lowQualScore : 44444444444444 33333333333333333333 3333333333333 111111111
lowQualScore : 4 55555555555555 22 33 44444 22222222222222222222 3 2222222222222 333 44444 44 999999 999999999 22 555 4
lowQualScore : . .............. .. .. ..... .................... . ............. ... ..... .. ...... ......... .. ... .
lowQualScore : 8 33333333333333 66 99 88888 00000000000000000000 8 2222222222222 222 55555 55 111111 777777777 55 222 1
consensus : AGGGGCTAGTNAC------A-------ATATAT--ATTC-TAT-----ATCCCT----TA-TATA---A----TAGTATAATAAAGTCTTTATTATACTAT-----A-------TATA---GGGAT-----ATA-GA------ATAT--------AT--A---TTGTNACTAGCCCCT
Reference ( gi|9 ) : AGGGGCTAGTGAC-----CA-------ATATAT--ATTT-TAT-----ATCCCT---TTA-TATA---A----TAGTATAATAAAGTCTTTATTATACTAT-----T-------TATA---GGGAT-----ATA-AA------ATAC--------AT--A---TTGTCACTAGCCCCT
gi|10 : AGGGAATAGTGAC------A-------ATATAT--ATTC-TAT-----ATCCCT-----G-TATT---A----TAGTATA-----GTCTTTAGTATACTATA----TAA-----TATA---GGGAT-----ATA-GA------ATAT--------AT--A---TTGTCACTAGCCCCT
gi|10 : acAGGGGCTAGTGAC------A-------ATATAT--ATTC-TAT-----ATCCCT---ATATTAT----A----TAGTATACTAAAG-----ACTATACTATA----A-------TACA---GGGAT-----ATA-GA------ATAT--------AT--A---TTGTCACTATTCCCT
gi|12 : acAGGGGCTAGTG-C-----CA-------ATAAAT--ATTT-TAT-----ATCTCT-----A-TATA--------TAGTATAATAAAGTCTTTATAATACTAT-----A-------TAAA---GGGAT-----ATA-AA------CTAT--------AT--
gi|16 : acAGGGGCAAGTGAC------A-------TTACAT--ATTC-TAT-----ATCCCT-----A-TATA--------CAGTATAATAAAGACTTTATTACACTAT-----cc
gi|11 : acAGGGGCTAGT---------------------------TT-TAA-----ATCCCT-----A-TATA---AG---TA-TATAATTAAGTCTTTATTATACTGT-----A-------TATA---GGGAT-----TTA-GAATAT--ATAT--------AT--A---TTGTAACTAGCCCCTac
gi|11 : acAGGGGCTAGTTAC-----AATAT----ATATAT--ATTC-TAA-----ATCCC-----TA-TAT----A----CAGTATAATAAAGACTTAATTATA-TAC-----TTA-----TATA---GGGAT-----TTA-AA-------------------------------ACTAGCCCCTgt
gi|7 : acAGGGGCTTGTTAC------A-------ATATAT--ATTTATATTCTAAATCCCT-----A-TATA--------TAGTATAATCTAGTCTTTATTATACTGT-----A-------TATATTTAGAAT-----ATA-TA------TTAT---------T--A---TTATTACTAGCCCCTgt
gi|7 : AGGGGCTAGTAATAATAATA-------ATATAT--ATTC-TAA-----AT---------A-TATA--------CAGTATAATAAAGACTAGATTATACTAT-----A-------TATA---GGGATTTAGAATATAA------ATAT--------AT--A---TTGTAACAAGCCCCTgtg
gi|21 : AGAGGCTAGTGAC------A-------ATATAT--ATTT-TAT-----ATTCCTATATTA-TATA---gtg
gi|18 : cacAGGGGCTAGTTAC-----AATATAT--ATATAT--ATTC-TAA-----ATCCC-----TA-TAT----A----TAGTTTAATAAAGTCTg
gi|6 : AGGGGCTAGTTAC-----AATATTATTATATAT--ATTC-TAT-----ATACC-----TA-TAT----A----TAGTATAATAAA
gi|5 : agggttcatactgataaagactgataaaattcaagcacttttcaaggtagaaatttttaatttcaagcactaaaatagataaactcgccatacatatttactgtaccttaggagtttttgcacagcaacacgAGGGGCTAGTTAC-----AATATTATTATATAT--ATTC-TAT-----ATCCCT---ATA-CATGTATA----TAGTGTAATAAAG
gi|4 : cagggttcatacagataaggactgataaaattcaagcacttttcaaggtagaaatttttcaatttcaagcacaaaaatagatgagctcgccatacatacttactgtaccttaggagttcctgcacagcgatctgAGGGGCTAGTCAC------A-------TTTTAT--ATCT--AT-----ATCCCT--------------A----TAGTATAATAAA
gi|17 : cacAGGAGCTATTGGC------A-------ATATAT--ATTA-TAT-----ATTCCT---ATA-TATA---GATACTAGTATAATAAcacaagggaactgtcgtaaacttttactgcaacactaactcaactttattatcaaaaaaaaatcgagtctcaattcctgtaaatatacactcctgtgtggatgaaacatttatctatgcaacagtgttttctttagttgtgaagataactgcttgggaaggatat
gi|20 : atAGGGGCTAGTGTT-----AA-------ATATATGCATTT-TAT-----ATCCCttacta
gi|8 : tctttattGGGCTAGTTAC------A-------AGATAT--ACTTCTAT-----ATCCCT---TAA-TACA----------GTATAATACCGACTTTATTATACTAT-----A-------TATA---GGTAT-----ATA-GA------ATAT--------A---A---TTATgtgggat
gi|1 : acaggaactggataatatatGGTTAGTTAC-----AA-------ATATAT--ATTC-TAA-----ATCCC-----TA-TAT----A----TAGTGTAATAAAGtgt
gi|15 : GGCTAGTGAC------A-------ATATAT--ATTT-TTA-----AGCCCT---TTA-T------A----TAGTATAATAAacaagggcactgtcaccaacttttactacagctcaaacccaatgctctaattcaaacaattccatgtcccatccccatatactatacactcgcaaagctgaaacatatttattcaacagtacctaccttttttaaaatctgttttgtatagaataagtaccagtcgtggagacgttgaaaatttttctacattgtagacaagtgtgtcctttcaaaaacagttattttttacagctatacgcaggtattatgaatgtgtcaggataaacagccaccttttacatgtgaaggaacaaaatagcaaatgccatgataaaaagatagtgagacaaacattgtcaaaatttcagatttattcagaacaatttctctgccattttcataacgtcacttgtctgcagctaaaataagaatctgattggtaaaaatctatctatttattttgaacaaatcgtcaattagacaaaaatttgctgaggacttgtgatgaatggaggataccagtcaggcttatctacattggcgaaaaatcaggatattt
gi|19 : aaaGGCTAGTAAC------A-------AT-T-T--ATTC-TAA-----ATCC-----TTA-TATA--------TAGTATAATAAAGTCTgtattgtcactagcccctgtg
gi|8 : gtgcA-------AT-TAT--ATTC-TAT-----ATACCT-----A-TATA--------TAGTATAATAAAGTCGGTATTATACTGTA----T-------TA-A---GGGAT-----ATAGAA------GTAT--------AT--C---TTGTAACTAGCCC
gi|12 : acaggaactggataatatatatATAT--AGTT-TAT-----ATCCCT---TTA-TATA----------GTATTATAAAGACTTTATTATACTAT-----A-------TATA---GAGAT-----ATA-AA------ATAT--------TT--A---TTGGCACTAGCCCCTtgt
gi|16 : ac---A----TAGTGTAATAAAGTCTTTATTATACTGT-----A-------TATA---GGGAT-----ATA-GA------ATAT--------GT--A---ATGTCACTTGCCCCTcc
gi|18 : acAGACTTTATTAAACTAT-----A-------TATA---GGGAT-----TTA-GAATATATATAT--------AT--A---TTGTAACTAGCCCCTac
gi|19 : AGACTTTATTATACTAT-----A-------TATA---AGGAT-----TTA-GA------ATA---------A---A---TTGTTACTAGCC
gi|1 : gtgcGTCTTTATTACACTAT-----A-------TATA---GGGAT-----TTA-GA------ATAT--------AT--AT--TTGTAACTAACC
gi|4 : GTGTTTATTATAC----------------TATA---GGGAT-----AT--AG------ATAT--------AA--A---ATGTGACTAGCCCCTaagggcactgtcaccaacttttactacagctcaaacccaatgctctaattcaaacaattccatgtcccatccccatatactatacactcgcaaagctgaaacatatttattcaacagtacctaccttttttaaaatctgttttgtatagaataagtaccagtcgtggagacgttgaaaatttttctacattgtagacaagtgtgtcctttcaaaaacagttattttttacagctatacgcaggtattatgaatgtgtcaggataaacagccaccttttacatgtgaaggaacaaaatagcaaatgccatgataaaaagatagtgagacaaacattgtcaaaatttcagatttattcagaacaatttctctgccattttcataacgtcacttgtctgcagctaaaataagaatctgattggtaaaaatctatctatttattttgaacaaatcgtcaattagacaaaaatttgctgaggacttgtgatgaatggaggataccagtcaggcttatctacattggcgaaaaatcaggatattt
gi|5 : cacCTTTATTACACTATATACATG------TATA---GGGAT-----ATA-GA------ATATATATAATAAT--A---TTGTAACTAGCCCCTaagggaactgtcgtaaacttttactgcaacactaactcaactttattatcaaaaaaaaatcgagtctcaattcctgtaaatatacactcctgtgtggatgaaacatttatctatgcaacagtgttttctttagttgtgaagataactgcttgggaaggatat
gi|6 : cagggttcatacagataaggactgataaaattcaagcacttttcaaggtagaaatttttcaatttcaagcacaaaaatagatgagctcgccatacatacttactgtaccttaggagttcctgcacagcgatctgTTTATTATACTAT-----A-------TATA---GGTAT-----ATA-GA------ATATATATAATAAT--A---TTGTAACTAGCCCCT
gi|15 : agggttcatactgataaagactgataaaattcaagcacttttcaaggtagaaatttttaatttcaagcactaaaatagataaactcgccatacatatttactgtaccttaggagtttttgcacagcaacacgTTATTATACTAT-----A-------TAAA---GGGCT-----TAA-AA------ATAT--------AT--A---TTGTCACTAGCC
gi|17 : aaaTTATTATACTAG-----TATCTATATATA---GGAAT-----ATA-TA------ATAT--------AT--A---TTGCCAATAGCTCCTgtattgtcactagcccctgtg
gi|22 : atTAT-----A-------CATA---GGTAT-----TTA-GA------ATAC--------ATATA---TTGTAACTAGCTCCTttacta
gi|20 : aaT-----T-------TATT---GGGAT-----ATA-AA------ATGC--------AT--ATATTTAACACTAGCCCCTct
gi|21 : tc-------TATA---GGAAT-----ATA-AA------ATAT--------AT--A---TTGTCACTAGCCTCTgtgggat
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|2 ): TTGTCTGCAGCTAAAAGAAAGAATATGATTGGTCGAAAATCAAGTTTTTATTTTTCGACAAATCGTCAATTAGACAAATATTTACTGCGGATATCGGATAGGCTTATCTACATTGGCGAAAAATCGGGATATTTTCAACGTTTAGATGGCTGTTACTTCTTCGATACAAAACGGATTTTAAAAAAGAATAGATAAAGGTTTCAGCTACATCGAAGTGTAGTTTTTGGGAATCGGACTCGAAATATTTTAAGGTATTAGATCTG
Unaligned ( gi|3 ): AGTTTCTCTGACATCTTCATGATATCACTGTCTTGTCCGAAGATAAAAGAAAGAATCTGATTGGTTTAAATTCAATCTCTTTATTTTTCAACAAACCGTCAATAAGACAAACATTTTGCTGCAGACTGGTGATTCTGACTGTCTGGAGAATATCATGCTATCTTGGACAGGCTTATCTACATAAAAAAAGTCATTGGCAAAAATTTGGAATTTTTTTAGCATTTTGATAACTGGTACTTCTTTGATACAAAA
Unaligned ( gi|13 ): TATATATATATATTCTATATCCATATATTATATGTAGTATAATAAACAGATGAAGACAAGGGTAATATCGCGAACTTTCA
Unaligned ( gi|14 ): ACAGCGGGCAGGCTTGTCCACACTTGCGAACATTTCGGGATAGTTTCAACGTCTTTGGTACTTCTTCAAACAAA
Alignments
lowQualScore : 222222 33 11 111111 11111111
lowQualScore : 6 5 0 5 666666 00 77 33 7777777 999999 333 55555 000000 55 55555555 2 444
lowQualScore : . . . . ...... .. .. .. ....... ...... ... ..... ...... .. ........ . ...
lowQualScore : 6 7 3 7 444444 33 77 11 2222222 777777 777 33333 555555 88 33333333 2 222
consensus : AGGGGCTAGTGAC-AATATATA-TT------CTATATCCCT--ATATAA-TAGTATAATAAAGTCTTTATTATACTA-------TATA------TA---G-----GGATATAGA------AT--AT--------ATA-TTGT--NACTAGCCCCT
Reference ( family-488 ) : AGGGGCTAGTNAC-AATATATA-TT------CTATATCCCTT-ATATAA-TAGTATAATAAAGTCTTTATTATACTA-------TATA------TA---G-----GGATATAGA------AT--AT--------ATA-TTGT--NACTAGCCCCT
gi|1 : GTCTTTATTACACTA-------TATA------TA---G-----GGATTTAGA------AT--AT--------ATATTTGT--AACTAACC
gi|10 : AGGGAATAGTGAC-AATATATA-TT------CTATATCCCT--GTATTA-TAGTATA-----GTCTTTAGTATACTA-------TATAATA---TA---G-----GGATATAGA------AT--AT--------ATA-TTGT--CACTAGCCCCTaagggcactgtcaccaacttttactacagctcaaacccaatgctctaattcaaacaattccatgtcccatccccatatactatacactcgcaaagctgaaacatatttattcaacagtacctaccttttttaaaatctgttttgtatagaataagtaccagtcgtggagacgttgaaaatttttctacattgtagacaagtgtgtcctttcaaaaacagttattttttacagctatacgcaggtattatgaatgtgtcaggataaacagccaccttttacatgtgaaggaacaaaatagcaaatgccatgataaaaagatagtgagacaaacattgtcaaaatttcagatttattcagaacaatttctctgccattttcataacgtcacttgtctgcagctaaaataagaatctgattggtaaaaatctatctatttattttgaacaaatcgtcaattagacaaaaatttgctgaggacttgtgatgaatggaggataccagtcaggcttatctacattggcgaaaaatcaggatattt
gi|11 : acAGGGGCTAGT--------------T------TTAAATCCCT--ATATAAGTA-TATAATTAAGTCTTTATTATACTG-------TATA------TA---G-----GGATTTAGAATAT--AT--AT--------ATA-TTGT--AACTAGCCCCT
gi|12 : acAGGGGCTAGTGCC-AATAAATA-TT------TTATATCTCT--ATATA--TAGTATAATAAAGTCTTTATAATACTA-------TATA------AA---G-----GGATATAAA------CT--AT--------ATgt
gi|13 : acTTTATTATACTA-------CATA------TA---ATATATGGATATAGA------AT--AT--------ATA-Tcc
gi|15 : tatatTTATTATACTA-------TATA------AA---G-----GGCTTAAAA------AT--AT--------ATA-TTGT--CACTAGCCcagatgaagacaagggtaatatcgcgaactttca
gi|15 : aaaAGGGGCTAGTGAC-AATACTTA-TTATA---CTATATgtattgtcactagcccctgtg
gi|16 : aaaggctagtgacaatatatatttttaagccctttA-TAGTGTAATAAAGTCTTTATTATACTG-------TATA------TA---G-----GGATATAGA------AT--AT--------GTA-ATGT--CACTTGCCCCTgtg
gi|17 : acTTATTATACTAGTATCTATATA------TA---G-----GAATATATA------AT--AT--------ATA-TTGC--CAATAGCTCCTac
gi|18 : atAGACTTTATTAAACTA-------TATA------TA---G-----GGATTTAGAATATATAT--AT--------ATA-TTGT--AACTAGCCCCTttacta
gi|19 : AGACTTTATTATACTA-------TATA------TA---A-----GGATTTAGA------AT--A---------A-A-TTGT--TACTAGCC
gi|20 : gtgcTA------TT---G-----GGATATAAA------ATGCAT--------ATA-TT-TAACACTAGCCCCT
gi|21 : tcttTATA-TA--------ATA------TA---G-----GAATATAAA------AT--AT--------ATA-TTGT--CACTAGCCTCTgtgggat
gi|22 : cacTA-------TACA------TA---G-----GTATTTAGA------ATACAT--------ATA-TTGT--AACTAGCTCCTg
gi|4 : aaGTGTTTATTATAC-----------TA------TA---G-----GGATATAG-------AT--AT--------AAA-ATGT--GACTAGCCCCTct
gi|5 : cacCTTTATTACACTA-------TATACATGTATA---G-----GGATATAGA------AT--ATATATAATAATA-TTGT--AACTAGCCCCTaagggaactgtcgtaaacttttactgcaacactaactcaactttattatcaaaaaaaaatcgagtctcaattcctgtaaatatacactcctgtgtggatgaaacatttatctatgcaacagtgttttctttagttgtgaagataactgcttgggaaggatat
gi|6 : cagggttcatacagataaggactgataaaattcaagcacttttcaaggtagaaatttttcaatttcaagcacaaaaatagatgagctcgccatacatacttactgtaccttaggagttcctgcacagcgatctgTTTATTATACTA-------TATA------TA---G-----GTATATAGA------AT--ATATATAATAATA-TTGT--AACTAGCCCCT
gi|7 : agggttcatactgataaagactgataaaattcaagcacttttcaaggtagaaatttttaatttcaagcactaaaatagataaactcgccatacatatttactgtaccttaggagtttttgcacagcaacacgAGGGGCTTGTTAC-AATATATA-TTTATATTCTAAATCCCT--ATATA--TAGTATAATCTAGTCTTTATTATACTG-------TATA------TATTTA-----GAATATATA------TT--AT---------TA-TTAT--TACTAGCCCCT
gi|8 : GGGCTAGTTAC-AAGATATACTT------CTATATCCCTT-A-ATA--CAGTATAATACCGACTTTATTATACTA-------TATA------TA---G-----GTATATAGA------AT--AT--------A-A-TTAT--gtg
gi|9 : acaggaactggataatatatAGGGGCTAGTGACCAATATATA-TT------TTATATCCCTTTATATAA-TAGTATAATAAAGTCTTTATTATACTA-------TTTA------TA---G-----GGATATAAA------AT--AC--------ATA-TTGT--CACTAGCCCCTtgt
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): TTGTCTGCAGCTAAAAGAAAGAATATGATTGGTCGAAAATCAAGTTTTTATTTTTCGACAAATCGTCAATTAGACAAATATTTACTGCGGATATCGGATAGGCTTATCTACATTGGCGAAAAATCGGGATATTTTCAACGTTTAGATGGCTGTTACTTCTTCGATACAAAACGGATTTTAAAAAAGAATAGATAAAGGTTTCAGCTACATCGAAGTGTAGTTTTTGGGAATCGGACTCGAAATATTTTAAGGTATTAGATCTG
Unaligned ( gi|3 ): AGTTTCTCTGACATCTTCATGATATCACTGTCTTGTCCGAAGATAAAAGAAAGAATCTGATTGGTTTAAATTCAATCTCTTTATTTTTCAACAAACCGTCAATAAGACAAACATTTTGCTGCAGACTGGTGATTCTGACTGTCTGGAGAATATCATGCTATCTTGGACAGGCTTATCTACATAAAAAAAGTCATTGGCAAAAATTTGGAATTTTTTTAGCATTTTGATAACTGGTACTTCTTTGATACAAAA
Unaligned ( gi|14 ): ACAGCGGGCAGGCTTGTCCACACTTGCGAACATTTCGGGATAGTTTCAACGTCTTTGGTACTTCTTCAAACAAA
Alignments
lowQualScore : 1111111 2222222 111111 11111111
lowQualScore : 55555 55 4444444 55 3333333 0 444 777777 444 66666 0 222222 2 33 88888888 2 1
lowQualScore : ..... .. ....... .. ....... . ... ...... ... ..... . ...... . .. ........ . .
lowQualScore : 99999 55 5555555 55 7777777 2 444 222222 444 22222 8 555555 5 44 11111111 7 0
consensus : AGGGGCTAGTG--AC-AATATAT--ATT------TTATATCCCT--ATATA-A-----TAGTATAATAAAGTCTTTATTATACTAT---ATA------TA---G-----GGATATAGA------A-T--AT--------ATA-TTGTNACTAGCCCCT
Reference ( family-488 ) : AGGGGCTAGTG--AC-AATATAT--ATT------CTATATCCCT--ATATA-A-----TAGTATAATAAAGTCTTTATTATACTAT---ATA------TA---G-----GGATATAGA------A-T--AT--------ATA-TTGTNACTAGCCCCT
gi|1 : GTCTTTATTACACTAT---ATA------TA---G-----GGATTTAGA------A-T--AT--------ATATTTGTAACTAACC
gi|10 : AGGGAATAGTG--AC-AATATAT--ATT------CTATATCCCT--GTATT-A-----TAGTAT-----AGTCTTTAGTATACTATATAATA------TA---G-----GGATATAGA------A-T--AT--------ATA-TTGTCACTAGCCCCTaagggcactgtcaccaacttttactacagctcaaacccaatgctctaattcaaacaattccatgtcccatccccatatactatacactcgcaaagctgaaacatatttattcaacagtacctaccttttttaaaatctgttttgtatagaataagtaccagtcgtggagacgttgaaaatttttctacattgtagacaagtgtgtcctttcaaaaacagttattttttacagctatacgcaggtattatgaatgtgtcaggataaacagccaccttttacatgtgaaggaacaaaatagcaaatgccatgataaaaagatagtgagacaaacattgtcaaaatttcagatttattcagaacaatttctctgccattttcataacgtcacttgtctgcagctaaaataagaatctgattggtaaaaatctatctatttattttgaacaaatcgtcaattagacaaaaatttgctgaggacttgtgatgaatggaggataccagtcaggcttatctacattggcgaaaaatcaggatattt
gi|11 : acAGGGGCTAGT-----------------T------TTAAATCCCT--ATATA-AG----TA-TATAATTAAGTCTTTATTATACTGT---ATA------TA---G-----GGATTTAGAATAT--A-T--AT--------ATA-TTGTAACTAGCCCCT
gi|12 : acAGGGGCTAGTG--CC-AATAAAT--ATT------TTATATCTCT--ATATA-------TAGTATAATAAAGTCTTTATAATACTAT---ATA------AA---G-----GGATATAAA------C-T--AT--------ATgt
gi|13 : acTTTATTATACTAC---ATA------TA---ATATATGGATATAGA------A-T--AT--------ATA-Tcc
gi|15 : tatatTTATTATACTAT---ATA------AA---G-----GGCTTAAAA------A-T--AT--------ATA-TTGTCACTAGCCcagatgaagacaagggtaatatcgcgaactttca
gi|15 : aaaAGGGGCTAGTG--AC-AATACTT--AT--------TATA---CT--ATATA-A-----gtattgtcactagcccctgtg
gi|16 : aaaggctagtgacaatatatatttttaagccct-A-----TAGTGTAATAAAGTCTTTATTATACTGT---ATA------TA---G-----GGATATAGA------A-T--AT--------GTA-ATGTCACTTGCCCCTgtg
gi|17 : acAGGAGCTATTG--GC-AATATAT--ATT------ATATATTCCT--ATATATAGATACTAGTATAATAAac
gi|18 : atAGACTTTATTAAACTAT---ATA------TA---G-----GGATTTAGAATATATA-T--AT--------ATA-TTGTAACTAGCCCCTttacta
gi|19 : AGACTTTATTATACTAT---ATA------TA---A-----GGATTTAGA------A-T--A---------A-A-TTGTTACTAGCC
gi|20 : gtgcAGGGGCTAGTGTTA--AATATATGCATT------TTATATCCCA--ATA
gi|21 : tcttAGAGGCTAGTG--AC-AATATAT--ATT------TTATATTCCT--ATATT-A-----TAgtgggat
gi|22 : cacTAT---ACA------TA---G-----GTATTTAGA------A-TACAT--------ATA-TTGTAACTAGCTCCTtag
gi|4 : aaGTGTTTATTATAC-------TA------TA---G-----GGATATAG-------A-T--AT--------AAA-ATGTGACTAGCCCCTct
gi|5 : cacCTTTATTACACTAT---ATACATGTATA---G-----GGATATAGA------A-T--ATATATAATAATA-TTGTAACTAGCCCCTaagggaactgtcgtaaacttttactgcaacactaactcaactttattatcaaaaaaaaatcgagtctcaattcctgtaaatatacactcctgtgtggatgaaacatttatctatgcaacagtgttttctttagttgtgaagataactgcttgggaaggatat
gi|6 : cagggttcatacagataaggactgataaaattcaagcacttttcaaggtagaaatttttcaatttcaagcacaaaaatagatgagctcgccatacatacttactgtaccttaggagttcctgcacagcgatctgTTTATTATACTAT---ATA------TA---G-----GTATATAGA------A-T--ATATATAATAATA-TTGTAACTAGCCCCT
gi|7 : agggttcatactgataaagactgataaaattcaagcacttttcaaggtagaaatttttaatttcaagcactaaaatagataaactcgccatacatatttactgtaccttaggagtttttgcacagcaacacgAGGGGCTTGTT--AC-AATATAT--ATTTATATTCTAAATCCCT--ATATA-------TAGTATAATCTAGTCTTTATTATACTGT---ATA------TATTTA-----GAATATATA------T-T--AT---------TA-TTATTACTAGCCCCT
gi|8 : --AT-AAT-TAT--ATT------CTATATACCT--ATATA-------TAGTATAATAAAGTCGGTATTATACTGT---ATT------AA---G-----GGATATAGA------AGT--AT--------ATC-TTGTAACTAGCCCgtg
gi|9 : acaggaactggataatatatAGGGGCTAGTG--ACCAATATAT--ATT------TTATATCCCTTTATATA-A-----TAGTATAATAAAGTCTTTATTATACTAT---TTA------TA---G-----GGATATAAA------A-T--AC--------ATA-TTGTCACTAGCCCCTtgt
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): TTGTCTGCAGCTAAAAGAAAGAATATGATTGGTCGAAAATCAAGTTTTTATTTTTCGACAAATCGTCAATTAGACAAATATTTACTGCGGATATCGGATAGGCTTATCTACATTGGCGAAAAATCGGGATATTTTCAACGTTTAGATGGCTGTTACTTCTTCGATACAAAACGGATTTTAAAAAAGAATAGATAAAGGTTTCAGCTACATCGAAGTGTAGTTTTTGGGAATCGGACTCGAAATATTTTAAGGTATTAGATCTG
Unaligned ( gi|3 ): AGTTTCTCTGACATCTTCATGATATCACTGTCTTGTCCGAAGATAAAAGAAAGAATCTGATTGGTTTAAATTCAATCTCTTTATTTTTCAACAAACCGTCAATAAGACAAACATTTTGCTGCAGACTGGTGATTCTGACTGTCTGGAGAATATCATGCTATCTTGGACAGGCTTATCTACATAAAAAAAGTCATTGGCAAAAATTTGGAATTTTTTTAGCATTTTGATAACTGGTACTTCTTTGATACAAAA
Unaligned ( gi|14 ): ACAGCGGGCAGGCTTGTCCACACTTGCGAACATTTCGGGATAGTTTCAACGTCTTTGGTACTTCTTCAAACAAA
Alignments
lowQualScore : 11111 111 111111 11111111
lowQualScore : 55 4 55 4 00000 55 111 0 8888888 444 777777 444 66666 222222 2 33 88888888 2 1
lowQualScore : .. . .. . ..... .. ... . ....... ... ...... ... ..... ...... . .. ........ . .
lowQualScore : 55 0 55 0 00000 55 999 2 1111111 444 222222 444 22222 555555 5 44 11111111 7 0
consensus : AGGGGCTAGTG--AC-AATATAT--ATTT-TAT-----ATCCCT--ATATAA-TAGTATAATAAAGTCTTTATTATACTA-------T---ATA------TA---G-----GGATATAGA------A-T--AT--------ATA-TTGTNACTAGCCCCT
Reference ( family-488 ) : AGGGGCTAGTG--AC-AATATAT--ATTT-TAT-----ATCCCT--ATATAA-TAGTATAATAAAGTCTTTATTATACTA-------T---ATA------TA---G-----GGATATAGA------A-T--AT--------ATA-TTGTNACTAGCCCCT
gi|1 : GTCTTTATTACACTA-------T---ATA------TA---G-----GGATTTAGA------A-T--AT--------ATATTTGTAACTAACC
gi|10 : AGGGAATAGTG--AC-AATATAT--ATTC-TAT-----ATCCCT--GTATTA-TAGTAT-----AGTCTTTAGTATACTA-------TATAATA------TA---G-----GGATATAGA------A-T--AT--------ATA-TTGTCACTAGCCCCTaagggcactgtcaccaacttttactacagctcaaacccaatgctctaattcaaacaattccatgtcccatccccatatactatacactcgcaaagctgaaacatatttattcaacagtacctaccttttttaaaatctgttttgtatagaataagtaccagtcgtggagacgttgaaaatttttctacattgtagacaagtgtgtcctttcaaaaacagttattttttacagctatacgcaggtattatgaatgtgtcaggataaacagccaccttttacatgtgaaggaacaaaatagcaaatgccatgataaaaagatagtgagacaaacattgtcaaaatttcagatttattcagaacaatttctctgccattttcataacgtcacttgtctgcagctaaaataagaatctgattggtaaaaatctatctatttattttgaacaaatcgtcaattagacaaaaatttgctgaggacttgtgatgaatggaggataccagtcaggcttatctacattggcgaaaaatcaggatattt
gi|11 : acAGGGGCTAGT-----------------TT-TAA-----ATCCCT--ATATAAGTA-TATAATTAAGTCTTTATTATACTG-------T---ATA------TA---G-----GGATTTAGAATAT--A-T--AT--------ATA-TTGTAACTAGCCCCT
gi|12 : acAGGGGCTAGTG--CC-AATAAAT--ATTT-TAT-----ATCTCT--ATATA--TAGTATAATAAAGTCTTTATAATACTA-------T---ATA------AA---G-----GGATATAAA------C-T--AT--------ATgt
gi|13 : acTTTATTATACTA-------C---ATA------TA---ATATATGGATATAGA------A-T--AT--------ATA-Tcc
gi|15 : tatatGGCTAGTG--AC-AATATAT--ATTT-TTA-----AGCCCT--TTAT-A-TAGTATAATAAcagatgaagacaagggtaatatcgcgaactttca
gi|15 : aaaAGGGGCTAGTG--AC-AATACTT--A--T-TAT-----A---CT--ATATAA-gtattgtcactagcccctgtg
gi|16 : aaaggctagtgacaatatatatttttaagccctA-TAGTGTAATAAAGTCTTTATTATACTG-------T---ATA------TA---G-----GGATATAGA------A-T--AT--------GTA-ATGTCACTTGCCCCTgtg
gi|17 : acTTATTATACTAGTATCTAT---ATA------TA---G-----GAATATATA------A-T--AT--------ATA-TTGCCAATAGCTCCTac
gi|18 : atAGACTTTATTAAACTA-------T---ATA------TA---G-----GGATTTAGAATATATA-T--AT--------ATA-TTGTAACTAGCCCCTttacta
gi|19 : AGACTTTATTATACTA-------T---ATA------TA---A-----GGATTTAGA------A-T--A---------A-A-TTGTTACTAGCC
gi|20 : gtgcAGGGGCTAGTGTTA--AATATATGCATTT-TAT-----ATCCCA--ATA
gi|21 : tcttAGAGGCTAGTG--AC-AATATAT--ATTT-TAT-----ATTCCT--ATATTA-TAgtgggat
gi|22 : cacTA-------T---ACA------TA---G-----GTATTTAGA------A-TACAT--------ATA-TTGTAACTAGCTCCTtag
gi|4 : aaGTGTTTATTATAC--------------TA------TA---G-----GGATATAG-------A-T--AT--------AAA-ATGTGACTAGCCCCTct
gi|5 : cacCTTTATTACACTA-------T---ATACATGTATA---G-----GGATATAGA------A-T--ATATATAATAATA-TTGTAACTAGCCCCTaagggaactgtcgtaaacttttactgcaacactaactcaactttattatcaaaaaaaaatcgagtctcaattcctgtaaatatacactcctgtgtggatgaaacatttatctatgcaacagtgttttctttagttgtgaagataactgcttgggaaggatat
gi|6 : cagggttcatacagataaggactgataaaattcaagcacttttcaaggtagaaatttttcaatttcaagcacaaaaatagatgagctcgccatacatacttactgtaccttaggagttcctgcacagcgatctgTTTATTATACTA-------T---ATA------TA---G-----GTATATAGA------A-T--ATATATAATAATA-TTGTAACTAGCCCCT
gi|7 : agggttcatactgataaagactgataaaattcaagcacttttcaaggtagaaatttttaatttcaagcactaaaatagataaactcgccatacatatttactgtaccttaggagtttttgcacagcaacacgAGGGGCTTGTT--AC-AATATAT--ATTTATATTCTAAATCCCT--ATATA--TAGTATAATCTAGTCTTTATTATACTG-------T---ATA------TATTTA-----GAATATATA------T-T--AT---------TA-TTATTACTAGCCCCT
gi|8 : --AT-AAT-TAT--ATTC-TAT-----ATACCT--ATATA--TAGTATAATAAAGTCGGTATTATACTG-------T---ATT------AA---G-----GGATATAGA------AGT--AT--------ATC-TTGTAACTAGCCCgtg
gi|9 : acaggaactggataatatatAGGGGCTAGTG--ACCAATATAT--ATTT-TAT-----ATCCCTTTATATAA-TAGTATAATAAAGTCTTTATTATACTA-------T---TTA------TA---G-----GGATATAAA------A-T--AC--------ATA-TTGTCACTAGCCCCTtgt
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): TTGTCTGCAGCTAAAAGAAAGAATATGATTGGTCGAAAATCAAGTTTTTATTTTTCGACAAATCGTCAATTAGACAAATATTTACTGCGGATATCGGATAGGCTTATCTACATTGGCGAAAAATCGGGATATTTTCAACGTTTAGATGGCTGTTACTTCTTCGATACAAAACGGATTTTAAAAAAGAATAGATAAAGGTTTCAGCTACATCGAAGTGTAGTTTTTGGGAATCGGACTCGAAATATTTTAAGGTATTAGATCTG
Unaligned ( gi|3 ): AGTTTCTCTGACATCTTCATGATATCACTGTCTTGTCCGAAGATAAAAGAAAGAATCTGATTGGTTTAAATTCAATCTCTTTATTTTTCAACAAACCGTCAATAAGACAAACATTTTGCTGCAGACTGGTGATTCTGACTGTCTGGAGAATATCATGCTATCTTGGACAGGCTTATCTACATAAAAAAAGTCATTGGCAAAAATTTGGAATTTTTTTAGCATTTTGATAACTGGTACTTCTTTGATACAAAA
Unaligned ( gi|14 ): ACAGCGGGCAGGCTTGTCCACACTTGCGAACATTTCGGGATAGTTTCAACGTCTTTGGTACTTCTTCAAACAAA
Alignments
lowQualScore : 11111 111 111111 11111111
lowQualScore : 55 4 55 4 00000 55 111 0 8888888 444 777777 444 66666 222222 2 33 88888888 2 1
lowQualScore : .. . .. . ..... .. ... . ....... ... ...... ... ..... ...... . .. ........ . .
lowQualScore : 55 0 55 0 00000 55 999 2 1111111 444 222222 444 22222 555555 5 44 11111111 7 0
consensus : AGGGGCTAGTG--AC-AATATAT--ATTT-TAT-----ATCCCT--ATATAA-TAGTATAATAAAGTCTTTATTATACTA-------T---ATA------TA---G-----GGATATAGA------A-T--AT--------ATA-TTGTNACTAGCCCCT
Reference ( family-488 ) : AGGGGCTAGTG--AC-AATATAT--ATTT-TAT-----ATCCCT--ATATAA-TAGTATAATAAAGTCTTTATTATACTA-------T---ATA------TA---G-----GGATATAGA------A-T--AT--------ATA-TTGTNACTAGCCCCT
gi|1 : GTCTTTATTACACTA-------T---ATA------TA---G-----GGATTTAGA------A-T--AT--------ATATTTGTAACTAACC
gi|10 : AGGGAATAGTG--AC-AATATAT--ATTC-TAT-----ATCCCT--GTATTA-TAGTAT-----AGTCTTTAGTATACTA-------TATAATA------TA---G-----GGATATAGA------A-T--AT--------ATA-TTGTCACTAGCCCCTaagggcactgtcaccaacttttactacagctcaaacccaatgctctaattcaaacaattccatgtcccatccccatatactatacactcgcaaagctgaaacatatttattcaacagtacctaccttttttaaaatctgttttgtatagaataagtaccagtcgtggagacgttgaaaatttttctacattgtagacaagtgtgtcctttcaaaaacagttattttttacagctatacgcaggtattatgaatgtgtcaggataaacagccaccttttacatgtgaaggaacaaaatagcaaatgccatgataaaaagatagtgagacaaacattgtcaaaatttcagatttattcagaacaatttctctgccattttcataacgtcacttgtctgcagctaaaataagaatctgattggtaaaaatctatctatttattttgaacaaatcgtcaattagacaaaaatttgctgaggacttgtgatgaatggaggataccagtcaggcttatctacattggcgaaaaatcaggatattt
gi|11 : acAGGGGCTAGT-----------------TT-TAA-----ATCCCT--ATATAAGTA-TATAATTAAGTCTTTATTATACTG-------T---ATA------TA---G-----GGATTTAGAATAT--A-T--AT--------ATA-TTGTAACTAGCCCCT
gi|12 : acAGGGGCTAGTG--CC-AATAAAT--ATTT-TAT-----ATCTCT--ATATA--TAGTATAATAAAGTCTTTATAATACTA-------T---ATA------AA---G-----GGATATAAA------C-T--AT--------ATgt
gi|13 : acTTTATTATACTA-------C---ATA------TA---ATATATGGATATAGA------A-T--AT--------ATA-Tcc
gi|15 : tatatGGCTAGTG--AC-AATATAT--ATTT-TTA-----AGCCCT--TTAT-A-TAGTATAATAAcagatgaagacaagggtaatatcgcgaactttca
gi|15 : aaaAGGGGCTAGTG--AC-AATACTT--A--T-TAT-----A---CT--ATATAA-gtattgtcactagcccctgtg
gi|16 : aaaggctagtgacaatatatatttttaagccctA-TAGTGTAATAAAGTCTTTATTATACTG-------T---ATA------TA---G-----GGATATAGA------A-T--AT--------GTA-ATGTCACTTGCCCCTgtg
gi|17 : acTTATTATACTAGTATCTAT---ATA------TA---G-----GAATATATA------A-T--AT--------ATA-TTGCCAATAGCTCCTac
gi|18 : atAGACTTTATTAAACTA-------T---ATA------TA---G-----GGATTTAGAATATATA-T--AT--------ATA-TTGTAACTAGCCCCTttacta
gi|19 : AGACTTTATTATACTA-------T---ATA------TA---A-----GGATTTAGA------A-T--A---------A-A-TTGTTACTAGCC
gi|20 : gtgcAGGGGCTAGTGTTA--AATATATGCATTT-TAT-----ATCCCA--ATA
gi|21 : tcttAGAGGCTAGTG--AC-AATATAT--ATTT-TAT-----ATTCCT--ATATTA-TAgtgggat
gi|22 : cacTA-------T---ACA------TA---G-----GTATTTAGA------A-TACAT--------ATA-TTGTAACTAGCTCCTtag
gi|4 : aaGTGTTTATTATAC--------------TA------TA---G-----GGATATAG-------A-T--AT--------AAA-ATGTGACTAGCCCCTct
gi|5 : cacCTTTATTACACTA-------T---ATACATGTATA---G-----GGATATAGA------A-T--ATATATAATAATA-TTGTAACTAGCCCCTaagggaactgtcgtaaacttttactgcaacactaactcaactttattatcaaaaaaaaatcgagtctcaattcctgtaaatatacactcctgtgtggatgaaacatttatctatgcaacagtgttttctttagttgtgaagataactgcttgggaaggatat
gi|6 : cagggttcatacagataaggactgataaaattcaagcacttttcaaggtagaaatttttcaatttcaagcacaaaaatagatgagctcgccatacatacttactgtaccttaggagttcctgcacagcgatctgTTTATTATACTA-------T---ATA------TA---G-----GTATATAGA------A-T--ATATATAATAATA-TTGTAACTAGCCCCT
gi|7 : agggttcatactgataaagactgataaaattcaagcacttttcaaggtagaaatttttaatttcaagcactaaaatagataaactcgccatacatatttactgtaccttaggagtttttgcacagcaacacgAGGGGCTTGTT--AC-AATATAT--ATTTATATTCTAAATCCCT--ATATA--TAGTATAATCTAGTCTTTATTATACTG-------T---ATA------TATTTA-----GAATATATA------T-T--AT---------TA-TTATTACTAGCCCCT
gi|8 : --AT-AAT-TAT--ATTC-TAT-----ATACCT--ATATA--TAGTATAATAAAGTCGGTATTATACTG-------T---ATT------AA---G-----GGATATAGA------AGT--AT--------ATC-TTGTAACTAGCCCgtg
gi|9 : acaggaactggataatatatAGGGGCTAGTG--ACCAATATAT--ATTT-TAT-----ATCCCTTTATATAA-TAGTATAATAAAGTCTTTATTATACTA-------T---TTA------TA---G-----GGATATAAA------A-T--AC--------ATA-TTGTCACTAGCCCCTtgt
blockSeqs : TT C GC A TCTAA TT AAG GTATCTA ATA CATGTA TTT TATAT ATATAT G AC ATATAATA . C
blockSeqs : . . . . . . AA . . . . . ATAT . . ATATAATA . A
blockSeqs : . . . . . . TA . . . . . . . . . . C
blockSeqs : . . . . . . AA . . . . . . . . . . C
blockSeqs : . . . . . . A . . . . . . . . . . A
blockSeqs : . . . . . . A . . . . . . . . . . T
blockSeqs : . . . . . . A . . . . . . . . . . A
blockSeqs : . . . . . . A . . . . . . . . . . G
blockSeqs : . . . . . . . . . . . . . . . . A
blockSeqs : . . . . . . . . . . A
blockSeqs : . . . . . . . . . . T
blockSeqs : . . . . . . . . . . A
blockSeqs : . . . . . . . . . . C
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqCons : A**
originalCons : AGGGGCTAGTG--AC-AATATAT--ATTT-TAT-----ATCCCT--ATATAA-TAGTATAATAAAGTCTTTATTATACTA-------T---ATA------TA---G-----GGATATAGA------A-T--AT--------ATA-TTGTNACTAGCCCCT
finalCons : AGGGGCTAGTG--AC-AATATAT--ATTT-TAT-----ATCCCT--ATATA--TAGTATAATAAAGTCTTTATTATACTA-------T---ATA------TA---G-----GGATATAGA------A-T--AT--------ATA-TTGTNACTAGCCCCT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): TTGTCTGCAGCTAAAAGAAAGAATATGATTGGTCGAAAATCAAGTTTTTATTTTTCGACAAATCGTCAATTAGACAAATATTTACTGCGGATATCGGATAGGCTTATCTACATTGGCGAAAAATCGGGATATTTTCAACGTTTAGATGGCTGTTACTTCTTCGATACAAAACGGATTTTAAAAAAGAATAGATAAAGGTTTCAGCTACATCGAAGTGTAGTTTTTGGGAATCGGACTCGAAATATTTTAAGGTATTAGATCTG
Unaligned ( gi|3 ): AGTTTCTCTGACATCTTCATGATATCACTGTCTTGTCCGAAGATAAAAGAAAGAATCTGATTGGTTTAAATTCAATCTCTTTATTTTTCAACAAACCGTCAATAAGACAAACATTTTGCTGCAGACTGGTGATTCTGACTGTCTGGAGAATATCATGCTATCTTGGACAGGCTTATCTACATAAAAAAAGTCATTGGCAAAAATTTGGAATTTTTTTAGCATTTTGATAACTGGTACTTCTTTGATACAAAA
Unaligned ( gi|14 ): ACAGCGGGCAGGCTTGTCCACACTTGCGAACATTTCGGGATAGTTTCAACGTCTTTGGTACTTCTTCAAACAAA
Alignments
lowQualScore : 1111111 111111 111111 22222222
lowQualScore : 44 3 1 44 3 88888 44 3 4444444 55 333333 555 77777 444444 2 33 00000000 3 1
lowQualScore : .. . . .. . ..... .. . ....... .. ...... ... ..... ...... . .. ........ . .
lowQualScore : 66 3 2 66 3 33333 66 3 2222222 00 222222 000 11111 333333 9 99 77777777 1 0
consensus : AGGGGCTAGTG--AC-AATATAT--ATTT-TAT-----ATCCCT--ATAT-A-------TAGTATA--ATAAAGTCTTTATTATACTATATA------TA---G-----GGATATAGA------A-T--AT--------ATA-TTGTAACTAGCCCCT
Reference ( family-488 ) : AGGGGCTAGTG--AC-AATATAT--ATTT-TAT-----ATCCCT--ATAT-A-------TAGTATA--ATAAAGTCTTTATTATACTATATA------TA---G-----GGATATAGA------A-T--AT--------ATA-TTGTNACTAGCCCCT
gi|1 : GTCTTTATTACACTATATA------TA---G-----GGATTTAGA------A-T--AT--------ATATTTGTAACTAACC
gi|10 : AGGGAATAGTG--AC-AATATAT--ATTC-TAT-----ATCCCT--GTATTA-------TAGTATA-------GTCTTTAGTATACTATATAATA---TA---G-----GGATATAGA------A-T--AT--------ATA-TTGTCACTAGCCCCTaagggcactgtcaccaacttttactacagctcaaacccaatgctctaattcaaacaattccatgtcccatccccatatactatacactcgcaaagctgaaacatatttattcaacagtacctaccttttttaaaatctgttttgtatagaataagtaccagtcgtggagacgttgaaaatttttctacattgtagacaagtgtgtcctttcaaaaacagttattttttacagctatacgcaggtattatgaatgtgtcaggataaacagccaccttttacatgtgaaggaacaaaatagcaaatgccatgataaaaagatagtgagacaaacattgtcaaaatttcagatttattcagaacaatttctctgccattttcataacgtcacttgtctgcagctaaaataagaatctgattggtaaaaatctatctatttattttgaacaaatcgtcaattagacaaaaatttgctgaggacttgtgatgaatggaggataccagtcaggcttatctacattggcgaaaaatcaggatattt
gi|11 : acAGGGGCTAGT-----------------TT-TAA-----ATCCCT--ATAT-A--------AGTATATAATTAAGTCTTTATTATACTGTATA------TA---G-----GGATTTAGAATAT--A-T--AT--------ATA-TTGTAACTAGCCCCT
gi|12 : acAGGGGCTAGTG--CC-AATAAAT--ATTT-TAT-----ATCTCT--ATAT-A-------TAGTATA--ATAAAGTCTTTATAATACTATATA------AA---G-----GGATATAAA------C-T--AT--------ATgt
gi|13 : acTTTATTATACTACATA------TA---ATATATGGATATAGA------A-T--AT--------ATA-Tcc
gi|15 : tatatGGCTAGTG--AC-AATATAT--ATTT-TTA-----AGCCCT--TTAT-A-------TAGTATA--ATAAcagatgaagacaagggtaatatcgcgaactttca
gi|15 : aaaAGGGGCTAGTG--AC-AATACTT--A--T-TAT-----A---CT--ATAT-A-------AAGgtattgtcactagcccctgtg
gi|16 : aaaggctagtgacaatatatatttttaagccT-A-------TAGTGTA--ATAAAGTCTTTATTATACTGTATA------TA---G-----GGATATAGA------A-T--AT--------GTA-ATGTCACTTGCCCCTgtg
gi|17 : acAGGAGCTATTG--GC-AATATAT--ATTA-TAT-----ATTCCT--ATAT-ATAGATACTAGTATA--ATAAc
gi|18 : atAGACTTTATTAAACTATATA------TA---G-----GGATTTAGAATATATA-T--AT--------ATA-TTGTAACTAGCCCCTttacta
gi|19 : GGCTAGTA--AC-AAT-T-T--ATTC-TAA-----ATCCTT--ATAT-A-------TAGTATA--ATAAAGTCT
gi|20 : gtgcAGGGGCTAGTGTTA--AATATATGCATTT-TAT-----ATCCCA--ATA
gi|21 : tcttAGAGGCTAGTG--AC-AATATAT--ATTT-TAT-----ATTCCT--ATAT---------TA-TATA--gtgggat
gi|22 : cacTATACA------TA---G-----GTATTTAGA------A-TACAT--------ATA-TTGTAACTAGCTCCTg
gi|4 : aaGTGTTTATTATAC----TA------TA---G-----GGATATAG-------A-T--AT--------AAA-ATGTGACTAGCCCCTct
gi|5 : cacCTTTATTACACTATATACATGTATA---G-----GGATATAGA------A-T--ATATATAATAATA-TTGTAACTAGCCCCTaagggaactgtcgtaaacttttactgcaacactaactcaactttattatcaaaaaaaaatcgagtctcaattcctgtaaatatacactcctgtgtggatgaaacatttatctatgcaacagtgttttctttagttgtgaagataactgcttgggaaggatat
gi|6 : cagggttcatacagataaggactgataaaattcaagcacttttcaaggtagaaatttttcaatttcaagcacaaaaatagatgagctcgccatacatacttactgtaccttaggagttcctgcacagcgatctgTTTATTATACTATATA------TA---G-----GTATATAGA------A-T--ATATATAATAATA-TTGTAACTAGCCCCT
gi|7 : agggttcatactgataaagactgataaaattcaagcacttttcaaggtagaaatttttaatttcaagcactaaaatagataaactcgccatacatatttactgtaccttaggagtttttgcacagcaacacgAGGGGCTTGTT--AC-AATATAT--ATTTATATTCTAAATCCCT--ATAT-A-------TAGTATA--ATCTAGTCTTTATTATACTGTATA------TATTTA-----GAATATATA------T-T--AT---------TA-TTATTACTAGCCCCT
gi|8 : --AT-AAT-TAT--ATTC-TAT-----ATACCT--ATAT-A-------TAGTATA--ATAAAGTCGGTATTATACTGTATT------AA---G-----GGATATAGA------AGT--AT--------ATC-TTGTAACTAGCCCgtg
gi|9 : acaggaactggataatatatAGGGGCTAGTG--ACCAATATAT--ATTT-TAT-----ATCCCTTTATAT-AA------TAGTATA--ATAAAGTCTTTATTATACTATTTA------TA---G-----GGATATAAA------A-T--AC--------ATA-TTGTCACTAGCCCCTtgt
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): TTGTCTGCAGCTAAAAGAAAGAATATGATTGGTCGAAAATCAAGTTTTTATTTTTCGACAAATCGTCAATTAGACAAATATTTACTGCGGATATCGGATAGGCTTATCTACATTGGCGAAAAATCGGGATATTTTCAACGTTTAGATGGCTGTTACTTCTTCGATACAAAACGGATTTTAAAAAAGAATAGATAAAGGTTTCAGCTACATCGAAGTGTAGTTTTTGGGAATCGGACTCGAAATATTTTAAGGTATTAGATCTG
Unaligned ( gi|3 ): AGTTTCTCTGACATCTTCATGATATCACTGTCTTGTCCGAAGATAAAAGAAAGAATCTGATTGGTTTAAATTCAATCTCTTTATTTTTCAACAAACCGTCAATAAGACAAACATTTTGCTGCAGACTGGTGATTCTGACTGTCTGGAGAATATCATGCTATCTTGGACAGGCTTATCTACATAAAAAAAGTCATTGGCAAAAATTTGGAATTTTTTTAGCATTTTGATAACTGGTACTTCTTTGATACAAAA
Unaligned ( gi|14 ): ACAGCGGGCAGGCTTGTCCACACTTGCGAACATTTCGGGATAGTTTCAACGTCTTTGGTACTTCTTCAAACAAA