lowQualScore : 1 1 11 1 111 222222222 22222 222 333333
lowQualScore : 6 5 5 9 11 66 5 2 6 222 44 3 999 3 222222222 6 6 3 44 5 3 3 88888 5 44 4 6 3 666 3 4 888888 9 0 0 3 1 99 3
lowQualScore : . . . . .. .. . . . ... .. . ... . ......... . . . .. . . . ..... . .. . . . ... . . ...... . . . . . .. .
lowQualScore : 0 0 3 0 88 88 0 8 7 555 66 3 222 3 888888888 2 2 1 22 1 1 1 00000 4 22 3 7 3 555 6 0 333333 4 1 5 2 8 22 3
consensus : NNAAAATTTACAAA-TCAGTAAGGAGATTATATATAACAACGTATACAAT-AATACAGATA---CTTTATTTCC--G-TC---T-CA---T---AATATACAAACATACAATAAA-ATC--AATGTACATACGCAT-G-AATACAGTTAGTATAGTA--TGCCATTCATA-TT-A-A-A-CTAT-AAGAGA------ATTAAAATCGACTACCCTTAAATGTGCAAATAGTAAATATCATC--CTTCAATGGACATAAAAACAATG
Reference ( gi|5 ) : ATAGAATTTAGAAAATCAGTAAGAAGATTTTATATAACAATGTACACAAT-AATACAGATA---CTTTATTTCT--G-TC---T-CA---T---ACTATACAATCATACAATAGA-ATT--AGTGTACATACGCAT-G-AATACAGTTAGTATAGTA--TGCTATTCATA-TT-A-C-A-CTAT-AAGAGA------ATTAAGATCGACTACCCTTAAATGTGCAAATAGTAAATATCATC--CTTCAGTGGACATAAAAACAATG
gi|8 : AAAATTTACAAC-TCAGTAAGGAGATTATATATAACAACCTATACAAT-AATACAGATA---CTTTATTTCT--G-TC---T-CA---T---AATATACAATCATACAATAAA-ATT--AGTGTACATATGCAT-G-AATACAGTAAGTATAGTA--TGCTATTCATA-CT-AGA-A-CTAT-AAGATA------ATTAAAATCGACTACCCTTAAAT
gi|4 : TTTACAAAATCAGTAAGGAGATTATATATAACAACGTATACAAT-AATACAGATA---CTTTATTTCT--G-TC---T-CA---T---AATATACAATCGTACAATCAA-ATT--AGTGTACATACGCAT-G-AATACAGTTAGTATAGTA--TGCTCTTCATA-TTAA-A-A-CTATAAAAAGA------ATTAAAATCGACTACGCTTAAATATGCAAATAGTAAATATCATC--CTTCAATGGTCATAAAAATAATG
gi|3 : AACTCAGTAAGCAGATTAAATATTACAAAGTATATAATTAATACAGATA---CTGTATTTCC--G-TC---T-CA---T---AATATACAATCATACAATAAA-ATT--ATTGTAAATACGCAT-G-AATAC----AGTATAGTA--TGCTATTCTTA-TC-AGA-A-TTAT-AAGAGACTCCATATTAAAATCGACTATCCTAAAATGTGCAAATAGTAAAAAACATC--GTTCAATGGACGTAATAACAATGatttc
gi|2 : gtttacAGGTTTCATA---CAATGTT-----T-AATATCTATATT-CTTTATGTCC--G-TA---T-CAACAT---AATTTATAAACATACAATAAA-ATC--AATGTACATATGAAT-C-AATATA---AG-ATATTA--TGCCATT-ATATTT-G-A-A-TTAT-AAGAGA------CT-----CCATTTATCTTTAAAAGTACAAATAA-------CATC--CTTCAATGGACTTGAAAatttc
gi|9 : aattaatatagcagatattttaataattattaaaagtgtcaattaattTATACAAT-AATACAGATA---CTTTATTTCT--G-TC---T-CA-------------CAAT-ATACAATAAA-ATT--AGTGTACATATGCAT-G-AATACAGTTAGTATAGTA--TGCTATTCATA-TT-A-G-AACTAT-AAGAGA------ATTAAAATCGACTACCCTTAAATGTGCAAATAGTAAATATCATC--CTTCAATGGACATAAAAACAATtatctttctttacttacttcaaaacatatcacaaac
gi|1 : cc-AATATATATA---TTTTATTTCC--G-TCCTAT-CA---T---AATATACAAATATACAATAAA-ATC--ATTGTACATACACAT-G--ATATAA--AGTATATTA--AGCCATGC-TA-TT-AGC-A-TGAT-AAGA
gi|6 : atcaatcaatacattttcATATAGAAT---CTTTATTTCC--G-TC---T-CA---T---AATAAACAAACATAGAATAAA-AGC--AATGTACATACGCCT-GAAATAAAGT--GTAT--TA--TGCCATTCATA-TT-A-TAA-TTAT-AAGAGA------CTCAAtactccatatttaaaaacattttttttccatgtacaattatgttccttcatttgacgtaatttatttatgtcttttaaaacatatcacatacgttaatatgacaagttattgttattcatacataccatagtacatcacaacaaattgtattaaaagaagtagaaataaactcagatgtttgtaaactagcaccttataagcgctaataacaaattgtttaaaaaaa
gi|13 : ataatttcaataatggcgtctctattaattcaaatatggatggcatactatactatatccgtgtgtctATATAAATATTTCTTT-TTCCC--GCTCA--T-CA---T---TATATACAAACATACAATAAA-ATC--AATGAACATACCCAT-G-AATA---TTA-TACA-TAACTGC-ATTCATtaatagtataacatgtataattatgatccgtcaaagaac
gi|10 : TA---TTCTATTTTTATG-TC---T-CA---TTATAAGATACAGACATACAATACA-ATC--AATGCACATAAGCAC-G-AATA----TAGTAAATTA--TGCCATTCAAATTT-G-A-A-TTAT-AAGACACTCCATATTAA-AGCAATTATCCTTACAAGTACACATAGgatctaaccctcacctgaagatattcttatctgccatata
gi|7 : gttcTA---TTTTATTTCT--A-TC---T-CA---TCAAAATACACAAACATACAAT--A-ATTCCAATGTATATACGTAT-G-GATATATTTTGCA----A--TGC-ATT-GTA----G-A-A-TTAT-AGCAGACGTCATATTAAAATAAATAAACCTTA----TAC-------AAATACCGTT--CTTCAATGAACATGAcgtcctttaaaaatatatttatttat
gi|11 : ttTTTATTTCC--G-TC---TTCA---T---AATATACTAACATACAATAAA-ATC--AATGTACATACGCATGG-AATA-A---AATATATTA--TGCTATTCATA-AT-A-A-A-Ccgcacaactatttatttaaaacgtatcatatatttacataaactatgacaagttagtgataa
gi|12 : ttacaatgtagtcattaacataaacgtataatgaatttatttaATTTCT--G-TC---T-CA---T---AATATACAATCATACAATAGA-ATT--AGTGTACATACGCAC-G-AATACAGTTAGTATAGTA--TGCTATTCATA-TT-A-A-A-CTAT-AAGAGA------ATTAAGATCGACTACCCTTAAATGTGCAAATAGTAAATATCATCTACACAAGAGGACATgtttcgttagctaaatattgacaac
gi|6 : AATAAAGATT--C-TATATAGACACAC-G-GATA----TAGTATAGTA--TGCCATCCATA-TT-
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): TATTTTATTTTTAAATAAAAAGACATGATATACTTTTAAAAGAATTGATATAGATTATAATAGTTTAAAATACTTCATAAAGAATATAAGGGTAATTTTAATCTAAAAATAATC
Unaligned ( gi|15 ): ATAATATTGTATCATTCAAAAATTAAAAAAAATTATATATGTGTAGATGTTATGGTCTGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|16 ): AACTTATTTATATGTGTTAAAACATATCACATACATAAATATGACTAGTTATTAATACTGAGTATAATACATACAAGAGAAATGGCAACATAAT
Unaligned ( gi|17 ): AACCTAGACAATAATATTTACATGCTGTAATCAAACCGATAACAATAGTGAATATGTTGTTTAAGTTCTATAGTAGTCAATACGA
Alignments
lowQualScore : 22 2222 111 111 22222 1 44444444444
lowQualScore : 33 0 6 9999 000 44 3 888 3 555 000 4 33 1 2 2 22222 4 33 9 3 2 3 3 77777777777 3 2 3 1 999
lowQualScore : .. . . .... ... .. . ... . ... ... . .. . . . ..... . .. . . . . . ........... . . . . ...
lowQualScore : 00 2 0 4444 444 22 1 555 1 444 888 8 99 8 9 9 66666 3 99 2 1 3 1 3 55555555555 3 6 6 4 333
consensus : NNAGAATTTACAANATCAGTAAGGAGATTATATATAACAACGTATACAAT----AATACAGATA---CTTTATTTCC--G-TC---T-CA---T---AATATACAAACATACAATAAAA--TCAGTGTACATACGCAT-G-AATACAGTTAGTATAGTA--TGCCATTCATA-TT-A-A-ACTAT-AAGAGAC-CC---A---TTAA-AATCGACTACCCTTAA-ATGTGCAAATAGTAAATATCATCCTTCAATGGACGTAAAAACAATG
Reference ( family-4177 ) : NNAAAATTTACAAA-TCAGTAAGGAGATTATATATAACAACGTATACAAT----AATACAGATA---CTTTATTTCC--G-TC---T-CA---T---AATATACAAACATACAATAAAA--TCAATGTACATACGCAT-G-AATACAGTTAGTATAGTA--TGCCATTCATA-TT-A-A-ACTAT-AAGAGA-------A---TTAA-AATCGACTACCCTTAA-ATGTGCAAATAGTAAATATCATCCTTCAATGGACATAAAAACAATG
gi|1 : ATACATTTTC-AATATATATA---TTTTATTTCC--G-TCCTAT-CA---T---AATATACAAATATACAATAAAA--TCATTGTACATACACAT-G--ATATAA--AGTATATTA--AGCCATGC-TA-TT-A-GCATGAT-AAGATACTCC---ATATTTAA-AAAC-ATTTTTTTTCC-ATGTACAATT-----ATGT--TCCTTCATTTGACGTAA
gi|10 : atcaatcaTA---TTCTATTTTTATG-TC---T-CA---TTATAAGATACAGACATACAATACAA--TCAATGCACATAAGCAC-G-AATA----TAGTAAATTA--TGCCATTCAAATTT-G-A-ATTAT-AAGACACTCCAT-A---TTAA-AG-CAATTATCCTTAC-AAGTACACATAG-------CGTCCTTTAAtttatttatgtcttttaaaacatatcacatacgttaatatgacaagttattgttattcatacataccatagtacatcacaacaaattgtattaaaagaagtagaaataaactcagatgtttgtaaactagcaccttataagcgctaataacaaattgtttaaaaaaa
gi|11 : gttcATTA-ACATAA--ACGTATA--ATG---AATTTATTTA----TTTATTTCC--G-TC---TTCA---T---AATATACTAACATACAATAAAA--TCAATGTACATACGCATGG-AATA-A---AATATATTA--TGCTATTCATA-AT-A-A-ACaaatatatttatttat
gi|12 : ttacaatgtagtcATTTCT--G-TC---T-CA---T---AATATACAATCATACAATAGAA--TTAGTGTACATACGCAC-G-AATACAGTTAGTATAGTA--TGCTATTCATA-TT-A-A-ACTAT-AAGAGA-------A---TTAA-GATCGACTACCCTTAA-ATGTGCAAATAGTAAATATCATCgtttcgttagctaaatattgacaac
gi|13 : ATATAAATATTTCTTT-TTCCC--GCTCA--T-CA---T---TATATACAAACATACAATAAAA--TCAATGAACATACCCAT-G-AATA---TTA-TACA-TAACTG-CATTCATtacacaagaggacat
gi|2 : ATACAATGTTTAATATCTATATT-CTTTATGTCC--G-TA---T-CAACAT---AATTTATAAACATACAATAAAA--TCAATGTACATATGAAT-C-AATATA---AG-ATATTA--TGCCATT-ATATTT-G-A-ATTAT-AAGAGA-------C---T------CCATTTATCTTTAA-AAGTACAAATAA-------CATCCTTCAATGGACTTGAAAgatctaaccctcacctgaagatattcttatctgccatata
gi|3 : aattaatatagcagatattttaataattattaaaagtgtcaattaattaggtttcTTTACAAC-TCAGTAAGCAGATTAAATATTACAAAGTATATAATT---AATACAGATA---CTGTATTTCC--G-TC---T-CA---T---AATATACAATCATACAATAAAA--TTATTGTAAATACGCAT-G-AATAC----AGTATAGTA--TGCTATTCTTA-TC-AGA-ATTAT-AAGAGACTCCAT-A---TTAA-AATCGACTATCCTAAA-ATGTGCAAATAGTAAAAAACATCGTTCAATGGACGTAATAACAATGtatctttctttacttacttcaaaacatatcacaaac
gi|4 : gTTTACAAAATCAGTAAGGAGATTATATATAACAACGTATACAAT----AATACAGATA---CTTTATTTCT--G-TC---T-CA---T---AATATACAATCGTACAATCAAA--TTAGTGTACATACGCAT-G-AATACAGTTAGTATAGTA--TGCTCTTCATA-TTAA-A-ACTATAAAAAGA-------A---TTAA-AATCGACTACGCTTAA-ATATGCAAATAGTAAATATCATCCTTCAATGGTCATAAAAATAATGatttc
gi|5 : AGAATTTAGAAAATCAGTAAGAAGATTTTATATAACAATGTACACAAT----AATACAGATA---CTTTATTTCT--G-TC---T-CA---T---ACTATACAATCATACAATAGAA--TTAGTGTACATACGCAT-G-AATACAGTTAGTATAGTA--TGCTATTCATA-TT-A-C-ACTAT-AAGAGA-------A---TTAA-GATCGACTACCCTTAA-ATGTGCAAATAGTAAATATCATCCTTCAGTGGACATAAAAACAATGatttc
gi|6 : atAATAAAGATTC--TATATAGACACAC-G-GATA----TAGTATAGTA--TGCCATCCATATTT-G-A-ATTAA-TAGAGACGCCATTA---TTGA-AAT
gi|6 : ataATATAGAAT---CTTTATTTCC--G-TC---T-CA---T---AATAAACAAACATAGAATAAAA--GCAATGTACATACGCCT-GAAATAAAGT--GTAT--TA--TGCCATTCATA-TT-ATA-ATTAT-AAGAGA-------C---TCAATAATAG--TA----TAACATGT----ATAAT---TATGATCCGTCAAAGAACtccgtctcataataaacaaacatagaataaaagcaatgtacatacgcctgaaataaagtgtattatgccattcatattataattataagagactcaataatagtataacatgtataattatgatccgtcaaagaac
gi|7 : ataatttcaataatggcgtctctattaattcaaatatggatggcatactatactatatccgtgtgtctTA---TTTTATTTCT--A-TC---T-CA---TCAAAATACACAAACATACAATAATT--CCAATGTATATACGTAT-G-GATATATTTTGCA----A--TG-CATT-GTA----G-A-ATTAT-AGCAGACGTCAT-A---TTAA-AATAAATAAACCTTA-----TAC-------AAATACCGTTCTTCAATGAACATGA
gi|8 : ttAAAATTTACAAC-TCAGTAAGGAGATTATATATAACAACCTATACAAT----AATACAGATA---CTTTATTTCT--G-TC---T-CA---T---AATATACAATCATACAATAAAA--TTAGTGTACATATGCAT-G-AATACAGTAAGTATAGTA--TGCTATTCATA-CT-AGA-ACTAT-AAGATA-------A---TTAA-AATCGACTACCCTTAA-ATcgcacaactatttatttaaaacgtatcatatatttacataaactatgacaagttagtgataa
gi|9 : TATACAAT----AATACAGATA---CTTTATTTCT--G-TC---T-CA---C---AATATACAA--------TAAAA--TTAGTGTACATATGCAT-G-AATACAGTTAGTATAGTA--TGCTATTCATA-TT-AGA-ACTAT-AAGAGA-------A---TTAA-AATCGACTACCCTTAA-ATGTGCAAATAGTAAATATCATCCTTCAATGGACATAAAAACAAT
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TATTTTATTTTTAAATAAAAAGACATGATATACTTTTAAAAGAATTGATATAGATTATAATAGTTTAAAATACTTCATAAAGAATATAAGGGTAATTTTAATCTAAAAATAATC
Unaligned ( gi|15 ): ATAATATTGTATCATTCAAAAATTAAAAAAAATTATATATGTGTAGATGTTATGGTCTGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|16 ): AACTTATTTATATGTGTTAAAACATATCACATACATAAATATGACTAGTTATTAATACTGAGTATAATACATACAAGAGAAATGGCAACATAAT
Unaligned ( gi|17 ): AACCTAGACAATAATATTTACATGCTGTAATCAAACCGATAACAATAGTGAATATGTTGTTTAAGTTCTATAGTAGTCAATACGA
Alignments
lowQualScore : 11 2222 111 111 22222 1 444444444
lowQualScore : 66 0 6 9999 000 44 3 888 3 555 000 4 33 2 2 2 22222 4 33 9 3 2 3 3 222222222 555 3 555 0 0 7 0 2
lowQualScore : .. . . .... ... .. . ... . ... ... . .. . . . ..... . .. . . . . . ......... ... . ... . . . . .
lowQualScore : 55 2 0 4444 444 22 1 555 1 444 888 8 99 2 9 9 66666 3 99 2 1 3 1 3 888888888 888 3 888 7 7 2 9 7
consensus : NNAGAATTTACAANATCAGTAAGGAGATTATATATAACAACGTATACAAT----AATACAGATA---CTTTATTTCC--G-TC---T-CA---T---AATATACAAACATACAATAAAA--TCAGTGTACATACGCAT-G-AATACAGTTAGTATAGTA--TGCCATTCATA-TT-A-A-ACTAT-AAGAGAC--C-C---A---T-TA---AAATCGACTACCCTTAAATGTGCAAATAGTAAATATCATCCTTCAATGGACGTAAAAACAATG
Reference ( family-4177 ) : NNAGAATTTACAANATCAGTAAGGAGATTATATATAACAACGTATACAAT----AATACAGATA---CTTTATTTCC--G-TC---T-CA---T---AATATACAAACATACAATAAAA--TCAGTGTACATACGCAT-G-AATACAGTTAGTATAGTA--TGCCATTCATA-TT-A-A-ACTAT-AAGAGAC--C-C---A---T-TA---AAATCGACTACCCTTAAATGTGCAAATAGTAAATATCATCCTTCAATGGACGTAAAAACAATG
gi|1 : ATACATTTTC-AATATATATA---TTTTATTTCC--G-TCCTAT-CA---T---AATATACAAATATACAATAAAA--TCATTGTACATACACAT-G--ATATAA--AGTATATTA--AGCCATGC-TA-TT-A-GCATGAT-AAGATACT-C-C---ATATT-TA---AAAAC-ATTTTTTTTCCATGTACAATT-----ATGT--TCCTTCATTTGACGTAA
gi|10 : atcaatcaTA---TTCTATTTTTATG-TC---T-CA---TTATAAGATACAGACATACAATACAA--TCAATGCACATAAGCAC-G-AATA----TAGTAAATTA--TGCCATTCAAATTT-G-A-ATTAT-AAGACACT-C-C---A---TATT---AAAGCAATTATCCTTACAAGTACACATAG-------CGTCCTTTAAtttatttatgtcttttaaaacatatcacatacgttaatatgacaagttattgttattcatacataccatagtacatcacaacaaattgtattaaaagaagtagaaataaactcagatgtttgtaaactagcaccttataagcgctaataacaaattgtttaaaaaaa
gi|11 : gttcATTA-ACATAA--ACGTATA--ATG---AATTTATTTA----TTTATTTCC--G-TC---TTCA---T---AATATACTAACATACAATAAAA--TCAATGTACATACGCATGG-AATA-A---AATATATTA--TGCTATTCATA-AT-A-A-ACaaatatatttatttat
gi|12 : ttacaatgtagtcATTTCT--G-TC---T-CA---T---AATATACAATCATACAATAGAA--TTAGTGTACATACGCAC-G-AATACAGTTAGTATAGTA--TGCTATTCATA-TT-A-A-ACTAT-AAGAGA---------A---T-TA---AGATCGACTACCCTTAAATGTGCAAATAGTAAATATCATCgtttcgttagctaaatattgacaac
gi|13 : ATATAAATATTTCTTT-TTCCC--GCTCA--T-CA---T---TATATACAAACATACAATAAAA--TCAATGAACATACCCAT-G-AATA---TTA-TACA-TAACTG-CATTCATtacacaagaggacat
gi|2 : ATACAATGTTTAATATCTATATT-CTTTATGTCC--G-TA---T-CAACAT---AATTTATAAACATACAATAAAA--TCAATGTACATATGAAT-C-AATATA---AG-ATATTA--TGCCATT-ATATTT-G-A-ATTAT-AAGAGACT-C-C---A---T-T------------TATCTTTAAAAGTACAAATAA-------CATCCTTCAATGGACTTGAAAgatctaaccctcacctgaagatattcttatctgccatata
gi|3 : aattaatatagcagatattttaataattattaaaagtgtcaattaattaggtttcTTTACAAC-TCAGTAAGCAGATTAAATATTACAAAGTATATAATT---AATACAGATA---CTGTATTTCC--G-TC---T-CA---T---AATATACAATCATACAATAAAA--TTATTGTAAATACGCAT-G-AATAC----AGTATAGTA--TGCTATTCTTA-TC-AGA-ATTAT-AAGAGAC--T-CCATA---T-TA---AAATCGACTATCCTAAAATGTGCAAATAGTAAAAAACATCGTTCAATGGACGTAATAACAATGtatctttctttacttacttcaaaacatatcacaaac
gi|4 : gTTTACAAAATCAGTAAGGAGATTATATATAACAACGTATACAAT----AATACAGATA---CTTTATTTCT--G-TC---T-CA---T---AATATACAATCGTACAATCAAA--TTAGTGTACATACGCAT-G-AATACAGTTAGTATAGTA--TGCTCTTCATA-TTAA-A-ACTATAAAAAGA---------A---T-TA---AAATCGACTACGCTTAAATATGCAAATAGTAAATATCATCCTTCAATGGTCATAAAAATAATGatttc
gi|5 : AGAATTTAGAAAATCAGTAAGAAGATTTTATATAACAATGTACACAAT----AATACAGATA---CTTTATTTCT--G-TC---T-CA---T---ACTATACAATCATACAATAGAA--TTAGTGTACATACGCAT-G-AATACAGTTAGTATAGTA--TGCTATTCATA-TT-A-C-ACTAT-AAGAGA---------A---T-TA---AGATCGACTACCCTTAAATGTGCAAATAGTAAATATCATCCTTCAGTGGACATAAAAACAATGatttc
gi|6 : atAATAAAGATTC--TATATAGACACAC-G-GATA----TAGTATAGTA--TGCCATCCATATTT-G-A-ATTAA-TAGAGACG-C-C---A---T-TATTGAAAT
gi|6 : ataATATAGAAT---CTTTATTTCC--G-TC---T-CA---T---AATAAACAAACATAGAATAAAA--GCAATGTACATACGCCT-GAAATAAAGT--GTAT--TA--TGCCATTCATA-TT-ATA-ATTAT-AAGAGAC--T-C---A---A-TA---Atccgtctcataataaacaaacatagaataaaagcaatgtacatacgcctgaaataaagtgtattatgccattcatattataattataagagactcaataatagtataacatgtataattatgatccgtcaaagaac
gi|7 : ataatttcaataatggcgtctctattaattcaaatatggatggcatactatactatatccgtgtgtctTA---TTTTATTTCT--A-TC---T-CA---TCAAAATACACAAACATACAATAATT--CCAATGTATATACGTAT-G-GATATATTTTGCA----A--TG-CATT-GTA----G-A-ATTAT-AGCAGACGTCAT---A---T-TA---AAATAAATAAACCTTA----TAC-------AAATACCGTTCTTCAATGAACATGAtagtataacatgtataattatgatccgtcaaagaac
gi|8 : ttAAAATTTACAAC-TCAGTAAGGAGATTATATATAACAACCTATACAAT----AATACAGATA---CTTTATTTCT--G-TC---T-CA---T---AATATACAATCATACAATAAAA--TTAGTGTACATATGCAT-G-AATACAGTAAGTATAGTA--TGCTATTCATA-CT-AGA-ACTAT-AAGATA---------A---T-TA---AAATCGACTACCCTTAAATcgcacaactatttatttaaaacgtatcatatatttacataaactatgacaagttagtgataa
gi|9 : TATACAAT----AATACAGATA---CTTTATTTCT--G-TC---T-CA---C---AATATACAA--------TAAAA--TTAGTGTACATATGCAT-G-AATACAGTTAGTATAGTA--TGCTATTCATA-TT-AGA-ACTAT-AAGAGA---------A---T-TA---AAATCGACTACCCTTAAATGTGCAAATAGTAAATATCATCCTTCAATGGACATAAAAACAAT
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TATTTTATTTTTAAATAAAAAGACATGATATACTTTTAAAAGAATTGATATAGATTATAATAGTTTAAAATACTTCATAAAGAATATAAGGGTAATTTTAATCTAAAAATAATC
Unaligned ( gi|15 ): ATAATATTGTATCATTCAAAAATTAAAAAAAATTATATATGTGTAGATGTTATGGTCTGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|16 ): AACTTATTTATATGTGTTAAAACATATCACATACATAAATATGACTAGTTATTAATACTGAGTATAATACATACAAGAGAAATGGCAACATAAT
Unaligned ( gi|17 ): AACCTAGACAATAATATTTACATGCTGTAATCAAACCGATAACAATAGTGAATATGTTGTTTAAGTTCTATAGTAGTCAATACGA
Alignments
lowQualScore : 11 2222 111 111 22222 1 444444444
lowQualScore : 66 0 6 9999 000 44 3 888 3 555 000 4 33 2 2 2 22222 4 33 9 3 2 3 3 222222222 555 3 555 0 0 7 0 2
lowQualScore : .. . . .... ... .. . ... . ... ... . .. . . . ..... . .. . . . . . ......... ... . ... . . . . .
lowQualScore : 55 2 0 4444 444 22 1 555 1 444 888 8 99 2 9 9 66666 3 99 2 1 3 1 3 888888888 888 3 888 7 7 2 9 7
consensus : NNAGAATTTACAANATCAGTAAGGAGATTATATATAACAACGTATACAAT----AATACAGATA---CTTTATTTCC--G-TC---T-CA---T---AATATACAAACATACAATAAAA--TCAGTGTACATACGCAT-G-AATACAGTTAGTATAGTA--TGCCATTCATA-TT-A-A-ACTAT-AAGAGAC--C-C---A---T-TA---AAATCGACTACCCTTAAATGTGCAAATAGTAAATATCATCCTTCAATGGACGTAAAAACAATG
Reference ( family-4177 ) : NNAGAATTTACAANATCAGTAAGGAGATTATATATAACAACGTATACAAT----AATACAGATA---CTTTATTTCC--G-TC---T-CA---T---AATATACAAACATACAATAAAA--TCAGTGTACATACGCAT-G-AATACAGTTAGTATAGTA--TGCCATTCATA-TT-A-A-ACTAT-AAGAGAC--C-C---A---T-TA---AAATCGACTACCCTTAAATGTGCAAATAGTAAATATCATCCTTCAATGGACGTAAAAACAATG
gi|1 : ATACATTTTC-AATATATATA---TTTTATTTCC--G-TCCTAT-CA---T---AATATACAAATATACAATAAAA--TCATTGTACATACACAT-G--ATATAA--AGTATATTA--AGCCATGC-TA-TT-A-GCATGAT-AAGATACT-C-C---ATATT-TA---AAAAC-ATTTTTTTTCCATGTACAATT-----ATGT--TCCTTCATTTGACGTAA
gi|10 : atcaatcaTA---TTCTATTTTTATG-TC---T-CA---TTATAAGATACAGACATACAATACAA--TCAATGCACATAAGCAC-G-AATA----TAGTAAATTA--TGCCATTCAAATTT-G-A-ATTAT-AAGACACT-C-C---A---TATT---AAAGCAATTATCCTTACAAGTACACATAG-------CGTCCTTTAAtttatttatgtcttttaaaacatatcacatacgttaatatgacaagttattgttattcatacataccatagtacatcacaacaaattgtattaaaagaagtagaaataaactcagatgtttgtaaactagcaccttataagcgctaataacaaattgtttaaaaaaa
gi|11 : gttcATTA-ACATAA--ACGTATA--ATG---AATTTATTTA----TTTATTTCC--G-TC---TTCA---T---AATATACTAACATACAATAAAA--TCAATGTACATACGCATGG-AATA-A---AATATATTA--TGCTATTCATA-AT-A-A-ACaaatatatttatttat
gi|12 : ttacaatgtagtcATTTCT--G-TC---T-CA---T---AATATACAATCATACAATAGAA--TTAGTGTACATACGCAC-G-AATACAGTTAGTATAGTA--TGCTATTCATA-TT-A-A-ACTAT-AAGAGA---------A---T-TA---AGATCGACTACCCTTAAATGTGCAAATAGTAAATATCATCgtttcgttagctaaatattgacaac
gi|13 : ATATAAATATTTCTTT-TTCCC--GCTCA--T-CA---T---TATATACAAACATACAATAAAA--TCAATGAACATACCCAT-G-AATA---TTA-TACA-TAACTG-CATTCATtacacaagaggacat
gi|2 : ATACAATGTTTAATATCTATATT-CTTTATGTCC--G-TA---T-CAACAT---AATTTATAAACATACAATAAAA--TCAATGTACATATGAAT-C-AATATA---AG-ATATTA--TGCCATT-ATATTT-G-A-ATTAT-AAGAGACT-C-C---A---T-T------------TATCTTTAAAAGTACAAATAA-------CATCCTTCAATGGACTTGAAAgatctaaccctcacctgaagatattcttatctgccatata
gi|3 : aattaatatagcagatattttaataattattaaaagtgtcaattaattaggtttcTTTACAAC-TCAGTAAGCAGATTAAATATTACAAAGTATATAATT---AATACAGATA---CTGTATTTCC--G-TC---T-CA---T---AATATACAATCATACAATAAAA--TTATTGTAAATACGCAT-G-AATAC----AGTATAGTA--TGCTATTCTTA-TC-AGA-ATTAT-AAGAGAC--T-CCATA---T-TA---AAATCGACTATCCTAAAATGTGCAAATAGTAAAAAACATCGTTCAATGGACGTAATAACAATGtatctttctttacttacttcaaaacatatcacaaac
gi|4 : gTTTACAAAATCAGTAAGGAGATTATATATAACAACGTATACAAT----AATACAGATA---CTTTATTTCT--G-TC---T-CA---T---AATATACAATCGTACAATCAAA--TTAGTGTACATACGCAT-G-AATACAGTTAGTATAGTA--TGCTCTTCATA-TTAA-A-ACTATAAAAAGA---------A---T-TA---AAATCGACTACGCTTAAATATGCAAATAGTAAATATCATCCTTCAATGGTCATAAAAATAATGatttc
gi|5 : AGAATTTAGAAAATCAGTAAGAAGATTTTATATAACAATGTACACAAT----AATACAGATA---CTTTATTTCT--G-TC---T-CA---T---ACTATACAATCATACAATAGAA--TTAGTGTACATACGCAT-G-AATACAGTTAGTATAGTA--TGCTATTCATA-TT-A-C-ACTAT-AAGAGA---------A---T-TA---AGATCGACTACCCTTAAATGTGCAAATAGTAAATATCATCCTTCAGTGGACATAAAAACAATGatttc
gi|6 : atAATAAAGATTC--TATATAGACACAC-G-GATA----TAGTATAGTA--TGCCATCCATATTT-G-A-ATTAA-TAGAGACG-C-C---A---T-TATTGAAAT
gi|6 : ataATATAGAAT---CTTTATTTCC--G-TC---T-CA---T---AATAAACAAACATAGAATAAAA--GCAATGTACATACGCCT-GAAATAAAGT--GTAT--TA--TGCCATTCATA-TT-ATA-ATTAT-AAGAGAC--T-C---A---A-TA---Atccgtctcataataaacaaacatagaataaaagcaatgtacatacgcctgaaataaagtgtattatgccattcatattataattataagagactcaataatagtataacatgtataattatgatccgtcaaagaac
gi|7 : ataatttcaataatggcgtctctattaattcaaatatggatggcatactatactatatccgtgtgtctTA---TTTTATTTCT--A-TC---T-CA---TCAAAATACACAAACATACAATAATT--CCAATGTATATACGTAT-G-GATATATTTTGCA----A--TG-CATT-GTA----G-A-ATTAT-AGCAGACGTCAT---A---T-TA---AAATAAATAAACCTTA----TAC-------AAATACCGTTCTTCAATGAACATGAtagtataacatgtataattatgatccgtcaaagaac
gi|8 : ttAAAATTTACAAC-TCAGTAAGGAGATTATATATAACAACCTATACAAT----AATACAGATA---CTTTATTTCT--G-TC---T-CA---T---AATATACAATCATACAATAAAA--TTAGTGTACATATGCAT-G-AATACAGTAAGTATAGTA--TGCTATTCATA-CT-AGA-ACTAT-AAGATA---------A---T-TA---AAATCGACTACCCTTAAATcgcacaactatttatttaaaacgtatcatatatttacataaactatgacaagttagtgataa
gi|9 : TATACAAT----AATACAGATA---CTTTATTTCT--G-TC---T-CA---C---AATATACAA--------TAAAA--TTAGTGTACATATGCAT-G-AATACAGTTAGTATAGTA--TGCTATTCATA-TT-AGA-ACTAT-AAGAGA---------A---T-TA---AAATCGACTACCCTTAAATGTGCAAATAGTAAATATCATCCTTCAATGGACATAAAAACAAT
blockSeqs : AA A GTTT TTT AT C A T ACA TAT A AT A G A CAGTT T AC T A G . A CTCCAT . A TTG T T
blockSeqs : AA T G TT . . . . . CAA A . A . . CAGTT T . T . T . . CGTCAT . . . T G
blockSeqs : C T T . . . . . . . T . G . . CAGTT G . T . G . . CTCC . . . T A
blockSeqs : T . . . . . . . . A . A . . TATTT T . . . G . . CTCC . . . T A
blockSeqs : . . . . . . . . A . A . . CAGTA G . . . . . . CGCC . . . T A
blockSeqs : . . . . . . . . T . T . . CAGTT G . . . . . . CTC . . . . A
blockSeqs : . . . . . . . . T . G . . AAGT G . . . . . . . . . . .
blockSeqs : . . . . . . . T . G . . TT G . . . . . . . . . . .
blockSeqs : . . . . . . . A . A . . TA G . . . . . . . . . .
blockSeqs : . . . . . . . A . A . . T G . . . . . . . . . .
blockSeqs : . . . . . . . T . G . . A . . . . . . . . . . .
blockSeqs : . . . . . . . . G . . C . . . . . .
blockSeqs : . . . . T . .
blockSeqCons : **** *** CAGTT CTCC***** ***
originalCons : NNAGAATTTACAANATCAGTAAGGAGATTATATATAACAACGTATACAAT----AATACAGATA---CTTTATTTCC--G-TC---T-CA---T---AATATACAAACATACAATAAAA--TCAGTGTACATACGCAT-G-AATACAGTTAGTATAGTA--TGCCATTCATA-TT-A-A-ACTAT-AAGAGAC--C-C---A---T-TA---AAATCGACTACCCTTAAATGTGCAAATAGTAAATATCATCCTTCAATGGACGTAAAAACAATG
finalCons : NNAGAATTTACAANATCAGTAAGGAGATTATATATAACAACGTATACAAT----AATACAGATA---CTTTATTTCC--G-TC---T-CA---T---AATATACAAACATACAATAAAA--TCAGTGTACATACGCAT-G-AATACAGTTAGTATAGTA--TGCCATTCATA-TT-A-A-ACTAT-AAGAGACTCC-----A---T-TA---AAATCGACTACCCTTAAATGTGCAAATAGTAAATATCATCCTTCAATGGACGTAAAAACAATG
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TATTTTATTTTTAAATAAAAAGACATGATATACTTTTAAAAGAATTGATATAGATTATAATAGTTTAAAATACTTCATAAAGAATATAAGGGTAATTTTAATCTAAAAATAATC
Unaligned ( gi|15 ): ATAATATTGTATCATTCAAAAATTAAAAAAAATTATATATGTGTAGATGTTATGGTCTGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|16 ): AACTTATTTATATGTGTTAAAACATATCACATACATAAATATGACTAGTTATTAATACTGAGTATAATACATACAAGAGAAATGGCAACATAAT
Unaligned ( gi|17 ): AACCTAGACAATAATATTTACATGCTGTAATCAAACCGATAACAATAGTGAATATGTTGTTTAAGTTCTATAGTAGTCAATACGA
Alignments
lowQualScore : 11 2222 111 111 22222 1 22222222
lowQualScore : 66 0 6 9999 000 44 3 888 3 555 000 4 33 2 2 2 22222 4 33 9 3 2 3 3 99999999 555 3 555 2 3 1 999 2
lowQualScore : .. . . .... ... .. . ... . ... ... . .. . . . ..... . .. . . . . . ........ ... . ... . . . ... .
lowQualScore : 55 2 0 4444 444 22 1 555 1 444 888 8 99 2 9 9 66666 3 99 2 1 3 1 3 33333333 888 3 888 6 6 4 333 7
consensus : NNAGAATTTACAANATCAGTAAGGAGATTATATATAACAACGTATACAAT----AATACAGATA---CTTTATTTCC--G-TC---T-CA---T---AATATACAAACATACAATAAAA--TCAGTGTACATACGCAT-G-AATACAGTTAGTATAGTA--TGCCATTCATA-TT-A-A-ACTAT-AAGAGAC-TC-C--A---T-TA---AAATCGACTACCCTTAA-ATGTGCAAATAGTAAATATCATCCTTCAATGGACGTAAAAACAATG
Reference ( family-4177 ) : NNAGAATTTACAANATCAGTAAGGAGATTATATATAACAACGTATACAAT----AATACAGATA---CTTTATTTCC--G-TC---T-CA---T---AATATACAAACATACAATAAAA--TCAGTGTACATACGCAT-G-AATACAGTTAGTATAGTA--TGCCATTCATA-TT-A-A-ACTAT-AAGAGAC-TC-C--A---T-TA---AAATCGACTACCCTTAA-ATGTGCAAATAGTAAATATCATCCTTCAATGGACGTAAAAACAATG
gi|1 : ATACATTTTC-AATATATATA---TTTTATTTCC--G-TCCTAT-CA---T---AATATACAAATATACAATAAAA--TCATTGTACATACACAT-G--ATATAA--AGTATATTA--AGCCATGC-TA-TT-A-GCATGAT-AAGATAC-TC-C--ATATT-TA---AAAAC-ATTTTTTTTCC-ATGTACAATT-----ATGT--TCCTTCATTTGACGTAA
gi|10 : atcaatcaTA---TTCTATTTTTATG-TC---T-CA---TTATAAGATACAGACATACAATACAA--TCAATGCACATAAGCAC-G-AATA----TAGTAAATTA--TGCCATTCAAATTT-G-A-ATTAT-AAGACAC-TC-C--A---TATT---AAAGCAATTATCCTTAC-AAGTACACATAG-------CGTCCTTTAAtttatttatgtcttttaaaacatatcacatacgttaatatgacaagttattgttattcatacataccatagtacatcacaacaaattgtattaaaagaagtagaaataaactcagatgtttgtaaactagcaccttataagcgctaataacaaattgtttaaaaaaa
gi|11 : gttcATTA-ACATAA--ACGTATA--ATG---AATTTATTTA----TTTATTTCC--G-TC---TTCA---T---AATATACTAACATACAATAAAA--TCAATGTACATACGCATGG-AATA-A---AATATATTA--TGCTATTCATA-AT-A-A-ACaaatatatttatttat
gi|12 : ttacaatgtagtcATTTCT--G-TC---T-CA---T---AATATACAATCATACAATAGAA--TTAGTGTACATACGCAC-G-AATACAGTTAGTATAGTA--TGCTATTCATA-TT-A-A-ACTAT-AAGAGA--------A---T-TA---AGATCGACTACCCTTAA-ATGTGCAAATAGTAAATATCATCgtttcgttagctaaatattgacaac
gi|13 : ATATAAATATTTCTTT-TTCCC--GCTCA--T-CA---T---TATATACAAACATACAATAAAA--TCAATGAACATACCCAT-G-AATA---TTA-TACA-TAACTG-CATTCATtacacaagaggacat
gi|2 : ATACAATGTTTAATATCTATATT-CTTTATGTCC--G-TA---T-CAACAT---AATTTATAAACATACAATAAAA--TCAATGTACATATGAAT-C-AATATA---AG-ATATTA--TGCCATT-ATATTT-G-A-ATTAT-AAGAGAC-TC-C--A---T-T------------TATCTTTAA-AAGTACAAATAA-------CATCCTTCAATGGACTTGAAAgatctaaccctcacctgaagatattcttatctgccatata
gi|3 : aattaatatagcagatattttaataattattaaaagtgtcaattaattaggtttcTTTACAAC-TCAGTAAGCAGATTAAATATTACAAAGTATATAATT---AATACAGATA---CTGTATTTCC--G-TC---T-CA---T---AATATACAATCATACAATAAAA--TTATTGTAAATACGCAT-G-AATAC----AGTATAGTA--TGCTATTCTTA-TC-AGA-ATTAT-AAGAGAC-TC-CATA---T-TA---AAATCGACTATCCTAAA-ATGTGCAAATAGTAAAAAACATCGTTCAATGGACGTAATAACAATGtatctttctttacttacttcaaaacatatcacaaac
gi|4 : gTTTACAAAATCAGTAAGGAGATTATATATAACAACGTATACAAT----AATACAGATA---CTTTATTTCT--G-TC---T-CA---T---AATATACAATCGTACAATCAAA--TTAGTGTACATACGCAT-G-AATACAGTTAGTATAGTA--TGCTCTTCATA-TTAA-A-ACTATAAAAAGA--------A---T-TA---AAATCGACTACGCTTAA-ATATGCAAATAGTAAATATCATCCTTCAATGGTCATAAAAATAATGatttc
gi|5 : AGAATTTAGAAAATCAGTAAGAAGATTTTATATAACAATGTACACAAT----AATACAGATA---CTTTATTTCT--G-TC---T-CA---T---ACTATACAATCATACAATAGAA--TTAGTGTACATACGCAT-G-AATACAGTTAGTATAGTA--TGCTATTCATA-TT-A-C-ACTAT-AAGAGA--------A---T-TA---AGATCGACTACCCTTAA-ATGTGCAAATAGTAAATATCATCCTTCAGTGGACATAAAAACAATGatttc
gi|6 : atAATAAAGATTC--TATATAGACACAC-G-GATA----TAGTATAGTA--TGCCATCCATATTT-G-A-ATTAA-TAGAGAC-GC-C--A---T-TATTGAAAT
gi|6 : ataATATAGAAT---CTTTATTTCC--G-TC---T-CA---T---AATAAACAAACATAGAATAAAA--GCAATGTACATACGCCT-GAAATAAAGT--GTAT--TA--TGCCATTCATA-TT-ATA-ATTAT-AAGAGAC-TC-A--A---T-------AATAG--TA----TAACATGT----ATAAT---TATGATCCGTCAAAGAACtccgtctcataataaacaaacatagaataaaagcaatgtacatacgcctgaaataaagtgtattatgccattcatattataattataagagactcaataatagtataacatgtataattatgatccgtcaaagaac
gi|7 : ataatttcaataatggcgtctctattaattcaaatatggatggcatactatactatatccgtgtgtctTA---TTTTATTTCT--A-TC---T-CA---TCAAAATACACAAACATACAATAATT--CCAATGTATATACGTAT-G-GATATATTTTGCA----A--TG-CATT-GTA----G-A-ATTAT-AGCAGACGTCAT--A---T-TA---AAATAAATAAACCTTA-----TAC-------AAATACCGTTCTTCAATGAACATGA
gi|8 : ttAAAATTTACAAC-TCAGTAAGGAGATTATATATAACAACCTATACAAT----AATACAGATA---CTTTATTTCT--G-TC---T-CA---T---AATATACAATCATACAATAAAA--TTAGTGTACATATGCAT-G-AATACAGTAAGTATAGTA--TGCTATTCATA-CT-AGA-ACTAT-AAGATA--------A---T-TA---AAATCGACTACCCTTAA-ATcgcacaactatttatttaaaacgtatcatatatttacataaactatgacaagttagtgataa
gi|9 : TATACAAT----AATACAGATA---CTTTATTTCT--G-TC---T-CA---C---AATATACAA--------TAAAA--TTAGTGTACATATGCAT-G-AATACAGTTAGTATAGTA--TGCTATTCATA-TT-AGA-ACTAT-AAGAGA--------A---T-TA---AAATCGACTACCCTTAA-ATGTGCAAATAGTAAATATCATCCTTCAATGGACATAAAAACAAT
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TATTTTATTTTTAAATAAAAAGACATGATATACTTTTAAAAGAATTGATATAGATTATAATAGTTTAAAATACTTCATAAAGAATATAAGGGTAATTTTAATCTAAAAATAATC
Unaligned ( gi|15 ): ATAATATTGTATCATTCAAAAATTAAAAAAAATTATATATGTGTAGATGTTATGGTCTGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|16 ): AACTTATTTATATGTGTTAAAACATATCACATACATAAATATGACTAGTTATTAATACTGAGTATAATACATACAAGAGAAATGGCAACATAAT
Unaligned ( gi|17 ): AACCTAGACAATAATATTTACATGCTGTAATCAAACCGATAACAATAGTGAATATGTTGTTTAAGTTCTATAGTAGTCAATACGA