACAAAGCGTTACTTTTTATTTACTACACATATAAATTAAGTTT---GATAATATGTGGATATCATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATTGTGGTCATTGGACGGCAGTGCCTTGGATCACTCGACCAAGGAGGACCCAATTTATTGATAAAATAG--TGGACATTGGAATAATGTAATTCCATTGAATTGAACT----AAAAAGA---TCATTGAAACTATGATGATANAGTTTGTTTATACTATTCTTTGTAAATGGGATAGATGCTTTCCAACTGTCGAGTGTCGAGTAAGCAAACCGAGTATCGAGTAAGGA
gi|1 : ATGAAATTAAAATATTATTTTACACGAAGCAAAGATTTACTTTTTATTCACTACACATATGAGTTAAGTTT---GATAATATGTGGATATCATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATTGTGGTCATTGGACGGCAGTGCCTTGGATCACTCGACCAAGGAGGACCAAATTTATTGATAAAATAG--TGGACATTGGAATAATGTCGTTCCATTAAATTGAACT----AAACATA---TCATTGAAACTATAATGATAAAGTTTGTTTATACTATTTTTTGTAAATGGGATAGATGCTTTCTAACTGTC-------GAGTAAGCAAACCGAGTATCGAGTAAGGA
gi|10 : cTGGAATAATGTAATTCCATTCAATTGAACTGAAAAAAAAGA---TCATTGAAACTATAATGATAAAGTTTGTTTATACTAGTCTTTGTAAATGGGATATATGCTTTCCA
gi|11 : aaTGGAATACTGTAACTCCTTTGAATTGAACT----GACAGGAATATCATTGAATCTATGATGATAAAGTGTGTTTATACTAGTCTTTGTAAATAGGATAGATGCTT
gi|12 : TGGAATATTGTAATTCCATTGAATTGAACT----GAAAAG-------------CTATGATGATATAGTTTGTTTAAACTATTGTTTGTAAATGGGATAGATGCTTTCCAA
gi|13 : aTGGAATATTGTAATTCCATTGAATTGAACT----GAAAAG-------------CTATGATGATATAGTTTGTTTAAACTATTGTTTGTAAATGGGATAGATGCTTTCCAA
gi|14 : aTGATATAGTTTGTTTGTACTAGTCTTTGTAAATGGGATAGATACTTTCCAACTGTCGAGTGTCGAGTAAGACAATTGAGTATCAAGTAAGGA
gi|15 : AATTAAAATATCATTTTACATGAAGCAAAGATTTACTTTTTATTTACTACAGATATGAATTAAGTTT---AATAATATGAGG
gi|16 : gATCTTATTTTACATGAAAGAAAGAGTTAGTTTTTATTTACTACAAATATAAATTAAGTTTATGGATAATA
gi|17 : AAACAAAGCGTTGCTTTTTATTTACAACACATATAAATTAAGTTT---GATAATATGTGGATATCA
gi|18 : GGAATTATGTAATTCCATTGAATTAAACTGAA-AAGAAGA---TCATTGAAACTATGA
gi|2 : AAATTAAAATATTATTTTACACGAAACAATGCGTTACTTTTTATTTACTACACATATAAATCAAGTTT---GGTAATATGTGGATATCATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTGTGTTCATTGGACGGCAGTGCCTTGGATCACTCGACCAAGGAGGACCCAATTTATTGATAA--TTG--TGGACATTGTAATAATGTCGTTCCATTAAATTGAACT----AAAAAGA---TCATTGAAACCATAATGATAAAGTTTGTTTATACTATTCTTTTTAAATGGGATAGATGCTTTCTAAC-------TGTCGAGTAAGCAAACTGAGTATCGAGT
gi|3 : ATGAAATTAAAATATTATTTTACATGAAACAAAGCTTTACTTTTTATTAACTACACATATAAATTAAGTTT---GATAATATGTGGATATCATT
gi|3 : ACATTGTGGTCATTGGACGGCAGTGCCTTGGATTACTCGACCAAGGAGGACCCAATTTATTGATAAAATAG--TGGACATTGGAATAATGTCTTTCCATTAAATTGATCT----AAAGAGA---TCATTGAAACATTAATGATAAAGTTTGTTTATACTATTCTTTGTAAATGGGATAGATGCTTTCTAAC-------TGTCGAGTAAGCAAACTGAGTATCGAGTAAGGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacattgtggtcattggacggcagtgccttggattactcgaccaaggaggacccaatttattgataaaatagtggacattggaataatgtctttccattaaattgatctaaagagatcattgaaacattaatgataaagtttgtttatactattctttgtaaatgggatagatgctttctaactgtcgagtaagcaaactgagtatcgagtaagg
gi|4 : atgaaattaaaatattattttacatgaaacaaagctttactttttattaactacacatataaattaagtttgataatatgtggatatcattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTTTAATT-CTATACATATAAATTAAGTTT---GATAATATGTGGATATCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATTGTGGTCATTGGACGGCAATGCCTTGGATCACTCGACCAAGGAGGACCCAATTTATTGATAAAAGAG--TTGACATTGGAATAATGTCGTTCCATTAAATTGAACT----AAAAATA---TCATTGAAACTATAATGATTAAGTTTGTTTATACTATTCTTTGTAA-TGGGATAGATGCTTT
gi|5 : ttttATGAAATTAAAATATTATTTTACGCGAAACAAAGTGTTACTTTTTATTTACTACACATATAAATTAAATTT---CATAATATGCGGATATCATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATTGTGGTCATTGGACGGCAGTGCCTTGGATCACTCGACCAAGGAGGACCCAATTTATTGATAGAATAG--TGGACATTGGAATTATGTCGTTCCATTAAATTGAACT----AAAAAGA---TCATTGAAACTATAATGATA
gi|6 : CTCGACCAAGGAGGACACA-----TTGATTAAACAAAATGGAAAACGGAATAATGTAATTCCATAGAATTGAACT----GAAAAGAAGATCATTGAAACTATGATGATATAGTTTGTTTATACTAGTCTTTGTAAATGGGATAGATGCTTTGTAACTGCCGAATGTCGAGTAAG--AGTCGAGTAT
gi|7 : TGGAATAATGTAATTCCATTGAATTGAACT----GAAAAGAAGATCATTGAAACTATGATGATATAATTTGTTTATACTAGTCTTTGTAAATGGGATAGATGCTTTCCAACTGTCGAGTGTCGAGTTAGACAATTGAGTGTCAAGTAAGgcatgtcgatcaagaaa
gi|8 : aaCAACCAAGGAGGACCCAATTTATTGATAAAATAG--TGGACATTTGAATAATGCCTTTCCATTAAATTGAACT----AAAAAGA---TCATTGAAACTATAATGATAAAGTTTATTTATACTATTCTTTGTGAAAGGGGTAGATGCTTTC
gi|9 : AATATATTGATAAACCGT--TGAAAATTGGA-TAACGTATTTCAATTGAATTGATCTGG--AAAAAAA---ACATTGAAAAGACGGTAACATAGTTTGTTTATATGA-TCTTTGTAAATGGGATAaa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|20 ): ACAATATATTGATAAACCGTTGAAAATTGGATAACGTA