lowQualScore : 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11111111111111111111111111111111111111111111111111111
lowQualScore : 22 1 33333333333333 222222222 3333333333333 111 1 11111 44444 2 1 1 1 22 1 11 1 5555555555555555555555555 111 11111 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 11111111111 22 1111111 1111 11111 111111111 2222 11111 1 11 11111111 111 99999999999999999999999999999999999999999999999 111111111 1 1 1 1 1 22222222 11 66666666 1 99999999999 1 111 1 11 1 11 88888888888888888888888888888888888888888888888888888
lowQualScore : 1 6 11 2 2 1 6 0 77777777777777 222222222 4 1 3333333333333 0 333 7 3 99999 3 8 8 6 8 8 0 0 22222 0 1 2 0 5 0 3 3 11 5 6 7 99 5 6 66 22 0 5 5 8888888888888888888888888 0 66 0 777 0 22222 3 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 2 2 88888888888 44 4444444 33 1111 9999999999 00000 888888888 1111 11111 2 2 5 2 2 2 5 2 1 44 00000000 555 33 888 555 888 333 1 11111111111111111111111111111111111111111111111 0 1 555 666666666 2 6666 1 7 6 99999 3 0 2 2 4 0 4 4 1 44 1 888 7 1 7 77 66666666 1 66 99 8 66 2 7 6 6 11111111 6 5 00000000000 6 66 0 2 111 0 0 88 0 5 5 3 33 77 6 77 5 11 44444444444444444444444444444444444444444444444444444 6
lowQualScore : . . .. . . . . . .............. ......... . . ............. . ... . . ..... . . . . . . . . ..... . . . . . . . . .. . . . .. . . .. .. . . . ......................... . .. . ... . ..... . ......................................................................................................... . . ........... .. ....... .. .... .......... ..... ......... .... ..... . . . . . . . . . .. ........ ... .. ... ... ... ... . ............................................... . . ... ......... . .... . . . ..... . . . . . . . . . .. . ... . . . .. ........ . .. .. . .. . . . . ........ . . ........... . .. . . ... . . .. . . . . .. .. . .. . .. ..................................................... .
lowQualScore : 0 3 00 5 2 7 0 7 99999999999999 999999999 3 4 4444444444444 7 000 0 0 77777 2 0 0 6 0 0 8 8 88888 2 2 8 0 0 0 2 5 77 7 0 0 00 7 0 66 77 3 0 0 5555555555555555555555555 1 99 1 111 2 55555 7 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 3 5 11111111111 00 8888888 22 5555 2222222222 55555 999999999 4444 22222 5 5 0 5 5 5 0 9 6 33 44444444 000 99 666 000 999 777 5 77777777777777777777777777777777777777777777777 3 8 888 777777777 0 7777 4 3 1 11111 6 2 5 0 4 8 4 4 8 33 9 888 0 4 0 33 00000000 0 22 99 8 55 5 0 7 7 88888888 0 0 00000000000 7 22 2 0 444 1 0 22 4 0 0 0 44 88 0 44 0 00 00000000000000000000000000000000000000000000000000000 7
consensus : GATTTATACAAAACTGAATTCNGTTGCTTCGTGATCTTAGTCCAGTATATAATGGAACGCTCTTTAGAAATCACAGATATAGG-A----A-----CCTCAAAATATAAAG---------ATGACATTACCTGATTACAACTT--AA-------GAGTTTAATACATTGGAAAGAGAGTTATATAGAATAGAGAAAAATA--TATTTGTAAATATATAT-TTTATC-TTAACAAGGGAGG-ATG-TTATATTATTGTAATTNGAA-TTTTTGTATTATATAAAAAATA-TGAATTGGTTTATTTT-TGTAAAGATGCAGTTAAAACGATATGCAAAGGTCAAAG-GTGTCAACTTAAGGAGATGCGATAGCAGGATAATTAGCCATGG-ACTTTGTGTCATTCAGAAATGNTAGGTCGTGTTGTTGGTAAGATATGTG-CGTGTTTAATGTAGAGT-AGTA---AATAA-GAATAA---TTGTT--TATATGTCTCTCCAGGTTTGTCATATAATGTTGGTGATG-----ATATAATATT---------GT-----------ACAGAACAGAAATTTTATTTAGACTTGACCATCAAAACTCATCGTTANNTANAAACATTTNTAATGCATGCAA----------TNTGATGTTTACAATA-----TA-AA-ATATATAGTTCTA-----AATCAATA--T----TGGTGAGAG----------TGG-----TTT---------TAAACAAAATCATAT-TGCAAAAT----CTAGT-A-ATAATA-GTA-T-T-C-GTCGAG-CAGTAT--------TAG---T--ATATAAATA---AT---GATA-T-TTTTAATTAACATAT------------------CT----ATGTA----------TATC---GTATGTGAATT---GT---------TATACG---TAATTTATCAGATTGTATCT----GCATTTGAAAGCTTTTGTCC-AAAATGATGCTAATTTTGTTAACAACGATTTTCGGTTTGTATTTAATAAA-TC-TATAAACTTTACCATACTTGGTCGTCCGGTGTAAT---ATGTTTGTATATATTCATCTCTTATTTGATTGTAGATTGGACAA----ACAATGATAAAATT-CATGTAGGTCATTGNTGACGTGATTACAA-A-CAA---ACTAAAATCGTTATGTACGGGTATGGAATAGTTCAGACTGTTCTG-TCATGAAACGTTCTGTAATGACGAGTTGANCGGCAACGCCATAGGGCTAATCCTGAAGTG--CAGACTATATA-TCTGATTACTTC-AGAA-TAACCCTTTACAACGTAACATAGATGTTGATCGTGTAATCAACGTGTTTGCGTCAT--GCAAATGCAGAAAACTA-AGATTTTCTAAAGTGAC-----------------TTTCCGCATTGCGGCACATATGAACAATCCTCATCAGTACTGTATG
Reference ( gi|1 ) : GATTTATATAAAATTGAATTCGGTTGCGCCATGATCTTAGTCCAGTACATAATGGAACGCTATTTAAAAATCACAGATATATG-A----A-----CCTCAAAATATAAAG---------ATGACATTACCTGATTACAACTT--AA-------GAGTTAAATACATTGGAAAGAGAGTTATATAGAAAAGAGAAAAAGA--TATTTGTAAATATATAT-TTTATC-TAAACAAGGGAGG-ATG-TTATATTATTGTAATTTGGCTTTTTTGTATTATATAAAATATA-TGAATTTGTTTATTTT-TGTAAAGATGCAGTTAAAACAATATGCAAAGGTCAAAG-GTGTCAATTTAAGGAGATGTGACAGCAGGATAATAAGCCACTG-ACTTTATGTCATTCAAAAATGTTAGGTCGTGTTGTTGGTAAGATATGTG-CGTGTTTAATGTACAGT---TA---AATAA-GAATAA---TTGTT--TATATGTCTCCCTAGGTTTGTCATATAATGTTGGTGATG-----ATATAGTATT---------GT-----------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----------TCTGATGTCTACAATA-----CA-AA-ATATATTGTTCAA-----AATCAATA--T----TGGTGAGAG----------TGG-----TTT---------TAAACAAAATCATTT-AGCAAAAT----TTAGT-A-A-AATA-GTA-T-T-C-GTCGAC-CAGTAT--------TAG---T--ATGTCAATA---AT---GATA-T-TTTTAATTAACATAT------------------CT----ATGTA---------ATATC--AGTATGTGAATT---GT---------TACACG---TAATTGATCAGATTGTATCT----GCATTTGAAAGCTTTTGTCC-AAAATGATGCTACTTTTGTTAACAACGATTTTCGGTTTGTATTTAATAAA-TC-TATAAACTTTACCGTACTTGGTCGTCCGGTGTAAT---ATGTTTGAATATATGCAACTCTTATTTGATTGTAGATTGGACAA----ACAATGATAAAATT-GATGTAGGTCCTTGATGACGTGATTACAA-A-CAA---AC---AACCGTTATGTACGGGTATGGACTAGTTCAGA-----C-----ATGAAATGTTCTGTAATGACGTGTTGGTCGGCAACGCCATAGGGCTAATCCTGAAGTG--CAGACTATATA-TCTGATTACTTC-AGAA-TAACCCTTTACAACGTAAAGTAGATGTTGATCATGTGATCACCGTGTTTGCGTCAT--GCAAATGCAGAAACCTAGAGATTTTCTAAAGTGAC-----------------TTTCCACATGGCATCACATATGAACACTCCTCATCAGTACTGTATG
gi|5 : GATTTATATAAAACTGAAATCATTCTCTTCATGATCTTAGTCCAGTACATAATGGTACGCTTTTTAGAAAGCACAGATATAGA-A----A-----CTTCAAAACACAAAG---------ATGACATTACCTGATTACAACTT--AA-------GAGTTTGATACATTGGAAAGAGAGTTATATAGAATAGAGAAAAAAAATTTTTTGTAAATATATATATTTATC-TTAACAAGGGAAA-CTA-TTATATTATTGACGTTT----TTTTTGTATTATATAAAA-ATA-TGAATTGGTTTATTTT-TGTAAATATGCAATAAAAAAGATAGGCAAATATCAAAG-GTTTCAATTTAAGGATATGTGATAGCAGGATAATTTGCCATGG-ACTTTGTGTCATTCAGAAATGATAGGTCGTTATGTTGGTAAGATATGTG-CGAGTTTAATGTAGAGTTAGTA---AATAA-G---AA---TTGTC--TATATGTCTTTTCAGGTTTGTCATATAATATTGGTGATG-----ATATAATATT---------ATNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACAAACATTTTTAATGCATGCAA----------TCTGATGTCTACAATA-----TA-AA-ATATATAGTTCTA-----AATAAATA--T----TATTGAGCG----------TGG-----TTT---------TAAACAAAATCATTT-TGCAAAAT----CTAGT-A-A-AATA-ATA-T-T-G-AACGAG-CAGTAT--------TAG---T--ATATAAATA---AT---GATA-T-CTTTAATTAACATAT------------------CT----ATGTA---------CTATCATAGTATGTGCATT---GT---------TACACG---TAATTTATCAGATTGTATCT----GCATTTGAAAATTTTTGTCC-AAAATGATGCTAATTATGTTGACAACGGTTTTC
gi|2 : ATTTATACAAAACTGAATTCTGTTGCTTTGTGATCTTAATCAGATATATCATCGAACGCTATTTAGAAATCACATATATAGG-A----AATCTACCTTAAAATATAAAACATTCTATAATGACATAACCTGATTACAACTTTTAATACATGGGAGTTTA-TACATTGGAAAGAGAGCTATATAGAATAGAGAAAA-TA--TATTTGTTAATATATAT-TTTATC-TTCACAAGGGAGG-ATG-CTATATTATTGTAATTGGATTTTTCTTTTTTACATAAAAAGTA-TGAATTGGTTTATTTT-TGTATAGATGCAGTTAAAAAGATATGCAAATGTCAATTTGTGTCAACTTAAGGAGATGCGATTGCAGGATAATTAGCCATGG-ACTTTGTGTCATTTAGTAATGAAAGGTCGTGTTGTTGTTAAGATATGTG-CGTGTTTAATGTAGAGT---TAGTAAATAA-GAAC------TGTTGATATATATATCC--AGATTTGTCATATAATGTTGGTGATG-----ATATAATATTTTNNNNNNNNN-----------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----------NNNNNTGTCTACAATA-----TA-AA-GTATGTAGTTCTA-----AATCAATT--A----TGCTGAGAG----------TGGAGTGGTTT---------TAAACAAAGTCATAT-GGCAAAAT----CTAAT-G-A-AATA-GTA-T-T-C-GTCGAG-AAGTAT--------TAG---T--ATATAGATA---AT---TATA-T-TTTTAATTAACATAT------------------TT----ATGTA---------CTA-------A-GTGAATT---GT---------TATACG---TAATGTATCAGACTGT--CC-----CATTTGAAAGCTTTTGTCC-AAAATGTTGCTAATTTTGTTAACAACGATTTTCGGTTTGTATTTAATAAA-TC-CATAAACTTTACCATACTTGGTCGTCGTGTGTAAT---ATGTTTGTATATATTCATCTCTTATTTGATTGTA--------AA----A----GATAAAATT-CATAAAGGTTATTGTTGACGTGATTACAG-A-TAATCTAA---AATCGTTATGTACGGGTATGGAATCATTCAGACTGTTC-----ATGAAACGTTCCGAAATGACGAGTTGAACGGCAACGTTATAGGGCTAATCCTAAAATC--AAGACTATATA-TCTGATTAC----------------TTACAACATAACAAAGATGTTGTTCGTATATTCAAAGTGTTTGCGTTAT--GCAAATGCACAAA----------------------------------------TTGCA--TTGCGGCACATATGAACAATCCTCATCAGTACTGTATGt
gi|3 : ATTTATCCAAAATTTAATTCAGTTGCTTCATG------------TACATAATGAAATGCCTTTTAGAAATCACAGATTTAGG-A----A-----CCTCGAAATATAAAG---------ATGACATTACCTGATTACAACTT--AAA------GACTTTAATACATTGGAAAGAGAGTTATATAGAATAGAGAAAAATA--TATTTGTAAATATATAT-TTTATC-TAAACAAGGGAGA-ATG-TTATACTA--GTAAgg
gi|6 : ATTTATACAAAATTGAAGTCTATTGTTTCATGATCTTAGCCCAGTATATAATGGAACGCTCTTTAGAAATCACAGATTTAGG-A----A-----CCTCAAGAAATAAAA---------ATGACATTACCT-------------------------TTAA-TACATTGGAAAGAGAGTTATATAGAATAGAGACAAATT--CATTTGTAAATACATAT-TTTATC-TTAAAAATGGAGG-ATACTTA-ATTATTACAATTAGAA--TATTGCATTGTATAAGAAATA-TGAATTGGTTTATTTA-TGTAAAGATGCAGTT-AAAC--TATGCAATGGCCAAAG-GTGTCAACTTAATGAGATACGATAGCAGCATAATTAGTAATGG-TCTTTGTGTCATTCAGAAATGTTAGGCAG---TGTTGGTAATATATGTA-CGTGTTTAATATAGAGT---CAT--AATAACG---AA---TTGTT--TATATGTCTCTACGGGTTTGTCATATACTGTTGGTGATG-----CTCTTATATT---------GTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAACATTTTTTATGCATGTAC----------TCTGATGTCTGCAATT-----TA-AA-ACATATAGTTCTA-----AATCAATA--T----TGGTGAGAG----------TGG-----TTT---------TAAACAAAATaaaatatgcaaaggtcaaaggtgtcaattcaaggagatgtgatagcaggataattagccatggactttgtgtcattcagaaatgttagattgtgcttttggtaagatatgtgcgtgtttaatgtagagtaagtaaacaagaattgttaatatgtctctcctggtttgtcatataatgttggtgatgatataatattatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacattttttaatatgtgcaatgtgatgtttacaatataaaatgttttgttctaaatcaatattggtgagagcggttttaaacaaaatcatttttaaacatctagtaaaaaaagtattcgtcgaggagtattagtataaaagtaatgatatttttaattaacatatttatgttctatgtgaattgttacacgtaatttatcagcgtgtgtctgcatttgaaagcttttgtccaaaatgatgctacttttgttaacaacgaatttcggttttaatttaacaaatatataaactgcacttggtcgtccggtgtaatatgtttgtatatatggatctcttatttgattgtagattggacaatgataaaattcatgtaggtccttgatggcgtgactgcaaacacactaaaatggttatgtacgggtatggaatagttcagactgttcatgaaatgttctgtaatgacgagttaatcggcaacaccaaagggctactccagaagtgcagactataaatctaacttcaggatcaccctatacaacgtaacatagatgttgatcgtgtaatcacgtatttgcgtcatgcaaatgcagaaaataagatattgcggagcttatgaacactcctcatcagtactgtatgag
gi|9 : ATTTATATAAAATTGAATTCAGTTGCTTAATGATaa
gi|22 : ATTTATGCAAAACTGAATTCGGTTGCTTCGTGATCTTAATCAAGT--ATAATGGAACGCTCTTTAGAAATCACATATATAGGCAATCTA-----CCTTAAAATATAAAA---------ATGACATTAC---ATTACAACT---------------TTCAATACATTGGAataggagcctcaaaatataaagatgatattacctgattacaagagattgatacattggaaagagggttatatagaatagagaaatatatttaaacaaatacaaagatcaaaggtgtcaattgaaggagatgtgatagcaggataattagccatagactgtgtgtcatttaggaatgttaggtcgtgttgctggtaagacatgtgactgtttaatgtagagctagtaaataagaattgttaatgtctctccaggtttgtcatataattttggtgacgatataatattgtacgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatacaaacattttctaatgtatgcaatctgatgtctacaatatcaaatatatagttctaaatcaatattggtgagagtggttttaaacaaaatcatttcagcaaaatcttgtgaaatagtattcgtcgagcagtattagtatataaataatgatgtgtttaattaacatatctatatact
gi|8 : ATGATCTTAGCTCAGTATATAATAGAACGCTCTTTAGAAATCATATATATAGG-A----AATCTACCTCAAAATATAAAG---------ATGACATTACCTCATTACAACTT--AA-------CAGTTCAATACATTAGAAAGAGAGTAATATAAAGTAGAGACAACAA--TGT-----AATATATGT-TTTATCTTAAACAAGGGAGGAATG-TTATATTATTGTAATTTGAAATTTTTATATTAAATAAAAAATCTTGAATTGGTTTATTTTGTGT-AAGCTGCAGTTAAAAT-ATATGCAAAGGTCAAAG-GTGTCAACTTAATGAGATGAGATAACAAGATAATTAGCTTCGGAACTTCGTGTCATTTAGAACTGACAGGTCGTGTTGTGGGTAAGATAT-TGACATGTTTAATGTAGAGT---TA---GTTAT-TAAGAA---TTGTT--TATATGTCT--CTAG--TTGTCATATAATGTTGGTGATGTTTTAATATTGTACA---------GT-----------ACAGAACAGAAATTTTATTTAGACTTGACCATCAAAACTCATCGTTATATACAAACACTTGTAACGCACGCAA----------TGTGATGTTTACAATA-----T---T-ATACATAGTTCAT-----AATCCATA--T----TGGTAAGAG----------TGG-----TTT---------TGAACAAA
gi|9 : ttGATATAGG-A----G-----CCTCAAAATATAAAG---------ATGATATTACCTGATTAC-------AA-------GAGATTGATACATTGGAAAGAGGGTTATATAGAATAGAG--AAATA--TATT--TAAACAAATA
gi|9 : atttatataaaattgaattcagttgcttaatTTTAAACAA-ATACAAAGATCAAAG-GTGTCAATTGAAGGAGATGTGATAGCAGGATAATTAGCCATAG-ACTGTGTGTCATTTAGGAATGTTAGGTCGTGTTGCTGGTAAGACATGTG-ACTGTTTAATGTAGAGCTAGTA---AATAA-G---AA---TTG-T--TA-ATGTCTCTCCAGGTTTGTCATATAATTTTGGTGACG-----ATATAATATT---------GTACGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATACAAACATTTTCTAATGTATGCAA----------TCTGATGTCTACAATA-----TC-AA-ATATATAGTTCTA-----AATCAATA--T----TGGTGAGAG----------TGG-----TTT---------TAAACAAAATCATTTCAGCAAAAT----CTTGT-G-A-AATA-GTA-T-T-C-GTCGAG-CAGTAT--------TAG---T--ATATAAATA---AT---GATG-T-GTTTAATTAACATAT------------------CT----ATATA---------caaagatcaaaggtgtcaattgaaggagatgtgatagcaggataattagccatagactgtgtgtcatttaggaatgttaggtcgtgttgctggtaagacatgtgactgtttaatgtagagctagtaaataagaattgttaatgtctctccaggtttgtcatataattttggtgacgatataatattgtacgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatacaaacattttctaatgtatgcaatctgatgtctacaatatcaaatatatagttctaaatcaatattggtgagagtggttttaaacaaaatcatttcagcaaaatcttgtgaaatagtattcgtcgagcagtattagtatataaataatgatgtgtttaattaacatatctatatact
gi|3 : atttatataaaattgaattcagttgcttaatgatataggagcctcaaaatataaagatgatattacctgattacaagagattgatacattggaaagagggttatatagaatagagaaatataTAAAA-AATATGCAAAGGTCAAAG-GTGTCAATTCAAGGAGATGTGATAGCAGGATAATTAGCCATGG-ACTTTGTGTCATTCAGAAATGTTAGATTGTGCTTTTGGTAAGATATGTG-CGTGTTTAATGTAGAGTAAGTA---AACAA-GAAT------TGTT--AATATGTCTCTCCTGGTTTGTCATATAATGTTGGTGATG-----ATATAATATT---------AT-----------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACATTTTTTAATATGTGCAA----TGTGATGTTTACAATA-----TA-AA-ATGTTTTGTTCTA-----AATCAATA--T----TGGTGAGAG----------CGG-----TTT---------TAAACAAAATCATTT-TTAAACAT----CTAGT-A-A-AAAAAGTA-T-T-C-GTCGAG-GAGTAT--------TAG---T--ATAAAAGTA---AT---GATA-T-TTTTAATTAACATAT------------------TT----ATGT-------------TC----TATGTGAATT---GT---------TACACG---TAATTTATCAGCGTGTGTCT----GCATTTGAAAGCTTTTGTCC-AAAATGATGCTACTTTTGTTAACAACGAATTTCGGTTTTAATTTAACAAA-TA-TATAAACT-----GCACTTGGTCGTCCGGTGTAAT---ATGTTTGTATATATGGATCTCTTATTTGATTGTAGATTGG--------ACAATGATAAAATT-CATGTAGGTCCTTGATGGCGTGACTGCAA-A-CAC---ACTAAAATGGTTATGTACGGGTATGGAATAGTTCAGACTGTTC-----ATGAAATGTTCTGTAATGACGAGTTAATCGGCAACACCAAAGGGCTACTCCAGAAGTG--CAGACTATAAA-TCTA---ACTTC-AGGA-TCACCCTATACAACGTAACATAGATGTTGATCGTGTAATCA-CGTATTTGCGTCAT--GCAAATGCAGAAA-ATA-AGATATTGCGGAG---C-----------------T-----------------TATGAACACTCCTCATCAGTACTGTATGct
gi|4 : atttatccaaaatttaattcagttgcttcatgtacataatgaaatgccttttagaaatcacagatttaggaacctcgaaatataaagatgacattacctgattacaacttaaagactttaatacattggaaagagagttatatagaatagagaaaaatatatttgtaaatatatattttatctaaacaagggagaatgttatactag-GTGTCAACTTAAGGAGATGTGATTACAGGATAATTAGCCATGG-ACTTTGTGTCATTTAGTAATGTAAGGTCGTGTTGTTGGTAAGATATGTG-CGTGTTTAATGTAGAGC---TA---G-TAA---ATAAACACTGTT--TATATATATCC--AGATTTGTCATATAATGTTGGTGATG-----ATATAATATT---------GT-----------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAAACATTTTTAATGTATGCAATGTGATGTCTACAATA-----TA-AA-GTATGTAGTTCTA-----AATCAATT--A----TGCTGAGAG----------TGGAGTGGTTT---------TAAACAAAATCATAC-GGCAAAAT----CTAAT-G-A-AATA-GTA-T-T-C-GTCGAG-CAGAAT--------TAA---T--ATATAAATA---AT---TATA-T-TTTTAATTAACATAT------------------TT----ATGTA-------------C----TATGTGAATT---GT---------TATACG---TAATTTATCAGACTGTATCT----GTATTTGAAAGCCTTTGTCC-AAAATTTTGCTAATTTTGTTAACAATGGTTTTCGGTTTGTATTTAATAAA-TC-TATAAACTTTACCATACTTGGTCGTTCGGTGTAAT---ATGTTTGTATATATTCATCTCTTATTTGATTGTAGAATGG--------ACAATGATAAAATT-CATATAGGTCATTGTTGACGTGATAACAA-A-TAATCTAA---AATCGTTATGTACGTGTATGAAATTATTCAGACTGTTC-----ATGAAACGTTCTGAAATGACGAGTTTAAGGGCAACGTTATAGGGCTAATCCTAAAATC--CAGACTATATA-TCTAATTACTTC-AGAA-TAACCCTTTACAACGTAACATAGATGTTGATCGTATATTCAAAGTGTTTGCGTCAT--GCAAATGCAGAAA----------------------------------------TTGCA--TTGCGGCACATATGAACAGTTTTCATCAGTACTGTATGag
gi|30 : caatgtcaatttTAAGATATGTG-CGTGTTTGATGTAAAG-------------A-AAGTA----------------GTCTCTCCAGGTTTGTCATATAATGTTGGTGATG-----ATATAgg
gi|12 : tTGATGGTTACAATATTATACATAA-ATATA-------------GATCAATA--T----TGGTGAGAA----------TGG-----TTT---------T---CAAA--------AGC----------TAGT-A-ATAATA-GTA-T-T-TAGTCAAG-CAATAT--------TGG---T--ATATAGATA---AT---CATAGTATTTTAATTAACATAC------------------CT----ATGT------------------GTCTGACAATTTACATG--------TATACA---TAATTTATCAGATTG--TTTGAAAGCATTCGAAAGTTTTTGTCC-AATATGATGCTAa
gi|18 : caaatattttcaatgcatagaatgTGATGT-TACAATA-----TT-AT-ACATA--GTTATG-----AATAAATA--T----CGGTGAGAG----------TGG-----TTT---------TAAACAAAATCATAT-TTCAAAAG----CTAGT-A-ATAATA-GTATT-T-C-GTC-ACGCAATAT--------TAG---T--ATATAAATAATCAT---GGTA---TTTTAATTAACATAT------------------TT----AT--------------------GTATGTGAAAT---GT---------AATATA---TAtagtatacaattataaaactttaccgtcttttcatatacatcttacataattaacagcgataaacaaatgttggtttttatgttttccaatttaatggagaacatattaagtatggtagaattagtcat
gi|14 : atcattttcaatgcatgcactgTGATGTTAACACTA-----TA-AACATAGATAGTTTAATTCTAAATCAATA--TATAGTAGTAAGTGATTATTGTTATGG-----TTA---------TAAACAAAACCATAT-TGCAAAAT----ACAAT-A-ATAATA-CTA-T-TGT-GTCATG-CAATAT--------TAT---T--ATTGAAATA---CT---GATA---TTTTATTTGACATTT------------------CT----ATGT-----------T---------TGTGGTAT---GT---------TATTCG---TTATTCATCA-AT--TATCT----GCATTTCAAAGTTTTTGTTTAAAAATG-TGCTGATTTTGTTTTCAA-GGTTTT--GTTTttatc
gi|13 : tacacagaaccgagcagaacaaataatacattttatttagacttgagtatcataaaaacaaaatacatgcaatgGATGGTTACAATA-----TT-AT-ACATA--GTTCCA-----AATCAATA--T----TGGTGAGAG----------TGG-----TTT---------TAAACAAAATCGTAT-TGCAAAAT----CTAGT-A-ATAATA-GTA-T-T-C-GTCAAG-CAATAT--------TAG---T--ATATAAATA---ATCATGGTA-T-TTT-AATTAACATAT----------------------------------------------GTATGTGAAAT---GT---------TATACT---TTATTTATCAGATTGTTTCT----GTATTTAAAAGCTTTTGTCC-AATATGATGGAAATATTGTTAACACCGATTTTTGGTTTGTATTTAATAAG-TC-TATAAACTTTACCACACTCGGTTGTTTTTTGTAAA---ATTTTGGTATTTATTCATCTCTTATTTGATTGTAGAtg
gi|11 : aaacattttcaatgcatacagtgaGATGTTTACAATA-----CA-----TACACAGTTTTA-----AACCAATA--TAT--TGATGGGAG----------TGA-----TTTATATCATTTTAAACAAAATCATAT-TGCAAAATCTAATTATT-A-T-AATA-ATA-T-TTC-GCCAAG-CAATAT--------AAG---TTGATG--AATA---AC---TATA-T-CTT-AGTGAACATAT------------------GT----ATGT-------------------T-TATGAAAT---GG---------TATACA---CAATTTATCGGATTGTTTCT----GCATTTGAAAGCGTTTATCC-AAAATGATGCTAATTTTGTTAACAAGGATTTTCAATTTGTATT---TAAA-CCATATAAATGTTACTATAATTAGTCGCCTTGTGCAGT---ATGTTTGTATATATCCATCTCTTATTTGATTGTAGAAAGGACAATGATGTAATGATA
gi|27 : aacatgtgcaaagcctgcaatgaATGGTTACAATA-----TT-AT-ACATA--GATCTA-----AATCAATA--G----TG-TAAATT----------TGG-----TTT---------TAAAAAAAATTATAT-TGCAAAAT----GTAGT-ATC-AATA-GTA-T-T-ctagtcatttctttcatttcagtgt
gi|21 : tgttATA-----CATAC-ATGTA--GTTCTA-----AATCAATA--T----TGATGATAG----------TGG-----TTT---------Tt
gi|16 : gaacagaacagaacagaaattttatttttcgagacatgagcatcatcgtcaaagacaaacatttcaatgcatgcaatgtgacagttacaatattGTTCTA-----AATCAATA--T----TGGTATGAG----------TAG-----TTT---------TAAACAAAATCATAT-TTCAAAAG----CTGGT-A-GTAATA-GAA-T-T-C-GTCAAG-CAATATAAATATAATAGAAAT--ATATAAATT---ATCT-GGTA-T-TTT-GATTAACATAT------------------AT----ATGTA------------------TA---GAAAT---GT---------TATACA---TC-TTTATCAGAGTGTTTCT----GCATTTGAAA-CTTCTGTCC-AATATGATGCTAATTTTGTTAATAACGATTT-CGGTTTGTATTTAGTAAG-TC-TATCAACTTTACCATACTCGATCGTCCGGTG
gi|10 : caTCTA-----AATCAATA--TAT--TAACGAGGG----------CGA-----ATTA--------TAAACAAAATCATAT-CGCAATAT----CCAAT-A-ATAGTA-ATA-TCT-C-GTCAAC-CAATAT--------TAT---T--ATATAAATG---AT---AATA-T-TTTTAGTTAACATATTAATGCATGAAATGTCATCTTA--ATGTAGATATTTTCATATC---GTGTGTAACTT---GTACTTTTTATTACCCAATCTAATGCATTTG-TTGTAAAT----TCGTTTCGATACTTTTGTTC-GAA-TGATACTTAATTTGTTAACAATGACTT-------GTATTTAACAAG-TC-TATAAACTGTCCCATATTTAGTCGTCTAGTGTAATAACATGTTGGTTTATATTCGTCTCTTATTTTATTGTAGTTAGGACAA----GCAATGATAAAATG-AATG
gi|23 : cacatagaCAATACAT----CAGTGAGAT----------TGA-----TTTCATTTTTTGTAAACAAAATCAT---------AT----T--GT-------TA-GAA-------GTCAAG-CAATAG--------TAA---T--ATATGAACA---AA---GATA-T--TTTAGTTTACATAT------------------TTATTCATGTA---------ATATaatgcatgtatattgtagtaaggacaaacaat
gi|7 : aaGTTAGAG----------TGG-----TTT---------TAA-CAAAATCATTT-TGCAAAAT----CTTGT-A-A-AATA-GTA-T-T-C-GTCGAG-CAGTAT--------TAG---T--ATATAAATA---AT---GATA-T-TTTTAatatatatatatatttc
gi|32 : GTAAGAG----------TGG-----TTT---------TAAACAAAATCATAT-TGCAAAAT----CTAATAA-A-AAAA-GTA-T-T-tcagattctatctcatttaaaagcttttgtccaaaatgacgctaattatgttaacaacgattttcggtatgtatttaatagatctataaactttacaaacttggtcggtcggtgtaatatgtttgtatatattcatctcttatttgattgtagattggacaaaccatgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacaaactaaaatcgttatgtacgggtatggaatagatcagtctggtcatgaaacgttctgtaatgacaggttggttggcaacgctttaatcctgtagtgcagactatatatctgattacttcagaataacgctttataatgcaacgtagctgttgatcgtgtaatcaccgtgtttgcgtcataaaaaaatgcagaaaactagagattttctaaagtgactttccgcattgcggcacaaatgatcactcctaataagtactgtatgggt
gi|7 : GCA---------GTATT--AGTATATAAATA---AT---------GATATT---T--TT-ATCAGATTCTATCT-----CATTTAAAAGCTTTTGTCC-AAAATGACGCTAATTATGTTAACAACGATTTTCGGTATGTATTTAATAGA-TC-TATAAACTTTACAA-ACTTGGTCGGTCGGTGTAAT---ATGTTTGTATATATTCATCTCTTATTTGATTGTAGATTGGACAA----ACCATGAt
gi|28 : gttagagtggttttaacaaaatcattttgcaaaatcttgtaaaatagtattcgtcgaTTTTGTTGG----GATTT-CGGGTAGTAATTA-TAAACTC-TATAAATTGTACGATAATTGGTCGTCTAGTGTGAT---ATATTTGTATATAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacaaactaaaatcgttatgtacgggtatggaatagatcagtctggtcatgaaacgttctgtaatgacaggttggttggcaacgctttaatcctgtagtgcagactatatatctgattacttcagaataacgctttataatgcaacgtagctgttgatcgtgtaatcaccgtgtttgcgtcataaaaaaatgcagaaaactagagattttctaaagtgactttccgcattgcggcacaaatgatcactcctaataagtactgtatgggt
gi|19 : ATAAAATTCGAC--ACGTCATC-ATGACGT-ATT-CAACATCAA---GCTAAAATCGTTATG-A-----ATGAAATAGTTCAGA-----CTGTTTATGAACTGTTCTGTAATG
gi|15 : ttggtcgccatgccttgtattcccatttccattccggtaagttaatgttaagatCAG-A-CAA---ACTAAAATCGTTATGTTCGGGTATGAAATAGTTCAGA-----CTGTTCATGGAATGTTCTGTAATGACCAGTTGGTCGGCAACACCATAGGGCTAATCCTGAAGTG--CGGACTATAT---CAGATTACTTC-AGAA-TCACACTGTACAACATAACATAGATGTTAATCGTGTAATCAACGTGTTTGCATCAC--GAAAATGCAGAAAACTACAGTGTCTCTAAAGTGACTTATGAAATATTCTACTTTTCCACATTGCGGCACGTATGAACAATCCTCAACAATttctaaacttaaaaaa
gi|7 : AA-A-CAA---ACTAAAATCGTTATGTACGGGTATGGAATAGATCAGT-----CTGGTCATGAAACGTTCTGTAATGACAGGTTGGTTGGCAACGCT------TTAATCCTGTAGTG--CAGACTATATA-TCTGATTACTTC-AGAA-TAACGCTTTATAATGCAACGTAGCTGTTGATCGTGTAATCACCGTGTTTGCGTCATAAAAAAATGCAGAAAACTAGAGATTTTCTAAAGTGAC-----------------TTTCCGCATTGCGGCACAAATGATCACTCCTAATAAGTACTGTATG
gi|29 : gttagagtggttttaacaaaatcattttgcaaaatcttgtaaaatagtattcgtcgagcagtattagtatataaataatgatatttttatcagattctatctcatttaaaagcttttgtccaaaatgacgctaattatgttaacaacgattttcggtatgtatttaatagatctataaactttacaaacttggtcggtcggtgtaatatgtttgtatatattcatctcttatttgattgtagattggacaaaccatgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGACGAGTTGTATGGCAACGCCATTGTGCTAGTCCTGAAGTG--CAGAC--CATA-TCTGATTACATC-AGAC-TCACCCTGTACAACGggt
gi|3 : ATAGGG-TGATCCTGAAGT---TAGATT-TATAGTCTG--CACTTCTGGAG-TAGCCCTTT
gi|4 : atttatccaaaatttaattcagttgcttcatgtacataatgaaatgccttttagaaatcacagatttaggaacctcgaaatataaagatgacattacctgattacaacttaaagactttaatacattggaaagagagttatatagaatagagaaaaatatatttgtaaatatatattttatctaaacaagggagaatgttatactagtaaaaaatatgcaaaggtcaaaggtgtcaattcaaggagatgtgatagcaggataattagccatggactttgtgtcattcagaaatgttagattgtgcttttggtaagatatgtgcgtgtttaatgtagagtaagtaaacaagaattgttaatatgtctctcctggtttgtcatataatgttggtgatgatataatattatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacattttttaatatgtgcaatgtgatgtttacaatataaaatgttttgttctaaatcaatattggtgagagcggttttaaacaaaatcatttttaaacatctagtaaaaaaagtattcgtcgaggagtattagtataaaagtaatgatatttttaattaacatatttatgttctatgtgaattgttacacgtaatttatcagcgtgtgtctgcatttgaaagcttttgtccaaaatgatgctacttttgttaacaacgaatttcggttttaatttaacaaatatataaactgcacttggtcgtccggtgtaatatgtttgtatatatggatctcttatttgattgtagattggacaatgataaaattcatgtaggtccttgatggcgtgactgcaaacacactaaaatggttatgtacgggtatggaatagttcagactgttcatgaaatgttctgtaatgacgagttaatcggcaacaccAGGGTTA-TTCTGAAGTAATTAGA-TATATAGTCTGG--ATTTT-AGGATTAGCCC--TATAACGTacaacgtaacatagatgttgatcgtgtaatcacgtatttgcgtcatgcaaatgcagaaaataagatattgcggagcttatgaacactcctcatcagtactgtatgag
gi|24 : caatgtcaatttgtgtcaacttaaggagatgtgattacaggataattagccatggactttgtgtcatttagtaatgtaaggtcgtgttgttggtaagatatgtgcgtgtttaatgtagagctagtaaataaacactgtttatatatatccagatttgtcatataatgttggtgatgatataatattgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcaaacatttttaatgtatgcaatgtgatgtctacaatataaagtatgtagttctaaatcaattatgctgagagtggagtggttttaaacaaaatcatacggcaaaatctaatgaaatagtattcgtcgagcagaattaatatataaataattatatttttaattaacatatttatgtactatgtgaattgttatacgtaatttatcagactgtatctgtatttgaaagcctttgtccaaaattttgctaattttgttaacaatggttttcggtttgtatttaataaatctataaactttaccatacttggtcgttcggtgtaatatgtttgtatatattcatctcttatttgattgtagaatggacaatgataaaattcatataggtcattgttgacgtgataacaaataatctaaaatcgttatgtacgtgtatgaaattattcagactgttcatgaaacgttctgaaatgacgagtttaagggca-----------------TTTCCGCATTACGGCACATATGAACAATTTTCATCAttacaacgtaacatagatgttgatcgtatattcaaagtgtttgcgtcatgcaaatgcagaaattgcattgcggcacatatgaacagttttcatcagtactgtatggg
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|17 ): AATGTTTGAGTTAATTTTTTTATAGACTAGAACAGAAATTCTATTTAGATTGAGCTCAACAGCAGCTTACCATACACAATGCATGCAATGCGATGTTTACAAAACATACAATTCTAGACCAATTACTATGTTAAATAATTTTTATGGCTTTTAAACGGTCATGCTGCATAACTAAGATTATATATTTCGTCAAAGTGAAATAACAACAGAAATAATAAATAAC
Unaligned ( gi|20 ): AAGTTTTATGTAGATATTTGCAAAATATTATCCAAATTGATGTACGTTTTATTGATTTGTTTATTAATAAGAAAAGTATATATTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTC
Unaligned ( gi|25 ): ATACACAATGCTAGGTCAATACATGTATATTGGCGAAAGAGGTTTCATTGATTTGTAACAAAATCATACTGCAGAATCTAATACGATTATATATTT
Unaligned ( gi|26 ): ATACACAATGCTAGGTCAATACATGTATATTGGCGAAAGAGGTTTCATTGATTTGTAACAAAATCATACTGCAGAATCTAATACGATTATATATTT
Unaligned ( gi|31 ): ACAAACATTTTCAGTGTATGCAATGTAATAGTTACACTATTATACATATCAATGAATTAAATTAGTGGTT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111
lowQualScore : 2222222222 222222222 222222222222 111 11 22222 33333333 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 1111 1111111111111 11111 11111111111111111111 1111 222222222222222222 5555555555555555555 111111 11111111 111 66666 111111111111111111111111111111111111111111111
lowQualScore : 1 1 0 1 5 8888888888 000000000 2 0 555555555555 1 33 77 1 6 6 6 6 1 444 8 8 0 8 8 0 1 99 5 3 5 1 4 44444 2 55555555 2 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1 66666 2 888 1 3333 4444 44444 22 1 9999999999999 1 66666666 7777777777 00000 66666666666666666666 0 22 2 2222 2 4 2 4 2 444 99999999 444 444 33 444 999 111111111111111111 2 33 4444444444444444444 0 555 111111 3 2 2 3 3 555 4 77777 3 1 4 4 0 0 777 33 77777777 2 111 22 1 1 5 5 0 88888 22 1 4 0 1 99 222222222222222222222222222222222222222222222 3
lowQualScore : . . . . . .......... ......... . . ............ . .. .. . . . . . . ... . . . . . . . .. . . . . . ..... . ........ . ..................................................................................................... . ..... . ... . .... .... ..... .. . ............. . ........ .......... ..... .................... . .. . .... . . . . . ... ........ ... ... .. ... ... .................. . .. ................... . ... ...... . . . . . ... . ..... . . . . . . ... .. ........ . ... .. . . . . . ..... .. . . . . .. ............................................. .
lowQualScore : 0 4 7 7 0 5555555555 000000000 5 1 222222222222 3 33 99 4 7 7 7 7 0 666 0 0 8 0 0 8 7 00 0 1 0 0 4 99999 0 33333333 9 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 0 77777 5 222 0 2222 2222 88888 66 8 7777777777777 7 33333333 6666666666 44444 44444444444444444444 6 88 0 8888 4 0 0 0 5 444 11111111 444 444 44 444 444 111111111111111111 9 99 1111111111111111111 8 444 999999 1 6 5 1 1 888 8 55555 3 0 0 0 7 7 888 77 00000000 2 777 00 0 7 0 0 6 77777 11 7 7 7 6 22 000000000000000000000000000000000000000000000 4
consensus : GATTTATACAAAACTGAATTCGGTTGCTTCGTGATCTTAGTCCAGTACATAATGGAACGCTCTTTAGAAATCACAGATATAGG-A----A-----CCTCAAAATATAAAG---------ATGACATTACCTGATTACAACTT--AA-------GAGTTTAATACATTGGAAAGAGAGTTATATAGAATAGAGAAAAATA--TATTTGTAAATATATAT-TTTATCTTAA-CAAGGGAGGA-TG-TTATATTATTGTAATTTGAN-TTTT-T-GTATTATATAAAAAATAT-GAATTGGTTTATTTT-TGTAAAGATGCAGTTAAAACGATATGCAAAGGTCAAAG-GTGTCAACTTAAGGAGATGCGATAGCAGGATAATTAGCCATGGA-CTTTGTGTCATTCAGAAATGTTAGGTCGTGTTGTTGGTAAGATATGTG-CGTGTTTAATGTAGAG-T-A-GTAAATAA-GAATAATTGTTTATATGTCTCTCCAGGTTTGTCATATAATGTTGGTGATGATATAATATT---------GT-----------AC----------AGAACAGA----A-ATTTTATTT----AGACTTGAGCATCAANANTCATCGTTANA----------TACA-----AACA-TTTTC-AATGCATGCAATGTGATGTTTACAATATAAA-ATACA----TAG-----TTC--TAAATCAA-TA--------T----TG-GTGAGA--------G----------TGG-----TTT---------TA---------AACAAAATCATATT--GCAAAATCTAGT-A--ATAATAGTA-T-T-C-GTCGAGCAGT---AT--------TAG---TATATAAATA---A--T---GATA-T-TTTTAATTAACATA------------------TCT--ATGTA----------TAT----GTATGTGAATT---GT------TAT-ACGTAATTTA-T-CA---GATTGTATCT----GCATTTGAAAGCTTTTGTCC-AAAATGATGCTAATTTTGTTAACAACGATTTTCGGTTTGTATTTAATAAA-TC-TATAAACTTTACCATACTTGGTCGTCCGGTGTAATA---TGTTTGTATATATTCATCTCTTATTTGATTGTAGATTGGACAA----ACAATGATAAAATTCATGNAGGTCAT---TGNTGACGTGATTACAA-A-CAAACTAAAATCGTTATGTACGGGTATGGAATAGTTCAGACTGT----TCATGAAACGTTCTGTAATGACGAGTTGGNCGGCAACGCCATAGGGCTAATCCTGAAGTGCAGACTATATATCTGATTACTTCAGAATNACCCTTTACAACGTAACGTAGATGTTGATCGTGTAATCAACGTGTTTGCGTCAT--GCAAATGCAGAAAACTA-AGATTTTCTAAAGTGAC-----------------TTTCCGCATTGCGGCACATATGAACANTCCTCATCAGTACTGTATG
Reference ( family-452 ) : GATTTATACAAAACTGAATTCNGTTGCTTCGTGATCTTAGTCCAGTATATAATGGAACGCTCTTTAGAAATCACAGATATAGG-A----A-----CCTCAAAATATAAAG---------ATGACATTACCTGATTACAACTT--AA-------GAGTTTAATACATTGGAAAGAGAGTTATATAGAATAGAGAAAAATA--TATTTGTAAATATATAT-TTTATCTTAA-CAAGGGAGGA-TG-TTATATTATTGTAATTNGAA-TTTT-T-GTATTATATAAAAAATAT-GAATTGGTTTATTTT-TGTAAAGATGCAGTTAAAACGATATGCAAAGGTCAAAG-GTGTCAACTTAAGGAGATGCGATAGCAGGATAATTAGCCATGGA-CTTTGTGTCATTCAGAAATGNTAGGTCGTGTTGTTGGTAAGATATGTG-CGTGTTTAATGTAGAG-T-A-GTAAATAA-GAATAATTGTTTATATGTCTCTCCAGGTTTGTCATATAATGTTGGTGATGATATAATATT---------GT-----------AC----------AGAACAGA----A-ATTTTATTT----AGACTTGACCATCAAAACTCATCGTTANN----------TANA-----AACA-TTTNT-AATGCATGCAATNTGATGTTTACAATATAAA-ATATA----TAG-----TTC--TAAATCAA-TA--------T----TG-GTGAGA--------G----------TGG-----TTT---------TA---------AACAAAATCATATT--GCAAAATCTAGT-A--ATAATAGTA-T-T-C-GTCGAGCAGT---AT--------TAG---TATATAAATA---A--T---GATA-T-TTTTAATTAACATA------------------TCT--ATGTA----------TATC---GTATGTGAATT---GT------TAT-ACGTAATTTA-T-CA---GATTGTATCT----GCATTTGAAAGCTTTTGTCC-AAAATGATGCTAATTTTGTTAACAACGATTTTCGGTTTGTATTTAATAAA-TC-TATAAACTTTACCATACTTGGTCGTCCGGTGTAATA---TGTTTGTATATATTCATCTCTTATTTGATTGTAGATTGGACAA----ACAATGATAAAATTCATGTAGGTCAT---TGNTGACGTGATTACAA-A-CAAACTAAAATCGTTATGTACGGGTATGGAATAGTTCAGACTGTTCTGTCATGAAACGTTCTGTAATGACGAGTTGANCGGCAACGCCATAGGGCTAATCCTGAAGTGCAGACTATATATCTGATTACTTCAGAATAACCCTTTACAACGTAACATAGATGTTGATCGTGTAATCAACGTGTTTGCGTCAT--GCAAATGCAGAAAACTA-AGATTTTCTAAAGTGAC-----------------TTTCCGCATTGCGGCACATATGAACAATCCTCATCAGTACTGTATG
gi|1 : GATTTATATAAAATTGAATTCGGTTGCGCCATGATCTTAGTCCAGTACATAATGGAACGCTATTTAAAAATCACAGATATATG-A----A-----CCTCAAAATATAAAG---------ATGACATTACCTGATTACAACTT--AA-------GAGTTAAATACATTGGAAAGAGAGTTATATAGAAAAGAGAAAAAGA--TATTTGTAAATATATAT-TTTATCTAAA-CAAGGGAGGA-TG-TTATATTATTGTAATTTGGC-TTTT-TTGTATTATATAAAATATAT-GAATTTGTTTATTTT-TGTAAAGATGCAGTTAAAACAATATGCAAAGGTCAAAG-GTGTCAATTTAAGGAGATGTGACAGCAGGATAATAAGCCACTGA-CTTTATGTCATTCAAAAATGTTAGGTCGTGTTGTTGGTAAGATATGTG-CGTGTTTAATGTACAG-T----TAAATAA-GAATAATTGTTTATATGTCTCCCTAGGTTTGTCATATAATGTTGGTGATGATATAGTATT---------GT-----------NN----------NNNNNNNN----N-NNNNNNNNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNNN----------NNNN-----NNNN-NNNNN-NNNNNNNNNNNTCTGATGTCTACAATACAAA-ATATA----TTG-----TTC--AAAATCAA-TA--------T----TG-GTGAGA--------G----------TGG-----TTT---------TA---------AACAAAATCATTTA--GCAAAATTTAGT-A--A-AATAGTA-T-T-C-GTCGACCAGT---AT--------TAG---TATGTCAATA---A--T---GATA-T-TTTTAATTAACATA------------------TCT--ATGTAA---------TATCA--GTATGTGAATT---GT------TAC-ACGTAATTGA-T-CA---GATTGTATCT----GCATTTGAAAGCTTTTGTCC-AAAATGATGCTACTTTTGTTAACAACGATTTTCGGTTTGTATTTAATAAA-TC-TATAAACTTTACCGTACTTGGTCGTCCGGTGTAATA---TGTTTGAATATATGCAACTCTTATTTGATTGTAGATTGGACAA----ACAATGATAAAATTGATGTAGGTCCT---TGATGACGTGATTACAA-A-CAAAC---AACCGTTATGTACGGGTATGGACTAGTTCAGAC---------ATGAAATGTTCTGTAATGACGTGTTGGTCGGCAACGCCATAGGGCTAATCCTGAAGTGCAGACTATATATCTGATTACTTCAGAATAACCCTTTACAACGTAAAGTAGATGTTGATCATGTGATCACCGTGTTTGCGTCAT--GCAAATGCAGAAACCTAGAGATTTTCTAAAGTGAC-----------------TTTCCACATGGCATCACATATGAACACTCCTCATCAGTACTGTATG
gi|10 : ACA----TAG-----ATC--TAAATCAA-TA--------TAT--TA-ACGAGG--------G----------CGA-----ATTA--------TA---------AACAAAATCATATC--GCAATATCCAAT-A--ATAGTAATA-TCT-C-GTCAACCAAT---AT--------TAT---TATATAAATG---A--T---AATA-T-TTTTAGTTAACATATTAATGCATGAAATGTCATCTTAATGTAGATATTTTCATATC---GTGTGTAACTT---GTACTTTTTATTACCCAATCTAATGCATTTG-TTGTAAAT----TCGTTTCGATACTTTTGTTC-GAA-TGATACTTAATTTGTTAACAATGACTT-------GTATTTAACAAG-TC-TATAAACTGTCCCATATTTAGTCGTCTAGTGTAATAACATGTTGGTTTATATTCGTCTCTTATTTTATTGTAGTTAGGACAA----GCAATGATAAAATGAATGAATG-CATGTATATTGTAGTAAGGACAA-A-CAA
gi|11 : c-----AACA-TGTGC-AAAGCCTGCAATGAGATGTTTACAATACA----TACA----CAG-----TTT--TAAACCAA-TA--------TAT--TG-ATGGGA--------G----------TGA-----TTTATATCATTTTA---------AACAAAATCATATT--GCAAAATCTAATTATTATAATAATA-T-TTC-GCCAAGCAAT---AT--------AAG---TTGATGAATA---A--C---TATA-T-CTT-AGTGAACATA------------------TGT--ATGTT----------TAT----------GAAAT---GG------TAT-ACACAATTTA-T-CG---GATTGTTTCT----GCATTTGAAAGCGTTTATCC-AAAATGATGCTAATTTTGTTAACAAGGATTTTCAATTTGTATT---TAAA-CCATATAAATGTTACTATAATTAGTCGCCTTGTGCAGTA---TGTTTGTATATATCCATCTCTTATTTGATTGTAGAAAGGACAATGATGTAATGATAt
gi|12 : A-----AATA-TTTTC-AATGCATAGAATGTGATGGTTACAATATTA---TACA----TAA-----ATA--TAGATCAA-TA--------T----TG-GTGAGA--------A----------TGG-----TTT---------T---------------------------CAAAAGCTAGT-A--ATAATAGTA-T-T-TAGTCAAGCAAT---AT--------TGG---TATATAGATA---A--T---CATAGTATTTTAATTAACATA------------------CCT--ATGT------------------GTCTGACAATTTACATG-----TAT-ACATAATTTA-T-CA---GATTG--TTTGAAAGCATTCGAAAGTTTTTGTCC-AATATGATGCTActagtcatttctttcatttcagtgt
gi|13 : cA-----AACA-TTTTC-AATGCATACAGTGAGATGGTTACAATATTA---TACA----TAG-----TTC--CAAATCAA-TA--------T----TG-GTGAGA--------G----------TGG-----TTT---------TA---------AACAAAATCGTATT--GCAAAATCTAGT-A--ATAATAGTA-T-T-C-GTCAAGCAAT---AT--------TAG---TATATAAATA---A--TCATGGTA-T-TTT-AATTAACATA------------------T--------------------------GTATGTGAAAT---GT------TAT-ACTTTATTTA-T-CA---GATTGTTTCT----GTATTTAAAAGCTTTTGTCC-AATATGATGGAAATATTGTTAACACCGATTTTTGGTTTGTATTTAATAAG-TC-TATAAACTTTACCACACTCGGTTGTTTTTTGTAAAA---TTTTGGTATTTATTCATCTCTTATTTGATTGTAGAtagtatacaattataaaactttaccgtcttttcatatacatcttacataattaacagcgataaacaaatgttggtttttatgttttccaatttaatggagaacatattaagtatggtagaattagtcat
gi|14 : C----------AGAACAAATAATACATTTTATTT----AGACTTGAGTATCA-------------------------TAAA-----AACA-A-----AATACATGCAATGTGATGTTAACACTATAAACATAGA----TAGTTTAATTC--TAAATCAA-TA--------TATAGTA-GTAAGT--------GATTATTGTTATGG-----TTA---------TA---------AACAAAACCATATT--GCAAAATACAAT-A--ATAATACTA-T-TGT-GTCATGCAAT---AT--------TAT---TATTGAAATA---C--T---GATA---TTTTATTTGACATT------------------TCT--ATGTT----------TGTG---GTA-------T---GT------TAT-TCGTTATTCA-T-CA----AT--TATCT----GCATTTCAAAGTTTTTGTTTAAAAATG-TGCTGATTTTGTTTTCAA-GGTTTT--GTTT
gi|15 : tacacagaaccgagCAG-A-CAAACTAAAATCGTTATGTTCGGGTATGAAATAGTTCAGACTGTTC----ATGGAATGTTCTGTAATGACCAGTTGGTCGGCAACACCATAGGGCTAATCCTGAAGTGCGGACTATAT--CAGATTACTTCAGAATCACACTGTACAACATAACATAGATGTTAATCGTGTAATCAACGTGTTTGCATCAC--GAAAATGCAGAAAACTACAGTGTCTCTAAAGTGACTTATGAAATATTCTACTTTTCCACATTGCGGCACGTATGAACAATCCTCAACAATtg
gi|16 : AG-----TTC--TAAATCAA-TA--------T----TG-GTATGA--------G----------TAG-----TTT---------TA---------AACAAAATCATATT--TCAAAAGCTGGT-A--GTAATAGAA-T-T-C-GTCAAGCAAT---ATAAATATAATAGAAATATATAAATT---ATCT---GGTA---TTTTGATTAACATA------------------TAT--ATGTA----------TA-----------GAAAT---GT------TAT-ACAT-CTTTA-T-CA---GAGTGTTTCT----GCATTTGAAA-CTTCTGTCC-AATATGATGCTAATTTTGTTAATAACGA-TTTCGGTTTGTATTTAGTAAG-TC-TATCAACTTTACCATACTCGATCGTCCGGTG
gi|17 : c----------AGAACAGA----A-ATTCTATTT----AGA-TTGAGC-TCAACAG-CAGC-TTACC-----------ATA-----CACA--------ATGCATGCAATGCGATGTTTAC-----AAA-ACATA----CAA-----TTC--TAGACCAATTA--------C----TATGTTAAATAATTTTTA----------TGGC----TTT---------TA---------AAC--GGTCATGCT--GCATAA-CTAA--G--ATTATA-TATT-T-C-GTCAA--AGTGAAAT--------AAC---AACAGAAATA---A--T---AA
gi|18 : aatgtttgagttaatttttttatagactCA-TTTTC-AATGCATGCACTGTGATGTT-ACAATATTA---TACA----TAG-----TTA--TGAATAAA-TA--------T----CG-GTGAGA--------G----------TGG-----TTT---------TA---------AACAAAATCATATT--TCAAAAGCTAGT-A--ATAATAGTATT-T-C-GTCACGCAAT---AT--------TAG---TATATAAATAATCA--T---GGTA---TTTTAATTAACATA------------------TTT--AT--------------------GTATGTGAAAT---GT------AAT-ATATA--TTA-T-Cataac
gi|19 : atATAAAATTCG-ACACGTCAT---C-ATGACGT-ATT-CAACATCAAGCTAAAATCGTTATG-A-----ATGAAATAGTTCAGACTGT----TTATGAACTGTTCTGTAATG
gi|2 : ttggtcgccatgccttgtattcccatttccattccggtaagttaatgttaagatATTTATACAAAACTGAATTCTGTTGCTTTGTGATCTTAATCAGATATATCATCGAACGCTATTTAGAAATCACATATATAGG-A----AATCTACCTTAAAATATAAAACATTCTATAATGACATAACCTGATTACAACTTTTAATACATGGGAGTTTA-TACATTGGAAAGAGAGCTATATAGAATAGAGAAAA-TA--TATTTGTTAATATATAT-TTTATCTTCA-CAAGGGAGGA-TG-CTATATTATTGTAATTGGAT-TTTTCT-TTTTTACATAAAAAGTAT-GAATTGGTTTATTTT-TGTATAGATGCAGTTAAAAAGATATGCAAATGTCAATTTGTGTCAACTTAAGGAGATGCGATTGCAGGATAATTAGCCATGGA-CTTTGTGTCATTTAGTAATGAAAGGTCGTGTTGTTGTTAAGATATGTG-CGTGTTTAATGTAGAG-TTA-GTAAATAA-GAAC---TGTTGATATATATATCCAGATTTGTCATATAATGTTGGTGATGATATAATATTTTNNNNNNNNN-----------NN----------NNNNNNNN----N-NNNNNNNNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNNN----------NNNN-----NNNN-NNNNN-NNNNNNNNNNNNNNNNTGTCTACAATATAAA-GTATG----TAG-----TTC--TAAATCAA-TT--------A----TG-CTGAGA--------G----------TGGAGTGGTTT---------TA---------AACAAAGTCATATG--GCAAAATCTAAT-G--A-AATAGTA-T-T-C-GTCGAGAAGT---AT--------TAG---TATATAGATA---A--T---TATA-T-TTTTAATTAACATA------------------TTT--ATGTA----------C-------TAAGTGAATT---GT------TAT-ACGTAATGTA-T-CA---GACTGT--CC-----CATTTGAAAGCTTTTGTCC-AAAATGTTGCTAATTTTGTTAACAACGATTTTCGGTTTGTATTTAATAAA-TC-CATAAACTTTACCATACTTGGTCGTCGTGTGTAATA---TGTTTGTATATATTCATCTCTTATTTGATTGTA--------AA----A----GATAAAATTCATAAAGGTTAT---TGTTGACGTGATTACAG-A-TAATCTAAAATCGTTATGTACGGGTATGGAATCATTCAGACTGT----TCATGAAACGTTCCGAAATGACGAGTTGAACGGCAACGTTATAGGGCTAATCCTAAAATCAAGACTATATATCTGATTAC--------------TTACAACATAACAAAGATGTTGTTCGTATATTCAAAGTGTTTGCGTTAT--GCAAATGCACAA--------ATT----------------------------------GCATTGCGGCACATATGAACAATCCTCATCAGTACTGTATGttctaaacttaaaaaa
gi|21 : -----------AC----------AGAACAGA----A-ATTTTATTTTTCGAGACATGAGCATCA-------TCGTCAAA----------GACA-----AACA-TTTC--AATGCATGCAATGTGACAGTTACAATATTAT-ACATACATGTAG-----TTC--TAAATCAA-TA--------T----TG-ATGATA--------G----------TGG-----TTT---------Tgg
gi|22 : gaacagaATTTATGCAAAACTGAATTCGGTTGCTTCGTGATCTTAATCAAG--TATAATGGAACGCTCTTTAGAAATCACATATATAGGCAATCTA-----CCTTAAAATATAAAA---------ATGACATTAC---ATTACAACT---------------TTCAATACATTGGA
gi|23 : CAA-TACA------T----CA-GTGAGA--------T----------TGA-----TTTCATTTTTTGTA---------AACAAAATCATATT--G------TTAG--A--A---------------GTCAAGCAAT---AG--------TAA---TATATGAACA---A--A---GATA---TTTTAGTTTACATA------------------TTT--ATTCA----------TGTA---ATATAT
gi|24 : aa-----------------TTTCCGCATTACGGCACATATGAACAATTTTCATCAatatatatatatttc
gi|25 : acgtgagtgcaatgaaacgcatcaaaaactatctgcgttcaacaattagttccgacttaagaaaacttctact-ATACA----CAA-----TGC--TAGGTCAA-TACATGTATAT----TG-GCGAAA--------G----------AGG-----TTT---------CATTGATTTGTAACAAAATCATACT--GCAGAATCTAAT-ACGATTATA-TA-T-T-
gi|26 : -ATACA----CAA-----TGC--TAGGTCAA-TACATGTATAT----TG-GCGAAA--------G----------AGG-----TTT---------CATTGATTTGTAACAAAATCATACT--GCAGAATCTAAT-ACGATTATA-TA-T-T-t
gi|27 : TGTTATGGTTACAATATTA---TACA----TAG-----ATC--TAAATCAA-TA--------G----TG--TAAAT--------T----------TGG-----TTT---------TA---------AAAAAAATTATATT--GCAAAATGTAGT-A--TCAATAGTA-T-T-t
gi|28 : TTTTGTTGG----GATTT-CGGGTAGTAATTA-TAAACTC-TATAAATTGTACGATAATTGGTCGTCTAGTGTGATA---TATTTGTATATAt
gi|29 : GACGAGTTGTATGGCAACGCCATTGTGCTAGTCCTGAAGTGCAGAC--CATATCTGATTACATCAGACTCACCCTGTACAACG
gi|3 : ATTTATCCAAAATTTAATTCAGTTGCTTCATG------------TACATAATGAAATGCCTTTTAGAAATCACAGATTTAGG-A----A-----CCTCGAAATATAAAG---------ATGACATTACCTGATTACAACTT--AAA------GACTTTAATACATTGGAAAGAGAGTTATATAGAATAGAGAAAAATA--TATTTGTAAATATATAT-TTTATCTAAA-CAAGGGAGAA-TG-TTATACTA--GTAA
gi|3 : AGTAAAAA--ATATGCAAAGGTCAAAG-GTGTCAATTCAAGGAGATGTGATAGCAGGATAATTAGCCATGGA-CTTTGTGTCATTCAGAAATGTTAGATTGTGCTTTTGGTAAGATATGTG-CGTGTTTAATGTAGAG-T-AAGTAAACAA-GAAT---TGTTAATATGTCTCTCCTGGTTTGTCATATAATGTTGGTGATGATATAATATT---------AT-----------NN----------NNNNNNNN----N-NNNNNNNNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNNN----------NNNNNNNNNAACA-TTTTTTAATATGTGCAATGTGATGTTTACAATATAAA-ATGTT----TTG-----TTC--TAAATCAA-TA--------T----TG-GTGAGA--------G----------CGG-----TTT---------TA---------AACAAAATCATTTT--TAAACATCTAGT-A--AAAAAAGTA-T-T-C-GTCGAGGAGT---AT--------TAG---TATAAAAGTA---A--T---GATA-T-TTTTAATTAACATA------------------TTT--ATGT-------------TC----TATGTGAATT---GT------TAC-ACGTAATTTA-T-CA---GCGTGTGTCT----GCATTTGAAAGCTTTTGTCC-AAAATGATGCTACTTTTGTTAACAACGAATTTCGGTTTTAATTTAACAAA-TA-TATAAACT-----GCACTTGGTCGTCCGGTGTAATA---TGTTTGTATATATGGATCTCTTATTTGATTGTAGATTGG--------ACAATGATAAAATTCATGTAGGTCCT---TGATGGCGTGACTGCAA-A-CACACTAAAATGGTTATGTACGGGTATGGAATAGTTCAGACTGT----TCATGAAATGTTCTGTAATGACGAGTTAATCGGCAACACCAAAGGGCTACTCCAGAAGTGCAGACTATAAATCTA---ACTTCAGGATCACCCTATACAACGTAACATAGATGTTGATCGTGTAATC-ACGTATTTGCGTCAT--GCAAATGCAGAAAA-TA-AGAT-------------------------------------ATTGCGGAGCTTATGAACACTCCTCATCAGTACTGTATGaaaatatgcaaaggtcaaaggtgtcaattcaaggagatgtgatagcaggataattagccatggactttgtgtcattcagaaatgttagattgtgcttttggtaagatatgtgcgtgtttaatgtagagtaagtaaacaagaattgttaatatgtctctcctggtttgtcatataatgttggtgatgatataatattatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacattttttaatatgtgcaatgtgatgtttacaatataaaatgttttgttctaaatcaatattggtgagagcggttttaaacaaaatcatttttaaacatctagtaaaaaaagtattcgtcgaggagtattagtataaaagtaatgatatttttaattaacatatttatgttctatgtgaattgttacacgtaatttatcagcgtgtgtctgcatttgaaagcttttgtccaaaatgatgctacttttgttaacaacgaatttcggttttaatttaacaaatatataaactgcacttggtcgtccggtgtaatatgtttgtatatatggatctcttatttgattgtagattggacaatgataaaattcatgtaggtccttgatggcgtgactgcaaacacactaaaatggttatgtacgggtatggaatagttcagactgttcatgaaatgttctgtaatgacgagttaatcggcaacaccaaagggctactccagaagtgcagactataaatctaacttcaggatcaccctatacaacgtaacatagatgttgatcgtgtaatcacgtatttgcgtcatgcaaatgcagaaaataagatattgcggagcttatgaacactcctcatcagtactgtatgag
gi|30 : atttatccaaaatttaattcagttgcttcatgtacataatgaaatgccttttagaaatcacagatttaggaacctcgaaatataaagatgacattacctgattacaacttaaagactttaatacattggaaagagagttatatagaatagagaaaaatatatttgtaaatatatattttatctaaacaagggagaatgttatactTAAGATATGTG-CGTGTTTGATGTAAAG------------A-AAGTA-----------GTCTCTCCAGGTTTGTCATATAATGTTGGTGATGATATAAag
gi|31 : tACA-----AACA-TTTTC-AGTGTATGCAATGTAATAGTTACACTAT--T-ATACA----TA-------TCAATGAATTAA--A--------T----TA-GTG
gi|32 : -GTAAGA--------G----------TGG-----TTT---------TA---------AACAAAATCATATT--GCAAAATCTAAT-A--AAAAAAGTA-T-T-gtt
gi|4 : -GTGTCAACTTAAGGAGATGTGATTACAGGATAATTAGCCATGGA-CTTTGTGTCATTTAGTAATGTAAGGTCGTGTTGTTGGTAAGATATGTG-CGTGTTTAATGTAGAGCT-A-GTAAATAA---ACA-CTGTTTATATATATC--CAGATTTGTCATATAATGTTGGTGATGATATAATATT---------GT-----------NN----------NNNNNNNN----N-NNNNNNNNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCA-----AACA-TTTTT-AATGTATGCAATGTGATGTCTACAATATAAA-GTATG----TAG-----TTC--TAAATCAA-TT--------A----TG-CTGAGA--------G----------TGGAGTGGTTT---------TA---------AACAAAATCATACG--GCAAAATCTAAT-G--A-AATAGTA-T-T-C-GTCGAGCAGA---AT--------TAA---TATATAAATA---A--T---TATA-T-TTTTAATTAACATA------------------TTT--ATGTA----------C-------TATGTGAATT---GT------TAT-ACGTAATTTA-T-CA---GACTGTATCT----GTATTTGAAAGCCTTTGTCC-AAAATTTTGCTAATTTTGTTAACAATGGTTTTCGGTTTGTATTTAATAAA-TC-TATAAACTTTACCATACTTGGTCGTTCGGTGTAATA---TGTTTGTATATATTCATCTCTTATTTGATTGTAGAATGG--------ACAATGATAAAATTCATATAGGTCAT---TGTTGACGTGATAACAA-A-TAATCTAAAATCGTTATGTACGTGTATGAAATTATTCAGACTGT----TCATGAAACGTTCTGAAATGACGAGTTTAAGGGCAACGTTATAGGGCTAATCCTAAAATCCAGACTATATATCTAATTACTTCAGAATAACCCTTTACAACGTAACATAGATGTTGATCGTATATTCAAAGTGTTTGCGTCAT--GCAAATGCAGAA--------ATT----------------------------------GCATTGCGGCACATATGAACAGTTTTCATCAGTACTGTATGt
gi|5 : caatgtcaatttGATTTATATAAAACTGAAATCATTCTCTTCATGATCTTAGTCCAGTACATAATGGTACGCTTTTTAGAAAGCACAGATATAGA-A----A-----CTTCAAAACACAAAG---------ATGACATTACCTGATTACAACTT--AA-------GAGTTTGATACATTGGAAAGAGAGTTATATAGAATAGAGAAAAAAAATTTTTTGTAAATATATATATTTATCTTAA-CAAGGGAAAC-TA-TTATATTATTGACGTTT----TTTT-T-GTATTATAT-AAAAATAT-GAATTGGTTTATTTT-TGTAAATATGCAATAAAAAAGATAGGCAAATATCAAAG-GTTTCAATTTAAGGATATGTGATAGCAGGATAATTTGCCATGGA-CTTTGTGTCATTCAGAAATGATAGGTCGTTATGTTGGTAAGATATGTG-CGAGTTTAATGTAGAGTT-A-GTAAATAA-G---AATTGTCTATATGTCTTTTCAGGTTTGTCATATAATATTGGTGATGATATAATATT---------ATNNNNNNNNNN-NN----------NNNNNNNN----N-NNNNNNNNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNNN----------TACA-----AACA-TTTTT-AATGCATGCAATCTGATGTCTACAATATAAA-ATATA----TAG-----TTC--TAAATAAA-TA--------T----TA-TTGAGC--------G----------TGG-----TTT---------TA---------AACAAAATCATTTT--GCAAAATCTAGT-A--A-AATAATA-T-T-G-AACGAGCAGT---AT--------TAG---TATATAAATA---A--T---GATA-T-CTTTAATTAACATA------------------TCT--ATGTAC---------TATCATAGTATGTGCATT---GT------TAC-ACGTAATTTA-T-CA---GATTGTATCT----GCATTTGAAAATTTTTGTCC-AAAATGATGCTAATTATGTTGACAACGGTTTTCgg
gi|6 : ATTTATACAAAATTGAAGTCTATTGTTTCATGATCTTAGCCCAGTATATAATGGAACGCTCTTTAGAAATCACAGATTTAGG-A----A-----CCTCAAGAAATAAAA---------ATGACATTACCT--------------------------TTAATACATTGGAAAGAGAGTTATATAGAATAGAGACAAATT--CATTTGTAAATACATAT-TTTATCTTAA-AAATGGAGGA-TACTTA-ATTATTACAATTAGAA--TAT-T-GCATTGTATAAGAAATAT-GAATTGGTTTATTTA-TGTAAAGATGCAGTT-AAAC--TATGCAATGGCCAAAG-GTGTCAACTTAATGAGATACGATAGCAGCATAATTAGTAATGGT-CTTTGTGTCATTCAGAAATGTTAGGCAG---TGTTGGTAATATATGTA-CGTGTTTAATATAGAG-T-C-AT-AATAACG---AATTGTTTATATGTCTCTACGGGTTTGTCATATACTGTTGGTGATGCTCTTATATT---------GTNNNNNNNNNNNNN----------NNNNNNNN----N-NNNNNNNNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNNN----------NNGA-----AACA-TTTTT-TATGCATGTACTCTGATGTCTGCAATTTAAA-ACATA----TAG-----TTC--TAAATCAA-TA--------T----TG-GTGAGA--------G----------TGG-----TTT---------TA---------AACAAAATt
gi|7 : -GTTAGA--------G----------TGG-----TTT---------TA---------A-CAAAATCATTTT--GCAAAATCTTGT-A--A-AATAGTA-T-T-C-GTCGAGCAGT---AT--------TAG---TATATAAATA---A--T---GATA-T-TTTTAaa
gi|7 : GTA----------T-TA---GTATATAAATA---AT------GAT-AT-T--TTTA-T-CA---GATTCTATCT-----CATTTAAAAGCTTTTGTCC-AAAATGACGCTAATTATGTTAACAACGATTTTCGGTATGTATTTAATAGA-TC-TATAAACTTTACAA-ACTTGGTCGGTCGGTGTAATA---TGTTTGTATATATTCATCTCTTATTTGATTGTAGATTGGACAA----ACCATGAtcagattctatctcatttaaaagcttttgtccaaaatgacgctaattatgttaacaacgattttcggtatgtatttaatagatctataaactttacaaacttggtcggtcggtgtaatatgtttgtatatattcatctcttatttgattgtagattggacaaaccatgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacaaactaaaatcgttatgtacgggtatggaatagatcagtctggtcatgaaacgttctgtaatgacaggttggttggcaacgctttaatcctgtagtgcagactatatatctgattacttcagaataacgctttataatgcaacgtagctgttgatcgtgtaatcaccgtgtttgcgtcataaaaaaatgcagaaaactagagattttctaaagtgactttccgcattgcggcacaaatgatcactcctaataagtactgtatgggt
gi|7 : gttagagtggttttaacaaaatcattttgcaaaatcttgtaaaatagtattcgtcgagcaAA-A-CAAACTAAAATCGTTATGTACGGGTATGGAATAGATCAGTCTG----GTCATGAAACGTTCTGTAATGACAGGTTGGTTGGCAACGCT------TTAATCCTGTAGTGCAGACTATATATCTGATTACTTCAGAATAACGCTTTATAATGCAACGTAGCTGTTGATCGTGTAATCACCGTGTTTGCGTCATAAAAAAATGCAGAAAACTAGAGATTTTCTAAAGTGAC-----------------TTTCCGCATTGCGGCACAAATGATCACTCCTAATAAGTACTGTATGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacaaactaaaatcgttatgtacgggtatggaatagatcagtctggtcatgaaacgttctgtaatgacaggttggttggcaacgctttaatcctgtagtgcagactatatatctgattacttcagaataacgctttataatgcaacgtagctgttgatcgtgtaatcaccgtgtttgcgtcataaaaaaatgcagaaaactagagattttctaaagtgactttccgcattgcggcacaaatgatcactcctaataagtactgtatgggt
gi|8 : gttagagtggttttaacaaaatcattttgcaaaatcttgtaaaatagtattcgtcgagcagtattagtatataaataatgatatttttatcagattctatctcatttaaaagcttttgtccaaaatgacgctaattatgttaacaacgattttcggtatgtatttaatagatctataaactttacaaacttggtcggtcggtgtaatatgtttgtatatattcatctcttatttgattgtagattggacaaaccatgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTGATCTTAGCTCAGTATATAATAGAACGCTCTTTAGAAATCATATATATAGG-A----AATCTACCTCAAAATATAAAG---------ATGACATTACCTCATTACAACTT--AA-------CAGTTCAATACATTAGAAAGAGAGTAATATAAAGTAGAGACAACAA--TGT-----AATATATGT-TTTATCTTAAACAAGGGAGGAATG-TTATATTATTGTAATTTGAAATTTT-T-ATATTAAATAAAAAATCTTGAATTGGTTTATTTTGTGTAA-GCTGCAGTTAAAAT-ATATGCAAAGGTCAAAG-GTGTCAACTTAATGAGATGAGATAACAAGATAATTAGCTTCGGAACTTCGTGTCATTTAGAACTGACAGGTCGTGTTGTGGGTAAGATAT-TGACATGTTTAATGTAGAG-TTA-GTTATTAA-GAAT---TGTTTATATGTCTCT--AG--TTGTCATATAATGTTGGTGATGTTTTAATATT---------GT-----------ACAGTAC-----AGAACAGA----A-ATTTTATTT----AGACTTGACCATCAAAACTCATCGTTATA----------TACA-----AACA-CTTGT-AACGCACGCAATGTGATGTTTACAATAT--T-ATACA----TAG-----TTC--ATAATCCA-TA--------T----TG-GTAAGA--------G----------TGG-----TTT---------TG---------AACAAAggt
gi|9 : ttaATTTATATAAAATTGAATTCAGTTGCTTAATGAT
gi|9 : GATATAGG-A----G-----CCTCAAAATATAAAG---------ATGATATTACCTGATTAC-------AA-------GAGATTGATACATTGGAAAGAGGGTTATATAGAATAGAG--AAATA--TATT--TAAACAAATAataggagcctcaaaatataaagatgatattacctgattacaagagattgatacattggaaagagggttatatagaatagagaaatatatttaaacaaatacaaagatcaaaggtgtcaattgaaggagatgtgatagcaggataattagccatagactgtgtgtcatttaggaatgttaggtcgtgttgctggtaagacatgtgactgtttaatgtagagctagtaaataagaattgttaatgtctctccaggtttgtcatataattttggtgacgatataatattgtacgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatacaaacattttctaatgtatgcaatctgatgtctacaatatcaaatatatagttctaaatcaatattggtgagagtggttttaaacaaaatcatttcagcaaaatcttgtgaaatagtattcgtcgagcagtattagtatataaataatgatgtgtttaattaacatatctatatact
gi|9 : atttatataaaattgaattcagttgcttaatTTTAAACAA-ATACAAAGATCAAAG-GTGTCAATTGAAGGAGATGTGATAGCAGGATAATTAGCCATAGA-CTGTGTGTCATTTAGGAATGTTAGGTCGTGTTGCTGGTAAGACATGTG-ACTGTTTAATGTAGAGCT-A-GTAAATAA-G---AATTG-TTA-ATGTCTCTCCAGGTTTGTCATATAATTTTGGTGACGATATAATATT---------GT-----------ACGANNNNNNNNNNNNNNNN----N-NNNNNNNNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNAA----------TACA-----AACATTTTCT-AATGTATGCAATCTGATGTCTACAATATCAA-ATATA----TAG-----TTC--TAAATCAA-TA--------T----TG-GTGAGA--------G----------TGG-----TTT---------TA---------AACAAAATCAT-TTCAGCAAAATCTTGT-G--A-AATAGTA-T-T-C-GTCGAGCAGT---AT--------TAG---TATATAAATA---A--T---GATG-T-GTTTAATTAACATA------------------TCT--ATATA----------caaagatcaaaggtgtcaattgaaggagatgtgatagcaggataattagccatagactgtgtgtcatttaggaatgttaggtcgtgttgctggtaagacatgtgactgtttaatgtagagctagtaaataagaattgttaatgtctctccaggtttgtcatataattttggtgacgatataatattgtacgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatacaaacattttctaatgtatgcaatctgatgtctacaatatcaaatatatagttctaaatcaatattggtgagagtggttttaaacaaaatcatttcagcaaaatcttgtgaaatagtattcgtcgagcagtattagtatataaataatgatgtgtttaattaacatatctatatact
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): AAGTTTTATGTAGATATTTGCAAAATATTATCCAAATTGATGTACGTTTTATTGATTTGTTTATTAATAAGAAAAGTATATATTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTC
Alignments
lowQualScore : 111111111111111111111111111111111111111111111
lowQualScore : 2222222222 222222222 222222222222 11 111 11 22222 33333333 444444444444444444444444444444444 4444444444444444444444444444444444444444 111111 1111111111111 11111 11111111111111111111 1111 4444444444444444444444444444 11111111111 11111111111 33333333 111 111111111111111111111111111111111111111111111
lowQualScore : 4 1 0 0 1 5 8888888888 000000000 2 0 555555555555 1 33 77 1 6 6 6 6 1 11 666 0 8 8 0 99 5 3 5 0 4 44444 2 55555555 2 666666666666666666666666666666666 888888 7777 1 1 3333333333333333333333333333333333333333 66666 1 5 999999 22 44444 22 1 9999999999999 1 66666666 7777777777 00000 66666666666666666666 0 22 2 2222 2 4 2 4 2 444 99999999 444 444 33 444 666 888888 4444444444444444444444444444 2 33 2 888888 2 4 55555555555 7777 7777 55555555555 3 1 4 4 0 0 777 33 44444444 1 111 22 1 1 5 5 0 11 5 1 3 0 1 0 99 222222222222222222222222222222222222222222222 1
lowQualScore : . . . . . . .......... ......... . . ............ . .. .. . . . . . . .. ... . . . . .. . . . . . ..... . ........ . ................................. ...... .... . . ........................................ ..... . . ...... .. ..... .. . ............. . ........ .......... ..... .................... . .. . .... . . . . . ... ........ ... ... .. ... ... ...... ............................ . .. . ...... . . ........... .... .... ........... . . . . . . ... .. ........ . ... .. . . . . . .. . . . . . . .. ............................................. .
lowQualScore : 0 4 7 4 7 0 5555555555 000000000 5 1 222222222222 3 33 99 4 7 7 7 7 0 88 888 8 0 0 8 00 0 1 0 8 4 99999 0 33333333 9 333333333333333333333333333333333 777777 7777 5 8 7777777777777777777777777777777777777777 77777 3 0 000000 66 88888 66 8 7777777777777 7 33333333 6666666666 44444 44444444444444444444 6 88 0 8888 4 0 0 0 5 444 11111111 444 444 44 444 111 111111 6666666666666666666666666666 9 55 7 444444 5 8 88888888888 1111 1111 88888888888 3 0 0 0 7 7 888 77 00000000 0 777 00 0 7 0 0 6 44 0 7 0 7 6 7 22 000000000000000000000000000000000000000000000 0
consensus : GATTTATACAAAACTGAATTCGGTTGCTTCGTGATCTTAGTCCAGTACATAATGGAACGCTCTTTAGAAATCACAGATATAGG-A----A-----CCTCAAAATATAAAG---------ATGACATTACCTGATTACAACTT--AA-------GAGTTTAATACATTGGAAAGAGAGTTATATAGAATAGAGAAAAATA--TATTTGTAAATATATAT-TTTATCTTAA-CAAGGGAGGA-TG-TTATATTATTGTAATTTGAN-TTTT-T-GTATTATATAAAAAATAT-GAATTGGTTTATTTT-TGTAAAGATGCAGTTAAAACGATATGCAAAGGTCAAAG-GTGTCAACTTAAGGAGATGCGATAGCAGGATAATTAGCCATGGA-CTTTGTGTCATTCAGAAATGTTAGGTCGTGTTGTTGGTAAGATATGTG-CGTGTTTAATGTAGAG-T-A-GTAAATAA-GAATAATTGTTTATATGTCTCTCCAGGTTTGTCATATAATGTTGGTGATGATATAATATT---------GT----------AC----------AGAACAGA----A-ATTTTATTT----AGACTTGAGCATCAANANTCATCGTTAN-A----------TAC-----------A-----AACATTTTC-AATGCATGCAATGTGATGTTTACAATAT-A-AA-ATACAT--AG-----TTC--TAAATCAA-TA--------T----TG-GTGAGA--------G----------TGG-----TTT---------TA---------AACAAAATCATATT--GCAAAATCTAGT-A--ATAATAGTA-T-T-C-GTCGAGCAGT---AT--------TAG---TATATAAATA---A--T---GATA-T-TTTTAATTAACATATCT----ATGT-A-T---AT----G------T-------ATGT-GA-ATTGTTATAC-----GTAATTTATCAGATTGTATC-----------T----GCATTTG----AAA-----------GCTTTTGTCC-AAAATGATGCTAATTTTGTTAACAACGATTTTCGGTTTGTATTTAATAAA-TC-TATAAACTTTACCATACTTGGTCGTCCGGTGTAATA---TGTTTGTATATATTCATCTCTTATTTGATTGTAGATTGGACAA----ACAATGATAAAATTCATGNAGGTCAT---TGNTGACGTGATTACAA-A-CAAACTAAAATCGTTATGTACGGGTATGGAATAGTTCAGACTGTTCATGAAACGTTCTGTAATGACGAGTTGGNCGGCAACGCCATAGGGCTAATCCTGAAGTGCAGACTATATATCTGATTACTTCAGAATNACCCTTTACAACGTAACGTAGATGTTGATCGTGTAATCAACGTGTTTGCGTCAT--GCAAATGCAGAAAACTA-AGATTTTCTAAAGTGAC-----------------TTTCCGCATTGCGGCACATATGAACANTCCTCATCAGTACTGTATG
Reference ( family-452 ) : GATTTATACAAAACTGAATTCGGTTGCTTCGTGATCTTAGTCCAGTACATAATGGAACGCTCTTTAGAAATCACAGATATAGG-A----A-----CCTCAAAATATAAAG---------ATGACATTACCTGATTACAACTT--AA-------GAGTTTAATACATTGGAAAGAGAGTTATATAGAATAGAGAAAAATA--TATTTGTAAATATATAT-TTTATCTTAA-CAAGGGAGGA-TG-TTATATTATTGTAATTTGAN-TTTT-T-GTATTATATAAAAAATAT-GAATTGGTTTATTTT-TGTAAAGATGCAGTTAAAACGATATGCAAAGGTCAAAG-GTGTCAACTTAAGGAGATGCGATAGCAGGATAATTAGCCATGGA-CTTTGTGTCATTCAGAAATGTTAGGTCGTGTTGTTGGTAAGATATGTG-CGTGTTTAATGTAGAG-T-A-GTAAATAA-GAATAATTGTTTATATGTCTCTCCAGGTTTGTCATATAATGTTGGTGATGATATAATATT---------GT----------AC----------AGAACAGA----A-ATTTTATTT----AGACTTGAGCATCAANANTCATCGTTAN-A----------TAC-----------A-----AACATTTTC-AATGCATGCAATGTGATGTTTACAATAT-A-AA-ATACAT--AG-----TTC--TAAATCAA-TA--------T----TG-GTGAGA--------G----------TGG-----TTT---------TA---------AACAAAATCATATT--GCAAAATCTAGT-A--ATAATAGTA-T-T-C-GTCGAGCAGT---AT--------TAG---TATATAAATA---A--T---GATA-T-TTTTAATTAACATATCT----ATGT-A-T---AT----G------T-------ATGT-GA-ATTGTTATAC-----GTAATTTATCAGATTGTATC-----------T----GCATTTG----AAA-----------GCTTTTGTCC-AAAATGATGCTAATTTTGTTAACAACGATTTTCGGTTTGTATTTAATAAA-TC-TATAAACTTTACCATACTTGGTCGTCCGGTGTAATA---TGTTTGTATATATTCATCTCTTATTTGATTGTAGATTGGACAA----ACAATGATAAAATTCATGNAGGTCAT---TGNTGACGTGATTACAA-A-CAAACTAAAATCGTTATGTACGGGTATGGAATAGTTCAGACTGTTCATGAAACGTTCTGTAATGACGAGTTGGNCGGCAACGCCATAGGGCTAATCCTGAAGTGCAGACTATATATCTGATTACTTCAGAATNACCCTTTACAACGTAACGTAGATGTTGATCGTGTAATCAACGTGTTTGCGTCAT--GCAAATGCAGAAAACTA-AGATTTTCTAAAGTGAC-----------------TTTCCGCATTGCGGCACATATGAACANTCCTCATCAGTACTGTATG
gi|1 : GATTTATATAAAATTGAATTCGGTTGCGCCATGATCTTAGTCCAGTACATAATGGAACGCTATTTAAAAATCACAGATATATG-A----A-----CCTCAAAATATAAAG---------ATGACATTACCTGATTACAACTT--AA-------GAGTTAAATACATTGGAAAGAGAGTTATATAGAAAAGAGAAAAAGA--TATTTGTAAATATATAT-TTTATCTAAA-CAAGGGAGGA-TG-TTATATTATTGTAATTTGGC-TTTT-TTGTATTATATAAAATATAT-GAATTTGTTTATTTT-TGTAAAGATGCAGTTAAAACAATATGCAAAGGTCAAAG-GTGTCAATTTAAGGAGATGTGACAGCAGGATAATAAGCCACTGA-CTTTATGTCATTCAAAAATGTTAGGTCGTGTTGTTGGTAAGATATGTG-CGTGTTTAATGTACAG-T----TAAATAA-GAATAATTGTTTATATGTCTCCCTAGGTTTGTCATATAATGTTGGTGATGATATAGTATT---------GT----------NN----------NNNNNNNN----N-NNNNNNNNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNN-N----------NNN-----------N-----NNNNNNNNN-NNNNNNNNNNNTCTGATGTCTACAATAC-A-AA-ATATAT--TG-----TTC--AAAATCAA-TA--------T----TG-GTGAGA--------G----------TGG-----TTT---------TA---------AACAAAATCATTTA--GCAAAATTTAGT-A--A-AATAGTA-T-T-C-GTCGACCAGT---AT--------TAG---TATGTCAATA---A--T---GATA-T-TTTTAATTAACATATCT----ATGT-AAT---ATCA--G------T-------ATGT-GA-ATTGTTACAC-----GTAATTGATCAGATTGTATC-----------T----GCATTTG----AAA-----------GCTTTTGTCC-AAAATGATGCTACTTTTGTTAACAACGATTTTCGGTTTGTATTTAATAAA-TC-TATAAACTTTACCGTACTTGGTCGTCCGGTGTAATA---TGTTTGAATATATGCAACTCTTATTTGATTGTAGATTGGACAA----ACAATGATAAAATTGATGTAGGTCCT---TGATGACGTGATTACAA-A-CAAAC---AACCGTTATGTACGGGTATGGACTAGTTCAGA-----CATGAAATGTTCTGTAATGACGTGTTGGTCGGCAACGCCATAGGGCTAATCCTGAAGTGCAGACTATATATCTGATTACTTCAGAATAACCCTTTACAACGTAAAGTAGATGTTGATCATGTGATCACCGTGTTTGCGTCAT--GCAAATGCAGAAACCTAGAGATTTTCTAAAGTGAC-----------------TTTCCACATGGCATCACATATGAACACTCCTCATCAGTACTGTATG
gi|10 : ACAT--AG-----ATC--TAAATCAA-TA--------TAT--TA-ACGAGG--------G----------CGA-----ATTA--------TA---------AACAAAATCATATC--GCAATATCCAAT-A--ATAGTAATA-TCT-C-GTCAACCAAT---AT--------TAT---TATATAAATG---A--T---AATA-T-TTTTAGTTAACATATTA----ATGC-A-TGAAAT----G------TCATCTTAATGTAGATATTTTCATATCGTGTGTAACTTGT-ACTTTTTATTACCCAATCTAAT----GCATTTGTTGTAAATTCGTTTCGATACTTTTGTTC-GAA-TGATACTTAATTTGTTAACAATGACTT-------GTATTTAACAAG-TC-TATAAACTGTCCCATATTTAGTCGTCTAGTGTAATAACATGTTGGTTTATATTCGTCTCTTATTTTATTGTAGTTAGGACAA----GCAATGATAAAATGAATGAATG-CATGTATATTGTAGTAAGGACAA-A-CAA
gi|11 : c-----AACATGTGC-AAAGCCTGCAATGAGATGTTTACAATAC-A-----TACAC--AG-----TTT--TAAACCAA-TA--------TAT--TG-ATGGGA--------G----------TGA-----TTTATATCATTTTA---------AACAAAATCATATT--GCAAAATCTAATTATTATAATAATA-T-TTC-GCCAAGCAAT---AT--------AAG---TTGATGAATA---A--C---TATA-T-CTT-AGTGAACATATGT----ATGT-T-T---AT----G--------------------A-AATGGTATAC-----ACAATTTATCGGATTGTTTC-----------T----GCATTTG----AAA-----------GCGTTTATCC-AAAATGATGCTAATTTTGTTAACAAGGATTTTCAATTTGTATT---TAAA-CCATATAAATGTTACTATAATTAGTCGCCTTGTGCAGTA---TGTTTGTATATATCCATCTCTTATTTGATTGTAGAAAGGACAATGATGTAATGATAt
gi|12 : C-----------A-----AATATTTTC-AATGCATAGAATGTGATGGTTACAATAT----T-ATACAT--AA-----ATA--TAGATCAA-TA--------T----TG-GTGAGA--------A----------TGG-----TTT---------T---------------------------CAAAAGCTAGT-A--ATAATAGTA-T-T-TAGTCAAGCAAT---AT--------TGG---TATATAGATA---A--T---CATAGTATTTTAATTAACATACCT----ATGT-G-T---CT----GACAATTT-------ACAT-G-------TATAC-----ATAATTTATCAGATTG--TT-----------TGAAAGCATTCG----AAA-----------GTTTTTGTCC-AATATGATGCTActagtcatttctttcatttcagtgt
gi|13 : -----------A-----AACATTTTC-AATGCATACAGTGAGATGGTTACAATAT-T-A---TACAT--AG-----TTC--CAAATCAA-TA--------T----TG-GTGAGA--------G----------TGG-----TTT---------TA---------AACAAAATCGTATT--GCAAAATCTAGT-A--ATAATAGTA-T-T-C-GTCAAGCAAT---AT--------TAG---TATATAAATA---A--TCATGGTA-T-TTT-AATTAACATAT-----------------------G------T-------ATGT-GA-AATGTTATAC-----TTTATTTATCAGATTGTTTC-----------T----GTATTTA----AAA-----------GCTTTTGTCC-AATATGATGGAAATATTGTTAACACCGATTTTTGGTTTGTATTTAATAAG-TC-TATAAACTTTACCACACTCGGTTGTTTTTTGTAAAA---TTTTGGTATTTATTCATCTCTTATTTGATTGTAGAtagtatacaattataaaactttaccgtcttttcatatacatcttacataattaacagcgataaacaaatgttggtttttatgttttccaatttaatggagaacatattaagtatggtagaattagtcat
gi|14 : C----------AGAACAAATAATACATTTTATTT----AGACTTGAGTATCA-----------TAA-A----------AAC-----------A-----AA---------ATACATGCAATGTGATGTTAACACTAT-A-AACATAGAT--AGTTTAATTC--TAAATCAA-TA--------TATAGTA-GTAAGT--------GATTATTGTTATGG-----TTA---------TA---------AACAAAACCATATT--GCAAAATACAAT-A--ATAATACTA-T-TGT-GTCATGCAAT---AT--------TAT---TATTGAAATA---C--T---GATA---TTTTATTTGACATTTCT----ATGT-T-T---GT----G----------------GT-A----TGTTATTC-----GTTATTCATCA-AT--TATC-----------T----GCATTTC----AAA-----------GTTTTTGTTTAAAAATG-TGCTGATTTTGTTTTCAA-GGTTTT--GTTT
gi|15 : tacacagaaccgagCAG-A-CAAACTAAAATCGTTATGTTCGGGTATGAAATAGTTCAGACTGTTCATGGAATGTTCTGTAATGACCAGTTGGTCGGCAACACCATAGGGCTAATCCTGAAGTGCGGAC--TATATCAGATTACTTCAGAATCACACTGTACAACATAACATAGATGTTAATCGTGTAATCAACGTGTTTGCATCAC--GAAAATGCAGAAAACTACAGTGTCTCTAAAGTGACTTATGAAATATTCTACTTTTCCACATTGCGGCACGTATGAACAATCCTCAACAATtg
gi|16 : --AG-----TTC--TAAATCAA-TA--------T----TG-GTATGA--------G----------TAG-----TTT---------TA---------AACAAAATCATATT--TCAAAAGCTGGT-A--GTAATAGAA-T-T-C-GTCAAGCAAT---ATAAATATAATAGAAATATATAAATT---ATCT---GGTA---TTTTGATTAACATATAT----ATGT-A-T---A-------------------------GA-AATGTTATAC-----AT-CTTTATCAGAGTGTTTC-----------T----GCATTTG----AAA------------CTTCTGTCC-AATATGATGCTAATTTTGTTAATAACGA-TTTCGGTTTGTATTTAGTAAG-TC-TATCAACTTTACCATACTCGATCGTCCGGTG
gi|17 : c----------AGAACAGA----A-ATTCTATTT----AGA-TTGAGC-TCAACAG-CAGC-TTACCA----------TAC-----------A-------------C-AATGCATGCAATGCGATGTTTACAA----A-AC-ATAC----AA-----TTC--TAGACCAATTA--------C----TATGTTAAATAATTTTTA----------TGGC----TTT---------TA---------AAC--GGTCATGCT--GCATAA-CTAA--G--ATTATA-TATT-T-C-GTCAA--AGTGAAAT--------AAC---AACAGAAATA---A--T---AA
gi|18 : aatgtttgagttaatttttttatagactCATTTTC-AATGCATGCACTGTGATGTT-ACAATAT-T-A---TACAT--AG-----TTA--TGAATAAA-TA--------T----CG-GTGAGA--------G----------TGG-----TTT---------TA---------AACAAAATCATATT--TCAAAAGCTAGT-A--ATAATAGTATT-T-C-GTCACGCAAT---AT--------TAG---TATATAAATAATCA--T---GGTA---TTTTAATTAACATATT------------T---AT----G------T-------ATGT-GA-AATGTAATAT-----ATA--TTATCataac
gi|19 : atATAAAATTCG-ACACGTCAT---C-ATGACGT-ATT-CAACATCAAGCTAAAATCGTTATG-A-----ATGAAATAGTTCAGACTGTTTATGAACTGTTCTGTAATG
gi|2 : ttggtcgccatgccttgtattcccatttccattccggtaagttaatgttaagatATTTATACAAAACTGAATTCTGTTGCTTTGTGATCTTAATCAGATATATCATCGAACGCTATTTAGAAATCACATATATAGG-A----AATCTACCTTAAAATATAAAACATTCTATAATGACATAACCTGATTACAACTTTTAATACATGGGAGTTTA-TACATTGGAAAGAGAGCTATATAGAATAGAGAAAA-TA--TATTTGTTAATATATAT-TTTATCTTCA-CAAGGGAGGA-TG-CTATATTATTGTAATTGGAT-TTTTCT-TTTTTACATAAAAAGTAT-GAATTGGTTTATTTT-TGTATAGATGCAGTTAAAAAGATATGCAAATGTCAATTTGTGTCAACTTAAGGAGATGCGATTGCAGGATAATTAGCCATGGA-CTTTGTGTCATTTAGTAATGAAAGGTCGTGTTGTTGTTAAGATATGTG-CGTGTTTAATGTAGAG-TTA-GTAAATAA-GAAC---TGTTGATATATATATCCAGATTTGTCATATAATGTTGGTGATGATATAATATTTTNNNNNNNNN----------NN----------NNNNNNNN----N-NNNNNNNNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNN-N----------NNN-----------N-----NNNNNNNNN-NNNNNNNNNNNNNNNNTGTCTACAATAT-A-AA-GTATGT--AG-----TTC--TAAATCAA-TT--------A----TG-CTGAGA--------G----------TGGAGTGGTTT---------TA---------AACAAAGTCATATG--GCAAAATCTAAT-G--A-AATAGTA-T-T-C-GTCGAGAAGT---AT--------TAG---TATATAGATA---A--T---TATA-T-TTTTAATTAACATATTT----ATGT-A-C----------------T-------AAGT-GA-ATTGTTATAC-----GTAATGTATCAGACTGT--C-----------C-----CATTTG----AAA-----------GCTTTTGTCC-AAAATGTTGCTAATTTTGTTAACAACGATTTTCGGTTTGTATTTAATAAA-TC-CATAAACTTTACCATACTTGGTCGTCGTGTGTAATA---TGTTTGTATATATTCATCTCTTATTTGATTGTA--------AA----A----GATAAAATTCATAAAGGTTAT---TGTTGACGTGATTACAG-A-TAATCTAAAATCGTTATGTACGGGTATGGAATCATTCAGACTGTTCATGAAACGTTCCGAAATGACGAGTTGAACGGCAACGTTATAGGGCTAATCCTAAAATCAAGACTATATATCTGATTAC--------------TTACAACATAACAAAGATGTTGTTCGTATATTCAAAGTGTTTGCGTTAT--GCAAATGCACAA--------ATT----------------------------------GCATTGCGGCACATATGAACAATCCTCATCAGTACTGTATGttctaaacttaaaaaa
gi|21 : ----------AC----------AGAACAGA----A-ATTTTATTTTTCGAGACATGAGCATCA-------TCGTCAA-A----------GAC-----------A-----AACATTT-C-AATGCATGCAATGTGACAGTTACAATATTATAC-ATACATGTAG-----TTC--TAAATCAA-TA--------T----TG-ATGATA--------G----------TGG-----TTT---------Tgg
gi|22 : gaacagaATTTATGCAAAACTGAATTCGGTTGCTTCGTGATCTTAATCAAGT--ATAATGGAACGCTCTTTAGAAATCACATATATAGGCAATCTA-----CCTTAAAATATAAAA---------ATGACATTAC---ATTACAACT---------------TTCAATACATTGGA
gi|23 : CAA-TACA------T----CA-GTGAGA--------T----------TGA-----TTTCATTTTTTGTA---------AACAAAATCATATT--GT------TAG-------AA------------GTCAAGCAAT---AG--------TAA---TATATGAACA---A--A---GATA-T--TTTAGTTTACATATTTATTCATGTAA-T---AT----A------T-------ATAT-
gi|24 : aa-----------------TTTCCGCATTACGGCACATATGAACAATTTTCATCAatatatatttc
gi|25 : acgtgagtgcaatgaaacgcatcaaaaactatctgcgttcaacaattagttccgacttaagaaaacttctact-ATACAC--AA-----TGC--TAGGTCAA-TACATGTATAT----TG-GCGAAA--------G----------AGG-----TTT---------CATTGATTTGTAACAAAATCATACT--GCAGAATCTAAT-ACGATTATA-TA-T-T-
gi|26 : -ATACAC--AA-----TGC--TAGGTCAA-TACATGTATAT----TG-GCGAAA--------G----------AGG-----TTT---------CATTGATTTGTAACAAAATCATACT--GCAGAATCTAAT-ACGATTATA-TA-T-T-t
gi|27 : TGTTATGGTTACAATAT-T-A---TACAT--AG-----ATC--TAAATCAA-TA--------G----TG--TAAAT--------T----------TGG-----TTT---------TA---------AAAAAAATTATATT--GCAAAATGTAGT-A--TCAATAGTA-T-T-t
gi|28 : TTTTGTTGG----GATTT-CGGGTAGTAATTA-TAAACTC-TATAAATTGTACGATAATTGGTCGTCTAGTGTGATA---TATTTGTATATAt
gi|29 : GACGAGTTGTATGGCAACGCCATTGTGCTAGTCCTGAAGTGCAGAC--CATATCTGATTACATCAGACTCACCCTGTACAACG
gi|3 : ATTTATCCAAAATTTAATTCAGTTGCTTCATG------------TACATAATGAAATGCCTTTTAGAAATCACAGATTTAGG-A----A-----CCTCGAAATATAAAG---------ATGACATTACCTGATTACAACTT--AAA------GACTTTAATACATTGGAAAGAGAGTTATATAGAATAGAGAAAAATA--TATTTGTAAATATATAT-TTTATCTAAA-CAAGGGAGAA-TG-TTATACTA--GTAA
gi|3 : AGTAAAAA--ATATGCAAAGGTCAAAG-GTGTCAATTCAAGGAGATGTGATAGCAGGATAATTAGCCATGGA-CTTTGTGTCATTCAGAAATGTTAGATTGTGCTTTTGGTAAGATATGTG-CGTGTTTAATGTAGAG-T-AAGTAAACAA-GAAT---TGTTAATATGTCTCTCCTGGTTTGTCATATAATGTTGGTGATGATATAATATT---------AT----------NN----------NNNNNNNN----N-NNNNNNNNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNN-N----------NNN-----------NNNNNNAACATTTTTTAATATGTGCAATGTGATGTTTACAATAT-A-AA-ATGTTT--TG-----TTC--TAAATCAA-TA--------T----TG-GTGAGA--------G----------CGG-----TTT---------TA---------AACAAAATCATTTT--TAAACATCTAGT-A--AAAAAAGTA-T-T-C-GTCGAGGAGT---AT--------TAG---TATAAAAGTA---A--T---GATA-T-TTTTAATTAACATATTT----ATGT--------T----C------T-------ATGT-GA-ATTGTTACAC-----GTAATTTATCAGCGTGTGTC-----------T----GCATTTG----AAA-----------GCTTTTGTCC-AAAATGATGCTACTTTTGTTAACAACGAATTTCGGTTTTAATTTAACAAA-TA-TATAAACT-----GCACTTGGTCGTCCGGTGTAATA---TGTTTGTATATATGGATCTCTTATTTGATTGTAGATTGGACAA--------TGATAAAATTCATGTAGGTCCT---TGATGGCGTGACTGCAA-A-CACACTAAAATGGTTATGTACGGGTATGGAATAGTTCAGACTGTTCATGAAATGTTCTGTAATGACGAGTTAATCGGCAACACCAAAGGGCTACTCCAGAAGTGCAGACTATAAATCTA---ACTTCAGGATCACCCTATACAACGTAACATAGATGTTGATCGTGTAATC-ACGTATTTGCGTCAT--GCAAATGCAGAAAA-TA-AGAT-------------------------------------ATTGCGGAGCTTATGAACACTCCTCATCAGTACTGTATGaaaatatgcaaaggtcaaaggtgtcaattcaaggagatgtgatagcaggataattagccatggactttgtgtcattcagaaatgttagattgtgcttttggtaagatatgtgcgtgtttaatgtagagtaagtaaacaagaattgttaatatgtctctcctggtttgtcatataatgttggtgatgatataatattatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacattttttaatatgtgcaatgtgatgtttacaatataaaatgttttgttctaaatcaatattggtgagagcggttttaaacaaaatcatttttaaacatctagtaaaaaaagtattcgtcgaggagtattagtataaaagtaatgatatttttaattaacatatttatgttctatgtgaattgttacacgtaatttatcagcgtgtgtctgcatttgaaagcttttgtccaaaatgatgctacttttgttaacaacgaatttcggttttaatttaacaaatatataaactgcacttggtcgtccggtgtaatatgtttgtatatatggatctcttatttgattgtagattggacaatgataaaattcatgtaggtccttgatggcgtgactgcaaacacactaaaatggttatgtacgggtatggaatagttcagactgttcatgaaatgttctgtaatgacgagttaatcggcaacaccaaagggctactccagaagtgcagactataaatctaacttcaggatcaccctatacaacgtaacatagatgttgatcgtgtaatcacgtatttgcgtcatgcaaatgcagaaaataagatattgcggagcttatgaacactcctcatcagtactgtatgag
gi|30 : atttatccaaaatttaattcagttgcttcatgtacataatgaaatgccttttagaaatcacagatttaggaacctcgaaatataaagatgacattacctgattacaacttaaagactttaatacattggaaagagagttatatagaatagagaaaaatatatttgtaaatatatattttatctaaacaagggagaatgttatactTAAGATATGTG-CGTGTTTGATGTAAAG------------A-AAGTA-----------GTCTCTCCAGGTTTGTCATATAATGTTGGTGATGATATAAag
gi|31 : tAC-----------A-----AACATTTTC-AGTGTATGCAATGTAATAGTTACACTAT----T-ATACAT--A-------TCAATGAATTAA--A--------T----TA-GTG
gi|32 : -GTAAGA--------G----------TGG-----TTT---------TA---------AACAAAATCATATT--GCAAAATCTAAT-A--AAAAAAGTA-T-T-gtt
gi|4 : -GTGTCAACTTAAGGAGATGTGATTACAGGATAATTAGCCATGGA-CTTTGTGTCATTTAGTAATGTAAGGTCGTGTTGTTGGTAAGATATGTG-CGTGTTTAATGTAGAGCT-A-GTAAATAA---ACA-CTGTTTATATATATC--CAGATTTGTCATATAATGTTGGTGATGATATAATATT---------GT----------NN----------NNNNNNNN----N-NNNNNNNNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNTGC-----------A-----AACATTTTT-AATGTATGCAATGTGATGTCTACAATAT-A-AA-GTATGT--AG-----TTC--TAAATCAA-TT--------A----TG-CTGAGA--------G----------TGGAGTGGTTT---------TA---------AACAAAATCATACG--GCAAAATCTAAT-G--A-AATAGTA-T-T-C-GTCGAGCAGA---AT--------TAA---TATATAAATA---A--T---TATA-T-TTTTAATTAACATATTT----ATGT-A-C----------------T-------ATGT-GA-ATTGTTATAC-----GTAATTTATCAGACTGTATC-----------T----GTATTTG----AAA-----------GCCTTTGTCC-AAAATTTTGCTAATTTTGTTAACAATGGTTTTCGGTTTGTATTTAATAAA-TC-TATAAACTTTACCATACTTGGTCGTTCGGTGTAATA---TGTTTGTATATATTCATCTCTTATTTGATTGTAGAATGGACAA--------TGATAAAATTCATATAGGTCAT---TGTTGACGTGATAACAA-A-TAATCTAAAATCGTTATGTACGTGTATGAAATTATTCAGACTGTTCATGAAACGTTCTGAAATGACGAGTTTAAGGGCAACGTTATAGGGCTAATCCTAAAATCCAGACTATATATCTAATTACTTCAGAATAACCCTTTACAACGTAACATAGATGTTGATCGTATATTCAAAGTGTTTGCGTCAT--GCAAATGCAGAA--------ATT----------------------------------GCATTGCGGCACATATGAACAGTTTTCATCAGTACTGTATGt
gi|5 : caatgtcaatttGATTTATATAAAACTGAAATCATTCTCTTCATGATCTTAGTCCAGTACATAATGGTACGCTTTTTAGAAAGCACAGATATAGA-A----A-----CTTCAAAACACAAAG---------ATGACATTACCTGATTACAACTT--AA-------GAGTTTGATACATTGGAAAGAGAGTTATATAGAATAGAGAAAAAAAATTTTTTGTAAATATATATATTTATCTTAA-CAAGGGAAAC-TA-TTATATTATTGACGTTT----TTTT-T-GTATTATAT-AAAAATAT-GAATTGGTTTATTTT-TGTAAATATGCAATAAAAAAGATAGGCAAATATCAAAG-GTTTCAATTTAAGGATATGTGATAGCAGGATAATTTGCCATGGA-CTTTGTGTCATTCAGAAATGATAGGTCGTTATGTTGGTAAGATATGTG-CGAGTTTAATGTAGAGTT-A-GTAAATAA-G---AATTGTCTATATGTCTTTTCAGGTTTGTCATATAATATTGGTGATGATATAATATT---------ATNNNNNNNNNNNN----------NNNNNNNN----N-NNNNNNNNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNN-N----------TAC-----------A-----AACATTTTT-AATGCATGCAATCTGATGTCTACAATAT-A-AA-ATATAT--AG-----TTC--TAAATAAA-TA--------T----TA-TTGAGC--------G----------TGG-----TTT---------TA---------AACAAAATCATTTT--GCAAAATCTAGT-A--A-AATAATA-T-T-G-AACGAGCAGT---AT--------TAG---TATATAAATA---A--T---GATA-T-CTTTAATTAACATATCT----ATGT-ACT---ATCATAG------T-------ATGT-GC-ATTGTTACAC-----GTAATTTATCAGATTGTATC-----------T----GCATTTG----AAA-----------ATTTTTGTCC-AAAATGATGCTAATTATGTTGACAACGGTTTTCgg
gi|6 : ATTTATACAAAATTGAAGTCTATTGTTTCATGATCTTAGCCCAGTATATAATGGAACGCTCTTTAGAAATCACAGATTTAGG-A----A-----CCTCAAGAAATAAAA---------ATGACATTACCT--------------------------TTAATACATTGGAAAGAGAGTTATATAGAATAGAGACAAATT--CATTTGTAAATACATAT-TTTATCTTAA-AAATGGAGGA-TACTTA-ATTATTACAATTAGAA-TATT---GCATTGTATAAGAAATAT-GAATTGGTTTATTTA-TGTAAAGATGCAGTTAAA-C--TATGCAATGGCCAAAG-GTGTCAACTTAATGAGATACGATAGCAGCATAATTAGTAATGGT-CTTTGTGTCATTCAGAAATGTTAGGCAG---TGTTGGTAATATATGTA-CGTGTTTAATATAGAG-T-C-AT-AATAACG---AATTGTTTATATGTCTCTACGGGTTTGTCATATACTGTTGGTGATGCTCTTATATT---------GT----------NN----------NNNNNNNN----N-NNNNNNNNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNN-N----------NNNNNNNNNNNNNGA-----AACATTTTT-TATGCATGTACTCTGATGTCTGCAATTT-A-AA-ACATAT--AG-----TTC--TAAATCAA-TA--------T----TG-GTGAGA--------G----------TGG-----TTT---------TA---------AACAAAATt
gi|7 : -GTTAGA--------G----------TGG-----TTT---------TA---------A-CAAAATCATTTT--GCAAAATCTTGT-A--A-AATAGTA-T-T-C-GTCGAGCAGT---AT--------TAG---TATATAAATA---A--T---GATA-T-TTTTAaa
gi|7 : GT-A-T---TA----G------T-------ATAT-AA-ATAATGATAT------T--TTTATCAGATTCTATC-----------T-----CATTTA----AAA-----------GCTTTTGTCC-AAAATGACGCTAATTATGTTAACAACGATTTTCGGTATGTATTTAATAGA-TC-TATAAACTTTACAA-ACTTGGTCGGTCGGTGTAATA---TGTTTGTATATATTCATCTCTTATTTGATTGTAGATTGGACAA----ACCATGAtcagattctatctcatttaaaagcttttgtccaaaatgacgctaattatgttaacaacgattttcggtatgtatttaatagatctataaactttacaaacttggtcggtcggtgtaatatgtttgtatatattcatctcttatttgattgtagattggacaaaccatgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacaaactaaaatcgttatgtacgggtatggaatagatcagtctggtcatgaaacgttctgtaatgacaggttggttggcaacgctttaatcctgtagtgcagactatatatctgattacttcagaataacgctttataatgcaacgtagctgttgatcgtgtaatcaccgtgtttgcgtcataaaaaaatgcagaaaactagagattttctaaagtgactttccgcattgcggcacaaatgatcactcctaataagtactgtatgggt
gi|7 : gttagagtggttttaacaaaatcattttgcaaaatcttgtaaaatagtattcgtcgagcaAA-A-CAAACTAAAATCGTTATGTACGGGTATGGAATAGATCAGTCTGGTCATGAAACGTTCTGTAATGACAGGTTGGTTGGCAACGCT------TTAATCCTGTAGTGCAGACTATATATCTGATTACTTCAGAATAACGCTTTATAATGCAACGTAGCTGTTGATCGTGTAATCACCGTGTTTGCGTCATAAAAAAATGCAGAAAACTAGAGATTTTCTAAAGTGAC-----------------TTTCCGCATTGCGGCACAAATGATCACTCCTAATAAGTACTGTATGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacaaactaaaatcgttatgtacgggtatggaatagatcagtctggtcatgaaacgttctgtaatgacaggttggttggcaacgctttaatcctgtagtgcagactatatatctgattacttcagaataacgctttataatgcaacgtagctgttgatcgtgtaatcaccgtgtttgcgtcataaaaaaatgcagaaaactagagattttctaaagtgactttccgcattgcggcacaaatgatcactcctaataagtactgtatgggt
gi|8 : gttagagtggttttaacaaaatcattttgcaaaatcttgtaaaatagtattcgtcgagcagtattagtatataaataatgatatttttatcagattctatctcatttaaaagcttttgtccaaaatgacgctaattatgttaacaacgattttcggtatgtatttaatagatctataaactttacaaacttggtcggtcggtgtaatatgtttgtatatattcatctcttatttgattgtagattggacaaaccatgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTGATCTTAGCTCAGTATATAATAGAACGCTCTTTAGAAATCATATATATAGG-A----AATCTACCTCAAAATATAAAG---------ATGACATTACCTCATTACAACTT--AA-------CAGTTCAATACATTAGAAAGAGAGTAATATAAAGTAGAGACAACAA--TGT-----AATATATGT-TTTATCTTAAACAAGGGAGGAATG-TTATATTATTGTAATTTGAAATTTT-T-ATATTAAATAAAAAATCTTGAATTGGTTTATTTTGTGTAA-GCTGCAGTTAAAAT-ATATGCAAAGGTCAAAG-GTGTCAACTTAATGAGATGAGATAACAAGATAATTAGCTTCGGAACTTCGTGTCATTTAGAACTGACAGGTCGTGTTGTGGGTAAGATAT-TGACATGTTTAATGTAGAG-TTA-GTTATTAA-GAAT---TGTTTATATGTCTCT--AG--TTGTCATATAATGTTGGTGATGTTTTAATATT---------GT----------ACAGTAC-----AGAACAGA----A-ATTTTATTT----AGACTTGACCATCAAAACTCATCGTTAT-A----------TAC-----------A-----AACACTTGT-AACGCACGCAATGTGATGTTTACAATAT----T-ATACAT--AG-----TTC--ATAATCCA-TA--------T----TG-GTAAGA--------G----------TGG-----TTT---------TG---------AACAAAggt
gi|9 : ttaATTTATATAAAATTGAATTCAGTTGCTTAATGAT
gi|9 : GATATAGG-A----G-----CCTCAAAATATAAAG---------ATGATATTACCTGATTAC-------AA-------GAGATTGATACATTGGAAAGAGGGTTATATAGAATAGAG--AAATA--TATT--TAAACAAATAataggagcctcaaaatataaagatgatattacctgattacaagagattgatacattggaaagagggttatatagaatagagaaatatatttaaacaaatacaaagatcaaaggtgtcaattgaaggagatgtgatagcaggataattagccatagactgtgtgtcatttaggaatgttaggtcgtgttgctggtaagacatgtgactgtttaatgtagagctagtaaataagaattgttaatgtctctccaggtttgtcatataattttggtgacgatataatattgtacgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatacaaacattttctaatgtatgcaatctgatgtctacaatatcaaatatatagttctaaatcaatattggtgagagtggttttaaacaaaatcatttcagcaaaatcttgtgaaatagtattcgtcgagcagtattagtatataaataatgatgtgtttaattaacatatctatatact
gi|9 : atttatataaaattgaattcagttgcttaatTTTAAACAA-ATACAAAGATCAAAG-GTGTCAATTGAAGGAGATGTGATAGCAGGATAATTAGCCATAGA-CTGTGTGTCATTTAGGAATGTTAGGTCGTGTTGCTGGTAAGACATGTG-ACTGTTTAATGTAGAGCT-A-GTAAATAA-G---AATTG-TTA-ATGTCTCTCCAGGTTTGTCATATAATTTTGGTGACGATATAATATT---------GT----------ACGANNNNNNNNNNNNNNNN----N-NNNNNNNNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNA-A----------TAC-----------A-----AACATTTTCTAATGTATGCAATCTGATGTCTACAATAT-C-AA-ATATAT--AG-----TTC--TAAATCAA-TA--------T----TG-GTGAGA--------G----------TGG-----TTT---------TA---------AACAAAATCAT-TTCAGCAAAATCTTGT-G--A-AATAGTA-T-T-C-GTCGAGCAGT---AT--------TAG---TATATAAATA---A--T---GATG-T-GTTTAATTAACATATCT----ATAT-A-caaagatcaaaggtgtcaattgaaggagatgtgatagcaggataattagccatagactgtgtgtcatttaggaatgttaggtcgtgttgctggtaagacatgtgactgtttaatgtagagctagtaaataagaattgttaatgtctctccaggtttgtcatataattttggtgacgatataatattgtacgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatacaaacattttctaatgtatgcaatctgatgtctacaatatcaaatatatagttctaaatcaatattggtgagagtggttttaaacaaaatcatttcagcaaaatcttgtgaaatagtattcgtcgagcagtattagtatataaataatgatgtgtttaattaacatatctatatact
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): AAGTTTTATGTAGATATTTGCAAAATATTATCCAAATTGATGTACGTTTTATTGATTTGTTTATTAATAAGAAAAGTATATATTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTC
Alignments
lowQualScore : 111111111111111111111111111111111111111111111
lowQualScore : 2222222222 222222222 222222222222 11 111 11 22222 33333333 444444444444444444444444444444444 4444444444444444444444444444444444444444 111111 1111111111111 11111 11111111111111111111 1111 4444444444444444444444444444 11111111111 11111111111 33333333 111 111111111111111111111111111111111111111111111
lowQualScore : 4 1 0 0 1 5 8888888888 000000000 2 0 555555555555 1 33 77 1 6 6 6 6 1 11 666 0 8 8 0 99 5 3 5 0 4 44444 2 55555555 2 666666666666666666666666666666666 888888 7777 1 1 3333333333333333333333333333333333333333 66666 1 5 999999 22 44444 22 1 9999999999999 1 66666666 7777777777 00000 66666666666666666666 0 22 2 2222 2 4 2 4 2 444 99999999 444 444 33 444 666 888888 4444444444444444444444444444 2 33 2 888888 2 4 55555555555 7777 7777 55555555555 3 1 4 4 0 0 777 33 44444444 1 111 22 1 1 5 5 0 11 5 1 3 0 1 0 99 222222222222222222222222222222222222222222222 1
lowQualScore : . . . . . . .......... ......... . . ............ . .. .. . . . . . . .. ... . . . . .. . . . . . ..... . ........ . ................................. ...... .... . . ........................................ ..... . . ...... .. ..... .. . ............. . ........ .......... ..... .................... . .. . .... . . . . . ... ........ ... ... .. ... ... ...... ............................ . .. . ...... . . ........... .... .... ........... . . . . . . ... .. ........ . ... .. . . . . . .. . . . . . . .. ............................................. .
lowQualScore : 0 4 7 4 7 0 5555555555 000000000 5 1 222222222222 3 33 99 4 7 7 7 7 0 88 888 8 0 0 8 00 0 1 0 8 4 99999 0 33333333 9 333333333333333333333333333333333 777777 7777 5 8 7777777777777777777777777777777777777777 77777 3 0 000000 66 88888 66 8 7777777777777 7 33333333 6666666666 44444 44444444444444444444 6 88 0 8888 4 0 0 0 5 444 11111111 444 444 44 444 111 111111 6666666666666666666666666666 9 55 7 444444 5 8 88888888888 1111 1111 88888888888 3 0 0 0 7 7 888 77 00000000 0 777 00 0 7 0 0 6 44 0 7 0 7 6 7 22 000000000000000000000000000000000000000000000 0
consensus : GATTTATACAAAACTGAATTCGGTTGCTTCGTGATCTTAGTCCAGTACATAATGGAACGCTCTTTAGAAATCACAGATATAGG-A----A-----CCTCAAAATATAAAG---------ATGACATTACCTGATTACAACTT--AA-------GAGTTTAATACATTGGAAAGAGAGTTATATAGAATAGAGAAAAATA--TATTTGTAAATATATAT-TTTATCTTAA-CAAGGGAGGA-TG-TTATATTATTGTAATTTGAN-TTTT-T-GTATTATATAAAAAATAT-GAATTGGTTTATTTT-TGTAAAGATGCAGTTAAAACGATATGCAAAGGTCAAAG-GTGTCAACTTAAGGAGATGCGATAGCAGGATAATTAGCCATGGA-CTTTGTGTCATTCAGAAATGTTAGGTCGTGTTGTTGGTAAGATATGTG-CGTGTTTAATGTAGAG-T-A-GTAAATAA-GAATAATTGTTTATATGTCTCTCCAGGTTTGTCATATAATGTTGGTGATGATATAATATT---------GT----------AC----------AGAACAGA----A-ATTTTATTT----AGACTTGAGCATCAANANTCATCGTTAN-A----------TAC-----------A-----AACATTTTC-AATGCATGCAATGTGATGTTTACAATAT-A-AA-ATACAT--AG-----TTC--TAAATCAA-TA--------T----TG-GTGAGA--------G----------TGG-----TTT---------TA---------AACAAAATCATATT--GCAAAATCTAGT-A--ATAATAGTA-T-T-C-GTCGAGCAGT---AT--------TAG---TATATAAATA---A--T---GATA-T-TTTTAATTAACATATCT----ATGT-A-T---AT----G------T-------ATGT-GA-ATTGTTATAC-----GTAATTTATCAGATTGTATC-----------T----GCATTTG----AAA-----------GCTTTTGTCC-AAAATGATGCTAATTTTGTTAACAACGATTTTCGGTTTGTATTTAATAAA-TC-TATAAACTTTACCATACTTGGTCGTCCGGTGTAATA---TGTTTGTATATATTCATCTCTTATTTGATTGTAGATTGGACAA----ACAATGATAAAATTCATGNAGGTCAT---TGNTGACGTGATTACAA-A-CAAACTAAAATCGTTATGTACGGGTATGGAATAGTTCAGACTGTTCATGAAACGTTCTGTAATGACGAGTTGGNCGGCAACGCCATAGGGCTAATCCTGAAGTGCAGACTATATATCTGATTACTTCAGAATNACCCTTTACAACGTAACGTAGATGTTGATCGTGTAATCAACGTGTTTGCGTCAT--GCAAATGCAGAAAACTA-AGATTTTCTAAAGTGAC-----------------TTTCCGCATTGCGGCACATATGAACANTCCTCATCAGTACTGTATG
Reference ( family-452 ) : GATTTATACAAAACTGAATTCGGTTGCTTCGTGATCTTAGTCCAGTACATAATGGAACGCTCTTTAGAAATCACAGATATAGG-A----A-----CCTCAAAATATAAAG---------ATGACATTACCTGATTACAACTT--AA-------GAGTTTAATACATTGGAAAGAGAGTTATATAGAATAGAGAAAAATA--TATTTGTAAATATATAT-TTTATCTTAA-CAAGGGAGGA-TG-TTATATTATTGTAATTTGAN-TTTT-T-GTATTATATAAAAAATAT-GAATTGGTTTATTTT-TGTAAAGATGCAGTTAAAACGATATGCAAAGGTCAAAG-GTGTCAACTTAAGGAGATGCGATAGCAGGATAATTAGCCATGGA-CTTTGTGTCATTCAGAAATGTTAGGTCGTGTTGTTGGTAAGATATGTG-CGTGTTTAATGTAGAG-T-A-GTAAATAA-GAATAATTGTTTATATGTCTCTCCAGGTTTGTCATATAATGTTGGTGATGATATAATATT---------GT----------AC----------AGAACAGA----A-ATTTTATTT----AGACTTGAGCATCAANANTCATCGTTAN-A----------TAC-----------A-----AACATTTTC-AATGCATGCAATGTGATGTTTACAATAT-A-AA-ATACAT--AG-----TTC--TAAATCAA-TA--------T----TG-GTGAGA--------G----------TGG-----TTT---------TA---------AACAAAATCATATT--GCAAAATCTAGT-A--ATAATAGTA-T-T-C-GTCGAGCAGT---AT--------TAG---TATATAAATA---A--T---GATA-T-TTTTAATTAACATATCT----ATGT-A-T---AT----G------T-------ATGT-GA-ATTGTTATAC-----GTAATTTATCAGATTGTATC-----------T----GCATTTG----AAA-----------GCTTTTGTCC-AAAATGATGCTAATTTTGTTAACAACGATTTTCGGTTTGTATTTAATAAA-TC-TATAAACTTTACCATACTTGGTCGTCCGGTGTAATA---TGTTTGTATATATTCATCTCTTATTTGATTGTAGATTGGACAA----ACAATGATAAAATTCATGNAGGTCAT---TGNTGACGTGATTACAA-A-CAAACTAAAATCGTTATGTACGGGTATGGAATAGTTCAGACTGTTCATGAAACGTTCTGTAATGACGAGTTGGNCGGCAACGCCATAGGGCTAATCCTGAAGTGCAGACTATATATCTGATTACTTCAGAATNACCCTTTACAACGTAACGTAGATGTTGATCGTGTAATCAACGTGTTTGCGTCAT--GCAAATGCAGAAAACTA-AGATTTTCTAAAGTGAC-----------------TTTCCGCATTGCGGCACATATGAACANTCCTCATCAGTACTGTATG
gi|1 : GATTTATATAAAATTGAATTCGGTTGCGCCATGATCTTAGTCCAGTACATAATGGAACGCTATTTAAAAATCACAGATATATG-A----A-----CCTCAAAATATAAAG---------ATGACATTACCTGATTACAACTT--AA-------GAGTTAAATACATTGGAAAGAGAGTTATATAGAAAAGAGAAAAAGA--TATTTGTAAATATATAT-TTTATCTAAA-CAAGGGAGGA-TG-TTATATTATTGTAATTTGGC-TTTT-TTGTATTATATAAAATATAT-GAATTTGTTTATTTT-TGTAAAGATGCAGTTAAAACAATATGCAAAGGTCAAAG-GTGTCAATTTAAGGAGATGTGACAGCAGGATAATAAGCCACTGA-CTTTATGTCATTCAAAAATGTTAGGTCGTGTTGTTGGTAAGATATGTG-CGTGTTTAATGTACAG-T----TAAATAA-GAATAATTGTTTATATGTCTCCCTAGGTTTGTCATATAATGTTGGTGATGATATAGTATT---------GT----------NN----------NNNNNNNN----N-NNNNNNNNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNN-N----------NNN-----------N-----NNNNNNNNN-NNNNNNNNNNNTCTGATGTCTACAATAC-A-AA-ATATAT--TG-----TTC--AAAATCAA-TA--------T----TG-GTGAGA--------G----------TGG-----TTT---------TA---------AACAAAATCATTTA--GCAAAATTTAGT-A--A-AATAGTA-T-T-C-GTCGACCAGT---AT--------TAG---TATGTCAATA---A--T---GATA-T-TTTTAATTAACATATCT----ATGT-AAT---ATCA--G------T-------ATGT-GA-ATTGTTACAC-----GTAATTGATCAGATTGTATC-----------T----GCATTTG----AAA-----------GCTTTTGTCC-AAAATGATGCTACTTTTGTTAACAACGATTTTCGGTTTGTATTTAATAAA-TC-TATAAACTTTACCGTACTTGGTCGTCCGGTGTAATA---TGTTTGAATATATGCAACTCTTATTTGATTGTAGATTGGACAA----ACAATGATAAAATTGATGTAGGTCCT---TGATGACGTGATTACAA-A-CAAAC---AACCGTTATGTACGGGTATGGACTAGTTCAGA-----CATGAAATGTTCTGTAATGACGTGTTGGTCGGCAACGCCATAGGGCTAATCCTGAAGTGCAGACTATATATCTGATTACTTCAGAATAACCCTTTACAACGTAAAGTAGATGTTGATCATGTGATCACCGTGTTTGCGTCAT--GCAAATGCAGAAACCTAGAGATTTTCTAAAGTGAC-----------------TTTCCACATGGCATCACATATGAACACTCCTCATCAGTACTGTATG
gi|10 : ACAT--AG-----ATC--TAAATCAA-TA--------TAT--TA-ACGAGG--------G----------CGA-----ATTA--------TA---------AACAAAATCATATC--GCAATATCCAAT-A--ATAGTAATA-TCT-C-GTCAACCAAT---AT--------TAT---TATATAAATG---A--T---AATA-T-TTTTAGTTAACATATTA----ATGC-A-TGAAAT----G------TCATCTTAATGTAGATATTTTCATATCGTGTGTAACTTGT-ACTTTTTATTACCCAATCTAAT----GCATTTGTTGTAAATTCGTTTCGATACTTTTGTTC-GAA-TGATACTTAATTTGTTAACAATGACTT-------GTATTTAACAAG-TC-TATAAACTGTCCCATATTTAGTCGTCTAGTGTAATAACATGTTGGTTTATATTCGTCTCTTATTTTATTGTAGTTAGGACAA----GCAATGATAAAATGAATGAATG-CATGTATATTGTAGTAAGGACAA-A-CAA
gi|11 : c-----AACATGTGC-AAAGCCTGCAATGAGATGTTTACAATAC-A-----TACAC--AG-----TTT--TAAACCAA-TA--------TAT--TG-ATGGGA--------G----------TGA-----TTTATATCATTTTA---------AACAAAATCATATT--GCAAAATCTAATTATTATAATAATA-T-TTC-GCCAAGCAAT---AT--------AAG---TTGATGAATA---A--C---TATA-T-CTT-AGTGAACATATGT----ATGT-T-T---AT----G--------------------A-AATGGTATAC-----ACAATTTATCGGATTGTTTC-----------T----GCATTTG----AAA-----------GCGTTTATCC-AAAATGATGCTAATTTTGTTAACAAGGATTTTCAATTTGTATT---TAAA-CCATATAAATGTTACTATAATTAGTCGCCTTGTGCAGTA---TGTTTGTATATATCCATCTCTTATTTGATTGTAGAAAGGACAATGATGTAATGATAt
gi|12 : C-----------A-----AATATTTTC-AATGCATAGAATGTGATGGTTACAATAT----T-ATACAT--AA-----ATA--TAGATCAA-TA--------T----TG-GTGAGA--------A----------TGG-----TTT---------T---------------------------CAAAAGCTAGT-A--ATAATAGTA-T-T-TAGTCAAGCAAT---AT--------TGG---TATATAGATA---A--T---CATAGTATTTTAATTAACATACCT----ATGT-G-T---CT----GACAATTT-------ACAT-G-------TATAC-----ATAATTTATCAGATTG--TT-----------TGAAAGCATTCG----AAA-----------GTTTTTGTCC-AATATGATGCTActagtcatttctttcatttcagtgt
gi|13 : -----------A-----AACATTTTC-AATGCATACAGTGAGATGGTTACAATAT-T-A---TACAT--AG-----TTC--CAAATCAA-TA--------T----TG-GTGAGA--------G----------TGG-----TTT---------TA---------AACAAAATCGTATT--GCAAAATCTAGT-A--ATAATAGTA-T-T-C-GTCAAGCAAT---AT--------TAG---TATATAAATA---A--TCATGGTA-T-TTT-AATTAACATAT-----------------------G------T-------ATGT-GA-AATGTTATAC-----TTTATTTATCAGATTGTTTC-----------T----GTATTTA----AAA-----------GCTTTTGTCC-AATATGATGGAAATATTGTTAACACCGATTTTTGGTTTGTATTTAATAAG-TC-TATAAACTTTACCACACTCGGTTGTTTTTTGTAAAA---TTTTGGTATTTATTCATCTCTTATTTGATTGTAGAtagtatacaattataaaactttaccgtcttttcatatacatcttacataattaacagcgataaacaaatgttggtttttatgttttccaatttaatggagaacatattaagtatggtagaattagtcat
gi|14 : C----------AGAACAAATAATACATTTTATTT----AGACTTGAGTATCA-----------TAA-A----------AAC-----------A-----AA---------ATACATGCAATGTGATGTTAACACTAT-A-AACATAGAT--AGTTTAATTC--TAAATCAA-TA--------TATAGTA-GTAAGT--------GATTATTGTTATGG-----TTA---------TA---------AACAAAACCATATT--GCAAAATACAAT-A--ATAATACTA-T-TGT-GTCATGCAAT---AT--------TAT---TATTGAAATA---C--T---GATA---TTTTATTTGACATTTCT----ATGT-T-T---GT----G----------------GT-A----TGTTATTC-----GTTATTCATCA-AT--TATC-----------T----GCATTTC----AAA-----------GTTTTTGTTTAAAAATG-TGCTGATTTTGTTTTCAA-GGTTTT--GTTT
gi|15 : tacacagaaccgagCAG-A-CAAACTAAAATCGTTATGTTCGGGTATGAAATAGTTCAGACTGTTCATGGAATGTTCTGTAATGACCAGTTGGTCGGCAACACCATAGGGCTAATCCTGAAGTGCGGAC--TATATCAGATTACTTCAGAATCACACTGTACAACATAACATAGATGTTAATCGTGTAATCAACGTGTTTGCATCAC--GAAAATGCAGAAAACTACAGTGTCTCTAAAGTGACTTATGAAATATTCTACTTTTCCACATTGCGGCACGTATGAACAATCCTCAACAATtg
gi|16 : --AG-----TTC--TAAATCAA-TA--------T----TG-GTATGA--------G----------TAG-----TTT---------TA---------AACAAAATCATATT--TCAAAAGCTGGT-A--GTAATAGAA-T-T-C-GTCAAGCAAT---ATAAATATAATAGAAATATATAAATT---ATCT---GGTA---TTTTGATTAACATATAT----ATGT-A-T---A-------------------------GA-AATGTTATAC-----AT-CTTTATCAGAGTGTTTC-----------T----GCATTTG----AAA------------CTTCTGTCC-AATATGATGCTAATTTTGTTAATAACGA-TTTCGGTTTGTATTTAGTAAG-TC-TATCAACTTTACCATACTCGATCGTCCGGTG
gi|17 : c----------AGAACAGA----A-ATTCTATTT----AGA-TTGAGC-TCAACAG-CAGC-TTACCA----------TAC-----------A-------------C-AATGCATGCAATGCGATGTTTACAA----A-AC-ATAC----AA-----TTC--TAGACCAATTA--------C----TATGTTAAATAATTTTTA----------TGGC----TTT---------TA---------AAC--GGTCATGCT--GCATAA-CTAA--G--ATTATA-TATT-T-C-GTCAA--AGTGAAAT--------AAC---AACAGAAATA---A--T---AA
gi|18 : aatgtttgagttaatttttttatagactCATTTTC-AATGCATGCACTGTGATGTT-ACAATAT-T-A---TACAT--AG-----TTA--TGAATAAA-TA--------T----CG-GTGAGA--------G----------TGG-----TTT---------TA---------AACAAAATCATATT--TCAAAAGCTAGT-A--ATAATAGTATT-T-C-GTCACGCAAT---AT--------TAG---TATATAAATAATCA--T---GGTA---TTTTAATTAACATATT------------T---AT----G------T-------ATGT-GA-AATGTAATAT-----ATA--TTATCataac
gi|19 : atATAAAATTCG-ACACGTCAT---C-ATGACGT-ATT-CAACATCAAGCTAAAATCGTTATG-A-----ATGAAATAGTTCAGACTGTTTATGAACTGTTCTGTAATG
gi|2 : ttggtcgccatgccttgtattcccatttccattccggtaagttaatgttaagatATTTATACAAAACTGAATTCTGTTGCTTTGTGATCTTAATCAGATATATCATCGAACGCTATTTAGAAATCACATATATAGG-A----AATCTACCTTAAAATATAAAACATTCTATAATGACATAACCTGATTACAACTTTTAATACATGGGAGTTTA-TACATTGGAAAGAGAGCTATATAGAATAGAGAAAA-TA--TATTTGTTAATATATAT-TTTATCTTCA-CAAGGGAGGA-TG-CTATATTATTGTAATTGGAT-TTTTCT-TTTTTACATAAAAAGTAT-GAATTGGTTTATTTT-TGTATAGATGCAGTTAAAAAGATATGCAAATGTCAATTTGTGTCAACTTAAGGAGATGCGATTGCAGGATAATTAGCCATGGA-CTTTGTGTCATTTAGTAATGAAAGGTCGTGTTGTTGTTAAGATATGTG-CGTGTTTAATGTAGAG-TTA-GTAAATAA-GAAC---TGTTGATATATATATCCAGATTTGTCATATAATGTTGGTGATGATATAATATTTTNNNNNNNNN----------NN----------NNNNNNNN----N-NNNNNNNNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNN-N----------NNN-----------N-----NNNNNNNNN-NNNNNNNNNNNNNNNNTGTCTACAATAT-A-AA-GTATGT--AG-----TTC--TAAATCAA-TT--------A----TG-CTGAGA--------G----------TGGAGTGGTTT---------TA---------AACAAAGTCATATG--GCAAAATCTAAT-G--A-AATAGTA-T-T-C-GTCGAGAAGT---AT--------TAG---TATATAGATA---A--T---TATA-T-TTTTAATTAACATATTT----ATGT-A-C----------------T-------AAGT-GA-ATTGTTATAC-----GTAATGTATCAGACTGT--C-----------C-----CATTTG----AAA-----------GCTTTTGTCC-AAAATGTTGCTAATTTTGTTAACAACGATTTTCGGTTTGTATTTAATAAA-TC-CATAAACTTTACCATACTTGGTCGTCGTGTGTAATA---TGTTTGTATATATTCATCTCTTATTTGATTGTA--------AA----A----GATAAAATTCATAAAGGTTAT---TGTTGACGTGATTACAG-A-TAATCTAAAATCGTTATGTACGGGTATGGAATCATTCAGACTGTTCATGAAACGTTCCGAAATGACGAGTTGAACGGCAACGTTATAGGGCTAATCCTAAAATCAAGACTATATATCTGATTAC--------------TTACAACATAACAAAGATGTTGTTCGTATATTCAAAGTGTTTGCGTTAT--GCAAATGCACAA--------ATT----------------------------------GCATTGCGGCACATATGAACAATCCTCATCAGTACTGTATGttctaaacttaaaaaa
gi|21 : ----------AC----------AGAACAGA----A-ATTTTATTTTTCGAGACATGAGCATCA-------TCGTCAA-A----------GAC-----------A-----AACATTT-C-AATGCATGCAATGTGACAGTTACAATATTATAC-ATACATGTAG-----TTC--TAAATCAA-TA--------T----TG-ATGATA--------G----------TGG-----TTT---------Tgg
gi|22 : gaacagaATTTATGCAAAACTGAATTCGGTTGCTTCGTGATCTTAATCAAGT--ATAATGGAACGCTCTTTAGAAATCACATATATAGGCAATCTA-----CCTTAAAATATAAAA---------ATGACATTAC---ATTACAACT---------------TTCAATACATTGGA
gi|23 : CAA-TACA------T----CA-GTGAGA--------T----------TGA-----TTTCATTTTTTGTA---------AACAAAATCATATT--GT------TAG-------AA------------GTCAAGCAAT---AG--------TAA---TATATGAACA---A--A---GATA-T--TTTAGTTTACATATTTATTCATGTAA-T---AT----A------T-------ATAT-
gi|24 : aa-----------------TTTCCGCATTACGGCACATATGAACAATTTTCATCAatatatatttc
gi|25 : acgtgagtgcaatgaaacgcatcaaaaactatctgcgttcaacaattagttccgacttaagaaaacttctact-ATACAC--AA-----TGC--TAGGTCAA-TACATGTATAT----TG-GCGAAA--------G----------AGG-----TTT---------CATTGATTTGTAACAAAATCATACT--GCAGAATCTAAT-ACGATTATA-TA-T-T-
gi|26 : -ATACAC--AA-----TGC--TAGGTCAA-TACATGTATAT----TG-GCGAAA--------G----------AGG-----TTT---------CATTGATTTGTAACAAAATCATACT--GCAGAATCTAAT-ACGATTATA-TA-T-T-t
gi|27 : TGTTATGGTTACAATAT-T-A---TACAT--AG-----ATC--TAAATCAA-TA--------G----TG--TAAAT--------T----------TGG-----TTT---------TA---------AAAAAAATTATATT--GCAAAATGTAGT-A--TCAATAGTA-T-T-t
gi|28 : TTTTGTTGG----GATTT-CGGGTAGTAATTA-TAAACTC-TATAAATTGTACGATAATTGGTCGTCTAGTGTGATA---TATTTGTATATAt
gi|29 : GACGAGTTGTATGGCAACGCCATTGTGCTAGTCCTGAAGTGCAGAC--CATATCTGATTACATCAGACTCACCCTGTACAACG
gi|3 : ATTTATCCAAAATTTAATTCAGTTGCTTCATG------------TACATAATGAAATGCCTTTTAGAAATCACAGATTTAGG-A----A-----CCTCGAAATATAAAG---------ATGACATTACCTGATTACAACTT--AAA------GACTTTAATACATTGGAAAGAGAGTTATATAGAATAGAGAAAAATA--TATTTGTAAATATATAT-TTTATCTAAA-CAAGGGAGAA-TG-TTATACTA--GTAA
gi|3 : AGTAAAAA--ATATGCAAAGGTCAAAG-GTGTCAATTCAAGGAGATGTGATAGCAGGATAATTAGCCATGGA-CTTTGTGTCATTCAGAAATGTTAGATTGTGCTTTTGGTAAGATATGTG-CGTGTTTAATGTAGAG-T-AAGTAAACAA-GAAT---TGTTAATATGTCTCTCCTGGTTTGTCATATAATGTTGGTGATGATATAATATT---------AT----------NN----------NNNNNNNN----N-NNNNNNNNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNN-N----------NNN-----------NNNNNNAACATTTTTTAATATGTGCAATGTGATGTTTACAATAT-A-AA-ATGTTT--TG-----TTC--TAAATCAA-TA--------T----TG-GTGAGA--------G----------CGG-----TTT---------TA---------AACAAAATCATTTT--TAAACATCTAGT-A--AAAAAAGTA-T-T-C-GTCGAGGAGT---AT--------TAG---TATAAAAGTA---A--T---GATA-T-TTTTAATTAACATATTT----ATGT--------T----C------T-------ATGT-GA-ATTGTTACAC-----GTAATTTATCAGCGTGTGTC-----------T----GCATTTG----AAA-----------GCTTTTGTCC-AAAATGATGCTACTTTTGTTAACAACGAATTTCGGTTTTAATTTAACAAA-TA-TATAAACT-----GCACTTGGTCGTCCGGTGTAATA---TGTTTGTATATATGGATCTCTTATTTGATTGTAGATTGGACAA--------TGATAAAATTCATGTAGGTCCT---TGATGGCGTGACTGCAA-A-CACACTAAAATGGTTATGTACGGGTATGGAATAGTTCAGACTGTTCATGAAATGTTCTGTAATGACGAGTTAATCGGCAACACCAAAGGGCTACTCCAGAAGTGCAGACTATAAATCTA---ACTTCAGGATCACCCTATACAACGTAACATAGATGTTGATCGTGTAATC-ACGTATTTGCGTCAT--GCAAATGCAGAAAA-TA-AGAT-------------------------------------ATTGCGGAGCTTATGAACACTCCTCATCAGTACTGTATGaaaatatgcaaaggtcaaaggtgtcaattcaaggagatgtgatagcaggataattagccatggactttgtgtcattcagaaatgttagattgtgcttttggtaagatatgtgcgtgtttaatgtagagtaagtaaacaagaattgttaatatgtctctcctggtttgtcatataatgttggtgatgatataatattatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacattttttaatatgtgcaatgtgatgtttacaatataaaatgttttgttctaaatcaatattggtgagagcggttttaaacaaaatcatttttaaacatctagtaaaaaaagtattcgtcgaggagtattagtataaaagtaatgatatttttaattaacatatttatgttctatgtgaattgttacacgtaatttatcagcgtgtgtctgcatttgaaagcttttgtccaaaatgatgctacttttgttaacaacgaatttcggttttaatttaacaaatatataaactgcacttggtcgtccggtgtaatatgtttgtatatatggatctcttatttgattgtagattggacaatgataaaattcatgtaggtccttgatggcgtgactgcaaacacactaaaatggttatgtacgggtatggaatagttcagactgttcatgaaatgttctgtaatgacgagttaatcggcaacaccaaagggctactccagaagtgcagactataaatctaacttcaggatcaccctatacaacgtaacatagatgttgatcgtgtaatcacgtatttgcgtcatgcaaatgcagaaaataagatattgcggagcttatgaacactcctcatcagtactgtatgag
gi|30 : atttatccaaaatttaattcagttgcttcatgtacataatgaaatgccttttagaaatcacagatttaggaacctcgaaatataaagatgacattacctgattacaacttaaagactttaatacattggaaagagagttatatagaatagagaaaaatatatttgtaaatatatattttatctaaacaagggagaatgttatactTAAGATATGTG-CGTGTTTGATGTAAAG------------A-AAGTA-----------GTCTCTCCAGGTTTGTCATATAATGTTGGTGATGATATAAag
gi|31 : tAC-----------A-----AACATTTTC-AGTGTATGCAATGTAATAGTTACACTAT----T-ATACAT--A-------TCAATGAATTAA--A--------T----TA-GTG
gi|32 : -GTAAGA--------G----------TGG-----TTT---------TA---------AACAAAATCATATT--GCAAAATCTAAT-A--AAAAAAGTA-T-T-gtt
gi|4 : -GTGTCAACTTAAGGAGATGTGATTACAGGATAATTAGCCATGGA-CTTTGTGTCATTTAGTAATGTAAGGTCGTGTTGTTGGTAAGATATGTG-CGTGTTTAATGTAGAGCT-A-GTAAATAA---ACA-CTGTTTATATATATC--CAGATTTGTCATATAATGTTGGTGATGATATAATATT---------GT----------NN----------NNNNNNNN----N-NNNNNNNNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNTGC-----------A-----AACATTTTT-AATGTATGCAATGTGATGTCTACAATAT-A-AA-GTATGT--AG-----TTC--TAAATCAA-TT--------A----TG-CTGAGA--------G----------TGGAGTGGTTT---------TA---------AACAAAATCATACG--GCAAAATCTAAT-G--A-AATAGTA-T-T-C-GTCGAGCAGA---AT--------TAA---TATATAAATA---A--T---TATA-T-TTTTAATTAACATATTT----ATGT-A-C----------------T-------ATGT-GA-ATTGTTATAC-----GTAATTTATCAGACTGTATC-----------T----GTATTTG----AAA-----------GCCTTTGTCC-AAAATTTTGCTAATTTTGTTAACAATGGTTTTCGGTTTGTATTTAATAAA-TC-TATAAACTTTACCATACTTGGTCGTTCGGTGTAATA---TGTTTGTATATATTCATCTCTTATTTGATTGTAGAATGGACAA--------TGATAAAATTCATATAGGTCAT---TGTTGACGTGATAACAA-A-TAATCTAAAATCGTTATGTACGTGTATGAAATTATTCAGACTGTTCATGAAACGTTCTGAAATGACGAGTTTAAGGGCAACGTTATAGGGCTAATCCTAAAATCCAGACTATATATCTAATTACTTCAGAATAACCCTTTACAACGTAACATAGATGTTGATCGTATATTCAAAGTGTTTGCGTCAT--GCAAATGCAGAA--------ATT----------------------------------GCATTGCGGCACATATGAACAGTTTTCATCAGTACTGTATGt
gi|5 : caatgtcaatttGATTTATATAAAACTGAAATCATTCTCTTCATGATCTTAGTCCAGTACATAATGGTACGCTTTTTAGAAAGCACAGATATAGA-A----A-----CTTCAAAACACAAAG---------ATGACATTACCTGATTACAACTT--AA-------GAGTTTGATACATTGGAAAGAGAGTTATATAGAATAGAGAAAAAAAATTTTTTGTAAATATATATATTTATCTTAA-CAAGGGAAAC-TA-TTATATTATTGACGTTT----TTTT-T-GTATTATAT-AAAAATAT-GAATTGGTTTATTTT-TGTAAATATGCAATAAAAAAGATAGGCAAATATCAAAG-GTTTCAATTTAAGGATATGTGATAGCAGGATAATTTGCCATGGA-CTTTGTGTCATTCAGAAATGATAGGTCGTTATGTTGGTAAGATATGTG-CGAGTTTAATGTAGAGTT-A-GTAAATAA-G---AATTGTCTATATGTCTTTTCAGGTTTGTCATATAATATTGGTGATGATATAATATT---------ATNNNNNNNNNNNN----------NNNNNNNN----N-NNNNNNNNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNN-N----------TAC-----------A-----AACATTTTT-AATGCATGCAATCTGATGTCTACAATAT-A-AA-ATATAT--AG-----TTC--TAAATAAA-TA--------T----TA-TTGAGC--------G----------TGG-----TTT---------TA---------AACAAAATCATTTT--GCAAAATCTAGT-A--A-AATAATA-T-T-G-AACGAGCAGT---AT--------TAG---TATATAAATA---A--T---GATA-T-CTTTAATTAACATATCT----ATGT-ACT---ATCATAG------T-------ATGT-GC-ATTGTTACAC-----GTAATTTATCAGATTGTATC-----------T----GCATTTG----AAA-----------ATTTTTGTCC-AAAATGATGCTAATTATGTTGACAACGGTTTTCgg
gi|6 : ATTTATACAAAATTGAAGTCTATTGTTTCATGATCTTAGCCCAGTATATAATGGAACGCTCTTTAGAAATCACAGATTTAGG-A----A-----CCTCAAGAAATAAAA---------ATGACATTACCT--------------------------TTAATACATTGGAAAGAGAGTTATATAGAATAGAGACAAATT--CATTTGTAAATACATAT-TTTATCTTAA-AAATGGAGGA-TACTTA-ATTATTACAATTAGAA-TATT---GCATTGTATAAGAAATAT-GAATTGGTTTATTTA-TGTAAAGATGCAGTTAAA-C--TATGCAATGGCCAAAG-GTGTCAACTTAATGAGATACGATAGCAGCATAATTAGTAATGGT-CTTTGTGTCATTCAGAAATGTTAGGCAG---TGTTGGTAATATATGTA-CGTGTTTAATATAGAG-T-C-AT-AATAACG---AATTGTTTATATGTCTCTACGGGTTTGTCATATACTGTTGGTGATGCTCTTATATT---------GT----------NN----------NNNNNNNN----N-NNNNNNNNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNN-N----------NNNNNNNNNNNNNGA-----AACATTTTT-TATGCATGTACTCTGATGTCTGCAATTT-A-AA-ACATAT--AG-----TTC--TAAATCAA-TA--------T----TG-GTGAGA--------G----------TGG-----TTT---------TA---------AACAAAATt
gi|7 : -GTTAGA--------G----------TGG-----TTT---------TA---------A-CAAAATCATTTT--GCAAAATCTTGT-A--A-AATAGTA-T-T-C-GTCGAGCAGT---AT--------TAG---TATATAAATA---A--T---GATA-T-TTTTAaa
gi|7 : GT-A-T---TA----G------T-------ATAT-AA-ATAATGATAT------T--TTTATCAGATTCTATC-----------T-----CATTTA----AAA-----------GCTTTTGTCC-AAAATGACGCTAATTATGTTAACAACGATTTTCGGTATGTATTTAATAGA-TC-TATAAACTTTACAA-ACTTGGTCGGTCGGTGTAATA---TGTTTGTATATATTCATCTCTTATTTGATTGTAGATTGGACAA----ACCATGAtcagattctatctcatttaaaagcttttgtccaaaatgacgctaattatgttaacaacgattttcggtatgtatttaatagatctataaactttacaaacttggtcggtcggtgtaatatgtttgtatatattcatctcttatttgattgtagattggacaaaccatgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacaaactaaaatcgttatgtacgggtatggaatagatcagtctggtcatgaaacgttctgtaatgacaggttggttggcaacgctttaatcctgtagtgcagactatatatctgattacttcagaataacgctttataatgcaacgtagctgttgatcgtgtaatcaccgtgtttgcgtcataaaaaaatgcagaaaactagagattttctaaagtgactttccgcattgcggcacaaatgatcactcctaataagtactgtatgggt
gi|7 : gttagagtggttttaacaaaatcattttgcaaaatcttgtaaaatagtattcgtcgagcaAA-A-CAAACTAAAATCGTTATGTACGGGTATGGAATAGATCAGTCTGGTCATGAAACGTTCTGTAATGACAGGTTGGTTGGCAACGCT------TTAATCCTGTAGTGCAGACTATATATCTGATTACTTCAGAATAACGCTTTATAATGCAACGTAGCTGTTGATCGTGTAATCACCGTGTTTGCGTCATAAAAAAATGCAGAAAACTAGAGATTTTCTAAAGTGAC-----------------TTTCCGCATTGCGGCACAAATGATCACTCCTAATAAGTACTGTATGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacaaactaaaatcgttatgtacgggtatggaatagatcagtctggtcatgaaacgttctgtaatgacaggttggttggcaacgctttaatcctgtagtgcagactatatatctgattacttcagaataacgctttataatgcaacgtagctgttgatcgtgtaatcaccgtgtttgcgtcataaaaaaatgcagaaaactagagattttctaaagtgactttccgcattgcggcacaaatgatcactcctaataagtactgtatgggt
gi|8 : gttagagtggttttaacaaaatcattttgcaaaatcttgtaaaatagtattcgtcgagcagtattagtatataaataatgatatttttatcagattctatctcatttaaaagcttttgtccaaaatgacgctaattatgttaacaacgattttcggtatgtatttaatagatctataaactttacaaacttggtcggtcggtgtaatatgtttgtatatattcatctcttatttgattgtagattggacaaaccatgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTGATCTTAGCTCAGTATATAATAGAACGCTCTTTAGAAATCATATATATAGG-A----AATCTACCTCAAAATATAAAG---------ATGACATTACCTCATTACAACTT--AA-------CAGTTCAATACATTAGAAAGAGAGTAATATAAAGTAGAGACAACAA--TGT-----AATATATGT-TTTATCTTAAACAAGGGAGGAATG-TTATATTATTGTAATTTGAAATTTT-T-ATATTAAATAAAAAATCTTGAATTGGTTTATTTTGTGTAA-GCTGCAGTTAAAAT-ATATGCAAAGGTCAAAG-GTGTCAACTTAATGAGATGAGATAACAAGATAATTAGCTTCGGAACTTCGTGTCATTTAGAACTGACAGGTCGTGTTGTGGGTAAGATAT-TGACATGTTTAATGTAGAG-TTA-GTTATTAA-GAAT---TGTTTATATGTCTCT--AG--TTGTCATATAATGTTGGTGATGTTTTAATATT---------GT----------ACAGTAC-----AGAACAGA----A-ATTTTATTT----AGACTTGACCATCAAAACTCATCGTTAT-A----------TAC-----------A-----AACACTTGT-AACGCACGCAATGTGATGTTTACAATAT----T-ATACAT--AG-----TTC--ATAATCCA-TA--------T----TG-GTAAGA--------G----------TGG-----TTT---------TG---------AACAAAggt
gi|9 : ttaATTTATATAAAATTGAATTCAGTTGCTTAATGAT
gi|9 : GATATAGG-A----G-----CCTCAAAATATAAAG---------ATGATATTACCTGATTAC-------AA-------GAGATTGATACATTGGAAAGAGGGTTATATAGAATAGAG--AAATA--TATT--TAAACAAATAataggagcctcaaaatataaagatgatattacctgattacaagagattgatacattggaaagagggttatatagaatagagaaatatatttaaacaaatacaaagatcaaaggtgtcaattgaaggagatgtgatagcaggataattagccatagactgtgtgtcatttaggaatgttaggtcgtgttgctggtaagacatgtgactgtttaatgtagagctagtaaataagaattgttaatgtctctccaggtttgtcatataattttggtgacgatataatattgtacgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatacaaacattttctaatgtatgcaatctgatgtctacaatatcaaatatatagttctaaatcaatattggtgagagtggttttaaacaaaatcatttcagcaaaatcttgtgaaatagtattcgtcgagcagtattagtatataaataatgatgtgtttaattaacatatctatatact
gi|9 : atttatataaaattgaattcagttgcttaatTTTAAACAA-ATACAAAGATCAAAG-GTGTCAATTGAAGGAGATGTGATAGCAGGATAATTAGCCATAGA-CTGTGTGTCATTTAGGAATGTTAGGTCGTGTTGCTGGTAAGACATGTG-ACTGTTTAATGTAGAGCT-A-GTAAATAA-G---AATTG-TTA-ATGTCTCTCCAGGTTTGTCATATAATTTTGGTGACGATATAATATT---------GT----------ACGANNNNNNNNNNNNNNNN----N-NNNNNNNNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNA-A----------TAC-----------A-----AACATTTTCTAATGTATGCAATCTGATGTCTACAATAT-C-AA-ATATAT--AG-----TTC--TAAATCAA-TA--------T----TG-GTGAGA--------G----------TGG-----TTT---------TA---------AACAAAATCAT-TTCAGCAAAATCTTGT-G--A-AATAGTA-T-T-C-GTCGAGCAGT---AT--------TAG---TATATAAATA---A--T---GATG-T-GTTTAATTAACATATCT----ATAT-A-caaagatcaaaggtgtcaattgaaggagatgtgatagcaggataattagccatagactgtgtgtcatttaggaatgttaggtcgtgttgctggtaagacatgtgactgtttaatgtagagctagtaaataagaattgttaatgtctctccaggtttgtcatataattttggtgacgatataatattgtacgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatacaaacattttctaatgtatgcaatctgatgtctacaatatcaaatatatagttctaaatcaatattggtgagagtggttttaaacaaaatcatttcagcaaaatcttgtgaaatagtattcgtcgagcagtattagtatataaataatgatgtgtttaattaacatatctatatact
blockSeqs : T G A C AATCTA CATTCTATA G TTTAATACATGG A AT AT T A A A C G AA CT T G AG T C A A TTA A AAGTA C ATNNNNNNNNNNNN TAATAC TTCG C A NNNNNNNNNNNNNNNNNNNNNNNNNNNNG NNNNN G T TATAC GT TTTAA AA T CATGTATAT T TAATTTTT ATTATTGTTA AGTGG ATATCATTTTA CA T TTAT A T C T A GAA AAATATAA AAA ATC TC CAT GTA TTATTC ATGAAATGTCATCTTA A AT T CGTGTG A A ACCCAATCTAA GAAA TTGT TTCGTTTCGAT A T C A ACA TA TGATGTAA A GTA AT A A C T GT T T C G AA AACTACAGTGTCTCTAAAGTGACTTATGAAATATTCTACTTTTCC A
blockSeqs : G G C . AATCTA . G TAAA A AA . T . . . . T T T . . AG . T . . TAA A CGAAT C GTACGANNNNNNNN A . N N NNNNNNNNNNNNNNNNNNNNNNNNNTGC . T T AAAC . . . . CATGTATAT . . . AGTGG CATTTTTTGTA . . CGAT A T . G . . . . . . . T TA GTCTGACAATTT . A A A A T . . . . . G . . . AA GCAA C . GT G A . . AA T A C T . AACTAGAGATTTTCTAAAGTGACTTTCC A
blockSeqs : A A T . ATCTA . G TAA A AT . T . . . . A A T . . CA . T . . CTA A GAAC C TTNNNNNNNNNNN N . C A NNNNNNNNNNNNNNNNNN . T . AAC . . . . TATAG . . . C CATTGATTTGT . . CGAT G . . . . . . . . . . T GT ACTATCATAGT . A A A A T . . . . . C . . . TT ACCA A . GA G G . . TA T T C G . AATAAGAT A
blockSeqs : A A T . A . C TAA C CA . T . . . . T . . . . C . T . . TTA A GAAT T GTACAGTAC A . N N NNNNNNNNNNNNNNNNNN . T . AAA . . . . TAT . . . . CATTGATTTGT . . AT G . . . . . . . . . . T CT AATATAT . A A T T A . . . . . C . . . AT A T . GT G A . . AT T T A A . ATT C
blockSeqs : T A C . A . G AA C AT . . . . . . T . C . . TTA T ACAC A ATNN N . N N NNNNNNNNNNNNNNNTAC . N . AAA . . . . TAT . . . . ATA . . AT C . . . . . . . . . . T CT ATTAGT . A A G T T . . . . . C . . . TT . T . A . . . . AA . T A T . ATT G
blockSeqs : A A C . A . . . . T . . . . A . . CTA A GAAT C GTNN N . N N AAACTCATCGTTATATAC . T . AAA . . . . CAT . . . . TA . . AT G . . . . . . . . . . T AT TTATG . A T A A G . . . . . C . . . . . . . GT . . . T C
blockSeqs : . G . . . . T . . TC . GAAT . GTNN N . N N NNNNNNNNNNNNNAATAC . T . AAA . . . . T . . . . TA . . AT G . . . . . . . . . . T TT TTGTG . A T A A A . . . . . T . . . . .
blockSeqs : . . . GAAT . N . C A ACAGCAGCTTACCATAC . T . AAA . . . . T . . . . TA . . GT G . . . . . . . . . . T TT TATGT . A T G A A . . . . . C . . .
blockSeqs : A . N N TCGTCAAAGAC . T . CAA . . . . T . . . . TA . . AT G . . . . . . . . . . T TT ATA . C T G A A . . . . . C . .
blockSeqs : N . . . TAAAAAC . T . TA . . . . C . . . . TA . . AT G . . . . . . . . . . T CT ACT . A T G A . . . . . . .
blockSeqs : . G . TA . . . . T . . . . TA . . TC G . . . . . . . . . . T CT TCT . . . G . . . . . . . .
blockSeqs : . T . TA . . . . A . . . . TA . . AA G . . . . . . . . . . . T ACT . . . . .
blockSeqs : . . . A . . . . T . . . . TA . . AA A . . . . . . . . . . . . GT .
blockSeqs : . . . T . . . . G . . . . TA . . A G . . . . . . . . . . .
blockSeqs : . . T . . . . T . . . . TA . . A G . . . . . . . . . .
blockSeqs : T . . . . T . . . . TA . . A . . . .
blockSeqs : . . . . A . . . . TA . . A . . . .
blockSeqs : . . . . T . . . . TA . . A . . . .
blockSeqs : . . . . T . . . . TG . . . . . . .
blockSeqs : . . . . T . . . . TA
blockSeqs : . T . . . . T
blockSeqs : . . . .
blockSeqs : .
blockSeqCons : T** TTA** GAAT**** AT** ATTAGT********************** AATAAGTT*************************************
originalCons : GATTTATACAAAACTGAATTCGGTTGCTTCGTGATCTTAGTCCAGTACATAATGGAACGCTCTTTAGAAATCACAGATATAGG-A----A-----CCTCAAAATATAAAG---------ATGACATTACCTGATTACAACTT--AA-------GAGTTTAATACATTGGAAAGAGAGTTATATAGAATAGAGAAAAATA--TATTTGTAAATATATAT-TTTATCTTAA-CAAGGGAGGA-TG-TTATATTATTGTAATTTGAN-TTTT-T-GTATTATATAAAAAATAT-GAATTGGTTTATTTT-TGTAAAGATGCAGTTAAAACGATATGCAAAGGTCAAAG-GTGTCAACTTAAGGAGATGCGATAGCAGGATAATTAGCCATGGA-CTTTGTGTCATTCAGAAATGTTAGGTCGTGTTGTTGGTAAGATATGTG-CGTGTTTAATGTAGAG-T-A-GTAAATAA-GAATAATTGTTTATATGTCTCTCCAGGTTTGTCATATAATGTTGGTGATGATATAATATT---------GT----------AC----------AGAACAGA----A-ATTTTATTT----AGACTTGAGCATCAANANTCATCGTTAN-A----------TAC-----------A-----AACATTTTC-AATGCATGCAATGTGATGTTTACAATAT-A-AA-ATACAT--AG-----TTC--TAAATCAA-TA--------T----TG-GTGAGA--------G----------TGG-----TTT---------TA---------AACAAAATCATATT--GCAAAATCTAGT-A--ATAATAGTA-T-T-C-GTCGAGCAGT---AT--------TAG---TATATAAATA---A--T---GATA-T-TTTTAATTAACATATCT----ATGT-A-T---AT----G------T-------ATGT-GA-ATTGTTATAC-----GTAATTTATCAGATTGTATC-----------T----GCATTTG----AAA-----------GCTTTTGTCC-AAAATGATGCTAATTTTGTTAACAACGATTTTCGGTTTGTATTTAATAAA-TC-TATAAACTTTACCATACTTGGTCGTCCGGTGTAATA---TGTTTGTATATATTCATCTCTTATTTGATTGTAGATTGGACAA----ACAATGATAAAATTCATGNAGGTCAT---TGNTGACGTGATTACAA-A-CAAACTAAAATCGTTATGTACGGGTATGGAATAGTTCAGACTGTTCATGAAACGTTCTGTAATGACGAGTTGGNCGGCAACGCCATAGGGCTAATCCTGAAGTGCAGACTATATATCTGATTACTTCAGAATNACCCTTTACAACGTAACGTAGATGTTGATCGTGTAATCAACGTGTTTGCGTCAT--GCAAATGCAGAAAACTA-AGATTTTCTAAAGTGAC-----------------TTTCCGCATTGCGGCACATATGAACANTCCTCATCAGTACTGTATG
finalCons : GATTTATACAAAACTGAATTCGGTTGCTTCGTGATCTTAGTCCAGTACATAATGGAACGCTCTTTAGAAATCACAGATATAGG-A----A-----CCTCAAAATATAAAG---------ATGACATTACCTGATTACAACTT--AA-------GAGTTTAATACATTGGAAAGAGAGTTATATAGAATAGAGAAAAATA--TATTTGTAAATATATAT-TTTATCTTAA-CAAGGGAGGA-TG-TTATATTATTGTAATTTGAN-TTTTT--GTATTATATAAAAAATAT-GAATTGGTTTATTTT-TGTAAAGATGCAGTTAAAACGATATGCAAAGGTCAAAG-GTGTCAACTTAAGGAGATGCGATAGCAGGATAATTAGCCATGGA-CTTTGTGTCATTCAGAAATGTTAGGTCGTGTTGTTGGTAAGATATGTG-CGTGTTTAATGTAGAGTTA--GTAAATAAGAAT----TGTTTATATGTCTCTCCAGGTTTGTCATATAATGTTGGTGATGATATAATATT---------GT----------AC----------AGAACAGA----A-ATTTTATTT----AGACTTGAGCATCAANANTCATCGTTAN-A----------TAC-----------A-----AACATTTTC-AATGCATGCAATGTGATGTTTACAATAT-A-AA-ATACAT--AG-----TTC--TAAATCAA-TA--------T----TG-GTGAGA--------G----------TGG-----TTT---------TA---------AACAAAATCATATT--GCAAAATCTAGT-AAT--AATAGTA-T-T-C-GTCGAGCAGT---AT--------TAG---TATATAAATA---A--T---GATA-T-TTTTAATTAACATATCT----ATGTATTAGT----------------------ATGT-GA-ATTGTTATAC-----GTAATTTATCAGATTGTATC-----------T----GCATTTG----AAA-----------GCTTTTGTCC-AAAATGATGCTAATTTTGTTAACAACGATTTTCGGTTTGTATTTAATAAA-TC-TATAAACTTTACCATACTTGGTCGTCCGGTGTAATA---TGTTTGTATATATTCATCTCTTATTTGATTGTAGATTGGACAA----ACAATGATAAAATTCATGNAGGTCAT---TGNTGACGTGATTACAA-A-CAAACTAAAATCGTTATGTACGGGTATGGAATAGTTCAGACTGTTCATGAAACGTTCTGTAATGACGAGTTGGNCGGCAACGCCATAGGGCTAATCCTGAAGTGCAGACTATATATCTGATTACTTCAGAATNACCCTTTACAACGTAACGTAGATGTTGATCGTGTAATCAACGTGTTTGCGTCAT--GCAAATGCAGAAAATAAGTT-------------------------------------GCATTGCGGCACATATGAACANTCCTCATCAGTACTGTATG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): AAGTTTTATGTAGATATTTGCAAAATATTATCCAAATTGATGTACGTTTTATTGATTTGTTTATTAATAAGAAAAGTATATATTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTC
Alignments
lowQualScore : 111111111111111111111111111111111
lowQualScore : 2222222222 222222222 222222222222 111 11 444444444444444444444444444444444 4444444444444444444444444444444444444444 111111 1111111111111 11111 11111111111111111111 1111 11111111 44444444444444444444444 111111 33333333 111 444444444444444444444444444444444
lowQualScore : 4 1 0 0 1 5 8888888888 000000000 2 0 555555555555 1 33 77 1 6 6 6 6 1 222 8 8 6 8 8 0 1 99 5 3 5 0 4 1 2 4 777 2 666666666666666666666666666666666 888888 7777 1 1 3333333333333333333333333333333333333333 66666 1 5 999999 22 44444 22 1 9999999999999 1 66666666 7777777777 00000 66666666666666666666 0 22 2 2222 2 4 2 4 2 444 99999999 444 444 33 444 666 5555 6666 33 00000000 2 33 44444444444444444444444 0 555 111111 3 2 2 3 3 555 4 77777 3 1 4 4 0 0 777 33 44444444 1 111 22 1 1 5 5 0 11 5 1 3 0 1 0 99 999999999999999999999999999999999 1 1
lowQualScore : . . . . . . .......... ......... . . ............ . .. .. . . . . . . ... . . . . . . . .. . . . . . . . . ... . ................................. ...... .... . . ........................................ ..... . . ...... .. ..... .. . ............. . ........ .......... ..... .................... . .. . .... . . . . . ... ........ ... ... .. ... ... .... .... .. ........ . .. ....................... . ... ...... . . . . . ... . ..... . . . . . . ... .. ........ . ... .. . . . . . .. . . . . . . .. ................................. . .
lowQualScore : 0 4 7 4 7 0 5555555555 000000000 5 1 222222222222 3 33 99 4 7 7 7 7 0 666 0 0 0 0 0 8 7 00 0 1 0 8 4 1 0 4 888 9 333333333333333333333333333333333 777777 7777 5 8 7777777777777777777777777777777777777777 77777 3 0 000000 66 88888 66 8 7777777777777 7 33333333 6666666666 44444 44444444444444444444 6 88 0 8888 4 0 0 0 5 444 11111111 444 444 44 444 111 7777 1111 99 44444444 9 99 88888888888888888888888 8 444 999999 1 6 5 1 1 888 8 55555 3 0 0 0 7 7 888 77 00000000 0 777 00 0 7 0 0 6 44 0 7 0 7 6 7 22 000000000000000000000000000000000 0 0
consensus : GATTTATACAAAACTGAATTCGGTTGCTTCGTGATCTTAGTCCAGTACATAATGGAACGCTCTTTAGAAATCACAGATATAGG-A----A-----CCTCAAAATATAAAG---------ATGACATTACCTGATTACAACTT--AA-------GAGTTTAATACATTGGAAAGAGAGTTATATAGAATAGAGAAAAATA--TATTTGTAAATATATAT-TTTATCTTAA-CAAGGGAGGA-TG-TTATATTATTGTAATTTGAN-TTTT-T-GTATTATATAAAAAATAT-GAATTGGTTTATTTT-TGTAAAGATGCAGTTAAAACGATATGCAAAGGTCAAAG-GTGTCAACTTAAGGAGATGCGATAGCAGGATAATTAGCCATGGA-CTTTGTGTCATTCAGAAATGTTAGGTCGTGTTGTTGGTAAGATATGTG-CGTGTTTAATGTAGAGTTAGTAAATAA-GAAT---TGTTTATATGTCTCTCCAGGTTTGTCATATAATGTTGGTGATGATATAATATT---------GT----------AC----------AGAACAGA----A-ATTTTATTT----AGACTTGAGCATCAANANTCATCGTTAN-A----------TAC-----------A-----AACATTTTC-AATGCATGCAATGTGATGTTTACAATAT-A-AA-ATACAT--AG-----TTC--TAAATCAA-TA--------T----TG-GTGAGA--------G----------TGG-----TTT---------TA---------AACAAAATCATATT--GCAAAATCTAGT-A--ATAATAGTA-T-T-C-GTCGAGCAGT---AT--------TAG---TATATAAATA---A--T---GATA-T-TT----TTAA----TTAA--CAT--------ATCT--ATGTA-------T-----TA----GTATGTGAATT---GT------TAT-ACGTAATTTA-T-CA---GATTGTATCT----GCATTTGAAAGCTTTTGTCC-AAAATGATGCTAATTTTGTTAACAACGATTTTCGGTTTGTATTTAATAAA-TC-TATAAACTTTACCATACTTGGTCGTCCGGTGTAATA---TGTTTGTATATATTCATCTCTTATTTGATTGTAGATTGGACAA----ACAATGATAAAATTCATGNAGGTCAT---TGNTGACGTGATTACAA-A-CAAACTAAAATCGTTATGTACGGGTATGGAATAGTTCAGACTGTTCATGAAACGTTCTGTAATGACGAGTTGGNCGGCAACGCCATAGGGCTAATCCTGAAGTGCAGACTATATATCTGATTACTTCAGAATNACCCTTTACAACGTAACGTAGATGTTGATCGTGTAATCAACGTGTTTGCGTCAT--GCAAATGCAGAAA-------ATT----A-------AAGTGACTTTCCGCATTGCGGCACATATGAACANTCCTCATCAGTACTGTATG
Reference ( family-452 ) : GATTTATACAAAACTGAATTCGGTTGCTTCGTGATCTTAGTCCAGTACATAATGGAACGCTCTTTAGAAATCACAGATATAGG-A----A-----CCTCAAAATATAAAG---------ATGACATTACCTGATTACAACTT--AA-------GAGTTTAATACATTGGAAAGAGAGTTATATAGAATAGAGAAAAATA--TATTTGTAAATATATAT-TTTATCTTAA-CAAGGGAGGA-TG-TTATATTATTGTAATTTGAN-TTTT-T-GTATTATATAAAAAATAT-GAATTGGTTTATTTT-TGTAAAGATGCAGTTAAAACGATATGCAAAGGTCAAAG-GTGTCAACTTAAGGAGATGCGATAGCAGGATAATTAGCCATGGA-CTTTGTGTCATTCAGAAATGTTAGGTCGTGTTGTTGGTAAGATATGTG-CGTGTTTAATGTAGAGTTAGTAAATAA-GAAT---TGTTTATATGTCTCTCCAGGTTTGTCATATAATGTTGGTGATGATATAATATT---------GT----------AC----------AGAACAGA----A-ATTTTATTT----AGACTTGAGCATCAANANTCATCGTTAN-A----------TAC-----------A-----AACATTTTC-AATGCATGCAATGTGATGTTTACAATAT-A-AA-ATACAT--AG-----TTC--TAAATCAA-TA--------T----TG-GTGAGA--------G----------TGG-----TTT---------TA---------AACAAAATCATATT--GCAAAATCTAGT-A--ATAATAGTA-T-T-C-GTCGAGCAGT---AT--------TAG---TATATAAATA---A--T---GATA-T-TT----TTAA----TTAA--CAT--------ATCT--ATGTA-------T-----TA----GTATGTGAATT---GT------TAT-ACGTAATTTA-T-CA---GATTGTATCT----GCATTTGAAAGCTTTTGTCC-AAAATGATGCTAATTTTGTTAACAACGATTTTCGGTTTGTATTTAATAAA-TC-TATAAACTTTACCATACTTGGTCGTCCGGTGTAATA---TGTTTGTATATATTCATCTCTTATTTGATTGTAGATTGGACAA----ACAATGATAAAATTCATGNAGGTCAT---TGNTGACGTGATTACAA-A-CAAACTAAAATCGTTATGTACGGGTATGGAATAGTTCAGACTGTTCATGAAACGTTCTGTAATGACGAGTTGGNCGGCAACGCCATAGGGCTAATCCTGAAGTGCAGACTATATATCTGATTACTTCAGAATNACCCTTTACAACGTAACGTAGATGTTGATCGTGTAATCAACGTGTTTGCGTCAT--GCAAATGCAGAAA-------AT-------------AAGT-------TGCATTGCGGCACATATGAACANTCCTCATCAGTACTGTATG
gi|1 : GATTTATATAAAATTGAATTCGGTTGCGCCATGATCTTAGTCCAGTACATAATGGAACGCTATTTAAAAATCACAGATATATG-A----A-----CCTCAAAATATAAAG---------ATGACATTACCTGATTACAACTT--AA-------GAGTTAAATACATTGGAAAGAGAGTTATATAGAAAAGAGAAAAAGA--TATTTGTAAATATATAT-TTTATCTAAA-CAAGGGAGGA-TG-TTATATTATTGTAATTTGGC-TTTT-TTGTATTATATAAAATATAT-GAATTTGTTTATTTT-TGTAAAGATGCAGTTAAAACAATATGCAAAGGTCAAAG-GTGTCAATTTAAGGAGATGTGACAGCAGGATAATAAGCCACTGA-CTTTATGTCATTCAAAAATGTTAGGTCGTGTTGTTGGTAAGATATGTG-CGTGTTTAATGTACAGTTA---AATAA-GAATAATTGTTTATATGTCTCCCTAGGTTTGTCATATAATGTTGGTGATGATATAGTATT---------GT----------NN----------NNNNNNNN----N-NNNNNNNNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNN-N----------NNN-----------N-----NNNNNNNNN-NNNNNNNNNNNTCTGATGTCTACAATAC-A-AA-ATATAT--TG-----TTC--AAAATCAA-TA--------T----TG-GTGAGA--------G----------TGG-----TTT---------TA---------AACAAAATCATTTA--GCAAAATTTAGT-A--A-AATAGTA-T-T-C-GTCGACCAGT---AT--------TAG---TATGTCAATA---A--T---GATA-T-TT----TTAA----TTAA--CAT--------ATCT--ATGTAATA----T-----CA----GTATGTGAATT---GT------TAC-ACGTAATTGA-T-CA---GATTGTATCT----GCATTTGAAAGCTTTTGTCC-AAAATGATGCTACTTTTGTTAACAACGATTTTCGGTTTGTATTTAATAAA-TC-TATAAACTTTACCGTACTTGGTCGTCCGGTGTAATA---TGTTTGAATATATGCAACTCTTATTTGATTGTAGATTGGACAA----ACAATGATAAAATTGATGTAGGTCCT---TGATGACGTGATTACAA-A-CAAAC---AACCGTTATGTACGGGTATGGACTAGTTCAGA-----CATGAAATGTTCTGTAATGACGTGTTGGTCGGCAACGCCATAGGGCTAATCCTGAAGTGCAGACTATATATCTGATTACTTCAGAATAACCCTTTACAACGTAAAGTAGATGTTGATCATGTGATCACCGTGTTTGCGTCAT--GCAAATGCAGAAACCTAGAGATTTTCTA-------AAGTGACTTTCCACATGGCATCACATATGAACACTCCTCATCAGTACTGTATG
gi|10 : ACAT--AG-----ATC--TAAATCAA-TA--------TAT--TA-ACGAGG--------G----------CGA-----ATTA--------TA---------AACAAAATCATATC--GCAATATCCAAT-A--ATAGTAATA-TCT-C-GTCAACCAAT---AT--------TAT---TATATAAATG---A--T---AATA-T-TTTTAGTTAACATATTAATGCATGAAATGTCATCTTAATGTAGATATTTT-----CATATCGTGTGTAACTT---GTACTTTTTATTACCCAATCTAATGCATTTG-TTGTAAAT----TCGTTTCGATACTTTTGTTC-GAA-TGATACTTAATTTGTTAACAATGACTT-------GTATTTAACAAG-TC-TATAAACTGTCCCATATTTAGTCGTCTAGTGTAATAACATGTTGGTTTATATTCGTCTCTTATTTTATTGTAGTTAGGACAA----GCAATGATAAAATGAATGAATG-CATGTATATTGTAGTAAGGACAA-A-CAA
gi|11 : c-----AACATGTGC-AAAGCCTGCAATGAGATGTTTACAATAC-A-----TACAC--AG-----TTT--TAAACCAA-TA--------TAT--TG-ATGGGA--------G----------TGA-----TTTATATCATTTTA---------AACAAAATCATATT--GCAAAATCTAATTATTATAATAATA-T-TTC-GCCAAGCAAT---AT--------AAG---TTGATGAATA---A--C---TATA-T-CT----T-AG----TGAA--CAT--------ATGT--ATGT--------T-----TA---------TGAAAT---GG------TAT-ACACAATTTA-T-CG---GATTGTTTCT----GCATTTGAAAGCGTTTATCC-AAAATGATGCTAATTTTGTTAACAAGGATTTTCAATTTGTATT---TAAA-CCATATAAATGTTACTATAATTAGTCGCCTTGTGCAGTA---TGTTTGTATATATCCATCTCTTATTTGATTGTAGAAAGGACAATGATGTAATGATAt
gi|12 : C-----------A-----AATATTTTC-AATGCATAGAATGTGATGGTTACAATAT----T-ATACAT--AA-----ATA--TAGATCAA-TA--------T----TG-GTGAGA--------A----------TGG-----TTT---------T---------------------------CAAAAGCTAGT-A--ATAATAGTA-T-T-TAGTCAAGCAAT---AT--------TGG---TATATAGATA---A--T---CATAGTATT----TTAA----TTAA--CAT--------ACCT--ATGT--------------------GTCTGACAATTTACATG-----TAT-ACATAATTTA-T-CA---GATTG--TTTGAAAGCATTCGAAAGTTTTTGTCC-AATATGATGCTActagtcatttctttcatttcagtgt
gi|13 : -----------A-----AACATTTTC-AATGCATACAGTGAGATGGTTACAATAT-T-A---TACAT--AG-----TTC--CAAATCAA-TA--------T----TG-GTGAGA--------G----------TGG-----TTT---------TA---------AACAAAATCGTATT--GCAAAATCTAGT-A--ATAATAGTA-T-T-C-GTCAAGCAAT---AT--------TAG---TATATAAATA---A--TCATGGTA-T-TT----T-AA----TTAA--CAT--------AT----------------------------GTATGTGAAAT---GT------TAT-ACTTTATTTA-T-CA---GATTGTTTCT----GTATTTAAAAGCTTTTGTCC-AATATGATGGAAATATTGTTAACACCGATTTTTGGTTTGTATTTAATAAG-TC-TATAAACTTTACCACACTCGGTTGTTTTTTGTAAAA---TTTTGGTATTTATTCATCTCTTATTTGATTGTAGAtagtatacaattataaaactttaccgtcttttcatatacatcttacataattaacagcgataaacaaatgttggtttttatgttttccaatttaatggagaacatattaagtatggtagaattagtcat
gi|14 : C----------AGAACAAATAATACATTTTATTT----AGACTTGAGTATCA-----------TAA-A----------AAC-----------A-----AA---------ATACATGCAATGTGATGTTAACACTAT-A-AACATAGAT--AGTTTAATTC--TAAATCAA-TA--------TATAGTA-GTAAGT--------GATTATTGTTATGG-----TTA---------TA---------AACAAAACCATATT--GCAAAATACAAT-A--ATAATACTA-T-TGT-GTCATGCAAT---AT--------TAT---TATTGAAATA---C--T---GATA---TT----TTAT----TTGA--CAT--------TTCT--ATGTT-------TG----TG----GTA-------T---GT------TAT-TCGTTATTCA-T-CA----AT--TATCT----GCATTTCAAAGTTTTTGTTTAAAAATG-TGCTGATTTTGTTTTCAA-GGTTTT--GTTT
gi|15 : tacacagaaccgagCAG-A-CAAACTAAAATCGTTATGTTCGGGTATGAAATAGTTCAGACTGTTCATGGAATGTTCTGTAATGACCAGTTGGTCGGCAACACCATAGGGCTAATCCTGAAGTGCGGAC--TATATCAGATTACTTCAGAATCACACTGTACAACATAACATAGATGTTAATCGTGTAATCAACGTGTTTGCATCAC--GAAAATGCAGAAA-------Atg
gi|15 : CATTGCGGCACGTATGAACAATCCTCAACAATctacagtgtctctaaagtgacttatgaaatattctacttttccacattgcggcacgtatgaacaatcctcaacaat
gi|16 : cagacaaactaaaatcgttatgttcgggtatgaaatagttcagactgttcatggaatgttctgtaatgaccagttggtcggcaacaccatagggctaatcctgaagtgcggactatatcagattacttcagaatcacactgtacaacataacatagatgttaatcgtgtaatcaacgtgtttgcatcacgaaaatgcagaaaactacagtgtctctaaagtgacttatgaaatattctacttttcca--AG-----TTC--TAAATCAA-TA--------T----TG-GTATGA--------G----------TAG-----TTT---------TA---------AACAAAATCATATT--TCAAAAGCTGGT-A--GTAATAGAA-T-T-C-GTCAAGCAAT---ATAAATATAATAGAAATATATAAATT---ATCT---GGTA---TT----TTGA----TTAA--CAT--------ATAT--ATGTA-------------TA----------GAAAT---GT------TAT-ACAT-CTTTA-T-CA---GAGTGTTTCT----GCATTTGAAA-CTTCTGTCC-AATATGATGCTAATTTTGTTAATAACGA-TTTCGGTTTGTATTTAGTAAG-TC-TATCAACTTTACCATACTCGATCGTCCGGTG
gi|17 : c----------AGAACAGA----A-ATTCTATTT----AGA-TTGAGC-TCAACAG-CAGC-TTACCA----------TAC-----------A-------------C-AATGCATGCAATGCGATGTTTACAA----A-AC-ATAC----AA-----TTC--TAGACCAATTA--------C----TATGTTAAATAATTTTTA----------TGGC----TTT---------TA---------AAC--GGTCATGCT--GCATAA-CTAA--G--ATTATA-TATT-T-C-GTCAA--AGTGAAAT--------AAC---AACAGAAATA---A--T---AA
gi|18 : aatgtttgagttaatttttttatagactCATTTTC-AATGCATGCACTGTGATGTT-ACAATAT-T-A---TACAT--AG-----TTA--TGAATAAA-TA--------T----CG-GTGAGA--------G----------TGG-----TTT---------TA---------AACAAAATCATATT--TCAAAAGCTAGT-A--ATAATAGTATT-T-C-GTCACGCAAT---AT--------TAG---TATATAAATAATCA--T---GGTA---TT----TTAA----TTAA--CAT--------ATTT--AT----------------------GTATGTGAAAT---GT------AAT-ATATA--TTA-T-Cataac
gi|19 : atATAAAATTCG-ACACGTCAT---C-ATGACGT-ATT-CAACATCAAGCTAAAATCGTTATG-A-----ATGAAATAGTTCAGACTGTTTATGAACTGTTCTGTAATG
gi|2 : ttggtcgccatgccttgtattcccatttccattccggtaagttaatgttaagatATTTATACAAAACTGAATTCTGTTGCTTTGTGATCTTAATCAGATATATCATCGAACGCTATTTAGAAATCACATATATAGG-A----AATCTACCTTAAAATATAAAACATTCTATAATGACATAACCTGATTACAACTTTTAATACATGGGAGTTTA-TACATTGGAAAGAGAGCTATATAGAATAGAGAAAA-TA--TATTTGTTAATATATAT-TTTATCTTCA-CAAGGGAGGA-TG-CTATATTATTGTAATTGGAT-TTTTCT-TTTTTACATAAAAAGTAT-GAATTGGTTTATTTT-TGTATAGATGCAGTTAAAAAGATATGCAAATGTCAATTTGTGTCAACTTAAGGAGATGCGATTGCAGGATAATTAGCCATGGA-CTTTGTGTCATTTAGTAATGAAAGGTCGTGTTGTTGTTAAGATATGTG-CGTGTTTAATGTAGAGTTAGTAAATAA-GAAC---TGTTGATATATATATCCAGATTTGTCATATAATGTTGGTGATGATATAATATTTTNNNNNNNNN----------NN----------NNNNNNNN----N-NNNNNNNNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNN-N----------NNN-----------N-----NNNNNNNNN-NNNNNNNNNNNNNNNNTGTCTACAATAT-A-AA-GTATGT--AG-----TTC--TAAATCAA-TT--------A----TG-CTGAGA--------G----------TGGAGTGGTTT---------TA---------AACAAAGTCATATG--GCAAAATCTAAT-G--A-AATAGTA-T-T-C-GTCGAGAAGT---AT--------TAG---TATATAGATA---A--T---TATA-T-TT----TTAA----TTAA--CAT--------ATTT--ATGTA-------C-----TA----A---GTGAATT---GT------TAT-ACGTAATGTA-T-CA---GACTGT--CC-----CATTTGAAAGCTTTTGTCC-AAAATGTTGCTAATTTTGTTAACAACGATTTTCGGTTTGTATTTAATAAA-TC-CATAAACTTTACCATACTTGGTCGTCGTGTGTAATA---TGTTTGTATATATTCATCTCTTATTTGATTGTA--------AA----A----GATAAAATTCATAAAGGTTAT---TGTTGACGTGATTACAG-A-TAATCTAAAATCGTTATGTACGGGTATGGAATCATTCAGACTGTTCATGAAACGTTCCGAAATGACGAGTTGAACGGCAACGTTATAGGGCTAATCCTAAAATCAAGACTATATATCTGATTAC--------------TTACAACATAACAAAGATGTTGTTCGTATATTCAAAGTGTTTGCGTTAT--GCAAATGCACAAA-------------------------T-------TGCATTGCGGCACATATGAACAATCCTCATCAGTACTGTATGttctaaacttaaaaaa
gi|21 : ----------AC----------AGAACAGA----A-ATTTTATTTTTCGAGACATGAGCATCA-------TCGTCAA-A----------GAC-----------A-----AACATTT-C-AATGCATGCAATGTGACAGTTACAATATTATAC-ATACATGTAG-----TTC--TAAATCAA-TA--------T----TG-ATGATA--------G----------TGG-----TTT---------Tgg
gi|22 : gaacagaATTTATGCAAAACTGAATTCGGTTGCTTCGTGATCTTAATCAAGT--ATAATGGAACGCTCTTTAGAAATCACATATATAGGCAATCTA-----CCTTAAAATATAAAA---------ATGACATTAC---ATTACAACT---------------TTCAATACATTGGA
gi|23 : CAA-TACA------T----CA-GTGAGA--------T----------TGA-----TTTCATTTTTTGTA---------AACAAAATCATATT--GT------TAG-------AA------------GTCAAGCAAT---AG--------TAA---TATATGAACA---A--A---GATA-T--T----TTAG----TTTA--CAT--------ATTT--ATTCA-------TG----TA----ATATAT
gi|24 : aaGCATTACGGCACATATGAACAATTTTCATCAatatatatatatttc
gi|25 : acgtgagtgcaatgaaacgcatcaaaaactatctgcgttcaacaattagttccgacttaagaaaacttctacttttcc-ATACAC--AA-----TGC--TAGGTCAA-TACATGTATAT----TG-GCGAAA--------G----------AGG-----TTT---------CATTGATTTGTAACAAAATCATACT--GCAGAATCTAAT-ACGATTATA-TA-T-T-
gi|26 : -ATACAC--AA-----TGC--TAGGTCAA-TACATGTATAT----TG-GCGAAA--------G----------AGG-----TTT---------CATTGATTTGTAACAAAATCATACT--GCAGAATCTAAT-ACGATTATA-TA-T-T-t
gi|27 : TGTTATGGTTACAATAT-T-A---TACAT--AG-----ATC--TAAATCAA-TA--------G----TG--TAAAT--------T----------TGG-----TTT---------TA---------AAAAAAATTATATT--GCAAAATGTAGT-A--TCAATAGTA-T-T-t
gi|28 : TTTTGTTGG----GATTT-CGGGTAGTAATTA-TAAACTC-TATAAATTGTACGATAATTGGTCGTCTAGTGTGATA---TATTTGTATATAt
gi|29 : GACGAGTTGTATGGCAACGCCATTGTGCTAGTCCTGAAGTGCAGAC--CATATCTGATTACATCAGACTCACCCTGTACAACG
gi|3 : ATTTATCCAAAATTTAATTCAGTTGCTTCATG------------TACATAATGAAATGCCTTTTAGAAATCACAGATTTAGG-A----A-----CCTCGAAATATAAAG---------ATGACATTACCTGATTACAACTT--AAA------GACTTTAATACATTGGAAAGAGAGTTATATAGAATAGAGAAAAATA--TATTTGTAAATATATAT-TTTATCTAAA-CAAGGGAGAA-TG-TTATACTA--GTAA
gi|3 : AGTAAAAA--ATATGCAAAGGTCAAAG-GTGTCAATTCAAGGAGATGTGATAGCAGGATAATTAGCCATGGA-CTTTGTGTCATTCAGAAATGTTAGATTGTGCTTTTGGTAAGATATGTG-CGTGTTTAATGTAGAGTAAGTAAACAA-GAAT---TGTTAATATGTCTCTCCTGGTTTGTCATATAATGTTGGTGATGATATAATATT---------AT----------NN----------NNNNNNNN----N-NNNNNNNNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNN-N----------NNN-----------NNNNNNAACATTTTTTAATATGTGCAATGTGATGTTTACAATAT-A-AA-ATGTTT--TG-----TTC--TAAATCAA-TA--------T----TG-GTGAGA--------G----------CGG-----TTT---------TA---------AACAAAATCATTTT--TAAACATCTAGT-A--AAAAAAGTA-T-T-C-GTCGAGGAGT---AT--------TAG---TATAAAAGTA---A--T---GATA-T-TT----TTAA----TTAA--CAT--------ATTT--ATGT--------T-----C------TATGTGAATT---GT------TAC-ACGTAATTTA-T-CA---GCGTGTGTCT----GCATTTGAAAGCTTTTGTCC-AAAATGATGCTACTTTTGTTAACAACGAATTTCGGTTTTAATTTAACAAA-TA-TATAAACT-----GCACTTGGTCGTCCGGTGTAATA---TGTTTGTATATATGGATCTCTTATTTGATTGTAGATTGGACAA--------TGATAAAATTCATGTAGGTCCT---TGATGGCGTGACTGCAA-A-CACACTAAAATGGTTATGTACGGGTATGGAATAGTTCAGACTGTTCATGAAATGTTCTGTAATGACGAGTTAATCGGCAACACCAAAGGGCTACTCCAGAAGTGCAGACTATAAATCTA---ACTTCAGGATCACCCTATACAACGTAACATAGATGTTGATCGTGTAATC-ACGTATTTGCGTCAT--GCAAATGCAGAAA-------AT-------------AAGA-------T--ATTGCGGAGCTTATGAACACTCCTCATCAGTACTGTATGaaaatatgcaaaggtcaaaggtgtcaattcaaggagatgtgatagcaggataattagccatggactttgtgtcattcagaaatgttagattgtgcttttggtaagatatgtgcgtgtttaatgtagagtaagtaaacaagaattgttaatatgtctctcctggtttgtcatataatgttggtgatgatataatattatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacattttttaatatgtgcaatgtgatgtttacaatataaaatgttttgttctaaatcaatattggtgagagcggttttaaacaaaatcatttttaaacatctagtaaaaaaagtattcgtcgaggagtattagtataaaagtaatgatatttttaattaacatatttatgttctatgtgaattgttacacgtaatttatcagcgtgtgtctgcatttgaaagcttttgtccaaaatgatgctacttttgttaacaacgaatttcggttttaatttaacaaatatataaactgcacttggtcgtccggtgtaatatgtttgtatatatggatctcttatttgattgtagattggacaatgataaaattcatgtaggtccttgatggcgtgactgcaaacacactaaaatggttatgtacgggtatggaatagttcagactgttcatgaaatgttctgtaatgacgagttaatcggcaacaccaaagggctactccagaagtgcagactataaatctaacttcaggatcaccctatacaacgtaacatagatgttgatcgtgtaatcacgtatttgcgtcatgcaaatgcagaaaataagatattgcggagcttatgaacactcctcatcagtactgtatgag
gi|30 : atttatccaaaatttaattcagttgcttcatgtacataatgaaatgccttttagaaatcacagatttaggaacctcgaaatataaagatgacattacctgattacaacttaaagactttaatacattggaaagagagttatatagaatagagaaaaatatatttgtaaatatatattttatctaaacaagggagaatgttatactTAAGATATGTG-CGTGTTTGATGTAAAGAAAGTA----------------------GTCTCTCCAGGTTTGTCATATAATGTTGGTGATGATATAAag
gi|31 : tAC-----------A-----AACATTTTC-AGTGTATGCAATGTAATAGTTACACTAT----T-ATACAT--A-------TCAATGAATTAA--A--------T----TA-GTG
gi|32 : -GTAAGA--------G----------TGG-----TTT---------TA---------AACAAAATCATATT--GCAAAATCTAAT-A--AAAAAAGTA-T-T-gtt
gi|4 : -GTGTCAACTTAAGGAGATGTGATTACAGGATAATTAGCCATGGA-CTTTGTGTCATTTAGTAATGTAAGGTCGTGTTGTTGGTAAGATATGTG-CGTGTTTAATGTAGAGCTAGTAAATAA-ACAC---TGTTTATATATATC--CAGATTTGTCATATAATGTTGGTGATGATATAATATT---------GT----------NN----------NNNNNNNN----N-NNNNNNNNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNTGC-----------A-----AACATTTTT-AATGTATGCAATGTGATGTCTACAATAT-A-AA-GTATGT--AG-----TTC--TAAATCAA-TT--------A----TG-CTGAGA--------G----------TGGAGTGGTTT---------TA---------AACAAAATCATACG--GCAAAATCTAAT-G--A-AATAGTA-T-T-C-GTCGAGCAGA---AT--------TAA---TATATAAATA---A--T---TATA-T-TT----TTAA----TTAA--CAT--------ATTT--ATGTA-------C-----TA-------TGTGAATT---GT------TAT-ACGTAATTTA-T-CA---GACTGTATCT----GTATTTGAAAGCCTTTGTCC-AAAATTTTGCTAATTTTGTTAACAATGGTTTTCGGTTTGTATTTAATAAA-TC-TATAAACTTTACCATACTTGGTCGTTCGGTGTAATA---TGTTTGTATATATTCATCTCTTATTTGATTGTAGAATGGACAA--------TGATAAAATTCATATAGGTCAT---TGTTGACGTGATAACAA-A-TAATCTAAAATCGTTATGTACGTGTATGAAATTATTCAGACTGTTCATGAAACGTTCTGAAATGACGAGTTTAAGGGCAACGTTATAGGGCTAATCCTAAAATCCAGACTATATATCTAATTACTTCAGAATAACCCTTTACAACGTAACATAGATGTTGATCGTATATTCAAAGTGTTTGCGTCAT--GCAAATGCAGAAA-------------------------T-------TGCATTGCGGCACATATGAACAGTTTTCATCAGTACTGTATGt
gi|5 : caatgtcaatttGATTTATATAAAACTGAAATCATTCTCTTCATGATCTTAGTCCAGTACATAATGGTACGCTTTTTAGAAAGCACAGATATAGA-A----A-----CTTCAAAACACAAAG---------ATGACATTACCTGATTACAACTT--AA-------GAGTTTGATACATTGGAAAGAGAGTTATATAGAATAGAGAAAAAAAATTTTTTGTAAATATATATATTTATCTTAA-CAAGGGAAAC-TA-TTATATTATTGACGTTT----TTTT-T-GTATTATATAAAA-ATAT-GAATTGGTTTATTTT-TGTAAATATGCAATAAAAAAGATAGGCAAATATCAAAG-GTTTCAATTTAAGGATATGTGATAGCAGGATAATTTGCCATGGA-CTTTGTGTCATTCAGAAATGATAGGTCGTTATGTTGGTAAGATATGTG-CGAGTTTAATGTAGAGTTAGTAAATAA-GAAT---TGTCTATATGTCTTTTCAGGTTTGTCATATAATATTGGTGATGATATAATATT---------ATNNNNNNNNNNNN----------NNNNNNNN----N-NNNNNNNNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNN-N----------TAC-----------A-----AACATTTTT-AATGCATGCAATCTGATGTCTACAATAT-A-AA-ATATAT--AG-----TTC--TAAATAAA-TA--------T----TA-TTGAGC--------G----------TGG-----TTT---------TA---------AACAAAATCATTTT--GCAAAATCTAGT-A--A-AATAATA-T-T-G-AACGAGCAGT---AT--------TAG---TATATAAATA---A--T---GATA-T-CT----TTAA----TTAA--CAT--------ATCT--ATGTA-------CTATCATA----GTATGTGCATT---GT------TAC-ACGTAATTTA-T-CA---GATTGTATCT----GCATTTGAAAATTTTTGTCC-AAAATGATGCTAATTATGTTGACAACGGTTTTCgg
gi|6 : ATTTATACAAAATTGAAGTCTATTGTTTCATGATCTTAGCCCAGTATATAATGGAACGCTCTTTAGAAATCACAGATTTAGG-A----A-----CCTCAAGAAATAAAA---------ATGACATTACCT--------------------------TTAATACATTGGAAAGAGAGTTATATAGAATAGAGACAAATT--CATTTGTAAATACATAT-TTTATCTTAA-AAATGGAGGA-TACTTA-ATTATTACAATTAGAA--TAT-T-GCATTGTATAAGAAATAT-GAATTGGTTTATTTA-TGTAAAGATGCAGTT-AAAC--TATGCAATGGCCAAAG-GTGTCAACTTAATGAGATACGATAGCAGCATAATTAGTAATGGT-CTTTGTGTCATTCAGAAATGTTAGGCAG---TGTTGGTAATATATGTA-CGTGTTTAATATAGAGTCA-T-AATAACGAAT---TGTTTATATGTCTCTACGGGTTTGTCATATACTGTTGGTGATGCTCTTATATT---------GT----------NN----------NNNNNNNN----N-NNNNNNNNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNN-N----------NNNNNNNNNNNNNGA-----AACATTTTT-TATGCATGTACTCTGATGTCTGCAATTT-A-AA-ACATAT--AG-----TTC--TAAATCAA-TA--------T----TG-GTGAGA--------G----------TGG-----TTT---------TA---------AACAAAATt
gi|7 : -GTTAGA--------G----------TGG-----TTT---------TA---------A-CAAAATCATTTT--GCAAAATCTTGT-A--A-AATAGTA-T-T-C-GTCGAGCAGT---AT--------TAG---TATATAAATA---A--T---GATA-T-TT----TTAaa
gi|7 : GTA-------T-----TA----GTATATAAATA---AT------GAT-AT-T--TTTA-T-CA---GATTCTATCT-----CATTTAAAAGCTTTTGTCC-AAAATGACGCTAATTATGTTAACAACGATTTTCGGTATGTATTTAATAGA-TC-TATAAACTTTACAA-ACTTGGTCGGTCGGTGTAATA---TGTTTGTATATATTCATCTCTTATTTGATTGTAGATTGGACAA----ACCATGAtcagattctatctcatttaaaagcttttgtccaaaatgacgctaattatgttaacaacgattttcggtatgtatttaatagatctataaactttacaaacttggtcggtcggtgtaatatgtttgtatatattcatctcttatttgattgtagattggacaaaccatgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacaaactaaaatcgttatgtacgggtatggaatagatcagtctggtcatgaaacgttctgtaatgacaggttggttggcaacgctttaatcctgtagtgcagactatatatctgattacttcagaataacgctttataatgcaacgtagctgttgatcgtgtaatcaccgtgtttgcgtcataaaaaaatgcagaaaactagagattttctaaagtgactttccgcattgcggcacaaatgatcactcctaataagtactgtatgggt
gi|7 : gttagagtggttttaacaaaatcattttgcaaaatcttgtaaaatagtattcgtcgagcaAA-A-CAAACTAAAATCGTTATGTACGGGTATGGAATAGATCAGTCTGGTCATGAAACGTTCTGTAATGACAGGTTGGTTGGCAACGCT------TTAATCCTGTAGTGCAGACTATATATCTGATTACTTCAGAATAACGCTTTATAATGCAACGTAGCTGTTGATCGTGTAATCACCGTGTTTGCGTCATAAAAAAATGCAGAAA-------ACTAGAGATTTTCTAAAGTGACTTTCCGCATTGCGGCACAAATGATCACTCCTAATAAGTACTGTATGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacaaactaaaatcgttatgtacgggtatggaatagatcagtctggtcatgaaacgttctgtaatgacaggttggttggcaacgctttaatcctgtagtgcagactatatatctgattacttcagaataacgctttataatgcaacgtagctgttgatcgtgtaatcaccgtgtttgcgtcataaaaaaatgcagaaaactagagattttctaaagtgactttccgcattgcggcacaaatgatcactcctaataagtactgtatgggt
gi|8 : gttagagtggttttaacaaaatcattttgcaaaatcttgtaaaatagtattcgtcgagcagtattagtatataaataatgatatttttatcagattctatctcatttaaaagcttttgtccaaaatgacgctaattatgttaacaacgattttcggtatgtatttaatagatctataaactttacaaacttggtcggtcggtgtaatatgtttgtatatattcatctcttatttgattgtagattggacaaaccatgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTGATCTTAGCTCAGTATATAATAGAACGCTCTTTAGAAATCATATATATAGG-A----AATCTACCTCAAAATATAAAG---------ATGACATTACCTCATTACAACTT--AA-------CAGTTCAATACATTAGAAAGAGAGTAATATAAAGTAGAGACAACAA--TGT-----AATATATGT-TTTATCTTAAACAAGGGAGGAATG-TTATATTATTGTAATTTGAAATTTT-T-ATATTAAATAAAAAATCTTGAATTGGTTTATTTTGTGTAA-GCTGCAGTTAAAAT-ATATGCAAAGGTCAAAG-GTGTCAACTTAATGAGATGAGATAACAAGATAATTAGCTTCGGAACTTCGTGTCATTTAGAACTGACAGGTCGTGTTGTGGGTAAGATAT-TGACATGTTTAATGTAGAGTTAGTTATTAA-GAAT---TGTTTATATGTCTCT--AG--TTGTCATATAATGTTGGTGATGTTTTAATATT---------GT----------ACAGTAC-----AGAACAGA----A-ATTTTATTT----AGACTTGACCATCAAAACTCATCGTTAT-A----------TAC-----------A-----AACACTTGT-AACGCACGCAATGTGATGTTTACAATAT----T-ATACAT--AG-----TTC--ATAATCCA-TA--------T----TG-GTAAGA--------G----------TGG-----TTT---------TG---------AACAAAggt
gi|9 : ttaATTTATATAAAATTGAATTCAGTTGCTTAATGAT
gi|9 : GATATAGG-A----G-----CCTCAAAATATAAAG---------ATGATATTACCTGATTAC-------AA-------GAGATTGATACATTGGAAAGAGGGTTATATAGAATAGAG--AAATA--TATT--TAAACAAATAataggagcctcaaaatataaagatgatattacctgattacaagagattgatacattggaaagagggttatatagaatagagaaatatatttaaacaaatacaaagatcaaaggtgtcaattgaaggagatgtgatagcaggataattagccatagactgtgtgtcatttaggaatgttaggtcgtgttgctggtaagacatgtgactgtttaatgtagagctagtaaataagaattgttaatgtctctccaggtttgtcatataattttggtgacgatataatattgtacgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatacaaacattttctaatgtatgcaatctgatgtctacaatatcaaatatatagttctaaatcaatattggtgagagtggttttaaacaaaatcatttcagcaaaatcttgtgaaatagtattcgtcgagcagtattagtatataaataatgatgtgtttaattaacatatctatatact
gi|9 : atttatataaaattgaattcagttgcttaatTTTAAACAA-ATACAAAGATCAAAG-GTGTCAATTGAAGGAGATGTGATAGCAGGATAATTAGCCATAGA-CTGTGTGTCATTTAGGAATGTTAGGTCGTGTTGCTGGTAAGACATGTG-ACTGTTTAATGTAGAGCTAGTAAATAA-GAAT---TG-TTA-ATGTCTCTCCAGGTTTGTCATATAATTTTGGTGACGATATAATATT---------GT----------ACGANNNNNNNNNNNNNNNN----N-NNNNNNNNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNA-A----------TAC-----------A-----AACATTTTCTAATGTATGCAATCTGATGTCTACAATAT-C-AA-ATATAT--AG-----TTC--TAAATCAA-TA--------T----TG-GTGAGA--------G----------TGG-----TTT---------TA---------AACAAAATCAT-TTCAGCAAAATCTTGT-G--A-AATAGTA-T-T-C-GTCGAGCAGT---AT--------TAG---TATATAAATA---A--T---GATG-T-GT----TTAA----TTAA--CAT--------ATCT--ATATA-------C-----Tcaaagatcaaaggtgtcaattgaaggagatgtgatagcaggataattagccatagactgtgtgtcatttaggaatgttaggtcgtgttgctggtaagacatgtgactgtttaatgtagagctagtaaataagaattgttaatgtctctccaggtttgtcatataattttggtgacgatataatattgtacgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatacaaacattttctaatgtatgcaatctgatgtctacaatatcaaatatatagttctaaatcaatattggtgagagtggttttaaacaaaatcatttcagcaaaatcttgtgaaatagtattcgtcgagcagtattagtatataaataatgatgtgtttaattaacatatctatatact
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): AAGTTTTATGTAGATATTTGCAAAATATTATCCAAATTGATGTACGTTTTATTGATTTGTTTATTAATAAGAAAAGTATATATTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTC