lowQualScore : 1111111111111 11111111111111111
lowQualScore : 1 1 11 3333333333333 1 1 1 1 22 333 6666666666 22 1 2222222 1 33 11 555555555555 4444444 222222 11 00000000000000000 111 11 1 11 111 1 3 1 1 111 222222 1111 1111 1 22222222 22
lowQualScore : 1 7 11 88 6 3333333333333 3 5 4 0 7 7 0 55 2 999 3333333333 6 0 6 7 11 9 5 6 6 6666666 7 3 3 11 8 9 0 1 11 66 0 999999999999 3 6 7777777 0 2 2 888888 1 0 8 88 00000000000000000 6 6 22 6 666 77 0 6 3 6 1 1 0 6 88 1 6 6 222 6 5 0 0 0 0 5 0 6 0 0 0 22 3 6 1 5 1 2 0 111 888888 7 1 999 11 3 0 4444 5555 5 0 0 5 8 44444444 3 11 3
lowQualScore : . . .. .. . ............. . . . . . . . .. . ... .......... . . . . .. . . . . ....... . . . .. . . . . .. .. . ............ . . ....... . . . ...... . . . .. ................. . . .. . ... .. . . . . . . . . .. . . . ... . . . . . . . . . . . . .. . . . . . . . ... ...... . . ... .. . . .... .... . . . . . ........ . .. .
lowQualScore : 5 0 77 33 0 0000000000000 5 0 0 5 8 0 0 00 0 000 1111111111 0 7 7 3 77 0 0 0 0 9999999 0 2 2 00 8 8 2 2 22 00 2 222222222222 2 0 3333333 2 2 5 888888 0 8 0 44 88888888888888888 2 0 00 0 444 00 0 0 0 0 4 4 8 0 55 7 7 7 555 7 0 8 2 8 8 6 6 0 6 6 8 44 0 0 8 0 4 5 2 000 888888 8 4 222 66 5 7 2222 6666 0 2 8 4 0 22222222 3 00 3
consensus : NNNNACATGCGCAGTCGNAAACCAAGAATTACGTA--AACAATTGTGACCTTGACCAT----TAACCCCATGTGTACAGCGCANGANGGCGCATGATACATGGATGACATCGAGCAACGGAATCAGATAGGAAAGAACGCAAGAAAGAACCAATGC-ACAAAACACGCATGCACAGTATGATTCCCGTT---AAAAAAC--A-------CAACAAAATAATCTTTTCACGCAACGCAACAAAAAT-GAAAATCACCATTCCAATCAGCCGATACA----ACATTCGTTGTTTACATAAAAGTTAATTAAATTTAACCAATGGTCCGATTTAGCTCGTTGTGAACTAC-ATTGCATTATAAAATATTTACTTACTGCATTGTACGACATTTCAACTAAACAAAATGTACAGTAGAT-AAA---AAAAAAGAGAGAAAACAAAGT------AAACAAACGACATCGAATGGCGTTAC-CCTTTGGAAAACTTGGCACATCGCAAAACAATAGTTCAAATAAGTTTTGATTGTTATAAATCATTATTATGCAA-------CTTAGCTAATCAATNATAATACCTACCTTTCCTCGATATATAATGCGATCTAGATAAAGTAAAATATTCAAAATACCGCGTCCAAAACCATCAACAGCTGTATCCAAGATGGCGGAAATCTTTGCATGGAAAACGCGCGAATTTTACGTATGCAAATGACATGACGTCATGCC-CTTCCATCAAT-AAA-T-TTT-CGCCCTGGAAATTCCGA-TTTTAACAGTGAGGCCTAATTTTCGTGTTTGACATTCCTATGCTTTGAAAAAGCAATGAAAAAAATAAAACACATTTGAAAAACAACACCTGTGACAAATAGAAATATTGCACTTGAGGTATTACATATTTCTGAACTTCACTTCCGTTAATATACACGAGGGAGGCACATAATCCACGGTTCACCAATCACTCT-T-TATCTCTA------CTGAACAAAATAACTGGGCCAAATTCGAAAATAGATATAGAGCTTTA----TATGATAATATAG-TAATGACTCCATATTCGAAGAAATATAAATAATGATAATTCTTTAAT--------GATAACCGTACTATGAATTAATAACGCTCTATAGAA
Reference ( gi|1 ) : ACTAACATGCGCAGTCGTAAACCAAGTATTACATA--AGCAATTGTGACCTTGACCATTGTGTGA--CCATGTGTACAGGGCAAGATGGCGCACGATACATGGATGACATCAAGCAATGGAAACAGATAGGAAAGAACGCAAGAAAGAACCAATGC-ACAAAACACTAATGCACAGTACGATTCCCGTTC--AAAAAAC--G-------CAACAAAGTAATCCTTTCACGCAACACAACAAAAAA-GAAAACCACCAGTCCAGTCAGCTGATTCA----ACATTCGATGTTTACATAAAAGTTAATTAAATTGAACCAATGGTCCAATTCAGCTCGTTGTGAACTACAATTCCATTATAAAATATTTACTTACTGCATTGTACGACATTTCAACTAAACAAAATGTACAGTAAATAAAATAAAAAAAAGAGAAAAAACAAAGT------AAACAAACGACATCGAATGGCGTTAC-CCTTTGGAAAACTTGGCACATCGCAAAACAATAGTTCAAATAAGTTTTGAATGTTATAAATCATTATTATGCAG-------C-------ATCAATTATAATACCTACCTTTCCCCGATATATAATGCGATCTAGATAAAGTAAGACATTGAAAATACTGCGTCTAAAATCATCAACAGCCGTATCCAAGATGGCGGAAATCTTTGCATGGAAAACGCGCGAGTTTTACGTATTTAAATGACATGACGTCATGCC-CTTCCATCAAT-AAA-T-TTT-CGCCCTGGACATTCCGATTTTTAACAGTGAGGCCTAATTTTCGTGTTTGACATTCTTATGCTTTGAAAAAGCAATGAAAAAAATAAAACACATTTAAAAAACAGCACCAGTGACAAATAGAAATATTGCACTTCAGGTATTACATATTTCTGAACTTCACTTCCGTTAATATACACGAGGGAGGCACATAATCCACGGTTCACCAATCACTCT-T-TATCTCTA------CTGAACAAAACAACCGGGCCAAATTCGAAAATAGATATAGAGCTTCA----TATGATAATAAAG-TAATGACTCCATATTCGAAGAAATATAAATAATGATAATTATTTTAT--------GATAACCGTACTGGGAATTAATAACGCTCTATAGAA
gi|14 : ACATGCGCAGTCGCAAACCAAGAATTATGTA--AACAATTGTGACCTTGA-CAT----TAACCCCAAGTGTACAGCGCATGAGGGCGCATAATAAATGGACGACAT
gi|7 : GTCGAAAACTAAGAATTACATATAAACAATTGTGACCTTGAC------------------ATACAGCGCAAGACGGCGCATGATACATGGATGACATCAAGCAATGGATTCAGATAGGAAAGAATGCAAGAAAGAACCAATGC-ACAAAACACTCATGCACATTATAATTCCCGTTA--AAAAATC--A-------CAACAAAATAATCCTTTCACGCAACGC-ATAAAAAATAAAAATCACCATTCCAATCAGCCGAAAGA----ACATTCATTGTTTACATAAAAGTTAA-TAAATTGAACTA------CAATT--G--------------------CATAATAGAATATTTACTTACTGCATTG-ACGACATTTTTACTAAACAAAATGTACAGTAGA
gi|15 : tgcagacAAACCAAGAATTATGTA--AACAATTGTGACCTTGA-CAT----TAACCCCATGTGTACAGCGCATAAGGGGGCATGATACATTAATGACATC
gi|2 : atatgcacTTGTGACCTTGAC-ATTAAC--A--CCATGTGTACAGCGCAAGTCGGCACATGATACATAGATGACATCAAACAACGGAATCAGATAGGAAAGAACATAAGAAAGAACCAATGC-ACAAAACACGCATGCACAGTATGATTCCCGTT---AAAAAATTAA-------CAACAAAATAATCTTTTCACGCAACACAACAAAAAT-GAAAATCACCATTCCAATCAGCCGATACA----ACATTCGTTGTTTACATAAAAGTTAAT-AAATTCAACCATTGGTCCAATTCAGCTCGTTGTGAACTACTATTGCATTATAAAATATTTACTTACAGCTTTGTACGACATTTCAACTACACAAAATATACAGTAGATAAAA-------AATAGAGAAAACAGAGT------AAAGAAACGACATCGAAAGGCGTTAC-CCTTTGGAAAACTTTGCACATCGCATAACAGTAGTTCAAATAAGTTTTGATTGTTATAGATCATTATTATGCAA-------C------------TTA--------AC---TCATCAATATAAAATGCGATCTAGATAAAGTAAAATAATAAAAATATCGCGTCCAAAATCAACAACAGCTGTATCCAAGATGTCGGAAATCTTTGCATGGAAAACGTGCGAATTTTACGTATGCAAATGACATGACGTCATGCC-CTTTCATCATT-AAATT-TTT-CGCCCTAGAAATTCGGA-TTTTAACAGTGAGTCCTAATTTTCGTGTTTGACATTCCTATTCTTTGAAAATGCAATGAAAAAAAT-AAACACATTTGAAAAACAACACCTGTGACAAATAGAAATATTGTACTTCAGGTATTACATATTTCTGAACTTCACTTCCGTTAATATACACGAGGGAGATACACAATCCACGGTTCACTAATCACTCT-T-TATCTCCA------CTGAACAAAATAACTGGGCCACATTCGAAATTAGATATAGAGCTTCA----TATGATAATAA---TAAT-------TATT--------------TTATGATAA----------------------CCGTACTATGAATTAATAACACCGTATAG
gi|4 : CGCAGGATACATGGGTGACATCGAGCTGTGAAATCAGATAGGAAAGAACGCAAGAAAGAACCAAAGT-ACAAATCACACATGCACAGTACGATTCCCGTTTTAAAAAAAT--AAAAACATCAACAGCATAATCTTTTCATG---CACAACAAAATT-GAAAAATACAATTCCAATCAGTCGATGCATGCGACATTCGTTG-TTACAT-AAAGTTAA-TGAATTTTACCAATAGTCTTGTTTGGCACATTGT-------------ACTATAAAATATTTACTTATTGCATTGTACGACATTTCACCTAAACAAAATGTACAGTAGATTAAACAAAAAAAAAAAGAAAAA-AAAGTAAATTGAAACAAACGACATCGCATAGTGTTACATTTTTGGAAAACTTGGCACATCGCAAAAAAGCAGGTCAGATAAGTTTTGTTTGTTATAAATCATTATTATGCAA-------CTAAGCGAATAAGTTATAAAACCTACCTTCTCTCc
gi|17 : AGATAGGAAAGAACGCAAGAAAGAACTAATGCAAAAAAACACACATGCACAGTATGATTACCGTT----AAAAAC--a
gi|3 : tA----ACATTCGTTATTTACATAAAAATTAAT-AAATTTAACCAATGGTCCGATTTAGCTCGTTGTGAACTACAATTGCATTATAAGATATTTACTTACTGCATTGTACGACATTTCAACTAAACAAAATGTACAGTAGAT-------AAAAAAGAGAGAAAACAAAGT------AAACAAACGACATCGAATGGCGTTAC-CCTTTGGAAAAAGTGGCACATCGCAAAACAATACTTCAAATAAGTTTTGATTGTTATAAATCATTATTATGCAACTTAACTC-------ATCAATAAAAATTCCTACCTTTCCTCGATATATATTGCGATCTAGATAAAGTAAAATATTCAAAATACCGCGTCCAAAACTATCAACAGCTGTATCCAAGATGGCGGAAATCTTTGCATGGAAAACGCGCTAATTTTACGTATGCAAATTACATGACGTCATGCC-CTTCCATCAAT-ACA-TCTTT-CGCCCTGGAAA-TCCGA-TTTTAACAGTGAGGCCTAATTTTCGTGTTTGACATTCCTTTGCTTTGAAAAAGCAATG-AAAAAATAAAACACATTTGAAAAACAACACCTGTGACAAATAGAAATATTGCACTTCAGGTATTACATATTTCTGGACTTCG---CCGTTAATATACACGAGGGAGGCACATAATCAATGGTTCACCAATCACTGT-T-TATCTCTA------CTGAACAAAATAACTT-----AATTCGAAAATAGATATAGAGCTTCA----TATGATAATATAG-TAATGACTCCATATTCGAAGAAATATAGAAACTGATAATTCTTTTAT--------GATAACCGTACTATGAATTAATAACTCTCTAAAGAaa
gi|6 : aaaAAGAGAGAAAACAAAGT------TAACAAACGACATCGAACGGCGCTAC-CATTTGCAAAACCTGGCACATCGCAAAACAATAGTTCAAATAAGTTTTGTTTGCTATAAATCATTATTATGCAA-------CTTAACTCATCAATAATAATACCTACCTTTCCTCGATATATAATGCGATCTAGATAAAGTAAAATATTCAAAATACCGCGTCCAAAACCATCAACAGCTGTATCCAAAATGGCGGAAATCTTTGCATGGAAAATGCGCGAATTTTACGTATGCAAATGACATGACGTCATGCC-TTTCAATCAATAAAA-T-TTT-CGCCCTGGAATTTCCGA-TTTTAACAATGAGGCATAATTTTTGTGTTTGACATTCCTATGCTTTGAAAAAGCAATGAAAACAAT
gi|5 : AAACGACATCTTATGGCGTT-T-ACTTTAGAAAACTTGGTACATCACAAAACAATAGTTCAGATAAGTTTTGATTGTTATAAATCATTGTTATGCAA-------CTTAGCTAACCAACGATAATACCTACCTTTCCTCGCAATGTAATACGACCTAGATAAAGTAA---ATTA-----------TCCAAAACCATAAACAGCTGAAACCAAGATAGCGGATATCT--AAAAAGAAAACGCGCAAATTTTACGTATGCAAACGACATGACGTCATGCC-CTTCCATCAAT-CAA-T-TTTTCACCCTGGAAATTCCAATTTT-AACAGTG-GGCCTCATTTTCATGTTTGACATTCCTATGCTTT-AAAAAGCAATGAATAAA-TAAATCACATTTGAAAAACAACACCTGTGACAAATAGAAATATTGCACTTGAGGTATTACATATTTCTGAACTTCACTTCCGTTAATATACACGAGGGAGGCACATAATCCACG
gi|8 : TGCAACCCAGATTAAGAAAAATATCCCAAATGCAACGTCCAAAACCATCAACTGCTGAAACCAAGATGGCGGAAATATTTGCATGAAAAACACGTGAATATTACGTATGCAAATGACATAACGTCATGCC-CTTCCATCAAT-AAA-T-TTT-CACCCTGGAAATTCCAA-ATTTAACAG--------------------TGACATTCCTATGCTGTGATAAATCAATG-AAACAATAACACCCATTTGAAAAACTATACCAGCGACAAATAGAAATATTGCATATGAGGAATTACATATTTTTAAACTACACTTCCGTTCATATACAtt
gi|6 : GCGAAAATTTTATTGATTGAAA-GGCATGACGTCATGTCATTTGCATACGT-AAA---ATT-CGC
gi|13 : aagagagaaaacaaagttaacaaacgacatcgaacggcgctaccatttgcaaaacctggcacatcgcaaaacaatagttcaaataagttttgtttgctataaatcattattatgcaacttaactcatcaataataatacctacctttcctcgatatataatgcgatctagataaagtaaaatattcaaaataccgcgtccaaaaccatcaacagctgtatccaaaatggcggaaatctttgcatggaaaatgcAATAATTTATATTTAAATTAGAATAACTGTTATAGTTAGAACTATGGCAACTGGGAAACTACATATATCTGAATGACAATTCCAGCCATATGCACGAGGGAAACACAAAACCTACGcctggaatttccgattttaacaatgaggcataatttttgtgtttgacattcctatgctttgaaaaagcaatgaaaacaat
gi|9 : TCTGAACTTCACTTCCGTTAATATACACGAGGGAGGCACATAATCCACGGTTCACCAATCACTCT-T-TATCTCTAGGCCTTCTGAACAAAAAAACTGGGCCAAATTCGAAG--AAATATAAA----TA-----ATGATAATct
gi|10 : TATACACGAGGGAGGCACCTAATCCACGCTTCACAAATCTCTCTATATATCACTA------CTCGACAAAATATCTAGGCCATCTTCAAATATATATATAGAGCTTTATAATTATGATAATAATGATAATGtcttttataatgactgaataactgtactatgaatgctcta
gi|11 : GAACAAAATATCTGTGCCAACTTCGAAAACAGATATAGAGCTTTA----TATGATAATATAG-TAATGATTCCATATTCGAAGAAATATAAGTAATGATAATTCTTTAAT--------GATAACCATACTATGAATTCATAACGCTCTATAGAActttaatgatacccatactatgaatttataccgctctata
gi|12 : GAAAACAAGTATAGAGCGTTA----TATGATTGTATAG-TATTCACTCCATGTTCGAAGAAATATAAATAATGATAATTTTTTAAT--------GATATCAATGCAATGAGTTAATAACGTTCTATATAA
gi|9 : tCCAAATTCGAAGAAATATAAATAATGATAATTCTTTTATAATGACTGAATAACTGTACTATGAAT-------GCTCTAa
gi|10 : tctgaacttcacttccgttaatatacacgagggaggcacataatccacggttcaccaatcactctttatctctaggccttctgaacaaaaaaactgggTTTAAT--------GATACCCATACTATGAATTTATACCGCTCTATA
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): TCTGTTTTGTAATTCAACTTTTATTTCATCATTGTATCAATATTATTACATAAAGGATACAAAACATGATAATTTTTTTAT
Unaligned ( gi|18 ): AAATGAAAGGAATGTGTGATATTCCTTAGTGGTAATGAATATTATT
Alignments
lowQualScore : 11 222222222 222 444444444444 1111 22 111 22222222222 222222 1 1 222222 1111111 111 11111
lowQualScore : 1 33 333333333 5 1 1 1 2 2 8 6 222 999999999999 3 4 1 1 7777 0 0 11 3 6 4 6 999999999999 999 0 8 66666666666 333333 6 888 2 7 7 3 11 3 2 1 6 3 6 6 3 5 2 0 8 8 333333 2 1 2222222 1 22 0 1 000 1 44444 1 1
lowQualScore : . .. ......... . . . . . . . . ... ............ . . . . .... . . .. . . . . ............ ... . . ........... ...... . ... . . . . .. . . . . . . . . . . . . . ...... . . ....... . .. . . ... . ..... . .
lowQualScore : 0 88 222222222 0 0 0 0 0 0 0 4 000 000000000000 2 2 2 2 0000 8 8 22 6 0 6 8 222222222222 888 8 0 55555555555 000000 7 777 2 0 5 5 66 5 5 0 7 3 7 7 2 5 5 7 0 0 000000 5 7 4444444 7 11 7 4 000 9 33333 6 6
consensus : NNNNACATGCGCAGTCGCAAACCAAGAATTACGTA--AACAATTGTGACCTTGACCATTA----ACCCCATGTGTACAGCGCAAGACGGCGCATGATACATGGATGACATCAAGCAATGGAATCAGATAGGAAAGAACGCAAGAAAGAACCAATGC-ACAAAACACNCATGCACAGTACGATTCCCGTT---AAAAAA-C--A-------CAACAAAATAATCCTTTCACGCAACGCAACAAAAATGAAAATCACCATTCCAATCAGCCGATACA----ACATTCGTTGTTTACATAAAAGTTAATTAAATTNAACCAATGGTCCGATTCAGCTCGTTGTGAACTAC-AATTGCATTATAAAATATTTACTTACTGCATTGTACGACATTTCAACTAAACAAAATGTACAGTAGA-TAA--AA----AAAAAGAGAGAAAACAAAGT------AAACAAACGACATCGAATGGCGTT-AC-CCTTTGGAAAACTTGGCACATCGCAAAACAATAGTTCAAATAAGTTTTGATTGTTATAAATCATTATTATGCAACTTAACTCATCAATNATAATACCTACCTTTCCTCGATATATAATGCGATCTAGATAAAGTAAAATATTCAAAATACCGCGTCCAAAACCATCAACAGCTGTATCCAAGATGGCGGAAATCTTTGCATGGAAAACGCGCGAATTTTACGTATGCAAATGACATGACGTCATGCCCTTCCATCAAT-AAA-T-TTTCGCCCTGGAAATTCCGATTTT-AACAGTGAGGCCTAATTTTCGTGTTTGACATTCCTATGCTTTGAAAAAGCAATGAAAAAAATAAAACACATTTGAAAAACAACACCTGTGACAAATAGAAATATTGCACTTNAGGTATTACATATTTCTGAACTTCACTTCCGTTAATATACACGAGGGAGGCACATAATCCACGGTTCACCAATCACTCT-T-TATCTCTA------CTGAACAAAATAACTGGGCCAAATTCGAAAATAGATATAGAGCTTCATATGATAA----T-ATAGTAATGACTCCATATTCGAAGAAATATAAATAATGATAATTCTT---TAATG-----ATAACCGTACTATGAATTAATAACGCTCTATAGAA
Reference ( family-4267 ) : NNNNACATGCGCAGTCGNAAACCAAGAATTACGTA--AACAATTGTGACCTTGACCATTA----ACCCCATGTGTACAGCGCANGANGGCGCATGATACATGGATGACATCGAGCAACGGAATCAGATAGGAAAGAACGCAAGAAAGAACCAATGC-ACAAAACACGCATGCACAGTATGATTCCCGTT---AAAAAA-C--A-------CAACAAAATAATCTTTTCACGCAACGCAACAAAAATGAAAATCACCATTCCAATCAGCCGATACA----ACATTCGTTGTTTACATAAAAGTTAATTAAATTTAACCAATGGTCCGATTTAGCTCGTTGTGAACTAC-A-TTGCATTATAAAATATTTACTTACTGCATTGTACGACATTTCAACTAAACAAAATGTACAGTAGA-TAA--AA----AAAAAGAGAGAAAACAAAGT------AAACAAACGACATCGAATGGCGTT-AC-CCTTTGGAAAACTTGGCACATCGCAAAACAATAGTTCAAATAAGTTTTGATTGTTATAAATCATTATTATGCAACTTAGCTAATCAATNATAATACCTACCTTTCCTCGATATATAATGCGATCTAGATAAAGTAAAATATTCAAAATACCGCGTCCAAAACCATCAACAGCTGTATCCAAGATGGCGGAAATCTTTGCATGGAAAACGCGCGAATTTTACGTATGCAAATGACATGACGTCATGCCCTTCCATCAAT-AAA-T-TTTCGCCCTGGAAATTCCGATTTT-AACAGTGAGGCCTAATTTTCGTGTTTGACATTCCTATGCTTTGAAAAAGCAATGAAAAAAATAAAACACATTTGAAAAACAACACCTGTGACAAATAGAAATATTGCACTTGAGGTATTACATATTTCTGAACTTCACTTCCGTTAATATACACGAGGGAGGCACATAATCCACGGTTCACCAATCACTCT-T-TATCTCTA------CTGAACAAAATAACTGGGCCAAATTCGAAAATAGATATAGAGCTTTATATGATAA----T-ATAGTAATGACTCCATATTCGAAGAAATATAAATAATGATAATTCTT---TAATG-----ATAACCGTACTATGAATTAATAACGCTCTATAGAA
gi|1 : ACATGCGCAGTCGTAAACCAAGTATTACATA--AGCAATTGTGACCTTGACCATTGTGTGACC--ATGTGTACAGGGCAAGATGGCGCACGATACATGGATGACATCAAGCAATGGAAACAGATAGGAAAGAACGCAAGAAAGAACCAATGC-ACAAAACACTAATGCACAGTACGATTCCCGTTC--AAAAAA-C--G-------CAACAAAGTAATCCTTTCACGCAACACAACAAAAAAGAAAACCACCAGTCCAGTCAGCTGATTCA----ACATTCGATGTTTACATAAAAGTTAATTAAATTGAACCAATGGTCCAATTCAGCTCGTTGTGAACTAC-AATTCCATTATAAAATATTTACTTACTGCATTGTACGACATTTCAACTAAACAAAATGTACAGTAAA-TAA--AATAAAAAAAAGAGAAAAAACAAAGT------AAACAAACGACATCGAATGGCGTT-AC-CCTTTGGAAAACTTGGCACATCGCAAAACAATAGTTCAAATAAGTTTTGAATGTTATAAATCATTATTATGCAGC-------ATCAATTATAATACCTACCTTTCCCCGATATATAATGCGATCTAGATAAAGTAAGACATTGAAAATACTGCGTCTAAAATCATCAACAGCCGTATCCAAGATGGCGGAAATCTTTGCATGGAAAACGCGCGAGTTTTACGTATTTAAATGACATGACGTCATGCCCTTCCATCAAT-AAA-T-TTTCGCCCTGGACATTCCGATTTTTAACAGTGAGGCCTAATTTTCGTGTTTGACATTCTTATGCTTTGAAAAAGCAATGAAAAAAATAAAACACATTTAAAAAACAGCACCAGTGACAAATAGAAATATTGCACTTCAGGTATTACATATTTCTGAACTTCACTTCCGTTAATATACACGAGGGAGGCACATAATCCACGGTTCACCAATCACTCT-T-TATCTCTA------CTGAACAAAACAACCGGGCCAAATTCGAAAATAGATATAGAGCTTCATATGATAA----T-AAAGTAATGACTCCATATTCGAAGAAATATAAATAATGATAATTATT---TTATG-----ATAACCGTACTGGGAATTAATAACGCTCTATAGAA
gi|10 : actaTATACACGAGGGAGGCACCTAATCCACGCTTCACAAATCTCTCTATATATCACTA------CTCGACAAAATATCTAGGCCATCTTCAAATATATATATAGAGCTTTATA--ATTA----TGATAATAATG-----------------------ATAATG------CTT---TAATG-----ATACCCATACTATGAATTTATACCGCTCTATA
gi|11 : GAACAAAATATCTGTGCCAACTTCGAAAACAGATATAGAGCTTTATATGATAA----T-ATAGTAATGATTCCATATTCGAAGAAATATAAGTAATGATAATTCTT---TAATG-----ATAACCATACTATGAATTCATAACGCTCTATAGAA
gi|12 : GAAAACAAGTATAGAGCGTTATATGATTG----T-ATAGTATTCACTCCATGTTCGAAGAAATATAAATAATGATAATTTTT---TAATG-----ATATCAATGCAATGAGTTAATAACGTTCTATATAA
gi|13 : tAATAATTTATATTTAAATTAGAATAACTGTTATAGTTAGAACTATGGCAACTGGGAAACTACATATATCTGAATGACAATTCCAGCCATATGCACGAGGGAAACACAAAACCTACGa
gi|14 : ACATGCGCAGTCGCAAACCAAGAATTATGTA--AACAATTGTGACCTTGA-CATTA----ACCCCAAGTGTACAGCGCATGAGGGCGCATAATAAATGGACGACATct
gi|15 : CACAAACCAAGAATTATGTA--AACAATTGTGACCTTGAC-ATTA----ACCCCATGTGTACAGCGCATAAGGGGGCATGATACATTAATGACATC
gi|17 : atatgAGATAGGAAAGAACGCAAGAAAGAACTAATGCAAAAAAACACACATGCACAGTATGATTACCGTT---AAAAA
gi|2 : tTTGTGACCTTGAC-ATTA----ACACCATGTGTACAGCGCAAGTCGGCACATGATACATAGATGACATCAAACAACGGAATCAGATAGGAAAGAACATAAGAAAGAACCAATGC-ACAAAACACGCATGCACAGTATGATTCCCGTT---AAAAAA-TTAA-------CAACAAAATAATCTTTTCACGCAACACAACAAAAATGAAAATCACCATTCCAATCAGCCGATACA----ACATTCGTTGTTTACATAAAAGTTAA-TAAATTCAACCATTGGTCCAATTCAGCTCGTTGTGAACTACTA-TTGCATTATAAAATATTTACTTACAGCTTTGTACGACATTTCAACTACACAAAATATACAGTAGA-T-----A----AAAAATAGAGAAAACAGAGT------AAAGAAACGACATCGAAAGGCGTT-AC-CCTTTGGAAAACTTTGCACATCGCATAACAGTAGTTCAAATAAGTTTTGATTGTTATAGATCATTATTATGCAACTTAACTCATCAAT-ATAA----------------------AATGCGATCTAGATAAAGTAAAATAATAAAAATATCGCGTCCAAAATCAACAACAGCTGTATCCAAGATGTCGGAAATCTTTGCATGGAAAACGTGCGAATTTTACGTATGCAAATGACATGACGTCATGCCCTTTCATCATT-AAATT-TTTCGCCCTAGAAATTCGGATTTT-AACAGTGAGTCCTAATTTTCGTGTTTGACATTCCTATTCTTTGAAAATGCAATGAAAAAAAT-AAACACATTTGAAAAACAACACCTGTGACAAATAGAAATATTGTACTTCAGGTATTACATATTTCTGAACTTCACTTCCGTTAATATACACGAGGGAGATACACAATCCACGGTTCACTAATCACTCT-T-TATCTCCA------CTGAACAAAATAACTGGGCCACATTCGAAATTAGATATAGAGCTTCATATGATA-------ATAATAAT-------TATT--------------TTATGATAA----------------------CCGTACTATGAATTAATAACACCGTATAGcaa
gi|3 : A----ACATTCGTTATTTACATAAAAATTAAT-AAATTTAACCAATGGTCCGATTTAGCTCGTTGTGAACTAC-AATTGCATTATAAGATATTTACTTACTGCATTGTACGACATTTCAACTAAACAAAATGTACAGTAGA-TAA--AA-------AAGAGAGAAAACAAAGT------AAACAAACGACATCGAATGGCGTT-AC-CCTTTGGAAAAAGTGGCACATCGCAAAACAATACTTCAAATAAGTTTTGATTGTTATAAATCATTATTATGCAACTTAACTCATCAATAAAAATTCCTACCTTTCCTCGATATATATTGCGATCTAGATAAAGTAAAATATTCAAAATACCGCGTCCAAAACTATCAACAGCTGTATCCAAGATGGCGGAAATCTTTGCATGGAAAACGCGCTAATTTTACGTATGCAAATTACATGACGTCATGCCCTTCCATCAAT-ACA-TCTTTCGCCCTGGAAA-TCCGATTTT-AACAGTGAGGCCTAATTTTCGTGTTTGACATTCCTTTGCTTTGAAAAAGCAATG-AAAAAATAAAACACATTTGAAAAACAACACCTGTGACAAATAGAAATATTGCACTTCAGGTATTACATATTTCTGGACTTCG---CCGTTAATATACACGAGGGAGGCACATAATCAATGGTTCACCAATCACTGT-T-TATCTCTA------CTGAACAAAATAACTT-----AATTCGAAAATAGATATAGAGCTTCATATGATAA----T-ATAGTAATGACTCCATATTCGAAGAAATATAGAAACTGATAATTCTT---TTATG-----ATAACCGTACTATGAATTAATAACTCTCTAAAGAc
gi|4 : aaaCGCAGGATACATGGGTGACATCGAGCTGTGAAATCAGATAGGAAAGAACGCAAGAAAGAACCAAAGT-ACAAATCACACATGCACAGTACGATTCCCGTTTTAAAAAAA-T--AAAAACATCAACAGCATAATCTTTTCATGCA---CAACAAAATTGAAAAATACAATTCCAATCAGTCGATGCATGCGACATTCGTTG-TTACAT-AAAGTTAA-TGAATTTTACCAATAGTCTTGTTTGGC------------AC-A-TTGTACTATAAAATATTTACTTATTGCATTGTACGACATTTCACCTAAACAAAATGTACAGTAGATTAAACAA----AAAAAAAAAGAAAAAAAAGTAAATTGAAACAAACGACATCGCATAGTGTT-ACATTTTTGGAAAACTTGGCACATCGCAAAAAAGCAGGTCAGATAAGTTTTGTTTGTTATAAATCATTATTATGCAACTAAGCGAATAAGTTATAAAACCTACCTTCTCTC
gi|5 : AAACGACATCTTATGGCGTTTAC---TTTAGAAAACTTGGTACATCACAAAACAATAGTTCAGATAAGTTTTGATTGTTATAAATCATTGTTATGCAACTTAGCTAACCAACGATAATACCTACCTTTCCTCGCAATGTAATACGACCTAGATAAAGTAAATTA--------------TCCAAAACCATAAACAGCTGAAACCAAGATAGCGGATATC--TAAAAAGAAAACGCGCAAATTTTACGTATGCAAACGACATGACGTCATGCCCTTCCATCAAT-CAATT-TTTCACCCTGGAAATTCCAATTTT-AACAGTG-GGCCTCATTTTCATGTTTGACATTCCTATGCTTT-AAAAAGCAATG-AATAAATAAATCACATTTGAAAAACAACACCTGTGACAAATAGAAATATTGCACTTGAGGTATTACATATTTCTGAACTTCACTTCCGTTAATATACACGAGGGAGGCACATAATCCACGa
gi|6 : AAGAGAGAAAACAAAGT------TAACAAACGACATCGAACGGCGCT-AC-CATTTGCAAAACCTGGCACATCGCAAAACAATAGTTCAAATAAGTTTTGTTTGCTATAAATCATTATTATGCAACTTAACTCATCAATAATAATACCTACCTTTCCTCGATATATAATGCGATCTAGATAAAGTAAAATATTCAAAATACCGCGTCCAAAACCATCAACAGCTGTATCCAAAATGGCGGAAATCTTTGCATGGAAAATGCGCGAATTTTACGTATGCAAATGACATGACGTCATGCCTTTCAATCAATAAAA-T-TTTCGCCCTGGAATTTCCGATTTT-AACAATGAGGCATAATTTTTGTGTTTGACATTCCTATGCTTTGAAAAAGCAATGAAAACAATtt
gi|7 : GTCGAAAACTAAGAATTACATATAAACAATTGTGACCTTGAC------------------ATACAGCGCAAGACGGCGCATGATACATGGATGACATCAAGCAATGGATTCAGATAGGAAAGAATGCAAGAAAGAACCAATGC-ACAAAACACTCATGCACATTATAATTCCCGTT---AAAAAATC--A-------CAACAAAATAATCCTTTCACGCAACGCATAAAAAATAAAAATCACCATTCCAATCAGCCGAAAGA----ACATTCATTGTTTACATAAAAGTTAA-TAAATTGAACTA------CAATT-----------------------GCATAATAGAATATTTACTTACTGCATTG-ACGACATTTTTACTAAACAAAATGTACAGTAGA-
gi|8 : tgcagacTGCAACCCAGATTAAGAAAAATATCCCAAATGCAACGTCCAAAACCATCAACTGCTGAAACCAAGATGGCGGAAATATTTGCATGAAAAACACGTGAATATTACGTATGCAAATGACATAACGTCATGCCCTTCCATCAAT-AAA-T-TTTCACCCTGGAAATTCCAAATTT-AACAG--------------------TGACATTCCTATGCTGTGATAAATCAATG-AAACAATAACACCCATTTGAAAAACTATACCAGCGACAAATAGAAATATTGCATATGAGGAATTACATATTTTTAAACTACACTTCCGTTCATATACA
gi|9 : TCTGAACTTCACTTCCGTTAATATACACGAGGGAGGCACATAATCCACGGTTCACCAATCACTCT-T-TATCTCTAGGCCTTCTGAACAAAAAAACTGGGCCAAATTCGAAG--AAATATAAA----TA-ATGATAATTCTT-TTA-TAATGACT
gi|9 : CCAAATTCGAAGAAATATAAATAATGATAATTCTTTTATAATGACTGAATAACTGTACTATGAAT-------GCTCTAgaataactgtactatgaatgctcta
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TCTGTTTTGTAATTCAACTTTTATTTCATCATTGTATCAATATTATTACATAAAGGATACAAAACATGATAATTTTTTTAT
Unaligned ( gi|18 ): AAATGAAAGGAATGTGTGATATTCCTTAGTGGTAATGAATATTATT
Alignments
lowQualScore : 11 222222222 222 444444444444 1111 22 111111111 22222222222 222222 1 1 222222 1111111 111 11111
lowQualScore : 0 33 333333333 5 1 1 3 8 1 222 999999999999 3 4 1 1 7777 0 0 11 1 6 4 6 333333333 5 1 0 0 8 66666666666 333333 6 888 2 7 3 11 3 2 1 6 3 6 6 3 5 1 0 8 8 333333 2 1 4 2222222 1 22 0 1 000 1 44444 1 1
lowQualScore : . .. ......... . . . . . . ... ............ . . . . .... . . .. . . . . ......... . . . . . ........... ...... . ... . . . .. . . . . . . . . . . . . . ...... . . . ....... . .. . . ... . ..... . .
lowQualScore : 2 88 222222222 0 0 4 2 0 0 000 000000000000 2 2 2 2 0000 8 8 22 0 0 6 4 000000000 6 0 8 8 0 55555555555 000000 7 777 5 5 5 66 5 5 0 7 3 7 7 2 5 0 7 0 0 000000 5 7 0 4444444 7 11 7 4 000 9 33333 6 6
consensus : NNNNACATGCGCAGTCGCAAACCAAGAATTACGTA--AACAATTGTGACCTTGACCATTA----ACCCCATGTGTACAGCGCAAGACGGCGCATGATACATGGATGACATCAAGCAATGGAATCAGATAGGAAAGAACGCAAGAAAGAACCAATGC-ACAAAACACNCATGCACAGTACGATTCCCGTT---AAAAAA-C--A-------CAACAAAATAATCCTTTCACGCAACGCAACAAAAATGAAAATCACCATTCCAATCAGCCGATACA----ACATTCGTTGTTTACATAAAAGTTAATTAAATTNAACCAATGGTCCGATTCAGCTCGTTGTGAACTACAATTGCATTATAAAATATTTACTTACTGCATTGTACGACATTTCAACTAAACAAAATGTACAGTAGA-TAA--AA----AAAAAGAGAGAAAACAAAGT------AAACAAACGACATCGAATGGCGTT-AC-CCTTTGGAAAACTTGGCACATCGCAAAACAATAGTTCAAATAAGTTTTGATTGTTATAAATCATTATTATGCAACTTAACTCATCAATNATAATACCTACCTTTCCTCGATATATAATGCGATCTAGATAAAGTAAAATATTCAAAATACCGCGTCCAAAACCATCAACAGCTGTATCCAAGATGGCGGAAATCTTTGCATGGAAAACGCGCGAATTTTACGTATGCAAATGACATGACGTCATGCCCTTCCATCAAT-AAA-T-TTTCGCCCTGGAAATTCCGATTTT-AACAGTGAGGCCTAATTTTCGTGTTTGACATTCCTATGCTTTGAAAAAGCAATGAAAAAAATAAAACACATTTGAAAAACAACACCTGTGACAAATAGAAATATTGCACTTNAGGTATTACATATTTCTGAACTTCACTTCCGTTAATATACACGAGGGAGGCACATAATCCACGGTTCACCAATCACTCT-T-TATCTCTA------CTGAACAAAATAACTGGGCCAAATTCGAAAATAGATATAGAGCTTCATATGATAA----T-ATAGTAATGACTCCATATTCGAAGAAATATAAATAATGATAATTCTT---TAATG-----ATAACCGTACTATGAATTAATAACGCTCTATAGAA
Reference ( family-4267 ) : NNNNACATGCGCAGTCGCAAACCAAGAATTACGTA--AACAATTGTGACCTTGACCATTA----ACCCCATGTGTACAGCGCAAGACGGCGCATGATACATGGATGACATCAAGCAATGGAATCAGATAGGAAAGAACGCAAGAAAGAACCAATGC-ACAAAACACNCATGCACAGTACGATTCCCGTT---AAAAAA-C--A-------CAACAAAATAATCCTTTCACGCAACGCAACAAAAATGAAAATCACCATTCCAATCAGCCGATACA----ACATTCGTTGTTTACATAAAAGTTAATTAAATTNAACCAATGGTCCGATTCAGCTCGTTGTGAACTACAATTGCATTATAAAATATTTACTTACTGCATTGTACGACATTTCAACTAAACAAAATGTACAGTAGA-TAA--AA----AAAAAGAGAGAAAACAAAGT------AAACAAACGACATCGAATGGCGTT-AC-CCTTTGGAAAACTTGGCACATCGCAAAACAATAGTTCAAATAAGTTTTGATTGTTATAAATCATTATTATGCAACTTAACTCATCAATNATAATACCTACCTTTCCTCGATATATAATGCGATCTAGATAAAGTAAAATATTCAAAATACCGCGTCCAAAACCATCAACAGCTGTATCCAAGATGGCGGAAATCTTTGCATGGAAAACGCGCGAATTTTACGTATGCAAATGACATGACGTCATGCCCTTCCATCAAT-AAA-T-TTTCGCCCTGGAAATTCCGATTTT-AACAGTGAGGCCTAATTTTCGTGTTTGACATTCCTATGCTTTGAAAAAGCAATGAAAAAAATAAAACACATTTGAAAAACAACACCTGTGACAAATAGAAATATTGCACTTNAGGTATTACATATTTCTGAACTTCACTTCCGTTAATATACACGAGGGAGGCACATAATCCACGGTTCACCAATCACTCT-T-TATCTCTA------CTGAACAAAATAACTGGGCCAAATTCGAAAATAGATATAGAGCTTCATATGATAA----T-ATAGTAATGACTCCATATTCGAAGAAATATAAATAATGATAATTCTT---TAATG-----ATAACCGTACTATGAATTAATAACGCTCTATAGAA
gi|1 : ACATGCGCAGTCGTAAACCAAGTATTACATA--AGCAATTGTGACCTTGACCATTGTGTGACC--ATGTGTACAGGGCAAGATGGCGCACGATACATGGATGACATCAAGCAATGGAAACAGATAGGAAAGAACGCAAGAAAGAACCAATGC-ACAAAACACTAATGCACAGTACGATTCCCGTTC--AAAAAA-C--G-------CAACAAAGTAATCCTTTCACGCAACACAACAAAAAAGAAAACCACCAGTCCAGTCAGCTGATTCA----ACATTCGATGTTTACATAAAAGTTAATTAAATTGAACCAATGGTCCAATTCAGCTCGTTGTGAACTACAATTCCATTATAAAATATTTACTTACTGCATTGTACGACATTTCAACTAAACAAAATGTACAGTAAA-TAA--AATAAAAAAAAGAGAAAAAACAAAGT------AAACAAACGACATCGAATGGCGTT-AC-CCTTTGGAAAACTTGGCACATCGCAAAACAATAGTTCAAATAAGTTTTGAATGTTATAAATCATTATTATGCAGC-------ATCAATTATAATACCTACCTTTCCCCGATATATAATGCGATCTAGATAAAGTAAGACATTGAAAATACTGCGTCTAAAATCATCAACAGCCGTATCCAAGATGGCGGAAATCTTTGCATGGAAAACGCGCGAGTTTTACGTATTTAAATGACATGACGTCATGCCCTTCCATCAAT-AAA-T-TTTCGCCCTGGACATTCCGATTTTTAACAGTGAGGCCTAATTTTCGTGTTTGACATTCTTATGCTTTGAAAAAGCAATGAAAAAAATAAAACACATTTAAAAAACAGCACCAGTGACAAATAGAAATATTGCACTTCAGGTATTACATATTTCTGAACTTCACTTCCGTTAATATACACGAGGGAGGCACATAATCCACGGTTCACCAATCACTCT-T-TATCTCTA------CTGAACAAAACAACCGGGCCAAATTCGAAAATAGATATAGAGCTTCATATGATAA----T-AAAGTAATGACTCCATATTCGAAGAAATATAAATAATGATAATTATT---TTATG-----ATAACCGTACTGGGAATTAATAACGCTCTATAGAA
gi|10 : actaTATACACGAGGGAGGCACCTAATCCACGCTTCACAAATCTCTCTATATATCACTA------CTCGACAAAATATCTAGGCCATCTTCAAATATATATATAGAGCTT--TATAATTA----TGATAATAATG-----------------------ATAATG------CTT---TAATG-----ATACCCATACTATGAATTTATACCGCTCTATA
gi|11 : GAACAAAATATCTGTGCCAACTTCGAAAACAGATATAGAGCTTTATATGATAA----T-ATAGTAATGATTCCATATTCGAAGAAATATAAGTAATGATAATTCTT---TAATG-----ATAACCATACTATGAATTCATAACGCTCTATAGAA
gi|12 : GAAAACAAGTATAGAGCGTTATATGATTG----T-ATAGTATTCACTCCATGTTCGAAGAAATATAAATAATGATAATTTTT---TAATG-----ATATCAATGCAATGAGTTAATAACGTTCTATATAA
gi|13 : tAATAATTTATATTTAAATTAGAATAACTGTTATAGTTAGAACTATGGCAACTGGGAAACTACATATATCTGAATGACAATTCCAGCCATATGCACGAGGGAAACACAAAACCTACGa
gi|14 : ACATGCGCAGTCGCAAACCAAGAATTATGTA--AACAATTGTGACCTTGA-CATTA----ACCCCAAGTGTACAGCGCATGAGGGCGCATAATAAATGGACGACATct
gi|15 : CACAAACCAAGAATTATGTA--AACAATTGTGACCTTGAC-ATTA----ACCCCATGTGTACAGCGCATAAGGGGGCATGATACATTAATGACATC
gi|17 : atatgAGATAGGAAAGAACGCAAGAAAGAACTAATGCAAAAAAACACACATGCACAGTATGATTACCGTT---AAAAA
gi|2 : tTTGTGACCTTGAC-ATTA----ACACCATGTGTACAGCGCAAGTCGGCACATGATACATAGATGACATCAAACAACGGAATCAGATAGGAAAGAACATAAGAAAGAACCAATGC-ACAAAACACGCATGCACAGTATGATTCCCGTT---AAAAAA-TTAA-------CAACAAAATAATCTTTTCACGCAACACAACAAAAATGAAAATCACCATTCCAATCAGCCGATACA----ACATTCGTTGTTTACATAAAAGTTAA-TAAATTCAACCATTGGTCCAATTCAGCTCGTTGTGAACTACTATTGCATTATAAAATATTTACTTACAGCTTTGTACGACATTTCAACTACACAAAATATACAGTAGA-T-----A----AAAAATAGAGAAAACAGAGT------AAAGAAACGACATCGAAAGGCGTT-AC-CCTTTGGAAAACTTTGCACATCGCATAACAGTAGTTCAAATAAGTTTTGATTGTTATAGATCATTATTATGCAACTTAACTCATCAAT-ATAA----------------------AATGCGATCTAGATAAAGTAAAATAATAAAAATATCGCGTCCAAAATCAACAACAGCTGTATCCAAGATGTCGGAAATCTTTGCATGGAAAACGTGCGAATTTTACGTATGCAAATGACATGACGTCATGCCCTTTCATCATT-AAATT-TTTCGCCCTAGAAATTCGGATTTT-AACAGTGAGTCCTAATTTTCGTGTTTGACATTCCTATTCTTTGAAAATGCAATGAAAAAAAT-AAACACATTTGAAAAACAACACCTGTGACAAATAGAAATATTGTACTTCAGGTATTACATATTTCTGAACTTCACTTCCGTTAATATACACGAGGGAGATACACAATCCACGGTTCACTAATCACTCT-T-TATCTCCA------CTGAACAAAATAACTGGGCCACATTCGAAATTAGATATAGAGCTTCATATGATA-------ATAATAAT-------TATT--------------TTATGATAA----------------------CCGTACTATGAATTAATAACACCGTATAGcaa
gi|3 : A----ACATTCGTTATTTACATAAAAATTAAT-AAATTTAACCAATGGTCCGATTTAGCTCGTTGTGAACTACAATTGCATTATAAGATATTTACTTACTGCATTGTACGACATTTCAACTAAACAAAATGTACAGTAGA-TAA--AA-------AAGAGAGAAAACAAAGT------AAACAAACGACATCGAATGGCGTT-AC-CCTTTGGAAAAAGTGGCACATCGCAAAACAATACTTCAAATAAGTTTTGATTGTTATAAATCATTATTATGCAACTTAACTCATCAATAAAAATTCCTACCTTTCCTCGATATATATTGCGATCTAGATAAAGTAAAATATTCAAAATACCGCGTCCAAAACTATCAACAGCTGTATCCAAGATGGCGGAAATCTTTGCATGGAAAACGCGCTAATTTTACGTATGCAAATTACATGACGTCATGCCCTTCCATCAAT-ACA-TCTTTCGCCCTGGAAA-TCCGATTTT-AACAGTGAGGCCTAATTTTCGTGTTTGACATTCCTTTGCTTTGAAAAAGCAATG-AAAAAATAAAACACATTTGAAAAACAACACCTGTGACAAATAGAAATATTGCACTTCAGGTATTACATATTTCTGGACTTCG---CCGTTAATATACACGAGGGAGGCACATAATCAATGGTTCACCAATCACTGT-T-TATCTCTA------CTGAACAAAATAACTT-----AATTCGAAAATAGATATAGAGCTTCATATGATAA----T-ATAGTAATGACTCCATATTCGAAGAAATATAGAAACTGATAATTCTT---TTATG-----ATAACCGTACTATGAATTAATAACTCTCTAAAGAc
gi|4 : aaaCGCAGGATACATGGGTGACATCGAGCTGTGAAATCAGATAGGAAAGAACGCAAGAAAGAACCAAAGT-ACAAATCACACATGCACAGTACGATTCCCGTTTTAAAAAAA-T--AAAAACATCAACAGCATAATCTTTTCATGCA---CAACAAAATTGAAAAATACAATTCCAATCAGTCGATGCATGCGACATTCGTTG-TTACAT-AAAGTTAA-TGAATTTTACCAATAGTCTTGTTTGGC---------AC----ATTGTACTATAAAATATTTACTTATTGCATTGTACGACATTTCACCTAAACAAAATGTACAGTAGATTAAACAA----AAAAAAAAAGAAAAAAAAGTAAATTGAAACAAACGACATCGCATAGTGTT-ACATTTTTGGAAAACTTGGCACATCGCAAAAAAGCAGGTCAGATAAGTTTTGTTTGTTATAAATCATTATTATGCAACTAAGCGAATAAGTTATAAAACCTACCTTCTCTC
gi|5 : AAACGACATCTTATGGCGTTTAC---TTTAGAAAACTTGGTACATCACAAAACAATAGTTCAGATAAGTTTTGATTGTTATAAATCATTGTTATGCAACTTAGCTAACCAACGATAATACCTACCTTTCCTCGCAATGTAATACGACCTAGATAAAGTAAATTA--------------TCCAAAACCATAAACAGCTGAAACCAAGATAGCGGATATC--TAAAAAGAAAACGCGCAAATTTTACGTATGCAAACGACATGACGTCATGCCCTTCCATCAAT-CAATT-TTTCACCCTGGAAATTCCAATTTT-AACAGTG-GGCCTCATTTTCATGTTTGACATTCCTATGCTTT-AAAAAGCAATG-AATAAATAAATCACATTTGAAAAACAACACCTGTGACAAATAGAAATATTGCACTTGAGGTATTACATATTTCTGAACTTCACTTCCGTTAATATACACGAGGGAGGCACATAATCCACGa
gi|6 : AAGAGAGAAAACAAAGT------TAACAAACGACATCGAACGGCGCT-AC-CATTTGCAAAACCTGGCACATCGCAAAACAATAGTTCAAATAAGTTTTGTTTGCTATAAATCATTATTATGCAACTTAACTCATCAATAATAATACCTACCTTTCCTCGATATATAATGCGATCTAGATAAAGTAAAATATTCAAAATACCGCGTCCAAAACCATCAACAGCTGTATCCAAAATGGCGGAAATCTTTGCATGGAAAATGCGCGAATTTTACGTATGCAAATGACATGACGTCATGCCTTTCAATCAATAAAA-T-TTTCGCCCTGGAATTTCCGATTTT-AACAATGAGGCATAATTTTTGTGTTTGACATTCCTATGCTTTGAAAAAGCAATGAAAACAATtt
gi|7 : GTCGAAAACTAAGAATTACATATAAACAATTGTGACCTTGAC------------------ATACAGCGCAAGACGGCGCATGATACATGGATGACATCAAGCAATGGATTCAGATAGGAAAGAATGCAAGAAAGAACCAATGC-ACAAAACACTCATGCACATTATAATTCCCGTT---AAAAAATC--A-------CAACAAAATAATCCTTTCACGCAACGCATAAAAAATAAAAATCACCATTCCAATCAGCCGAAAGA----ACATTCATTGTTTACATAAAAGTTAA-TAAATTGAACTA------CAATT--GC------------ATAAT--------AGAATATTTACTTACTGCATTG-ACGACATTTTTACTAAACAAAATGTACAGTAGA-
gi|8 : tgcagacTGCAACCCAGATTAAGAAAAATATCCCAAATGCAACGTCCAAAACCATCAACTGCTGAAACCAAGATGGCGGAAATATTTGCATGAAAAACACGTGAATATTACGTATGCAAATGACATAACGTCATGCCCTTCCATCAAT-AAA-T-TTTCACCCTGGAAATTCCAAATTT-AACAG--------------------TGACATTCCTATGCTGTGATAAATCAATG-AAACAATAACACCCATTTGAAAAACTATACCAGCGACAAATAGAAATATTGCATATGAGGAATTACATATTTTTAAACTACACTTCCGTTCATATACA
gi|9 : TCTGAACTTCACTTCCGTTAATATACACGAGGGAGGCACATAATCCACGGTTCACCAATCACTCT-T-TATCTCTAGGCCTTCTGAACAAAAAAACTGGGCCAAATTCGAAG--AAATATAAA----TA-ATGATAATTCTT-TTA-TAATGACT
gi|9 : CCAAATTCGAAGAAATATAAATAATGATAATTCTTTTATAATGACTGAATAACTGTACTATGAAT-------GCTCTAgaataactgtactatgaatgctcta
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TCTGTTTTGTAATTCAACTTTTATTTCATCATTGTATCAATATTATTACATAAAGGATACAAAACATGATAATTTTTTTAT
Unaligned ( gi|18 ): AAATGAAAGGAATGTGTGATATTCCTTAGTGGTAATGAATATTATT
Alignments
lowQualScore : 11 222222222 222 444444444444 1111 22 111111111 22222222222 222222 1 1 222222 1111111 111 11111
lowQualScore : 0 33 333333333 5 1 1 3 8 1 222 999999999999 3 4 1 1 7777 0 0 11 1 6 4 6 333333333 5 1 0 0 8 66666666666 333333 6 888 2 7 3 11 3 2 1 6 3 6 6 3 5 1 0 8 8 333333 2 1 4 2222222 1 22 0 1 000 1 44444 1 1
lowQualScore : . .. ......... . . . . . . ... ............ . . . . .... . . .. . . . . ......... . . . . . ........... ...... . ... . . . .. . . . . . . . . . . . . . ...... . . . ....... . .. . . ... . ..... . .
lowQualScore : 2 88 222222222 0 0 4 2 0 0 000 000000000000 2 2 2 2 0000 8 8 22 0 0 6 4 000000000 6 0 8 8 0 55555555555 000000 7 777 5 5 5 66 5 5 0 7 3 7 7 2 5 0 7 0 0 000000 5 7 0 4444444 7 11 7 4 000 9 33333 6 6
consensus : NNNNACATGCGCAGTCGCAAACCAAGAATTACGTA--AACAATTGTGACCTTGACCATTA----ACCCCATGTGTACAGCGCAAGACGGCGCATGATACATGGATGACATCAAGCAATGGAATCAGATAGGAAAGAACGCAAGAAAGAACCAATGC-ACAAAACACNCATGCACAGTACGATTCCCGTT---AAAAAA-C--A-------CAACAAAATAATCCTTTCACGCAACGCAACAAAAATGAAAATCACCATTCCAATCAGCCGATACA----ACATTCGTTGTTTACATAAAAGTTAATTAAATTNAACCAATGGTCCGATTCAGCTCGTTGTGAACTACAATTGCATTATAAAATATTTACTTACTGCATTGTACGACATTTCAACTAAACAAAATGTACAGTAGA-TAA--AA----AAAAAGAGAGAAAACAAAGT------AAACAAACGACATCGAATGGCGTT-AC-CCTTTGGAAAACTTGGCACATCGCAAAACAATAGTTCAAATAAGTTTTGATTGTTATAAATCATTATTATGCAACTTAACTCATCAATNATAATACCTACCTTTCCTCGATATATAATGCGATCTAGATAAAGTAAAATATTCAAAATACCGCGTCCAAAACCATCAACAGCTGTATCCAAGATGGCGGAAATCTTTGCATGGAAAACGCGCGAATTTTACGTATGCAAATGACATGACGTCATGCCCTTCCATCAAT-AAA-T-TTTCGCCCTGGAAATTCCGATTTT-AACAGTGAGGCCTAATTTTCGTGTTTGACATTCCTATGCTTTGAAAAAGCAATGAAAAAAATAAAACACATTTGAAAAACAACACCTGTGACAAATAGAAATATTGCACTTNAGGTATTACATATTTCTGAACTTCACTTCCGTTAATATACACGAGGGAGGCACATAATCCACGGTTCACCAATCACTCT-T-TATCTCTA------CTGAACAAAATAACTGGGCCAAATTCGAAAATAGATATAGAGCTTCATATGATAA----T-ATAGTAATGACTCCATATTCGAAGAAATATAAATAATGATAATTCTT---TAATG-----ATAACCGTACTATGAATTAATAACGCTCTATAGAA
Reference ( family-4267 ) : NNNNACATGCGCAGTCGCAAACCAAGAATTACGTA--AACAATTGTGACCTTGACCATTA----ACCCCATGTGTACAGCGCAAGACGGCGCATGATACATGGATGACATCAAGCAATGGAATCAGATAGGAAAGAACGCAAGAAAGAACCAATGC-ACAAAACACNCATGCACAGTACGATTCCCGTT---AAAAAA-C--A-------CAACAAAATAATCCTTTCACGCAACGCAACAAAAATGAAAATCACCATTCCAATCAGCCGATACA----ACATTCGTTGTTTACATAAAAGTTAATTAAATTNAACCAATGGTCCGATTCAGCTCGTTGTGAACTACAATTGCATTATAAAATATTTACTTACTGCATTGTACGACATTTCAACTAAACAAAATGTACAGTAGA-TAA--AA----AAAAAGAGAGAAAACAAAGT------AAACAAACGACATCGAATGGCGTT-AC-CCTTTGGAAAACTTGGCACATCGCAAAACAATAGTTCAAATAAGTTTTGATTGTTATAAATCATTATTATGCAACTTAACTCATCAATNATAATACCTACCTTTCCTCGATATATAATGCGATCTAGATAAAGTAAAATATTCAAAATACCGCGTCCAAAACCATCAACAGCTGTATCCAAGATGGCGGAAATCTTTGCATGGAAAACGCGCGAATTTTACGTATGCAAATGACATGACGTCATGCCCTTCCATCAAT-AAA-T-TTTCGCCCTGGAAATTCCGATTTT-AACAGTGAGGCCTAATTTTCGTGTTTGACATTCCTATGCTTTGAAAAAGCAATGAAAAAAATAAAACACATTTGAAAAACAACACCTGTGACAAATAGAAATATTGCACTTNAGGTATTACATATTTCTGAACTTCACTTCCGTTAATATACACGAGGGAGGCACATAATCCACGGTTCACCAATCACTCT-T-TATCTCTA------CTGAACAAAATAACTGGGCCAAATTCGAAAATAGATATAGAGCTTCATATGATAA----T-ATAGTAATGACTCCATATTCGAAGAAATATAAATAATGATAATTCTT---TAATG-----ATAACCGTACTATGAATTAATAACGCTCTATAGAA
gi|1 : ACATGCGCAGTCGTAAACCAAGTATTACATA--AGCAATTGTGACCTTGACCATTGTGTGACC--ATGTGTACAGGGCAAGATGGCGCACGATACATGGATGACATCAAGCAATGGAAACAGATAGGAAAGAACGCAAGAAAGAACCAATGC-ACAAAACACTAATGCACAGTACGATTCCCGTTC--AAAAAA-C--G-------CAACAAAGTAATCCTTTCACGCAACACAACAAAAAAGAAAACCACCAGTCCAGTCAGCTGATTCA----ACATTCGATGTTTACATAAAAGTTAATTAAATTGAACCAATGGTCCAATTCAGCTCGTTGTGAACTACAATTCCATTATAAAATATTTACTTACTGCATTGTACGACATTTCAACTAAACAAAATGTACAGTAAA-TAA--AATAAAAAAAAGAGAAAAAACAAAGT------AAACAAACGACATCGAATGGCGTT-AC-CCTTTGGAAAACTTGGCACATCGCAAAACAATAGTTCAAATAAGTTTTGAATGTTATAAATCATTATTATGCAGC-------ATCAATTATAATACCTACCTTTCCCCGATATATAATGCGATCTAGATAAAGTAAGACATTGAAAATACTGCGTCTAAAATCATCAACAGCCGTATCCAAGATGGCGGAAATCTTTGCATGGAAAACGCGCGAGTTTTACGTATTTAAATGACATGACGTCATGCCCTTCCATCAAT-AAA-T-TTTCGCCCTGGACATTCCGATTTTTAACAGTGAGGCCTAATTTTCGTGTTTGACATTCTTATGCTTTGAAAAAGCAATGAAAAAAATAAAACACATTTAAAAAACAGCACCAGTGACAAATAGAAATATTGCACTTCAGGTATTACATATTTCTGAACTTCACTTCCGTTAATATACACGAGGGAGGCACATAATCCACGGTTCACCAATCACTCT-T-TATCTCTA------CTGAACAAAACAACCGGGCCAAATTCGAAAATAGATATAGAGCTTCATATGATAA----T-AAAGTAATGACTCCATATTCGAAGAAATATAAATAATGATAATTATT---TTATG-----ATAACCGTACTGGGAATTAATAACGCTCTATAGAA
gi|10 : actaTATACACGAGGGAGGCACCTAATCCACGCTTCACAAATCTCTCTATATATCACTA------CTCGACAAAATATCTAGGCCATCTTCAAATATATATATAGAGCTT--TATAATTA----TGATAATAATG-----------------------ATAATG------CTT---TAATG-----ATACCCATACTATGAATTTATACCGCTCTATA
gi|11 : GAACAAAATATCTGTGCCAACTTCGAAAACAGATATAGAGCTTTATATGATAA----T-ATAGTAATGATTCCATATTCGAAGAAATATAAGTAATGATAATTCTT---TAATG-----ATAACCATACTATGAATTCATAACGCTCTATAGAA
gi|12 : GAAAACAAGTATAGAGCGTTATATGATTG----T-ATAGTATTCACTCCATGTTCGAAGAAATATAAATAATGATAATTTTT---TAATG-----ATATCAATGCAATGAGTTAATAACGTTCTATATAA
gi|13 : tAATAATTTATATTTAAATTAGAATAACTGTTATAGTTAGAACTATGGCAACTGGGAAACTACATATATCTGAATGACAATTCCAGCCATATGCACGAGGGAAACACAAAACCTACGa
gi|14 : ACATGCGCAGTCGCAAACCAAGAATTATGTA--AACAATTGTGACCTTGA-CATTA----ACCCCAAGTGTACAGCGCATGAGGGCGCATAATAAATGGACGACATct
gi|15 : CACAAACCAAGAATTATGTA--AACAATTGTGACCTTGAC-ATTA----ACCCCATGTGTACAGCGCATAAGGGGGCATGATACATTAATGACATC
gi|17 : atatgAGATAGGAAAGAACGCAAGAAAGAACTAATGCAAAAAAACACACATGCACAGTATGATTACCGTT---AAAAA
gi|2 : tTTGTGACCTTGAC-ATTA----ACACCATGTGTACAGCGCAAGTCGGCACATGATACATAGATGACATCAAACAACGGAATCAGATAGGAAAGAACATAAGAAAGAACCAATGC-ACAAAACACGCATGCACAGTATGATTCCCGTT---AAAAAA-TTAA-------CAACAAAATAATCTTTTCACGCAACACAACAAAAATGAAAATCACCATTCCAATCAGCCGATACA----ACATTCGTTGTTTACATAAAAGTTAA-TAAATTCAACCATTGGTCCAATTCAGCTCGTTGTGAACTACTATTGCATTATAAAATATTTACTTACAGCTTTGTACGACATTTCAACTACACAAAATATACAGTAGA-T-----A----AAAAATAGAGAAAACAGAGT------AAAGAAACGACATCGAAAGGCGTT-AC-CCTTTGGAAAACTTTGCACATCGCATAACAGTAGTTCAAATAAGTTTTGATTGTTATAGATCATTATTATGCAACTTAACTCATCAAT-ATAA----------------------AATGCGATCTAGATAAAGTAAAATAATAAAAATATCGCGTCCAAAATCAACAACAGCTGTATCCAAGATGTCGGAAATCTTTGCATGGAAAACGTGCGAATTTTACGTATGCAAATGACATGACGTCATGCCCTTTCATCATT-AAATT-TTTCGCCCTAGAAATTCGGATTTT-AACAGTGAGTCCTAATTTTCGTGTTTGACATTCCTATTCTTTGAAAATGCAATGAAAAAAAT-AAACACATTTGAAAAACAACACCTGTGACAAATAGAAATATTGTACTTCAGGTATTACATATTTCTGAACTTCACTTCCGTTAATATACACGAGGGAGATACACAATCCACGGTTCACTAATCACTCT-T-TATCTCCA------CTGAACAAAATAACTGGGCCACATTCGAAATTAGATATAGAGCTTCATATGATA-------ATAATAAT-------TATT--------------TTATGATAA----------------------CCGTACTATGAATTAATAACACCGTATAGcaa
gi|3 : A----ACATTCGTTATTTACATAAAAATTAAT-AAATTTAACCAATGGTCCGATTTAGCTCGTTGTGAACTACAATTGCATTATAAGATATTTACTTACTGCATTGTACGACATTTCAACTAAACAAAATGTACAGTAGA-TAA--AA-------AAGAGAGAAAACAAAGT------AAACAAACGACATCGAATGGCGTT-AC-CCTTTGGAAAAAGTGGCACATCGCAAAACAATACTTCAAATAAGTTTTGATTGTTATAAATCATTATTATGCAACTTAACTCATCAATAAAAATTCCTACCTTTCCTCGATATATATTGCGATCTAGATAAAGTAAAATATTCAAAATACCGCGTCCAAAACTATCAACAGCTGTATCCAAGATGGCGGAAATCTTTGCATGGAAAACGCGCTAATTTTACGTATGCAAATTACATGACGTCATGCCCTTCCATCAAT-ACA-TCTTTCGCCCTGGAAA-TCCGATTTT-AACAGTGAGGCCTAATTTTCGTGTTTGACATTCCTTTGCTTTGAAAAAGCAATG-AAAAAATAAAACACATTTGAAAAACAACACCTGTGACAAATAGAAATATTGCACTTCAGGTATTACATATTTCTGGACTTCG---CCGTTAATATACACGAGGGAGGCACATAATCAATGGTTCACCAATCACTGT-T-TATCTCTA------CTGAACAAAATAACTT-----AATTCGAAAATAGATATAGAGCTTCATATGATAA----T-ATAGTAATGACTCCATATTCGAAGAAATATAGAAACTGATAATTCTT---TTATG-----ATAACCGTACTATGAATTAATAACTCTCTAAAGAc
gi|4 : aaaCGCAGGATACATGGGTGACATCGAGCTGTGAAATCAGATAGGAAAGAACGCAAGAAAGAACCAAAGT-ACAAATCACACATGCACAGTACGATTCCCGTTTTAAAAAAA-T--AAAAACATCAACAGCATAATCTTTTCATGCA---CAACAAAATTGAAAAATACAATTCCAATCAGTCGATGCATGCGACATTCGTTG-TTACAT-AAAGTTAA-TGAATTTTACCAATAGTCTTGTTTGGC---------AC----ATTGTACTATAAAATATTTACTTATTGCATTGTACGACATTTCACCTAAACAAAATGTACAGTAGATTAAACAA----AAAAAAAAAGAAAAAAAAGTAAATTGAAACAAACGACATCGCATAGTGTT-ACATTTTTGGAAAACTTGGCACATCGCAAAAAAGCAGGTCAGATAAGTTTTGTTTGTTATAAATCATTATTATGCAACTAAGCGAATAAGTTATAAAACCTACCTTCTCTC
gi|5 : AAACGACATCTTATGGCGTTTAC---TTTAGAAAACTTGGTACATCACAAAACAATAGTTCAGATAAGTTTTGATTGTTATAAATCATTGTTATGCAACTTAGCTAACCAACGATAATACCTACCTTTCCTCGCAATGTAATACGACCTAGATAAAGTAAATTA--------------TCCAAAACCATAAACAGCTGAAACCAAGATAGCGGATATC--TAAAAAGAAAACGCGCAAATTTTACGTATGCAAACGACATGACGTCATGCCCTTCCATCAAT-CAATT-TTTCACCCTGGAAATTCCAATTTT-AACAGTG-GGCCTCATTTTCATGTTTGACATTCCTATGCTTT-AAAAAGCAATG-AATAAATAAATCACATTTGAAAAACAACACCTGTGACAAATAGAAATATTGCACTTGAGGTATTACATATTTCTGAACTTCACTTCCGTTAATATACACGAGGGAGGCACATAATCCACGa
gi|6 : AAGAGAGAAAACAAAGT------TAACAAACGACATCGAACGGCGCT-AC-CATTTGCAAAACCTGGCACATCGCAAAACAATAGTTCAAATAAGTTTTGTTTGCTATAAATCATTATTATGCAACTTAACTCATCAATAATAATACCTACCTTTCCTCGATATATAATGCGATCTAGATAAAGTAAAATATTCAAAATACCGCGTCCAAAACCATCAACAGCTGTATCCAAAATGGCGGAAATCTTTGCATGGAAAATGCGCGAATTTTACGTATGCAAATGACATGACGTCATGCCTTTCAATCAATAAAA-T-TTTCGCCCTGGAATTTCCGATTTT-AACAATGAGGCATAATTTTTGTGTTTGACATTCCTATGCTTTGAAAAAGCAATGAAAACAATtt
gi|7 : GTCGAAAACTAAGAATTACATATAAACAATTGTGACCTTGAC------------------ATACAGCGCAAGACGGCGCATGATACATGGATGACATCAAGCAATGGATTCAGATAGGAAAGAATGCAAGAAAGAACCAATGC-ACAAAACACTCATGCACATTATAATTCCCGTT---AAAAAATC--A-------CAACAAAATAATCCTTTCACGCAACGCATAAAAAATAAAAATCACCATTCCAATCAGCCGAAAGA----ACATTCATTGTTTACATAAAAGTTAA-TAAATTGAACTA------CAATT--GC------------ATAAT--------AGAATATTTACTTACTGCATTG-ACGACATTTTTACTAAACAAAATGTACAGTAGA-
gi|8 : tgcagacTGCAACCCAGATTAAGAAAAATATCCCAAATGCAACGTCCAAAACCATCAACTGCTGAAACCAAGATGGCGGAAATATTTGCATGAAAAACACGTGAATATTACGTATGCAAATGACATAACGTCATGCCCTTCCATCAAT-AAA-T-TTTCACCCTGGAAATTCCAAATTT-AACAG--------------------TGACATTCCTATGCTGTGATAAATCAATG-AAACAATAACACCCATTTGAAAAACTATACCAGCGACAAATAGAAATATTGCATATGAGGAATTACATATTTTTAAACTACACTTCCGTTCATATACA
gi|9 : TCTGAACTTCACTTCCGTTAATATACACGAGGGAGGCACATAATCCACGGTTCACCAATCACTCT-T-TATCTCTAGGCCTTCTGAACAAAAAAACTGGGCCAAATTCGAAG--AAATATAAA----TA-ATGATAATTCTT-TTA-TAATGACT
gi|9 : CCAAATTCGAAGAAATATAAATAATGATAATTCTTTTATAATGACTGAATAACTGTACTATGAAT-------GCTCTAgaataactgtactatgaatgctcta
blockSeqs : TA CATTA C A T G A A TTA TAAAAACAT A A T A TGCG T C T A C TCGTTGTGA T T T AAACAAA AAATTG T ATT C A T AT A A C A T C . A A G A A GGCCTT G A T ATTCTT A GA T TTA A ACTGA C T
blockSeqs : . ATTA C T T G . G . TTAA A G A G . T T A G T TCGTTGTGA T A . AAAA . . CC C T A CA T C C . T . . A A C . . . T A T ATG G CA T . A . A C
blockSeqs : . ATTA C T A C . A . TCA . . T A . T T A T T . . A . AA . . CC A G T AT T C C . . . . A . C . . . G A C AT G GA T . A . T A
blockSeqs : . . . A C . T . . T G . A . . . . . . . CA A A T . T C A . . . . . . G . . . G T C GT A GA T . T . A A
blockSeqs : . . C . . . . . . . . . . . G . A T AT G G . . A . A A
blockSeqs : . . . . . . . . . . .
blockSeqCons : ATTA***** *** T*
originalCons : NNNNACATGCGCAGTCGCAAACCAAGAATTACGTA--AACAATTGTGACCTTGACCATTA----ACCCCATGTGTACAGCGCAAGACGGCGCATGATACATGGATGACATCAAGCAATGGAATCAGATAGGAAAGAACGCAAGAAAGAACCAATGC-ACAAAACACNCATGCACAGTACGATTCCCGTT---AAAAAA-C--A-------CAACAAAATAATCCTTTCACGCAACGCAACAAAAATGAAAATCACCATTCCAATCAGCCGATACA----ACATTCGTTGTTTACATAAAAGTTAATTAAATTNAACCAATGGTCCGATTCAGCTCGTTGTGAACTACAATTGCATTATAAAATATTTACTTACTGCATTGTACGACATTTCAACTAAACAAAATGTACAGTAGA-TAA--AA----AAAAAGAGAGAAAACAAAGT------AAACAAACGACATCGAATGGCGTT-AC-CCTTTGGAAAACTTGGCACATCGCAAAACAATAGTTCAAATAAGTTTTGATTGTTATAAATCATTATTATGCAACTTAACTCATCAATNATAATACCTACCTTTCCTCGATATATAATGCGATCTAGATAAAGTAAAATATTCAAAATACCGCGTCCAAAACCATCAACAGCTGTATCCAAGATGGCGGAAATCTTTGCATGGAAAACGCGCGAATTTTACGTATGCAAATGACATGACGTCATGCCCTTCCATCAAT-AAA-T-TTTCGCCCTGGAAATTCCGATTTT-AACAGTGAGGCCTAATTTTCGTGTTTGACATTCCTATGCTTTGAAAAAGCAATGAAAAAAATAAAACACATTTGAAAAACAACACCTGTGACAAATAGAAATATTGCACTTNAGGTATTACATATTTCTGAACTTCACTTCCGTTAATATACACGAGGGAGGCACATAATCCACGGTTCACCAATCACTCT-T-TATCTCTA------CTGAACAAAATAACTGGGCCAAATTCGAAAATAGATATAGAGCTTCATATGATAA----T-ATAGTAATGACTCCATATTCGAAGAAATATAAATAATGATAATTCTT---TAATG-----ATAACCGTACTATGAATTAATAACGCTCTATAGAA
finalCons : NNNNACATGCGCAGTCGCAAACCAAGAATTACGTA--AACAATTGTGACCTTGACATTA-----ACCCCATGTGTACAGCGCAAGACGGCGCATGATACATGGATGACATCAAGCAATGGAATCAGATAGGAAAGAACGCAAGAAAGAACCAATGC-ACAAAACACNCATGCACAGTACGATTCCCGTT---AAAAAA-C--A-------CAACAAAATAATCCTTTCACGCAACGCAACAAAAATGAAAATCACCATTCCAATCAGCCGATACA----ACATTCGTTGTTTACATAAAAGTTAAT-AAATTNAACCAATGGTCCGATTCAGCTCGTTGTGAACTACAATTGCATTATAAAATATTTACTTACTGCATTGTACGACATTTCAACTAAACAAAATGTACAGTAGA-TAA--AA----AAAAAGAGAGAAAACAAAGT------AAACAAACGACATCGAATGGCGTT-AC-CCTTTGGAAAACTTGGCACATCGCAAAACAATAGTTCAAATAAGTTTTGATTGTTATAAATCATTATTATGCAACTTAACTCATCAATNATAATACCTACCTTTCCTCGATATATAATGCGATCTAGATAAAGTAAAATATTCAAAATACCGCGTCCAAAACCATCAACAGCTGTATCCAAGATGGCGGAAATCTTTGCATGGAAAACGCGCGAATTTTACGTATGCAAATGACATGACGTCATGCCCTTCCATCAAT-AAA-T-TTTCGCCCTGGAAATTCCGATTTT-AACAGTGAGGCCTAATTTTCGTGTTTGACATTCCTATGCTTTGAAAAAGCAATGAAAAAAATAAAACACATTTGAAAAACAACACCTGTGACAAATAGAAATATTGCACTTNAGGTATTACATATTTCTGAACTTCACTTCCGTTAATATACACGAGGGAGGCACATAATCCACGGTTCACCAATCACTCT-T-TATCTCTA------CTGAACAAAATAACTGGGCCAAATTCGAAAATAGATATAGAGCTTCATATGATAA----T-ATAGTAATGACTCCATATTCGAAGAAATATAAATAATGATAATTCTT---TAATG-----ATAACCGTACTATGAATTAATAACGCTCTATAGAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TCTGTTTTGTAATTCAACTTTTATTTCATCATTGTATCAATATTATTACATAAAGGATACAAAACATGATAATTTTTTTAT
Unaligned ( gi|18 ): AAATGAAAGGAATGTGTGATATTCCTTAGTGGTAATGAATATTATT
Alignments
lowQualScore : 11 1111 222 444444444444 1111 111111111 22222222222 222222 1 1 222222 1111111 111 11111
lowQualScore : 0 33 8 0 7777 5 1 1 3 8 1 222 999999999999 3 4 1 1 7777 0 0 8 1 6 4 6 333333333 5 1 0 0 8 66666666666 333333 6 888 2 7 3 11 3 2 1 6 3 6 6 3 5 1 0 8 8 333333 2 1 4 2222222 1 22 0 1 000 1 44444 1 1
lowQualScore : . .. . . .... . . . . . . ... ............ . . . . .... . . . . . . . ......... . . . . . ........... ...... . ... . . . .. . . . . . . . . . . . . . ...... . . . ....... . .. . . ... . ..... . .
lowQualScore : 2 88 0 8 0000 0 0 4 2 0 0 000 000000000000 2 2 2 2 0000 8 8 0 0 0 6 4 000000000 6 0 8 8 0 55555555555 000000 7 777 5 5 5 66 5 5 0 7 3 7 7 2 5 0 7 0 0 000000 5 7 0 4444444 7 11 7 4 000 9 33333 6 6
consensus : NNNNACATGCGCAGTCGCAAACCAAGAATTACGTA--AACAATTGTGACCTTGAC-ATTA----ACCCCATGTGTACAGCGCAAGACGGCGCATGATACATGGATGACATCAAGCAATGGAATCAGATAGGAAAGAACGCAAGAAAGAACCAATGC-ACAAAACACNCATGCACAGTACGATTCCCGTT---AAAAAA-C--A-------CAACAAAATAATCCTTTCACGCAACGCAACAAAAATGAAAATCACCATTCCAATCAGCCGATACA----ACATTCGTTGTTTACATAAAAGTTAAT-AAATTNAACCAATGGTCCGATTCAGCTCGTTGTGAACTACAATTGCATTATAAAATATTTACTTACTGCATTGTACGACATTTCAACTAAACAAAATGTACAGTAGA-TAA--AA----AAAAAGAGAGAAAACAAAGT------AAACAAACGACATCGAATGGCGTT-AC-CCTTTGGAAAACTTGGCACATCGCAAAACAATAGTTCAAATAAGTTTTGATTGTTATAAATCATTATTATGCAACTTAACTCATCAATNATAATACCTACCTTTCCTCGATATATAATGCGATCTAGATAAAGTAAAATATTCAAAATACCGCGTCCAAAACCATCAACAGCTGTATCCAAGATGGCGGAAATCTTTGCATGGAAAACGCGCGAATTTTACGTATGCAAATGACATGACGTCATGCCCTTCCATCAAT-AAA-T-TTTCGCCCTGGAAATTCCGATTTT-AACAGTGAGGCCTAATTTTCGTGTTTGACATTCCTATGCTTTGAAAAAGCAATGAAAAAAATAAAACACATTTGAAAAACAACACCTGTGACAAATAGAAATATTGCACTTNAGGTATTACATATTTCTGAACTTCACTTCCGTTAATATACACGAGGGAGGCACATAATCCACGGTTCACCAATCACTCT-T-TATCTCTA------CTGAACAAAATAACTGGGCCAAATTCGAAAATAGATATAGAGCTTCATATGATAA----T-ATAGTAATGACTCCATATTCGAAGAAATATAAATAATGATAATTCTT---TAATG-----ATAACCGTACTATGAATTAATAACGCTCTATAGAA
Reference ( family-4267 ) : NNNNACATGCGCAGTCGCAAACCAAGAATTACGTA--AACAATTGTGACCTTGAC-ATTA----ACCCCATGTGTACAGCGCAAGACGGCGCATGATACATGGATGACATCAAGCAATGGAATCAGATAGGAAAGAACGCAAGAAAGAACCAATGC-ACAAAACACNCATGCACAGTACGATTCCCGTT---AAAAAA-C--A-------CAACAAAATAATCCTTTCACGCAACGCAACAAAAATGAAAATCACCATTCCAATCAGCCGATACA----ACATTCGTTGTTTACATAAAAGTTAAT-AAATTNAACCAATGGTCCGATTCAGCTCGTTGTGAACTACAATTGCATTATAAAATATTTACTTACTGCATTGTACGACATTTCAACTAAACAAAATGTACAGTAGA-TAA--AA----AAAAAGAGAGAAAACAAAGT------AAACAAACGACATCGAATGGCGTT-AC-CCTTTGGAAAACTTGGCACATCGCAAAACAATAGTTCAAATAAGTTTTGATTGTTATAAATCATTATTATGCAACTTAACTCATCAATNATAATACCTACCTTTCCTCGATATATAATGCGATCTAGATAAAGTAAAATATTCAAAATACCGCGTCCAAAACCATCAACAGCTGTATCCAAGATGGCGGAAATCTTTGCATGGAAAACGCGCGAATTTTACGTATGCAAATGACATGACGTCATGCCCTTCCATCAAT-AAA-T-TTTCGCCCTGGAAATTCCGATTTT-AACAGTGAGGCCTAATTTTCGTGTTTGACATTCCTATGCTTTGAAAAAGCAATGAAAAAAATAAAACACATTTGAAAAACAACACCTGTGACAAATAGAAATATTGCACTTNAGGTATTACATATTTCTGAACTTCACTTCCGTTAATATACACGAGGGAGGCACATAATCCACGGTTCACCAATCACTCT-T-TATCTCTA------CTGAACAAAATAACTGGGCCAAATTCGAAAATAGATATAGAGCTTCATATGATAA----T-ATAGTAATGACTCCATATTCGAAGAAATATAAATAATGATAATTCTT---TAATG-----ATAACCGTACTATGAATTAATAACGCTCTATAGAA
gi|1 : ACATGCGCAGTCGTAAACCAAGTATTACATA--AGCAATTGTGACCTTGACCATTGTGTGACC--ATGTGTACAGGGCAAGATGGCGCACGATACATGGATGACATCAAGCAATGGAAACAGATAGGAAAGAACGCAAGAAAGAACCAATGC-ACAAAACACTAATGCACAGTACGATTCCCGTTC--AAAAAA-C--G-------CAACAAAGTAATCCTTTCACGCAACACAACAAAAAAGAAAACCACCAGTCCAGTCAGCTGATTCA----ACATTCGATGTTTACATAAAAGTTAATTAAATTGAACCAATGGTCCAATTCAGCTCGTTGTGAACTACAATTCCATTATAAAATATTTACTTACTGCATTGTACGACATTTCAACTAAACAAAATGTACAGTAAA-TAA--AATAAAAAAAAGAGAAAAAACAAAGT------AAACAAACGACATCGAATGGCGTT-AC-CCTTTGGAAAACTTGGCACATCGCAAAACAATAGTTCAAATAAGTTTTGAATGTTATAAATCATTATTATGCAGC-------ATCAATTATAATACCTACCTTTCCCCGATATATAATGCGATCTAGATAAAGTAAGACATTGAAAATACTGCGTCTAAAATCATCAACAGCCGTATCCAAGATGGCGGAAATCTTTGCATGGAAAACGCGCGAGTTTTACGTATTTAAATGACATGACGTCATGCCCTTCCATCAAT-AAA-T-TTTCGCCCTGGACATTCCGATTTTTAACAGTGAGGCCTAATTTTCGTGTTTGACATTCTTATGCTTTGAAAAAGCAATGAAAAAAATAAAACACATTTAAAAAACAGCACCAGTGACAAATAGAAATATTGCACTTCAGGTATTACATATTTCTGAACTTCACTTCCGTTAATATACACGAGGGAGGCACATAATCCACGGTTCACCAATCACTCT-T-TATCTCTA------CTGAACAAAACAACCGGGCCAAATTCGAAAATAGATATAGAGCTTCATATGATAA----T-AAAGTAATGACTCCATATTCGAAGAAATATAAATAATGATAATTATT---TTATG-----ATAACCGTACTGGGAATTAATAACGCTCTATAGAA
gi|10 : actaTATACACGAGGGAGGCACCTAATCCACGCTTCACAAATCTCTCTATATATCACTA------CTCGACAAAATATCTAGGCCATCTTCAAATATATATATAGAGCTT--TATAATTA----TGATAATAATG-----------------------ATAATG------CTT---TAATG-----ATACCCATACTATGAATTTATACCGCTCTATA
gi|11 : GAACAAAATATCTGTGCCAACTTCGAAAACAGATATAGAGCTTTATATGATAA----T-ATAGTAATGATTCCATATTCGAAGAAATATAAGTAATGATAATTCTT---TAATG-----ATAACCATACTATGAATTCATAACGCTCTATAGAA
gi|12 : GAAAACAAGTATAGAGCGTTATATGATTG----T-ATAGTATTCACTCCATGTTCGAAGAAATATAAATAATGATAATTTTT---TAATG-----ATATCAATGCAATGAGTTAATAACGTTCTATATAA
gi|13 : tAATAATTTATATTTAAATTAGAATAACTGTTATAGTTAGAACTATGGCAACTGGGAAACTACATATATCTGAATGACAATTCCAGCCATATGCACGAGGGAAACACAAAACCTACGa
gi|14 : ACATGCGCAGTCGCAAACCAAGAATTATGTA--AACAATTGTGACCTTGAC-ATTA----ACCCCAAGTGTACAGCGCATGAGGGCGCATAATAAATGGACGACATct
gi|15 : CACAAACCAAGAATTATGTA--AACAATTGTGACCTTGAC-ATTA----ACCCCATGTGTACAGCGCATAAGGGGGCATGATACATTAATGACATC
gi|17 : atatgAGATAGGAAAGAACGCAAGAAAGAACTAATGCAAAAAAACACACATGCACAGTATGATTACCGTT---AAAAA
gi|2 : tTTGTGACCTTGAC-ATTA----ACACCATGTGTACAGCGCAAGTCGGCACATGATACATAGATGACATCAAACAACGGAATCAGATAGGAAAGAACATAAGAAAGAACCAATGC-ACAAAACACGCATGCACAGTATGATTCCCGTT---AAAAAA-TTAA-------CAACAAAATAATCTTTTCACGCAACACAACAAAAATGAAAATCACCATTCCAATCAGCCGATACA----ACATTCGTTGTTTACATAAAAGTTAAT-AAATTCAACCATTGGTCCAATTCAGCTCGTTGTGAACTACTATTGCATTATAAAATATTTACTTACAGCTTTGTACGACATTTCAACTACACAAAATATACAGTAGA-T-----A----AAAAATAGAGAAAACAGAGT------AAAGAAACGACATCGAAAGGCGTT-AC-CCTTTGGAAAACTTTGCACATCGCATAACAGTAGTTCAAATAAGTTTTGATTGTTATAGATCATTATTATGCAACTTAACTCATCAAT-ATAA----------------------AATGCGATCTAGATAAAGTAAAATAATAAAAATATCGCGTCCAAAATCAACAACAGCTGTATCCAAGATGTCGGAAATCTTTGCATGGAAAACGTGCGAATTTTACGTATGCAAATGACATGACGTCATGCCCTTTCATCATT-AAATT-TTTCGCCCTAGAAATTCGGATTTT-AACAGTGAGTCCTAATTTTCGTGTTTGACATTCCTATTCTTTGAAAATGCAATGAAAAAAAT-AAACACATTTGAAAAACAACACCTGTGACAAATAGAAATATTGTACTTCAGGTATTACATATTTCTGAACTTCACTTCCGTTAATATACACGAGGGAGATACACAATCCACGGTTCACTAATCACTCT-T-TATCTCCA------CTGAACAAAATAACTGGGCCACATTCGAAATTAGATATAGAGCTTCATATGATA-------ATAATAAT-------TATT--------------TTATGATAA----------------------CCGTACTATGAATTAATAACACCGTATAGcaa
gi|3 : A----ACATTCGTTATTTACATAAAAATTAAT-AAATTTAACCAATGGTCCGATTTAGCTCGTTGTGAACTACAATTGCATTATAAGATATTTACTTACTGCATTGTACGACATTTCAACTAAACAAAATGTACAGTAGA-TAA--AA-------AAGAGAGAAAACAAAGT------AAACAAACGACATCGAATGGCGTT-AC-CCTTTGGAAAAAGTGGCACATCGCAAAACAATACTTCAAATAAGTTTTGATTGTTATAAATCATTATTATGCAACTTAACTCATCAATAAAAATTCCTACCTTTCCTCGATATATATTGCGATCTAGATAAAGTAAAATATTCAAAATACCGCGTCCAAAACTATCAACAGCTGTATCCAAGATGGCGGAAATCTTTGCATGGAAAACGCGCTAATTTTACGTATGCAAATTACATGACGTCATGCCCTTCCATCAAT-ACA-TCTTTCGCCCTGGAAA-TCCGATTTT-AACAGTGAGGCCTAATTTTCGTGTTTGACATTCCTTTGCTTTGAAAAAGCAATG-AAAAAATAAAACACATTTGAAAAACAACACCTGTGACAAATAGAAATATTGCACTTCAGGTATTACATATTTCTGGACTTCG---CCGTTAATATACACGAGGGAGGCACATAATCAATGGTTCACCAATCACTGT-T-TATCTCTA------CTGAACAAAATAACTT-----AATTCGAAAATAGATATAGAGCTTCATATGATAA----T-ATAGTAATGACTCCATATTCGAAGAAATATAGAAACTGATAATTCTT---TTATG-----ATAACCGTACTATGAATTAATAACTCTCTAAAGAc
gi|4 : aaaCGCAGGATACATGGGTGACATCGAGCTGTGAAATCAGATAGGAAAGAACGCAAGAAAGAACCAAAGT-ACAAATCACACATGCACAGTACGATTCCCGTTTTAAAAAAA-T--AAAAACATCAACAGCATAATCTTTTCATGCA---CAACAAAATTGAAAAATACAATTCCAATCAGTCGATGCATGCGACATTCGTTG-TTACAT-AAAGTTAAT-GAATTTTACCAATAGTCTTGTTTGGC---------AC----ATTGTACTATAAAATATTTACTTATTGCATTGTACGACATTTCACCTAAACAAAATGTACAGTAGATTAAACAA----AAAAAAAAAGAAAAAAAAGTAAATTGAAACAAACGACATCGCATAGTGTT-ACATTTTTGGAAAACTTGGCACATCGCAAAAAAGCAGGTCAGATAAGTTTTGTTTGTTATAAATCATTATTATGCAACTAAGCGAATAAGTTATAAAACCTACCTTCTCTC
gi|5 : AAACGACATCTTATGGCGTTTAC---TTTAGAAAACTTGGTACATCACAAAACAATAGTTCAGATAAGTTTTGATTGTTATAAATCATTGTTATGCAACTTAGCTAACCAACGATAATACCTACCTTTCCTCGCAATGTAATACGACCTAGATAAAGTAAATTA--------------TCCAAAACCATAAACAGCTGAAACCAAGATAGCGGATATC--TAAAAAGAAAACGCGCAAATTTTACGTATGCAAACGACATGACGTCATGCCCTTCCATCAAT-CAATT-TTTCACCCTGGAAATTCCAATTTT-AACAGTG-GGCCTCATTTTCATGTTTGACATTCCTATGCTTT-AAAAAGCAATG-AATAAATAAATCACATTTGAAAAACAACACCTGTGACAAATAGAAATATTGCACTTGAGGTATTACATATTTCTGAACTTCACTTCCGTTAATATACACGAGGGAGGCACATAATCCACGa
gi|6 : AAGAGAGAAAACAAAGT------TAACAAACGACATCGAACGGCGCT-AC-CATTTGCAAAACCTGGCACATCGCAAAACAATAGTTCAAATAAGTTTTGTTTGCTATAAATCATTATTATGCAACTTAACTCATCAATAATAATACCTACCTTTCCTCGATATATAATGCGATCTAGATAAAGTAAAATATTCAAAATACCGCGTCCAAAACCATCAACAGCTGTATCCAAAATGGCGGAAATCTTTGCATGGAAAATGCGCGAATTTTACGTATGCAAATGACATGACGTCATGCCTTTCAATCAATAAAA-T-TTTCGCCCTGGAATTTCCGATTTT-AACAATGAGGCATAATTTTTGTGTTTGACATTCCTATGCTTTGAAAAAGCAATGAAAACAATtt
gi|7 : GTCGAAAACTAAGAATTACATATAAACAATTGTGACCTTGAC-AT-----------------ACAGCGCAAGACGGCGCATGATACATGGATGACATCAAGCAATGGATTCAGATAGGAAAGAATGCAAGAAAGAACCAATGC-ACAAAACACTCATGCACATTATAATTCCCGTT---AAAAAATC--A-------CAACAAAATAATCCTTTCACGCAACGCATAAAAAATAAAAATCACCATTCCAATCAGCCGAAAGA----ACATTCATTGTTTACATAAAAGTTAAT-AAATTGAACTA------CAATT--GC------------ATAAT--------AGAATATTTACTTACTGCATTG-ACGACATTTTTACTAAACAAAATGTACAGTAGA-
gi|8 : tgcagacTGCAACCCAGATTAAGAAAAATATCCCAAATGCAACGTCCAAAACCATCAACTGCTGAAACCAAGATGGCGGAAATATTTGCATGAAAAACACGTGAATATTACGTATGCAAATGACATAACGTCATGCCCTTCCATCAAT-AAA-T-TTTCACCCTGGAAATTCCAAATTT-AACAG--------------------TGACATTCCTATGCTGTGATAAATCAATG-AAACAATAACACCCATTTGAAAAACTATACCAGCGACAAATAGAAATATTGCATATGAGGAATTACATATTTTTAAACTACACTTCCGTTCATATACA
gi|9 : TCTGAACTTCACTTCCGTTAATATACACGAGGGAGGCACATAATCCACGGTTCACCAATCACTCT-T-TATCTCTAGGCCTTCTGAACAAAAAAACTGGGCCAAATTCGAAG--AAATATAAA----TA-ATGATAATTCTT-TTA-TAATGACT
gi|9 : CCAAATTCGAAGAAATATAAATAATGATAATTCTTTTATAATGACTGAATAACTGTACTATGAAT-------GCTCTAgaataactgtactatgaatgctcta
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TCTGTTTTGTAATTCAACTTTTATTTCATCATTGTATCAATATTATTACATAAAGGATACAAAACATGATAATTTTTTTAT
Unaligned ( gi|18 ): AAATGAAAGGAATGTGTGATATTCCTTAGTGGTAATGAATATTATT