lowQualScore : 111111 222222222222222222222 22 111111111111 33333333333333333333 1111 3
lowQualScore : 3 666666 00 99 2 33 2 22 55555 6 2 2 333 33333 22 2 444 66 000000000000000000000 44 66 0 1 77 77 33 6666 2 5 2 66666 2 2 66 33 2 444444444444 00000000000000000000 2 33 33 6666 444 33 33 88888 5 2 2 33 5 5 2 1 2 6 2 33 777777 1
lowQualScore : . ...... .. .. . .. . .. ..... . . . ... ..... .. . ... .. ..................... .. .. . . .. .. .. .... . . . ..... . . .. .. . ............ .................... . .. .. .... ... .. .. ..... . . . .. . . . . . . . .. ...... .
lowQualScore : 6 444444 77 66 1 11 4 99 33333 0 0 0 777 77777 99 1 111 55 111111111111111111111 44 66 1 9 99 99 99 1111 7 8 5 22222 5 7 44 99 9 666666666666 77777777777777777777 9 99 99 8888 777 77 77 33333 3 5 4 22 1 6 2 9 4 5 4 22 222222 7
consensus : CACTCACGTATATTG--CGCATTCGTGTATATCGCGCATCCAT-GTTTTAAGACC--AA-GAACT--A-----AGAAAA-AA-A-TACAATTCTCCTATATATGTGTA---TATA---G--CGCATC-ATA---AGT--GACA-N----------T--------TTCG-CGGTAG-TGACAATTTTGAAGTTTCTCAAGAGAATGCCGTTAATTT--TTT--TAAT--CTAC----G-TTTTATACACACTCAAAATACTTGACACTTCNCATCACTGTCTCAATACATAC-----TC-AGAGTTGTCAACACCTGCCCAGGCGTGCAATTAAGATGTCAACTAATATG-CAGAAGCCACATGGCAGCACCCGCTTTCAATACTCCGAAATGACCGGTGACACTCGTACA--CA-G------------TC--G-------T---------T-TT--TTTTT--T----AAAAAT---CT--T--ACA-ATA-T-TTTT-TTTTA-AT--CATAACGAAATACCGCAT-ATTATATTGATTTTATTTTATAAACA-TAAACTAC-TACAAACC--GCACAAACAAAAGATACTGGG------TGTCGTTTAAAAATGATTGATTTTCAACCAAAGAACAGTCGTCTCTTTGACGTTCACTCCATCACGCTTCGTCATC
Reference ( gi|9 ) : CACTCACATATATTG--CGCATCTGTGTATATCATGCATCCAT-GTTTTAAGATC--AA-GAACT--A-----AGAAAA-AA-A-TACAATTCTCCTATATATGTGTA---TATA---G--CGCATC-ATA---AGT--GACA-C----------T--------TTCG-CGGTAA-TGACAATTTTGAAGTTTCTCAAGAGAATGCCGTTAATTT--TTT--TAAT--CTAC----G-TTTTATACACACTTAAAATACTTGACACTTCGCATCACTGTCTCAATACATAC-----TC-AGAGTTGTCAACACCTGCCCAGGCGTGCAATTAAGATGTCAACTAATATG-CAGAAGCCACATGGCAGCACCCGCTTTCAATACTCCGAAATGACCGGTGAT-CTCGTACA--CA-G------------TC--G-------T---------T-TT--TTTTT--T----AAAAAT---CT--T--ACA-ATA-T-TTTT-TTTTA-AT--CACAA-GAAATACCGCAT-ATTATATTGATTTTATTTTATAAACA-TAAATTAC-TACAAACC--GCACAAACAAAAGATACTGGG------TGTCGTTTAAAAATGATTGACTTTCAACCAAAGAACAGTCGTCTCTTTGACGTTCACTCCATCACGCTTCGTCATC
gi|10 : CACTCACGTATATTG--CACATCTGTGTATATCGCGCATCCAT-GTTTTAAGATC--AA-GAACT--A-----AGAAAA-AA-A-TACAATTCTCCTATATATGTGTA---TATA---G--CGCATC-ATA---AGT--GTCA-C----------T--------TTTG-CGATAG-TGACAATTTTGAAGTTTCTCAAGAGAATGCCGTTAATTT--T-T--TAAT--CTAC----G-TTTTATACACACTCAAAATACTTGACACTTCGCATCATTGTCTCAATACATAC-----TC-AGAGTGGTCAACACCTGCCCAGGCGTGCAATTAAGATGTCAACTAATATG-CAGAAGCCACATGGCAGCACCCACTTTCAATACTCCGAAATGATCGGTGAT-CTCGTACA--CA-G------------TC--G-------T---------T-GT--TTTTT--T----AAAAAT---CT--T--ACA-A-A-T-TTTT-TTTTT-AT--CATAACGAAATACCGCAT-ATTATATTGA-TTCATTTTATAAACA-TAAACTTC-TACAAACC--GCACAAACAAAAGATACTGGG------TGTCGTTTAAAAATGATTGACTTTCAACCAAAGAACAGTCGTCTCTTTGACGTTCACTCCATCACGCTTCGTCAT
gi|12 : ttCACTCACGTATATTG--CGCATCTGTGTATATCGCGCATCCAT-GTTTTAAGATC--AA-GAACT--G-----AGAAAA-AA-A-TACAATTCTCCTATATATGTGTA---TATA---G--CGCATC-ATA---AGT--GACA-A----------T--------TTCG-CGGTAG-TGACAATTTTG------------------CCGTTAATTT--TTT--TAAT--CTAC----G-TTTTATACACACTCAAAATACTTGACACTTCGCATCACTGTCTCAATACGTAC-----TC-AGAGTTGTCAACACCTGTCCATGCGTGCAATTAAGATGTCAACTAATATG-CAGAAGCCACATGGCAGCACCTGCTTTCAATACTCCGAAATGACCGGTGAT-TTCGTACA--CA-G------------TC--A-------T---------T-TT--TTTTT--TA---AAAAAT---CT--T--ACA-AAT-T-TTTT-TTTTA-AT--CATAACGAAATACCCCAT-ATTATATTGA-TTTATTTTATAAACA-TAAACTAC-TACAAACC--GCACAAACAAAAGATACTGGA------TGTCGTTTAAAAATGGTTGACTTTCAACCAAAGAACAGTTGTCTCTTTGACGTTCACTTCATCACGCTTCGTCATC
gi|13 : ttCACTCACCTATATTG--CGCATCTGTGTATATCGCGCATCCAT-GTTTTAAGATC--AA-GAACT--A-----AGAAAA-AA-A-TACAATTCTCCTATAAATGTGTA---TATA---G--CGCATC-ATA---AGT--GACA-C----------T--------TTCG-CGGTAG-TGACAATTTTGAAGTTTCTCAAAAGAATGCCGTTAATTT--TTT--TAAT--CTAC----G-TTTTATACACACTCAAAATACTTGACACTTCGCATCAC--TCTCAATACATAC-----AC-AGAGTTGTCAACACCTGCCCAGGCGTGCCAC----ATG-----------G-CAG--------------CACCCGCTTTCAATACTCCGAAACGACCGGTGAT-CTCGTATT--CA-G------------TC--G-------T---------T-GT--TTTTT--T----AAAAAT---CT--T--ACA-ATA-T-TTTT-TTTTA-AT--CATAACGAAATACCGCAT-ATTATATTGATTTCATTTTATAAACA-TAAACTAC-TACAAACC--GCACAAACAAAAGATACTGGG------TGTCGTTTAAAAATGATTGACTTTCAACCAAAGAACAGTCGTCTCTTTGACGTTCACTCCATCACGCTTCGTCATC
gi|35 : gtattCACTCACGTATATTG--CGCATCTGTGTATATCGCGCATCCAT-G
gi|3 : cgtattACTCGCATAT-TAGA-CGCATTCGTGTATATTGTGCATCCAT-GTTTAAAGACC--AG-GAACT--A-----AGAAAAAAA-A-TACAATTCTCCTATATATGTGTA---TAGA---G--CGCATC-ATA---AGT--GACA-C----------T--------TTCG-CGGTAG-TGACAATTTTGAAGTTTCTCAACAAAATGCCGTTAATTT--TTT--TAAT--CTGC----T-TTTTATACACACTCAAAATACTTGACACTTCGCATCACTGTCTCAATACATAC-----TC-AGTGTTGTCAACACCTGCCCAGGCGTGCAATTAAGATGTCAACTAATATG-CAGAAGCCACATGGCAGCACCCGCTTTCAATACTCCAAAATGACCGATGACACTCGTACA--CA-GACATGTTTTTTTTT--G-------T---------T-TG--TTTTT--T----AAATAT----TAAT--ATATATA-TATATT-TTTTA-AT--CATAACGAAATACCGCAT-ATTATATTGATTTTATTTTATAAACA-TAAACTAC-TACAAACC--ACACAAACAAAAGATACTGGG------TGTCGTTTAAAAATGGTTGATTTTCAACCAAAGAACAGTCGTCTCTTTGACGTTCACTCCATCACACTTCGTCAT
gi|8 : atatctACCCACGTATTATA--CGCATTTGTGTATATCGCGCATCCAT-GTTTTAAGACC--AA-GAGCT--A-----AGAAAAAAA-A-TACAATTCTCCTATATATGTGTA---TAGA---G--CGCATC-ATG---AGT--GACA-C----------T--------TTCG-CGGTAG-TGACAATTGTGAAGTTTCTCAACAGAATGCCGTTAATTT--TTT--TAAT--CTAA----G-TTTTATACACACTCAAAATACTTGACACTTCGCATCACTGTCTCAATACATAC-----TC-AGTGTTGTCAACACCTGCCCAAGCGTGCAATTAAGATGTCAACTGATATG-CAGAAGCCACATGGCAGCACCCGCTTTCAATACTCAAAAATGACCGGTGACACTCGTACA--CA-G------------TC--A-------TGTTTTGTTGT-TT--TTTTT--T----AAAAA----AT--T--ACA-ATA-T-TTTTATTTTA-AT--CATA-------ACCTTAT-ATTATATTGATTTTATTTTATAAACA-TAAACAAC-TACAAACC--GCACAAAC-AAAGATACTGGG------TGTCGTTTATAAATGATTGATTTTCAACCAAAGAACAGTCGTCTCTTTGACGTTCACTCCATCACGCTTCGTCATC
gi|4 : cgtatctACTCACGTAT-TAGA-CGCATTCGTGTATATCGCGCATCTAT-GTTTTA-GACC--AA-GAACT--ACGGTAAGAAAA-AA-A-TACAATTCTCCTATATATGTGTA---TAGA---G--CGCATC-ATA---AGT--GACA-C----------T--------TTCG-CAGTAG-TGACAATTTTGAAGTTTCTCAAGAGAATGCCATTAATTT--TTT--TAAT--CTAC----G-TTTTATACACACTCAAAATACTTGACACTTCGTATCACTGTCTCAATACATAC-----TC-AGTGTTTTCAAAACCTGTCAAGGCATGCAATTAAGATGTCAACTAACATG-CAGAAGCCACATCGCAGCAACCGCTTCCAATACTCCTAAATGACCGGTGACACATGTACA--CA-G------------TCATG-------T---------TGTT--TTTTT--T----TAAAAC---AT--T--ATA-ACA-T-TTTT-TTTTAGAT--CATAACGAAATACCGCAT-ATTATATTGATTTTATTTTATAAACA-TAAACTAC-TACAAACT--GCACAAACAAAAGATACTGGG------TGTCGTTTAAAAATGACTGATTTTCAACCAAAGAACAGTCGTCTCTTTGACATTCACTCCATCACGCTTCGTCAT
gi|6 : gtatctACTCACGTAT-TAGA-CGCATTCGTGTATATCGCGCATCCAT-GTTTTAAGACC--AA-GAACT--G-----AGGAAA-AA-A-TACAATTCTCCTATATATGTGTA---TAAA---G--CGCATC-ATA---AGT--GACA-A----------T--------TTTG-AGGTAG-TGACAATTTTGAAGTTTCTCTAGAGAATGCCGTAATTTT--TTT--TAAT--CTAC----G-TTTTATACACACTCAAAATACATGACACTTCTCATCACTGTCTCAATACATAC-----TCAAGAGTTGTGAACACCTGCTCAGGCATGTAATTAAGATGTCAACTAATATG-CAGAAGCCACATGGCAGCACCCGCTTTCAATACTCTGAAATGACCAGTGACACTCGT--A--CA-G------------TCATG-------T---------T-TTGCTTTTT--TA---AAAAAT---CT--T--ACA-ATATT-TTTT-TTTTA-AT--CATAACTAAATACCGCATAATTATATTGATTTTATTTTATAAACA-TAAACTAC-TACAAACT--GCACAAACAAAAGAAACTGGG------TGTCGTAAAAAAATGATTGATTTTCAACCAAAGAACAGTCGTCTCTTTCACGTTCACTCCATCACGCTTCGTCATt
gi|18 : gtatctACTCACGTAT-TAGA-CGCATTCATGTATATCGCGCATCCAT-GTTTTAAG-TC--AAAGAACT--G-----AGAAAA-AAGA-TACAATTCTCCTATATATGTGTA---TAGA---G--CGCATA-ATA---AGT--GACA-A----------T--------TTCG-AGGTAG-TGACAATTTTGAAGTTTCTCAAGAGAATGCTGTTAATTT--TTT--TAAT--CTAC----G-TTTTATACAAACTCAAAATACTTCACACTTCTCATCACTGTCTCAATACATAC-----GC-AGAGTTGTCAACACCTGCCCAGGCGTGCAATTAAGATATCAACTAATATG-TAGAAGCCATATGGCAGCACCCGCCTTCAATACTCCGAAATGACCGGTGACACTCGTACAGTCATG------------TT--G-------T---------G-TT--TTTTT--T----AAAAAT---CT--T--ACA-ATT-T-TTTT-TTTTA-AT--CATAACAAAATACCGCAT-ATAATATTGATTTTATTT
gi|15 : taactACTCACGTATCAGA--CGCATTGATGTATATCGCGCATCCAT-GTTTTAAGACC--AA-GAACT--A-----AGAAAA-AA-A-ACCAATTCTCCTATATAAGTGTA-----TA---G---------------AGT--G-CA----------------------TCA----TAAGTGACAATTT----------CAAGGTAGTGAC---AATTT--TG----AA-----------G-TTT--------CTCAAGAGAAT-GCCG-TTCTCATCACTGTCTCAATACATAC-----TC-AGAGTTGTAAACTCCTGCCCAAGCATGCAATTAAAATGTCAACTAATATGACA-AAGCCACATGGCAACACCCGCTTTCAATACTCCGAAATGACCGGTAAT-GTCGTACA--CA-G------------TC--A-------TG--------T-TT--TTTTT--T----AAAAAT---CT--T--ACA-ATATT-TTTT-TTTTA-AT--CATAATGAAATACCACAT-ATTATATTGATTTT-TTTTATAAACA-TAAACAAC-TACAAACC--AAACAAACAAAAAGTACAGGG------TGTTGTTTAAAAATGATTGATTTTCAACCAAAGAACAGTTGTCTCTTTGACGTTCACTCCATAACGCTTTGTCAT
gi|27 : tctACTCACGTAT-TAGA-CACATTCGTGTATATCGCGCATCCAT-GTTTTAATACC--AA--NNNN--N-----NNNNNA-GC-A-TAAAGGTGTCTCATA-ATGTGTACAGCATAAAGG--TGTCTC-ATA---AAT--Gt
gi|5 : gtttgtCTCACATATATTG--CGCATCCGCGTATATCGCGCATCCAT-GTTTTAAGATC--AA-GAACT--A-----AGAAAA-AA-A-TACAATTCTCCTATATATGTGTA---TATC---G--CACATC-ATA---ATTTTGAAA-TCTCGTTTAGAT--------TTGG-CTGTGG-CGACATGTTGGAAG----------GAATACC--TGACTTGATATGATAGTTCCCAA----GATTTTATACACACTCAAAATACTTGACACTTCTCATCACTGTCTCAATACATAC-----TC-AGAGTTGTCAACACCTGCTCAGGTGTGCAATTAAGATGTCAACTAATATG-CAGAAGCCACATGGCAGCACCCGCTTTCAATACTCCGAAATGACCGGTGACGCTCATACA--CA-G------------TC--A-------TG--------T-TT--TTTTT--TATAAAAAAAT---CT--T--ACA---A-T-TTTT-TTTTA-AT--CATAACGAAATACCGCAT-ATTATATTGA-TTTAATTTATAAACA-TAAACTAC-TACAAACT--GCACAAACAAAAGATACTGGG------TGTTGTTTAAAAATGATTGATTTTCAACCAAAAAACAGTCGTCTTTTTGACGTTCACTCCATCACACTTCGTCATCtttacagcataaagg
gi|2 : atcCTCACGTATATCG--CGCATCCGTGTATATCACGCATCCAT-GTTTTAAGATC--AA-GAACT--A-----AAAAAA-AA-A-TACAATTCTCCTATATATGTGTA---TATC---A--TGCATC-ATA---A
gi|23 : cagtatatcCTCACGGGCATTA--CGCATTTGTGTATAGTGCACATCCAT-TTTTTTAGACT--GA-AATCTCGG-----GGAAAA-GA-A-TA-AA---TCTTGTGTAACTGTA---TA-A---GCACGCATCAATA---TTT--TACA-A----------T--------TTT-----TGA-CACCATTTTTGAAATGTCTttttgaaatctctttcagattcggctgtggcaacatgttggaaggaatacctgacttgatatgttaaacagaatttgattggtccggaaaaaaaaacagtagactggtactcactaaaaaatattgaatttgttcccaagattttatacacactcaaaatacttgacacttctcatcactgtctcaatacataccatactcagagttgtcaacacatgcctaggcatgcaattaagatgtcaactaatatgcagaagccacatggcagcacccgctttcaatactccgaaataaccggtgacactcgtacacagtcatgtttttttaataaaaaaaaacatacaattcttttttaatcataacgaaatactgcatattatattgattttattttataaacataaactactacaaactgcacaaacaaaagatactgggtgccgtttaaaaatgattgattttcaaccaaagaacatttatctttttgacgttcactccatcacgcttcgtcatc
gi|16 : catgtgtgCATGTATTAGACGCATTCATGTATATCGCACATCCAT-GTTTTAAGACC--AA-GAACT--A-----AGAAAA-AA-AATACAATTCTCCCATATATGTGTA---TAGA---G--CGCATC-ATATTAAGT--GACA-A----------T--------TGCG-AGGTAG-TGACAATTTTGAAGTTTCTCAAGAGAATGCCGTTAATTT--TTT--TAAT--CTAC----A-TTTTATACACACTCAAAATACTTGACACTTCGCATCACTGTCTCAATACATAC-----TC-AGAGTTGTCAACACCTGCCCAGGTGTGCAATTAAGATGTCAACTAATATA-CAGAAGCCACATGGCAGCACCCGCTTTCTATACTCTGAAAT-ACCGatttggctcagtatgtaaattaatccatcttggaaaaaatac
gi|7 : tttctactTA--CACATTCGTGTATATTGCACATCCAT-GTTTTAAGACC--AA-GAACT--G-----AGAAAAAAA-A-TACAATTCTCCTATATATGTGTA---TAAA---G--CGCATC-ATA---AGA--GACA-A----------T--------TTCG-TGGTAG-TGACAATTTTGATGTTTCTTAAGAGAATGCCGTTAATTT--TTT--TAAT--CTAC----G-TTTTATACACCTTTAAAATACATGACACTTCTCATCACTGTCTCAAAACATTC-----TC-AGAGTTGTGAACACCTGCTCAGGCGTGTAATTAAGATGTCAACTAATATG-CAGAAGCCACATGGCAGCACCCGCTTTCAATACTCTGAAATGACCAGTGACACTCGTACA--CA-G------------TC--ATGTTTTTT---------T-TT--TTTTT--T----TTAAAT---CT--G--ACA-AGA-T-TTTT-TTTTA-AT--CATAACAAAATACTGCAT-ATTATATTGATTTTATTTTATAAACA-TAAACTAC-TACAAACC--ACACAAACAAAAGATACTGGG------TGTCGTTTAAAAATGATTGATTTTCAACCAAAGAGCAGTCGTCTCTTTGACGTTCACTCCATCACACCTTGTCATCcatattatattgattttattttataaacataaactactacaaaccacacaaacaaaagatactgggtgtcatttaaaaattaatgatttccaaccaaaaaacagtcgtctctttgaagttcactccatcacgcttcatcat
gi|11 : aatttacgtaaagaG--CGCATCCGTGTATATCGCGCATCCAT-GTTTTAAGATC--AA-GAACT--A-----AGAAAA-AA-A-TACAATTCTCCTATATATGTGTA---TATA---G--CGCATC-ATA---AGT--GACA-C----------T--------TTTG-CGGTAG-TGACAATTTTGAAATTTCTCAAGAGAATGCTGTTAATTT--TTT--TAAT--CTAT----G-TTTTATACACACTATAAATACTTGACACTTCGCATCAATGTCTCAATACATAC-----TC-AGAGTTGTCAACACCTGTCCAGGCATGCAGTTAAGATGTCAACTAATATG-CAGAAGTCACATGGCAGCA-CCACTTTTAATACTTCGAAATGACCGGTGAT-CTTGTACG--CA-G------------TCG-G-------G---------G-TT--TTTTT--T----AAAAAT---CT--T--ACA-ATA-TATTTT-TTTTA-AT--CATAACGAAATACCACAT-ATTATATTGATTTTATTTTATAAACA-TAAACTAC-TACAAACC--GCACAAACAAAAGATAATGGG------TGTCGTTTTAAAATGATTGACTTTCAACCAAAGAACAGTTGTCTCTTTGACATTCACTCCATCACGCTTTGTCATC
gi|26 : GTACTTATGTATATCGCGCATCCCT-TCTCGAAGATCTTAA-AAGTT--G-----GAAAAA-AA-A-CGCG-----CCTA-ATACGTG
gi|14 : taatctttcaaaatatacatggaaaattatcagaaaaagaaaatttacattaaaaaaaaaatgaaatcttctATATGTGTATATCGTGCAT-CATAATTTTGAAATC--agt
gi|17 : catttattaaaaatcagtagatttgaaaaaatacaattctcctatATT--A-----AAAAAA-AA-A-TGAAAT--TTCTGTACTTATGTA---TATT---G--CGCATC-tcgttaagattcggctgtggcgacatgttggaaggaatacctgactcgatatgataatttcccaagattttatacacactcaaaatacttgacacttctcatcactgtctcaatacatactcagagttgtcaacacctgctcaggcgtgcaattaagatgtcaactaatatgcagaagccacatggcagcacccgctttcaatactccgaaattaccagtgacgctcgtacagtcatgtttttttttataaaaaatcttacaatttttttttaatcataacgaaataatgcatattatattgatttaatttataaacataaactactacaaaccacacaaacaaaagatactgggtgtcgtttaaaaatgattgattttcaacaaaaaaacagtcgtctttttgatgttcactccatcacgcttcgtcatc
gi|1 : acaaatcgcacaaacaaaagatatacatgtgaataaatacattcatgatgataacagtattgcatttattccgcatttgacaatacactttcacctttacgtaaaccagtctgtgctattttaaatgttatatccggtcacgacataaataagcagtaaacactttcttattttttgatttatttgacatgttttactgcatatataatgtataatgactgaatttgaaaaaaacattctccgctaggtaaatcatcacctataatcgagctcacatgaagaaattgtcctgaaattaatatctgaacatacccatgtgcaaaactttttctgaatcgataaatctttgaaaattttacT--A-----AAAAAA-AA-A-TGAAA-TCTTCTGTACTTATGTA---TATC---G--CGCATC-ccttctcaaagatcttaaaagttgaaaaaaaaaaaacgcgcataatatgtgaggataaa
gi|14 : gtttttatttcataaaatgtttagtatgatttcaaagcttgaacatattatatattaatatcataacgaaataccacatattatattgattttattttataaacataaactactacaaatcgcacaaacaaaagatataggtgtgaataaatacatttatgacaataacagtattgcatttattccacattcgtcaatacactttcacctttacgtaaaccagtctgtgctattttaaatgttatttctggtcacgactaaaataagcagtaaacactttcttatttttttatttatttgacacgttttactgcatatataatgtataaggactgaatttgaaaaaaacattctccgctaggtaaatcatcacctaaaatcgagctcacatgaagaaattttcctgaaattaatatctgaacatactggtgtacaaaacttttcctgaatcgataaatctttgaaaattttacaAAA-AA-A-TACAATTCTCCTATATATGTGTA---TATC---G--TGCATC-ATA---ATTTTGAAATC----------TCGTTAAGATTCGGCTGTGG-CGACATGTTGGAAG----------GAATACC--TGACTCGATATGATAAT--TTCCCAAGA-TTTTATACACACTCAAAATACTTGACACTTCTCATCACTGTCTCAATACATAC-----TC-AGAGTTGTCAACACCTGCTCAGGCGTGCAATTAAGATGTCAACTAATATG-CAGAAGCCACATGGCAGCACCCGCTTTCAATACTCCGAAATTACCAGTGACGCTCGT--A--CA-G------------TC--A-------TG--------T-TT--TTTTT--TATA-AAAAAT---CT--T--ACA---A-T-TTTT-TTTTA-AT--CATAACGAAATAATGCAT-ATTATATTGA-TTTAATTTATAAACA-TAAACTAC-TACAAACC--ACACAAACAAAAGATACTGGG------TGTCGTTTAAAAATGATTGATTTTCAACAAAAAAACAGTCGTCTTTTTGATGTTCACTCCATCACGCTTCGTCATCccttctcgaagatcttaaaagttggaaaaaaacgtgcatagtacgtgaggataaacggtaggttcatagtgttatagaactatgaaccacacatttctggcatagaaaataaatattaagaaatcaataaatctattttattattgtaatgacagtattattctgatattaggtat
gi|34 : catttattaaaaatcagtagatttgGT--GACA-A----------T--------TTCG-AGGTAG-TGACAACTTGGAAGTTTCTCAAGGGAATGCC
gi|2 : -TTTTATACACACTCAAAATACTTGACACTTCTCATCACTGTCTCAATACATACCATACTC-AGAGTTGTCAACACATGCCTAGGCATGCAATTAAGATGTCAACTAATATG-CAGAAGCCACATGGCAGCACCCGCTTTCAATACTCCGAAATAACCGGTGACACTCGTACA--CA-G------------TC--A-------T---------G-TT--TTTTTAAT----AAAAAAAAACA--T--ACA-AT----TCTT-TTTTA-AT--CATAACGAAATACTGCAT-ATTATATTGATTTTATTTTATAAACA-TAAACTAC-TACAAACT--GCACAAACAAAAGATACTGGG------TGCCGTTTAAAAATGATTGATTTTCAACCAAAGAACATTTATCTTTTTGACGTTCACTCCATCACGCTTCGTCATCtt
gi|28 : cagtatatcctcacgtatatcgcgcatccgtgtatatcacgcatccatgttttaagatcaagaactaaaaaaaaaatacaattctcctatatatgtgtatatcatgcatcataattttgaaatctctttcagattcggctgtggcaacatgttggaaggaatacctgacttgatatgttaaacagaatttgattggtccggaaaaaaaaacagtagactggtactcactaaaaaatattgaatttgttcccaagaACACTCCAACTCCTTGACACTTCTCATCACC-TCTCAATGCATAC-----TC-CTAGTTGTCAACACCAGTTCAACTTCTCCATTAAGAT
gi|1 : AAAG---CT--TGAACA--TA-T-TATA-TATTA-ATATCATAACGAAATACCACAT-ATTATATTGATTTTATTTTATAAACA-TAAACTAC-TACAAATC--GCACAAACAAAAGATA-TAGG------TGT
gi|24 : gtttttatttcataaaatgtttagtatgatttcT-TTTTA-AT--CATAACAAAATACCGCAT-ATAATATTGATTTTATTTTATAAACA-TAAACTAC-TACAAACC--GCACAAACAAAAGATACTGGGAGTGGGTGTCGTTTAAAAATTATTGATTTTCAACCAAAGAACAGTCGTCTCTTTGACATTCACTCCATCACGCTTCGTCATCgaataaatacatttatgacaataacagtattgcatttattccacattcgtcaatacactttcacctttacgtaaaccagtctgtgctattttaaatgttatttctggtcacgactaaaataagcagtaaacactttcttatttttttatttatttgacacgttttactgcatatataatgtataaggactgaatttgaaaaaaacattctccgctaggtaaatcatcacctaaaatcgagctcacatgaagaaattttcctgaaattaatatctgaacatactggtgtacaaaacttttcctgaatcgataaatctttgaaaattttacataaaaaaaaaatgaaatcttctgtacttatgtatatcgcgcatcccttctcgaagatcttaaaagttggaaaaaaacgtgcatagtacgtgaggataaacggtaggttcatagtgttatagaactatgaaccacacatttctggcatagaaaataaatattaagaaatcaataaatctattttattattgtaatgacagtattattctgatattaggtat
gi|29 : -AT--CACAATGAAATACCACAT-ATTAT-TTAGTC---TTTTATAAACACTAA--CACGTACAAACCATGCACAAA
gi|16 : -GAAATACCGCAT-ATTATATTGATTTTATTTTATAAACA-TAAACTAC-TACAAACC--ACACAAACAAAAGATACTGGG------TGTCATTTAAAAATTAATGATTTCCAACCAAAAAACAGTCGTCTCTTTGAAGTTCACTCCATCACGCTTCATCAT
gi|31 : tttctactcatgtattagacgcattcatgtatatcgcacatccatgttttaagaccaagaactaagaaaaaaaatacaattctcccatatatgtgtatagagcgcatcatattaagtgacaattgcgaggtagtgacaattttgaagtttctcaagagaatgccgttaatttttttaatctacattttatacacactcaaaatacttgacacttcgcatcactgtctcaatacatactcagagttgtcaacacctgcccaggtgtgcaattaagatgtcaactaatatacagaagccacatggcagcacccgctttctatactctCAACCAAAGAACAGTCGTCTCTTTGATGTTCACTCCATCACGCTTCGTCATC
gi|30 : CAACCAAAGAACGGTCGTCTCTTTGATGTTCACTCCATCACGCTTCGTCATC
gi|33 : CAACCAAAGAGCAGTCGTCTCTTTGATGTTCACTCCAACACGCTTCGTCAT
gi|32 : CAACCGAAGAACAGTCGTCTCTTTGAAGTTCACTCCATCAAGCTTCGTCAT
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|19 ): AACGTGATAGGCTACAATGGAAATTAGAAGTAAACACCAAACAACTCGATATTTCTTGATTTATTTGACAAGATTTTTACTGCATACGTAATGAATATAAACTGAATTTGAATAAAAGTTTCTCAGCGAGGTAAGTCATCATCTATAATCAACCTTGTTACCTTCCATTAAGAAATTGTCCTGAAATTAACATCTAAACATACCAGTCTCCAAAACATGCCCGAAAAATCATAAATCGTCAAGTATGACCAAGTTCTGAAAACCTGAAGAAGAAATCCAATGATCTTGGACATATAACCTTGAAAAAAAAATGAAAATGTCTTTACTTGTGTATAGACTTGTTAGAAAAAACATGCACACTATACGCAAGTAAAAACCAGTAGTTAT
Unaligned ( gi|20 ): ATTTACTGCATATACATGGACTATGGAGTGATTTGAATAAAAGGTTCTCCTTCAGGTGGATCCTTGTCTATAATCGACCGCCCATACAGAAATTGTCCTAAAATTAATTAACCAGTCACCAAAACATGTCTCGTTGATCTTTAACCAGTTATCTTGAAAGAAAAAGTGAAATCTTTACCCGTGTATAATGCACATCCCTTCTTTAAGATCTTAAAAGTTGGATATAAATATGCACATTACATTTGAATAGAAATGGTAATGAGTGTTTTAGATGGAAATATGAAATCAAAATACTTACTATGTATGAAAATCTACTTACTATGNNNNNNNNNNATGAAAATCTACTTACTATGTATGA
Unaligned ( gi|21 ): GTTGTGAATCAGAGCAGAAATTTTTAATCGAAGTTTAAATGATTGTTTAACGATTATAATCAGTATCAATTTATAACAGGTGTTCAATATATAATAACCTGAAATGGTTCCAGTGTCTGATTTTGAGTTTTTCCTGGAAAGAGAATAGTCATTTGTCTTTGCCAGTCTTGTTTGTAAGTTGGTCTGGATGGGTTTGATTACCTGCTTGACTTACTTTTCATCTAAACAGCGTTCATTTTATTTACAACTCTTACACAATACATGTAATAAGTATAGTTTGATGACAAACTGAAACAAAAATCCATCATCAGTGATTGTGCCTGTTTGGTAACAATTTGGAGATTAAT
Unaligned ( gi|22 ): TCTTGTTGGTAAGTTGGCCTAGGCGTGTTAGATTTGCTGCCTGCCTTAATTTTTGTCCAATCATTTATATATAGTGTTCAAATCATTTATAAGAAAATATGACAACACTTACACAGAAGTTAGTACAATTCATTGATGAACAAAAATCCATCATTGATGATGGCAGTGCTGGTGGCATTTGGCAAAAATTCTAAGGTAAATTGATTAAT
Unaligned ( gi|25 ): TTGGAAATTGGAGCTGAACTCTTTAATTTCTTAATCTGATTTTTCAAACAATGAAATTCTATAATATTCAAAAACTCAAAATGGTTCCAAATGTCTGATTTCTCCCAGGGAAAGAGTCATTTATCTTTATCAGCCATGTTGGCTAAATTGG
Alignments
lowQualScore : 1111111 11111111111 1 111111111111 22222222222222222222 1111
lowQualScore : 5555555 88 77777777 5 1 1 333 33333 22 2 333 66 22222222222 88888888 444 33 2 1 77 77 33 5555 2 1 55555 2 2 33 33 0 33 2 333333333333 77777777777777777777 2 33 33 5555 444 33 33 66666 5 2 2 33 2 1 2 33 666666 2
lowQualScore : ....... .. ........ . . . ... ..... .. . ... .. ........... ........ ... .. . . .. .. .. .... . . ..... . . .. .. . .. . ............ .................... . .. .. .... ... .. .. ..... . . . .. . . . .. ...... .
lowQualScore : 7777777 22 00000000 2 7 7 555 99999 88 0 999 11 11111111111 55555555 111 22 4 1 33 33 77 7777 5 0 99999 4 5 44 44 3 77 7 777777777777 44444444444444444444 7 77 77 7777 444 44 44 11111 0 4 2 11 1 3 2 11 888888 4
consensus : CACTCACGTATAT-TG--CGCATTCGTGTATATCGCGCATCCATGTTTTAAGACC--AAGAACT--A-----AGAAAA-AA-A-TACAATTCTCCTATATATGTGTA---TATA---G--CGCATC-ATA---AGT--GACAN----------TTTCG--------CGG---TAGTGACA--A-TTTTGAAGTTTCTCAAGAGAATGCCGTTAATTT--TTT--TAAT--CTAC----G-TTTTATACACACTCAAAATACTTGACACTTCGCATCACTGTCTCAATACATAC-----TC-AGAGTTGTCAACACCTGCCCAGGCGTGCAATTAAGATGTCAACTAATATG-C--AGAAG--CCACATGGCAGCACCCGCTTTCAATACTCCGAAATGACCGGTGACGCTCGTACA--CA-G------------TC--G-------T---------T-TT--TTTTT--T----AAAAAT---CT--T--ACA-ATA-T-TTTT-TTTTA-AT--CATAACGAAATACCGCAT-ATTATATTGATTTTATTTTATAAACATAAACTAC-TACAAACC--GCACAAACAAAAGATAC------TGGGTGTCGTTTAAAAATGATTG-ATTTTCAACCAAAGAACAGTCGTCTCTTTGACGTTCACTCCATCACGCTTCGTCATC
Reference ( family-3789 ) : CACTCACGTATAT-TG--CGCATTCGTGTATATCGCGCATCCATGTTTTAAGACC--AAGAACT--A-----AGAAAA-AA-A-TACAATTCTCCTATATATGTGTA---TATA---G--CGCATC-ATA---AGT--GACAN----------TTTCG--------CGG---TAGTGACA--A-TTTTGAAGTTTCTCAAGAGAATGCCGTTAATTT--TTT--TAAT--CTAC----G-TTTTATACACACTCAAAATACTTGACACTTCNCATCACTGTCTCAATACATAC-----TC-AGAGTTGTCAACACCTGCCCAGGCGTGCAATTAAGATGTCAACTAATATG-C--AGAAG--CCACATGGCAGCACCCGCTTTCAATACTCCGAAATGACCGGTGACACTCGTACA--CA-G------------TC--G-------T---------T-TT--TTTTT--T----AAAAAT---CT--T--ACA-ATA-T-TTTT-TTTTA-AT--CATAACGAAATACCGCAT-ATTATATTGATTTTATTTTATAAACATAAACTAC-TACAAACC--GCACAAACAAAAGATAC------TGGGTGTCGTTTAAAAATGATTG-ATTTTCAACCAAAGAACAGTCGTCTCTTTGACGTTCACTCCATCACGCTTCGTCATC
gi|1 : AAAG---CT--TGAACA--TA-T-TATA-TATTA-ATATCATAACGAAATACCACAT-ATTATATTGATTTTATTTTATAAACATAAACTAC-TACAAATC--GCACAAACAAAAGATA-------TAGGTGT-------GAATAAATACATTTATGAC--AATAACAGTA------TTG-CATTTATTCCA-CA---TTCGTCA
gi|1 : gtttttatttcataaaatgtttagtatgatttcT--A-----AAAAAA-AA-A-TGAAA-TCTTCTGTACTTATGTA---TATC---G--CGCATC-atacactttcacctttacgtaaaccagtctgtgctattttaaatgttatttctggtcacgactaaaataagcagtaaacactttcttatttttttatttatttgacacgttttactgcatatataatgtataaggactgaatttgaaaaaaacattctccgctaggtaaatcatcacctaaaatcgagctcacatgaagaaattttcctgaaattaatatctgaacatactggtgtacaaaacttttcctgaatcgataaatctttgaaaattttacataaaaaaaaaatgaaatcttctgtacttatgtatatcgcgcatcccttctcgaagatcttaaaagttggaaaaaaacgtgcatagtacgtgaggataaacggtaggttcatagtgttatagaactatgaaccacacatttctggcatagaaaataaatattaagaaatcaataaatctattttattattgtaatgacagtattattctgatattaggtat
gi|1 : gtttttatttcataaaatgtttagtatgatttcaaagcttgaacatattatatattaatatcataacgaaataccacatattatattgattttattttataaacataaactactacaaatcgcacaaacaaaagatataggtgtgaataaatacatttatgacaataacagtattgcatttattccacattcgtcaatacactttcacctttacgtaaaccagtctgtgctattttaaatgttatttctggtcacgactaaaataagcagtaaacactttcttatttttttatttatttgacacgttttactgcatatataatgtataaggactgaatttgaaaaaaacattctccgctaggtaaatcatcacctaaaatcgagctcacatgaagaaattttcctgaaattaatatctgaacatactggtgtacaaaacttttcctgaatcgataaatctttgaaaattttacaGTACTTATGTATATCGCGCATCCCTTCTCGAAGATCTTAAAAGTT--------GGAAAA-AA-A-ccttctcgaagatcttaaaagttggaaaaaaacgtgcatagtacgtgaggataaacggtaggttcatagtgttatagaactatgaaccacacatttctggcatagaaaataaatattaagaaatcaataaatctattttattattgtaatgacagtattattctgatattaggtat
gi|10 : gtttttatttcataaaatgtttagtatgatttcaaagcttgaacatattatatattaatatcataacgaaataccacatattatattgattttattttataaacataaactactacaaatcgcacaaacaaaagatataggtgtgaataaatacatttatgacaataacagtattgcatttattccacattcgtcaatacactttcacctttacgtaaaccagtctgtgctattttaaatgttatttctggtcacgactaaaataagcagtaaacactttcttatttttttatttatttgacacgttttactgcatatataatgtataaggactgaatttgaaaaaaacattctccgctaggtaaatcatcacctaaaatcgagctcacatgaagaaattttcctgaaattaatatctgaacatactggtgtacaaaacttttcctgaatcgataaatctttgaaaattttacataaaaaaaaaatgaaatcttctCACTCACGTATAT-TG--CACATCTGTGTATATCGCGCATCCATGTTTTAAGATC--AAGAACT--A-----AGAAAA-AA-A-TACAATTCTCCTATATATGTGTA---TATA---G--CGCATC-ATA---AGT--GTCAC----------TTTTG--------CGA---TAGTGACA--A-TTTTGAAGTTTCTCAAGAGAATGCCGTTAATTT--T-T--TAAT--CTAC----G-TTTTATACACACTCAAAATACTTGACACTTCGCATCATTGTCTCAATACATAC-----TC-AGAGTGGTCAACACCTGCCCAGGCGTGCAATTAAGATGTCAACTAATATG-C--AGAAG--CCACATGGCAGCACCCACTTTCAATACTCCGAAATGATCGGTGAT-CTCGTACA--CA-G------------TC--G-------T---------T-GT--TTTTT--T----AAAAAT---CT--T--ACA-A-A-T-TTTT-TTTTT-AT--CATAACGAAATACCGCAT-ATTATATTGA-TTCATTTTATAAACATAAACTTC-TACAAACC--GCACAAACAAAAGATAC------TGGGTGTCGTTTAAAAATGATTG-ACTTTCAACCAAAGAACAGTCGTCTCTTTGACGTTCACTCCATCACGCTTCGTCATcgtgcatagtacgtgaggataaacggtaggttcatagtgttatagaactatgaaccacacatttctggcatagaaaataaatattaagaaatcaataaatctattttattattgtaatgacagtattattctgatattaggtat
gi|11 : ttG--CGCATCCGTGTATATCGCGCATCCATGTTTTAAGATC--AAGAACT--A-----AGAAAA-AA-A-TACAATTCTCCTATATATGTGTA---TATA---G--CGCATC-ATA---AGT--GACAC----------TTTTG--------CGG---TAGTGACA--A-TTTTGAAATTTCTCAAGAGAATGCTGTTAATTT--TTT--TAAT--CTAT----G-TTTTATACACACTATAAATACTTGACACTTCGCATCAATGTCTCAATACATAC-----TC-AGAGTTGTCAACACCTGTCCAGGCATGCAGTTAAGATGTCAACTAATATG-C--AGAAG--TCACATGGCAGCA-CCACTTTTAATACTTCGAAATGACCGGTGAT-CTTGTACG--CA-G------------TCG-G-------G---------G-TT--TTTTT--T----AAAAAT---CT--T--ACA-ATA-TATTTT-TTTTA-AT--CATAACGAAATACCACAT-ATTATATTGATTTTATTTTATAAACATAAACTAC-TACAAACC--GCACAAACAAAAGATAA------TGGGTGTCGTTTTAAAATGATTG-ACTTTCAACCAAAGAACAGTTGTCTCTTTGACATTCACTCCATCACGCTTTGTCATC
gi|12 : CACTCACGTATAT-TG--CGCATCTGTGTATATCGCGCATCCATGTTTTAAGATC--AAGAACT--G-----AGAAAA-AA-A-TACAATTCTCCTATATATGTGTA---TATA---G--CGCATC-ATA---AGT--GACAA----------TTTCG--------CGG---TAGTGACA--A-TTTTG------------------CCGTTAATTT--TTT--TAAT--CTAC----G-TTTTATACACACTCAAAATACTTGACACTTCGCATCACTGTCTCAATACGTAC-----TC-AGAGTTGTCAACACCTGTCCATGCGTGCAATTAAGATGTCAACTAATATG-C--AGAAG--CCACATGGCAGCACCTGCTTTCAATACTCCGAAATGACCGGTGAT-TTCGTACA--CA-G------------TC--A-------T---------T-TT--TTTTT--TA---AAAAAT---CT--T--ACA-AAT-T-TTTT-TTTTA-AT--CATAACGAAATACCCCAT-ATTATATTGA-TTTATTTTATAAACATAAACTAC-TACAAACC--GCACAAACAAAAGATAC------TGGATGTCGTTTAAAAATGGTTG-ACTTTCAACCAAAGAACAGTTGTCTCTTTGACGTTCACTTCATCACGCTTCGTCATC
gi|13 : ttCACTCACCTATAT-TG--CGCATCTGTGTATATCGCGCATCCATGTTTTAAGATC--AAGAACT--A-----AGAAAA-AA-A-TACAATTCTCCTATAAATGTGTA---TATA---G--CGCATC-ATA---AGT--GACAC----------TTTCG--------CGG---TAGTGACA--A-TTTTGAAGTTTCTCAAAAGAATGCCGTTAATTT--TTT--TAAT--CTAC----G-TTTTATACACACTCAAAATACTTGACACTTCGCATCA---------------C-----TC--------TCAATACATACACAG-----------AGTTGTCAAC--ACCTG-CCCAGGCGTGCCACATGGCAGCACCCGCTTTCAATACTCCGAAACGACCGGTGAT-CTCGTATT--CA-G------------TC--G-------T---------T-GT--TTTTT--T----AAAAAT---CT--T--ACA-ATA-T-TTTT-TTTTA-AT--CATAACGAAATACCGCAT-ATTATATTGATTTCATTTTATAAACATAAACTAC-TACAAACC--GCACAAACAAAAGATAC------TGGGTGTCGTTTAAAAATGATTG-ACTTTCAACCAAAGAACAGTCGTCTCTTTGACGTTCACTCCATCACGCTTCGTCATC
gi|14 : gtattAAA-AA-A-TACAATTCTCCTATATATGTGTA---TATC---G--TGCATC-ATA---ATTTTGA-AA----------TCTCGTTAAGATTCGGCTGTGGCGACA--T-GTTGGAAG----------GAATACC--TGACTCGATATGATAAT--TTCCCAAGA-TTTTATACACACTCAAAATACTTGACACTTCTCATCACTGTCTCAATACATAC-----TC-AGAGTTGTCAACACCTGCTCAGGCGTGCAATTAAGATGTCAACTAATATG-C--AGAAG--CCACATGGCAGCACCCGCTTTCAATACTCCGAAATTACCAGTGACGCTCGT--A--CA-G------------TC--A-------TG--------T-TT--TTTTT--TATA-AAAAAT---CT--T--ACA---A-T-TTTT-TTTTA-AT--CATAACGAAATAATGCAT-ATTATATTGA-TTTAATTTATAAACATAAACTAC-TACAAACC--ACACAAACAAAAGATAC------TGGGTGTCGTTTAAAAATGATTG-ATTTTCAACAAAAAAACAGTCGTCTTTTTGATGTTCACTCCATCACGCTTCGTCATC
gi|15 : catttattaaaaatcagtagatttgACTCACGTATCA-GA--CGCATTGATGTATATCGCGCATCCATGTTTTAAGACC--AAGAACT--A-----AGAAAA-AA-A-ACCAATTCTCCTATATAAGTGTA---TAGA---G--TGCATC-ATA---AG----------------------------------------TGACA--A-TTT----------CAAGGTAGTGAC---AATTT--TG----AA-----------G-TTT--------CTCAAGAGAAT-GCCG-TTCTCATCACTGTCTCAATACATAC-----TC-AGAGTTGTAAACTCCTGCCCAAGCATGCAATTAAAATGTCAACTAATATGAC--A-AAG--CCACATGGCAACACCCGCTTTCAATACTCCGAAATGACCGGTAATG-TCGTACA--CA-G------------TC--A-------TG--------T-TT--TTTTT--T----AAAAAT---CT--T--ACA-ATATT-TTTT-TTTTA-AT--CATAATGAAATACCACAT-ATTATATTGATTTT-TTTTATAAACATAAACAAC-TACAAACC--AAACAAACAAAAAGTAC------AGGGTGTTGTTTAAAAATGATTG-ATTTTCAACCAAAGAACAGTTGTCTCTTTGACGTTCACTCCATAACGCTTTGTCAT
gi|16 : tctACTCATGTAT-T-AGA-CGCATTCATGTATATCGCACATCCATGTTTTAAGACC--AAGAACT--A-----AGAAAA-AA-AATACAATTCTCCCATATATGTGTA---TAGA---G--CGCATC-ATATTAAGT--GACAA----------TTGCG--------AGG---TAGTGACA--A-TTTTGAAGTTTCTCAAGAGAATGCCGTTAATTT--TTT--TAAT--CTAC----A-TTTTATACACACTCAAAATACTTGACACTTCGCATCACTGTCTCAATACATAC-----TC-AGAGTTGTCAACACCTGCCCAGGTGTGCAATTAAGATGTCAACTAATATA-C--AGAAG--CCACATGGCAGCACCCGCTTTCTATACTCTGAAAT-ACCGt
gi|16 : tttctGAAATACCGCAT-ATTATATTGATTTTATTTTATAAACATAAACTAC-TACAAACC--ACACAAACAAAAGATAC------TGGGTGTCATTTAAAAATTAATG-ATTTCCAACCAAAAAACAGTCGTCTCTTTGAAGTTCACTCCATCACGCTTCATCATcatattatattgattttattttataaacataaactactacaaaccacacaaacaaaagatactgggtgtcatttaaaaattaatgatttccaaccaaaaaacagtcgtctctttgaagttcactccatcacgcttcatcat
gi|17 : tttctactcatgtattagacgcattcatgtatatcgcacatccatgttttaagaccaagaactaagaaaaaaaatacaattctcccatatatgtgtatagagcgcatcatattaagtgacaattgcgaggtagtgacaattttgaagtttctcaagagaatgccgttaatttttttaatctacattttatacacactcaaaatacttgacacttcgcatcactgtctcaatacatactcagagttgtcaacacctgcccaggtgtgcaattaagatgtcaactaatatacagaagccacatggcagcacccgctttctatactctATT--A-----AAAAAA-AA-A-TGAAAT--TTCTGTACTTATGTA---TATT---G--CGCATC-
gi|17 : acaaatcgcacaaacaaaagatatacatgtgaataaatacattcatgatgataacagtattgcatttattccgcatttgacaatacactttcacctttacgtaaaccagtctgtgctattttaaatgttatatccggtcacgacataaataagcagtaaacactttcttattttttgatttatttgacatgttttactgcatatataatgtataatgactgaatttgaaaaaaacattctccgctaggtaaatcatcacctataatcgagctcacatgaagaaattgtcctgaaattaatatctgaacatacccatgtgcaaaactttttctgaatcgataaatctttgaaaattttacGTACTTATGTATATTGCGCATCCCTTCTCAAAGATCTTAAAAGTT---------GAAAA-AA-A-AAAAACGCGCATA-ATATGTGccttctcaaagatcttaaaagttgaaaaaaaaaaaacgcgcataatatgtgaggataaa
gi|18 : acaaatcgcacaaacaaaagatatacatgtgaataaatacattcatgatgataacagtattgcatttattccgcatttgacaatacactttcacctttacgtaaaccagtctgtgctattttaaatgttatatccggtcacgacataaataagcagtaaacactttcttattttttgatttatttgacatgttttactgcatatataatgtataatgactgaatttgaaaaaaacattctccgctaggtaaatcatcacctataatcgagctcacatgaagaaattgtcctgaaattaatatctgaacatacccatgtgcaaaactttttctgaatcgataaatctttgaaaattttacattaaaaaaaaaatgaaatttctACTCACGTAT-T-AGA-CGCATTCATGTATATCGCGCATCCATGTTTTAAGTCA--AAGAACT--G-----AGAAAA-AAGA-TACAATTCTCCTATATATGTGTA---TAGA---G--CGCATA-ATA---AGT--GACAA----------TTTCG--------AGG---TAGTGACA--A-TTTTGAAGTTTCTCAAGAGAATGCTGTTAATTT--TTT--TAAT--CTAC----G-TTTTATACAAACTCAAAATACTTCACACTTCTCATCACTGTCTCAATACATAC-----GC-AGAGTTGTCAACACCTGCCCAGGCGTGCAATTAAGATATCAACTAATATG-T--AGAAG--CCATATGGCAGCACCCGCCTTCAATACTCCGAAATGACCGGTGACACTCGTACAGTCATG------------TT--G-------T---------G-TT--TTTTT--T----AAAAAT---CT--T--ACA-ATT-T-TTTT-TTTTA-AT--CATAACAAAATACCGCAT-ATAATATTGATTTTATTTaggataaa
gi|2 : taactCTCACGTATAT-CG--CGCATCCGTGTATATCACGCATCCATGTTTTAAGATC--AAGAACT--A-----AAAAAA-AA-A-TACAATTCTCCTATATATGTGTA---TATC---A--TGCATC-ATA---A
gi|2 : cagtatatc-TTTTATACACACTCAAAATACTTGACACTTCTCATCACTGTCTCAATACATACCATACTC-AGAGTTGTCAACACATGCCTAGGCATGCAATTAAGATGTCAACTAATATG-C--AGAAG--CCACATGGCAGCACCCGCTTTCAATACTCCGAAATAACCGGTGACACTCGTACA--CA-G------------TC--A-------T---------G-TT--TTTTTAAT----AAAAAAAAACA--T--ACA-AT----TCTT-TTTTA-AT--CATAACGAAATACTGCAT-ATTATATTGATTTTATTTTATAAACATAAACTAC-TACAAACT--GCACAAACAAAAGATAC------TGGGTGCCGTTTAAAAATGATTG-ATTTTCAACCAAAGAACATTTATCTTTTTGACGTTCACTCCATCACGCTTCGTCATCttttgaaatctctttcagattcggctgtggcaacatgttggaaggaatacctgacttgatatgttaaacagaatttgattggtccggaaaaaaaaacagtagactggtactcactaaaaaatattgaatttgttcccaagattttatacacactcaaaatacttgacacttctcatcactgtctcaatacataccatactcagagttgtcaacacatgcctaggcatgcaattaagatgtcaactaatatgcagaagccacatggcagcacccgctttcaatactccgaaataaccggtgacactcgtacacagtcatgtttttttaataaaaaaaaacatacaattcttttttaatcataacgaaatactgcatattatattgattttattttataaacataaactactacaaactgcacaaacaaaagatactgggtgccgtttaaaaatgattgattttcaaccaaagaacatttatctttttgacgttcactccatcacgcttcgtcatc
gi|23 : cagtatatcctcacgtatatcgcgcatccgtgtatatcacgcatccatgttttaagatcaagaactaaaaaaaaaatacaattctcctatatatgtgtatatcatgcatcataattttgaaatctctttcagattcggctgtggcaacatgttggaaggaatacctgacttgatatgttaaacagaatttgattggtccggaaaaaaaaacagtagactggtactcactaaaaaatattgaatttgttcccaagaCTCACGGGCAT-TA--CGCATTTGTGTATAGTGCACATCCATTTTTTTAGACT--GAAATCTCGG-----GGAAAA-GA-A-TA-AA---TCTTGTGTAACTGTA---TA-A---GCACGCATCAATA---TTT--TACAA----------TTTT------------------TGACACCATTTTTGAAATGTCT
gi|24 : catgtgtgT-TTTTA-AT--CATAACAAAATACCGCAT-ATAATATTGATTTTATTTTATAAACATAAACTAC-TACAAACC--GCACAAACAAAAGATACTGGGAGTGGGTGTCGTTTAAAAATTATTG-ATTTTCAACCAAAGAACAGTCGTCTCTTTGACATTCACTCCATCACGCTTCGTCATCatttggctcagtatgtaaattaatccatcttggaaaaaatac
gi|26 : GTACTTATGTATATCGCGCATCCCTTCTCGAAGATCTTAAAAGTT--G-----GAAAAA-AA-A-CGCG-----CCTA-ATACGTG
gi|27 : taatctttcaaaatatacatggaaaattatcagaaaaagaaaatttacattaaaaaaaaaatgaaatcttctACTCACGTAT-T-AGA-CACATTCGTGTATATCGCGCATCCATGTTTTAATACC--AA-NNNN--N-----NNNNNA-GC-A-TAAAGGTGTCTCATA-ATGTGTACAGCATAAAGG--TGTCTC-ATA---AAT--Gagt
gi|28 : gtttgtACACTCCAACTCCTTGACACTTCTCATCACC-TCTCAATGCATAC-----TC-CTAGTTGTCAACACCAGTTCAACTTCTCCATTAAGATtttacagcataaagg
gi|29 : -AT--CACAATGAAATACCACAT-ATTAT-TTAGTC---TTTTATAAACACTAAC-ACGTACAAACCATGCACAAA
gi|3 : CGCATAT-TAGACGCATTCGTGTATATTGTGCATCCATGTTTAAAGACC--AGGAACT--A-----AGAAAAAAA-A-TACAATTCTCCTATATATGTGTA---TAGA---G--CGCATC-ATA---AGT--GACAC----------TTTCG--------CGG---TAGTGACA--A-TTTTGAAGTTTCTCAACAAAATGCCGTTAATTT--TTT--TAAT--CTGC----T-TTTTATACACACTCAAAATACTTGACACTTCGCATCACTGTCTCAATACATAC-----TC-AGTGTTGTCAACACCTGCCCAGGCGTGCAATTAAGATGTCAACTAATATG-C--AGAAG--CCACATGGCAGCACCCGCTTTCAATACTCCAAAATGACCGATGACACTCGTACA--CA-GACATGTTTTTTTTT--G-------T---------T-TG--TTTTT--T----AAATAT----TAAT--ATATATA-TATATT-TTTTA-AT--CATAACGAAATACCGCAT-ATTATATTGATTTTATTTTATAAACATAAACTAC-TACAAACC--ACACAAACAAAAGATAC------TGGGTGTCGTTTAAAAATGGTTG-ATTTTCAACCAAAGAACAGTCGTCTCTTTGACGTTCACTCCATCACACTTCGTCAT
gi|30 : atatctactCAACCAAAGAACGGTCGTCTCTTTGATGTTCACTCCATCACGCTTCGTCATC
gi|31 : CAACCAAAGAACAGTCGTCTCTTTGATGTTCACTCCATCACGCTTCGTCATC
gi|32 : CAACCGAAGAACAGTCGTCTCTTTGAAGTTCACTCCATCAAGCTTCGTCAT
gi|33 : CAACCAAAGAGCAGTCGTCTCTTTGATGTTCACTCCAACACGCTTCGTCATt
gi|34 : GT--GACAA----------TTTCG--------AGG---TAGTGACA--A-CTTGGAAGTTTCTCAAGGGAATGCC
gi|35 : CACTCACGTATAT-TG--CGCATCTGTGTATATCGCGCATCCATGtt
gi|4 : cgtattACTCACGTAT-T-AGA-CGCATTCGTGTATATCGCGCATCTATGTTTTA-GACC--AAGAACT--ACGGTAAGAAAA-AA-A-TACAATTCTCCTATATATGTGTA---TAGA---G--CGCATC-ATA---AGT--GACAC----------TTTCG--------CAG---TAGTGACA--A-TTTTGAAGTTTCTCAAGAGAATGCCATTAATTT--TTT--TAAT--CTAC----G-TTTTATACACACTCAAAATACTTGACACTTCGTATCACTGTCTCAATACATAC-----TC-AGTGTTTTCAAAACCTGTCAAGGCATGCAATTAAGATGTCAACTAACATG-C--AGAAG--CCACATCGCAGCAACCGCTTCCAATACTCCTAAATGACCGGTGACACATGTACA--CA-G------------TCATG-------T---------TGTT--TTTTT--T----TAAAAC---AT--T--ATA-ACA-T-TTTT-TTTTAGAT--CATAACGAAATACCGCAT-ATTATATTGATTTTATTTTATAAACATAAACTAC-TACAAACT--GCACAAACAAAAGATAC------TGGGTGTCGTTTAAAAATGACTG-ATTTTCAACCAAAGAACAGTCGTCTCTTTGACATTCACTCCATCACGCTTCGTCAT
gi|5 : gtatctCTCACATATAT-TG--CGCATCCGCGTATATCGCGCATCCATGTTTTAAGATC--AAGAACT--A-----AGAAAA-AA-A-TACAATTCTCCTATATATGTGTA---TATC---G--CACATC-ATA---ATTTTGAAATCTCGTTTAGATTTGG--------CTG---TGGCGACA--T-GTTGGAAG----------GAATACC--TGACTTGATATGATAGTTCCCAA----GATTTTATACACACTCAAAATACTTGACACTTCTCATCACTGTCTCAATACATAC-----TC-AGAGTTGTCAACACCTGCTCAGGTGTGCAATTAAGATGTCAACTAATATG-C--AGAAG--CCACATGGCAGCACCCGCTTTCAATACTCCGAAATGACCGGTGACGCTCATACA--CA-G------------TC--A-------TG--------T-TT--TTTTT--TATAAAAAAAT---CT--T--ACA---A-T-TTTT-TTTTA-AT--CATAACGAAATACCGCAT-ATTATATTGA-TTTAATTTATAAACATAAACTAC-TACAAACT--GCACAAACAAAAGATAC------TGGGTGTTGTTTAAAAATGATTG-ATTTTCAACCAAAAAACAGTCGTCTTTTTGACGTTCACTCCATCACACTTCGTCATCt
gi|6 : atcACTCACGTAT-T-AGA-CGCATTCGTGTATATCGCGCATCCATGTTTTAAGACC--AAGAACT--G-----AGGAAA-AA-A-TACAATTCTCCTATATATGTGTA---TAAA---G--CGCATC-ATA---AGT--GACAA----------TTTTG--------AGG---TAGTGACA--A-TTTTGAAGTTTCTCTAGAGAATGCCGTAATTTT--TTT--TAAT--CTAC----G-TTTTATACACACTCAAAATACATGACACTTCTCATCACTGTCTCAATACATAC-----TCAAGAGTTGTGAACACCTGCTCAGGCATGTAATTAAGATGTCAACTAATATG-C--AGAAG--CCACATGGCAGCACCCGCTTTCAATACTCTGAAATGACCAGTGACACTCGT--A--CA-G------------TCATG-------T---------T-TTGCTTTTT--TA---AAAAAT---CT--T--ACA-ATATT-TTTT-TTTTA-AT--CATAACTAAATACCGCATAATTATATTGATTTTATTTTATAAACATAAACTAC-TACAAACT--GCACAAACAAAAGAAAC------TGGGTGTCGTAAAAAAATGATTG-ATTTTCAACCAAAGAACAGTCGTCTCTTTCACGTTCACTCCATCACGCTTCGTCAT
gi|7 : gtatctATTTACGTAAAGATA--CACATTCGTGTATATTGCACATCCATGTTTTAAGACC--AAGAACT--G-----AGAAAAAAA-A-TACAATTCTCCTATATATGTGTA---TAAA---G--CGCATC-ATA---AGA--GACAA----------TTTCG--------TGG---TAGTGACA--A-TTTTGATGTTTCTTAAGAGAATGCCGTTAATTT--TTT--TAAT--CTAC----G-TTTTATACACCTTTAAAATACATGACACTTCTCATCACTGTCTCAAAACATTC-----TC-AGAGTTGTGAACACCTGCTCAGGCGTGTAATTAAGATGTCAACTAATATG-C--AGAAG--CCACATGGCAGCACCCGCTTTCAATACTCTGAAATGACCAGTGACACTCGTACA--CA-G------------TC--ATGTTTTTT---------T-TT--TTTTT--T----TTAAAT---CT--G--ACA-AGA-T-TTTT-TTTTA-AT--CATAACAAAATACTGCAT-ATTATATTGATTTTATTTTATAAACATAAACTAC-TACAAACC--ACACAAACAAAAGATAC------TGGGTGTCGTTTAAAAATGATTG-ATTTTCAACCAAAGAGCAGTCGTCTCTTTGACGTTCACTCCATCACACCTTGTCATC
gi|8 : aACCCACGTATTA-TA--CGCATTTGTGTATATCGCGCATCCATGTTTTAAGACC--AAGAGCT--A-----AGAAAAAAA-A-TACAATTCTCCTATATATGTGTA---TAGA---G--CGCATC-ATG---AGT--GACAC----------TTTCG--------CGG---TAGTGACA--A-TTGTGAAGTTTCTCAACAGAATGCCGTTAATTT--TTT--TAAT--CTAA----G-TTTTATACACACTCAAAATACTTGACACTTCGCATCACTGTCTCAATACATAC-----TC-AGTGTTGTCAACACCTGCCCAAGCGTGCAATTAAGATGTCAACTGATATG-C--AGAAG--CCACATGGCAGCACCCGCTTTCAATACTCAAAAATGACCGGTGACACTCGTACA--CA-G------------TC--A-------TGTTTTGTTGT-TT--TTTTT--T----AAAAA----AT--T--ACA-ATA-T-TTTTATTTTA-AT--CATA-------ACCTTAT-ATTATATTGATTTTATTTTATAAACATAAACAAC-TACAAACC--GCACAAAC-AAAGATAC------TGGGTGTCGTTTATAAATGATTG-ATTTTCAACCAAAGAACAGTCGTCTCTTTGACGTTCACTCCATCACGCTTCGTCATC
gi|9 : cgtatctCACTCACATATAT-TG--CGCATCTGTGTATATCATGCATCCATGTTTTAAGATC--AAGAACT--A-----AGAAAA-AA-A-TACAATTCTCCTATATATGTGTA---TATA---G--CGCATC-ATA---AGT--GACAC----------TTTCG--------CGG---TAATGACA--A-TTTTGAAGTTTCTCAAGAGAATGCCGTTAATTT--TTT--TAAT--CTAC----G-TTTTATACACACTTAAAATACTTGACACTTCGCATCACTGTCTCAATACATAC-----TC-AGAGTTGTCAACACCTGCCCAGGCGTGCAATTAAGATGTCAACTAATATG-C--AGAAG--CCACATGGCAGCACCCGCTTTCAATACTCCGAAATGACCGGTGAT-CTCGTACA--CA-G------------TC--G-------T---------T-TT--TTTTT--T----AAAAAT---CT--T--ACA-ATA-T-TTTT-TTTTA-AT--CACAA-GAAATACCGCAT-ATTATATTGATTTTATTTTATAAACATAAATTAC-TACAAACC--GCACAAACAAAAGATAC------TGGGTGTCGTTTAAAAATGATTG-ACTTTCAACCAAAGAACAGTCGTCTCTTTGACGTTCACTCCATCACGCTTCGTCATC
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): AACGTGATAGGCTACAATGGAAATTAGAAGTAAACACCAAACAACTCGATATTTCTTGATTTATTTGACAAGATTTTTACTGCATACGTAATGAATATAAACTGAATTTGAATAAAAGTTTCTCAGCGAGGTAAGTCATCATCTATAATCAACCTTGTTACCTTCCATTAAGAAATTGTCCTGAAATTAACATCTAAACATACCAGTCTCCAAAACATGCCCGAAAAATCATAAATCGTCAAGTATGACCAAGTTCTGAAAACCTGAAGAAGAAATCCAATGATCTTGGACATATAACCTTGAAAAAAAAATGAAAATGTCTTTACTTGTGTATAGACTTGTTAGAAAAAACATGCACACTATACGCAAGTAAAAACCAGTAGTTAT
Unaligned ( gi|20 ): ATTTACTGCATATACATGGACTATGGAGTGATTTGAATAAAAGGTTCTCCTTCAGGTGGATCCTTGTCTATAATCGACCGCCCATACAGAAATTGTCCTAAAATTAATTAACCAGTCACCAAAACATGTCTCGTTGATCTTTAACCAGTTATCTTGAAAGAAAAAGTGAAATCTTTACCCGTGTATAATGCACATCCCTTCTTTAAGATCTTAAAAGTTGGATATAAATATGCACATTACATTTGAATAGAAATGGTAATGAGTGTTTTAGATGGAAATATGAAATCAAAATACTTACTATGTATGAAAATCTACTTACTATGNNNNNNNNNNATGAAAATCTACTTACTATGTATGA
Unaligned ( gi|21 ): GTTGTGAATCAGAGCAGAAATTTTTAATCGAAGTTTAAATGATTGTTTAACGATTATAATCAGTATCAATTTATAACAGGTGTTCAATATATAATAACCTGAAATGGTTCCAGTGTCTGATTTTGAGTTTTTCCTGGAAAGAGAATAGTCATTTGTCTTTGCCAGTCTTGTTTGTAAGTTGGTCTGGATGGGTTTGATTACCTGCTTGACTTACTTTTCATCTAAACAGCGTTCATTTTATTTACAACTCTTACACAATACATGTAATAAGTATAGTTTGATGACAAACTGAAACAAAAATCCATCATCAGTGATTGTGCCTGTTTGGTAACAATTTGGAGATTAAT
Unaligned ( gi|22 ): TCTTGTTGGTAAGTTGGCCTAGGCGTGTTAGATTTGCTGCCTGCCTTAATTTTTGTCCAATCATTTATATATAGTGTTCAAATCATTTATAAGAAAATATGACAACACTTACACAGAAGTTAGTACAATTCATTGATGAACAAAAATCCATCATTGATGATGGCAGTGCTGGTGGCATTTGGCAAAAATTCTAAGGTAAATTGATTAAT
Unaligned ( gi|25 ): TTGGAAATTGGAGCTGAACTCTTTAATTTCTTAATCTGATTTTTCAAACAATGAAATTCTATAATATTCAAAAACTCAAAATGGTTCCAAATGTCTGATTTCTCCCAGGGAAAGAGTCATTTATCTTTATCAGCCATGTTGGCTAAATTGG
Alignments
lowQualScore : 1111111 11111111111 1 111111111111 22222222222222222222 1111
lowQualScore : 5555555 88 77777777 5 1 1 333 33333 22 2 333 66 22222222222 88888888 444 33 2 1 77 77 33 5555 2 1 55555 2 2 33 33 4 33 2 333333333333 77777777777777777777 2 33 33 5555 444 33 33 66666 5 2 2 33 2 1 2 33 666666 2
lowQualScore : ....... .. ........ . . . ... ..... .. . ... .. ........... ........ ... .. . . .. .. .. .... . . ..... . . .. .. . .. . ............ .................... . .. .. .... ... .. .. ..... . . . .. . . . .. ...... .
lowQualScore : 7777777 22 00000000 2 7 7 555 99999 88 0 999 11 11111111111 55555555 111 22 4 1 33 33 77 7777 5 8 99999 4 5 44 44 1 77 7 777777777777 44444444444444444444 7 77 77 7777 444 44 44 11111 0 4 2 11 1 3 2 11 888888 4
consensus : CACTCACGTATAT-TG--CGCATTCGTGTATATCGCGCATCCATGTTTTAAGACC--AAGAACT--A-----AGAAAA-AA-A-TACAATTCTCCTATATATGTGTA---TATA---G--CGCATC-ATA---AGT--GACAN----------TTTCG--------CGG---TAGTGACA--A-TTTTGAAGTTTCTCAAGAGAATGCCGTTAATTT--TTT--TAAT--CTAC----G-TTTTATACACACTCAAAATACTTGACACTTCGCATCACTGTCTCAATACATAC-----TC-AGAGTTGTCAACACCTGCCCAGGCGTGCAATTAAGATGTCAACTAATATG-C--AGAAG--CCACATGGCAGCACCCGCTTTCAATACTCCGAAATGACCGGTGACGCTCGTACA--CA-G------------TC--G-------T---------T-TT--TTTTT--T----AAAAAT---CT--T--ACA-ATA-T-TTTT-TTTTA-AT--CATAACGAAATACCGCAT-ATTATATTGATTTTATTTTATAAACATAAACTAC-TACAAACC--GCACAAACAAAAGATAC------TGGGTGTCGTTTAAAAATGATTG-ATTTTCAACCAAAGAACAGTCGTCTCTTTGACGTTCACTCCATCACGCTTCGTCATC
Reference ( family-3789 ) : CACTCACGTATAT-TG--CGCATTCGTGTATATCGCGCATCCATGTTTTAAGACC--AAGAACT--A-----AGAAAA-AA-A-TACAATTCTCCTATATATGTGTA---TATA---G--CGCATC-ATA---AGT--GACAN----------TTTCG--------CGG---TAGTGACA--A-TTTTGAAGTTTCTCAAGAGAATGCCGTTAATTT--TTT--TAAT--CTAC----G-TTTTATACACACTCAAAATACTTGACACTTCGCATCACTGTCTCAATACATAC-----TC-AGAGTTGTCAACACCTGCCCAGGCGTGCAATTAAGATGTCAACTAATATG-C--AGAAG--CCACATGGCAGCACCCGCTTTCAATACTCCGAAATGACCGGTGACGCTCGTACA--CA-G------------TC--G-------T---------T-TT--TTTTT--T----AAAAAT---CT--T--ACA-ATA-T-TTTT-TTTTA-AT--CATAACGAAATACCGCAT-ATTATATTGATTTTATTTTATAAACATAAACTAC-TACAAACC--GCACAAACAAAAGATAC------TGGGTGTCGTTTAAAAATGATTG-ATTTTCAACCAAAGAACAGTCGTCTCTTTGACGTTCACTCCATCACGCTTCGTCATC
gi|1 : AAAG---CT--TGAACA--TA-T-TATA-TATTA-ATATCATAACGAAATACCACAT-ATTATATTGATTTTATTTTATAAACATAAACTAC-TACAAATC--GCACAAACAAAAGATA-------TAGGTGT-------GAATAAATACATTTATGAC--AATAACAGTA------TTG-CATTTATTCCA-CA---TTCGTCA
gi|1 : gtttttatttcataaaatgtttagtatgatttcT--A-----AAAAAA-AA-A-TGAAA-TCTTCTGTACTTATGTA---TATC---G--CGCATC-atacactttcacctttacgtaaaccagtctgtgctattttaaatgttatttctggtcacgactaaaataagcagtaaacactttcttatttttttatttatttgacacgttttactgcatatataatgtataaggactgaatttgaaaaaaacattctccgctaggtaaatcatcacctaaaatcgagctcacatgaagaaattttcctgaaattaatatctgaacatactggtgtacaaaacttttcctgaatcgataaatctttgaaaattttacataaaaaaaaaatgaaatcttctgtacttatgtatatcgcgcatcccttctcgaagatcttaaaagttggaaaaaaacgtgcatagtacgtgaggataaacggtaggttcatagtgttatagaactatgaaccacacatttctggcatagaaaataaatattaagaaatcaataaatctattttattattgtaatgacagtattattctgatattaggtat
gi|1 : gtttttatttcataaaatgtttagtatgatttcaaagcttgaacatattatatattaatatcataacgaaataccacatattatattgattttattttataaacataaactactacaaatcgcacaaacaaaagatataggtgtgaataaatacatttatgacaataacagtattgcatttattccacattcgtcaatacactttcacctttacgtaaaccagtctgtgctattttaaatgttatttctggtcacgactaaaataagcagtaaacactttcttatttttttatttatttgacacgttttactgcatatataatgtataaggactgaatttgaaaaaaacattctccgctaggtaaatcatcacctaaaatcgagctcacatgaagaaattttcctgaaattaatatctgaacatactggtgtacaaaacttttcctgaatcgataaatctttgaaaattttacaGTACTTATGTATATCGCGCATCCCTTCTCGAAGATCTTAAAAGTT--------GGAAAA-AA-A-ccttctcgaagatcttaaaagttggaaaaaaacgtgcatagtacgtgaggataaacggtaggttcatagtgttatagaactatgaaccacacatttctggcatagaaaataaatattaagaaatcaataaatctattttattattgtaatgacagtattattctgatattaggtat
gi|10 : gtttttatttcataaaatgtttagtatgatttcaaagcttgaacatattatatattaatatcataacgaaataccacatattatattgattttattttataaacataaactactacaaatcgcacaaacaaaagatataggtgtgaataaatacatttatgacaataacagtattgcatttattccacattcgtcaatacactttcacctttacgtaaaccagtctgtgctattttaaatgttatttctggtcacgactaaaataagcagtaaacactttcttatttttttatttatttgacacgttttactgcatatataatgtataaggactgaatttgaaaaaaacattctccgctaggtaaatcatcacctaaaatcgagctcacatgaagaaattttcctgaaattaatatctgaacatactggtgtacaaaacttttcctgaatcgataaatctttgaaaattttacataaaaaaaaaatgaaatcttctCACTCACGTATAT-TG--CACATCTGTGTATATCGCGCATCCATGTTTTAAGATC--AAGAACT--A-----AGAAAA-AA-A-TACAATTCTCCTATATATGTGTA---TATA---G--CGCATC-ATA---AGT--GTCAC----------TTTTG--------CGA---TAGTGACA--A-TTTTGAAGTTTCTCAAGAGAATGCCGTTAATTT--T-T--TAAT--CTAC----G-TTTTATACACACTCAAAATACTTGACACTTCGCATCATTGTCTCAATACATAC-----TC-AGAGTGGTCAACACCTGCCCAGGCGTGCAATTAAGATGTCAACTAATATG-C--AGAAG--CCACATGGCAGCACCCACTTTCAATACTCCGAAATGATCGGTGAT-CTCGTACA--CA-G------------TC--G-------T---------T-GT--TTTTT--T----AAAAAT---CT--T--ACA-A-A-T-TTTT-TTTTT-AT--CATAACGAAATACCGCAT-ATTATATTGA-TTCATTTTATAAACATAAACTTC-TACAAACC--GCACAAACAAAAGATAC------TGGGTGTCGTTTAAAAATGATTG-ACTTTCAACCAAAGAACAGTCGTCTCTTTGACGTTCACTCCATCACGCTTCGTCATcgtgcatagtacgtgaggataaacggtaggttcatagtgttatagaactatgaaccacacatttctggcatagaaaataaatattaagaaatcaataaatctattttattattgtaatgacagtattattctgatattaggtat
gi|11 : ttG--CGCATCCGTGTATATCGCGCATCCATGTTTTAAGATC--AAGAACT--A-----AGAAAA-AA-A-TACAATTCTCCTATATATGTGTA---TATA---G--CGCATC-ATA---AGT--GACAC----------TTTTG--------CGG---TAGTGACA--A-TTTTGAAATTTCTCAAGAGAATGCTGTTAATTT--TTT--TAAT--CTAT----G-TTTTATACACACTATAAATACTTGACACTTCGCATCAATGTCTCAATACATAC-----TC-AGAGTTGTCAACACCTGTCCAGGCATGCAGTTAAGATGTCAACTAATATG-C--AGAAG--TCACATGGCAGCA-CCACTTTTAATACTTCGAAATGACCGGTGAT-CTTGTACG--CA-G------------TCG-G-------G---------G-TT--TTTTT--T----AAAAAT---CT--T--ACA-ATA-TATTTT-TTTTA-AT--CATAACGAAATACCACAT-ATTATATTGATTTTATTTTATAAACATAAACTAC-TACAAACC--GCACAAACAAAAGATAA------TGGGTGTCGTTTTAAAATGATTG-ACTTTCAACCAAAGAACAGTTGTCTCTTTGACATTCACTCCATCACGCTTTGTCATC
gi|12 : CACTCACGTATAT-TG--CGCATCTGTGTATATCGCGCATCCATGTTTTAAGATC--AAGAACT--G-----AGAAAA-AA-A-TACAATTCTCCTATATATGTGTA---TATA---G--CGCATC-ATA---AGT--GACAA----------TTTCG--------CGG---TAGTGACA--A-TTTTG------------------CCGTTAATTT--TTT--TAAT--CTAC----G-TTTTATACACACTCAAAATACTTGACACTTCGCATCACTGTCTCAATACGTAC-----TC-AGAGTTGTCAACACCTGTCCATGCGTGCAATTAAGATGTCAACTAATATG-C--AGAAG--CCACATGGCAGCACCTGCTTTCAATACTCCGAAATGACCGGTGAT-TTCGTACA--CA-G------------TC--A-------T---------T-TT--TTTTT--TA---AAAAAT---CT--T--ACA-AAT-T-TTTT-TTTTA-AT--CATAACGAAATACCCCAT-ATTATATTGA-TTTATTTTATAAACATAAACTAC-TACAAACC--GCACAAACAAAAGATAC------TGGATGTCGTTTAAAAATGGTTG-ACTTTCAACCAAAGAACAGTTGTCTCTTTGACGTTCACTTCATCACGCTTCGTCATC
gi|13 : ttCACTCACCTATAT-TG--CGCATCTGTGTATATCGCGCATCCATGTTTTAAGATC--AAGAACT--A-----AGAAAA-AA-A-TACAATTCTCCTATAAATGTGTA---TATA---G--CGCATC-ATA---AGT--GACAC----------TTTCG--------CGG---TAGTGACA--A-TTTTGAAGTTTCTCAAAAGAATGCCGTTAATTT--TTT--TAAT--CTAC----G-TTTTATACACACTCAAAATACTTGACACTTCGCATCA---------------C-----TC--------TCAATACATACACAG-----------AGTTGTCAAC--ACCTG-CCCAGGCGTGCCACATGGCAGCACCCGCTTTCAATACTCCGAAACGACCGGTGAT-CTCGTATT--CA-G------------TC--G-------T---------T-GT--TTTTT--T----AAAAAT---CT--T--ACA-ATA-T-TTTT-TTTTA-AT--CATAACGAAATACCGCAT-ATTATATTGATTTCATTTTATAAACATAAACTAC-TACAAACC--GCACAAACAAAAGATAC------TGGGTGTCGTTTAAAAATGATTG-ACTTTCAACCAAAGAACAGTCGTCTCTTTGACGTTCACTCCATCACGCTTCGTCATC
gi|14 : gtattAAA-AA-A-TACAATTCTCCTATATATGTGTA---TATC---G--TGCATC-ATA---ATTTTGA-AA----------TCTCGTTAAGATTCGGCTGTGGCGACA--T-GTTGGAAG----------GAATACC--TGACTCGATATGATAAT--TTCCCAAGA-TTTTATACACACTCAAAATACTTGACACTTCTCATCACTGTCTCAATACATAC-----TC-AGAGTTGTCAACACCTGCTCAGGCGTGCAATTAAGATGTCAACTAATATG-C--AGAAG--CCACATGGCAGCACCCGCTTTCAATACTCCGAAATTACCAGTGACGCTCGT--A--CA-G------------TC--A-------TG--------T-TT--TTTTT--TATA-AAAAAT---CT--T--ACA---A-T-TTTT-TTTTA-AT--CATAACGAAATAATGCAT-ATTATATTGA-TTTAATTTATAAACATAAACTAC-TACAAACC--ACACAAACAAAAGATAC------TGGGTGTCGTTTAAAAATGATTG-ATTTTCAACAAAAAAACAGTCGTCTTTTTGATGTTCACTCCATCACGCTTCGTCATC
gi|15 : catttattaaaaatcagtagatttgACTCACGTATCA-GA--CGCATTGATGTATATCGCGCATCCATGTTTTAAGACC--AAGAACT--A-----AGAAAA-AA-A-ACCAATTCTCCTATATAAGTGTA---TAGA---G--TGCATC-ATA---AG----------------------------------------TGACA--A-TTT----------CAAGGTAGTGAC---AATTT--TG----AA-----------G-TTT--------CTCAAGAGAAT-GCCG-TTCTCATCACTGTCTCAATACATAC-----TC-AGAGTTGTAAACTCCTGCCCAAGCATGCAATTAAAATGTCAACTAATATGAC--A-AAG--CCACATGGCAACACCCGCTTTCAATACTCCGAAATGACCGGTAATG-TCGTACA--CA-G------------TC--A-------TG--------T-TT--TTTTT--T----AAAAAT---CT--T--ACA-ATATT-TTTT-TTTTA-AT--CATAATGAAATACCACAT-ATTATATTGATTTT-TTTTATAAACATAAACAAC-TACAAACC--AAACAAACAAAAAGTAC------AGGGTGTTGTTTAAAAATGATTG-ATTTTCAACCAAAGAACAGTTGTCTCTTTGACGTTCACTCCATAACGCTTTGTCAT
gi|16 : tctACTCATGTAT-T-AGA-CGCATTCATGTATATCGCACATCCATGTTTTAAGACC--AAGAACT--A-----AGAAAA-AA-AATACAATTCTCCCATATATGTGTA---TAGA---G--CGCATC-ATATTAAGT--GACAA----------TTGCG--------AGG---TAGTGACA--A-TTTTGAAGTTTCTCAAGAGAATGCCGTTAATTT--TTT--TAAT--CTAC----A-TTTTATACACACTCAAAATACTTGACACTTCGCATCACTGTCTCAATACATAC-----TC-AGAGTTGTCAACACCTGCCCAGGTGTGCAATTAAGATGTCAACTAATATA-C--AGAAG--CCACATGGCAGCACCCGCTTTCTATACTCTGAAAT-ACCGt
gi|16 : tttctGAAATACCGCAT-ATTATATTGATTTTATTTTATAAACATAAACTAC-TACAAACC--ACACAAACAAAAGATAC------TGGGTGTCATTTAAAAATTAATG-ATTTCCAACCAAAAAACAGTCGTCTCTTTGAAGTTCACTCCATCACGCTTCATCATcatattatattgattttattttataaacataaactactacaaaccacacaaacaaaagatactgggtgtcatttaaaaattaatgatttccaaccaaaaaacagtcgtctctttgaagttcactccatcacgcttcatcat
gi|17 : tttctactcatgtattagacgcattcatgtatatcgcacatccatgttttaagaccaagaactaagaaaaaaaatacaattctcccatatatgtgtatagagcgcatcatattaagtgacaattgcgaggtagtgacaattttgaagtttctcaagagaatgccgttaatttttttaatctacattttatacacactcaaaatacttgacacttcgcatcactgtctcaatacatactcagagttgtcaacacctgcccaggtgtgcaattaagatgtcaactaatatacagaagccacatggcagcacccgctttctatactctATT--A-----AAAAAA-AA-A-TGAAAT--TTCTGTACTTATGTA---TATT---G--CGCATC-
gi|17 : acaaatcgcacaaacaaaagatatacatgtgaataaatacattcatgatgataacagtattgcatttattccgcatttgacaatacactttcacctttacgtaaaccagtctgtgctattttaaatgttatatccggtcacgacataaataagcagtaaacactttcttattttttgatttatttgacatgttttactgcatatataatgtataatgactgaatttgaaaaaaacattctccgctaggtaaatcatcacctataatcgagctcacatgaagaaattgtcctgaaattaatatctgaacatacccatgtgcaaaactttttctgaatcgataaatctttgaaaattttacGTACTTATGTATATTGCGCATCCCTTCTCAAAGATCTTAAAAGTT---------GAAAA-AA-A-AAAAACGCGCATA-ATATGTGccttctcaaagatcttaaaagttgaaaaaaaaaaaacgcgcataatatgtgaggataaa
gi|18 : acaaatcgcacaaacaaaagatatacatgtgaataaatacattcatgatgataacagtattgcatttattccgcatttgacaatacactttcacctttacgtaaaccagtctgtgctattttaaatgttatatccggtcacgacataaataagcagtaaacactttcttattttttgatttatttgacatgttttactgcatatataatgtataatgactgaatttgaaaaaaacattctccgctaggtaaatcatcacctataatcgagctcacatgaagaaattgtcctgaaattaatatctgaacatacccatgtgcaaaactttttctgaatcgataaatctttgaaaattttacattaaaaaaaaaatgaaatttctACTCACGTAT-T-AGA-CGCATTCATGTATATCGCGCATCCATGTTTTAAGTCA--AAGAACT--G-----AGAAAA-AAGA-TACAATTCTCCTATATATGTGTA---TAGA---G--CGCATA-ATA---AGT--GACAA----------TTTCG--------AGG---TAGTGACA--A-TTTTGAAGTTTCTCAAGAGAATGCTGTTAATTT--TTT--TAAT--CTAC----G-TTTTATACAAACTCAAAATACTTCACACTTCTCATCACTGTCTCAATACATAC-----GC-AGAGTTGTCAACACCTGCCCAGGCGTGCAATTAAGATATCAACTAATATG-T--AGAAG--CCATATGGCAGCACCCGCCTTCAATACTCCGAAATGACCGGTGACACTCGTACAGTCATG------------TT--G-------T---------G-TT--TTTTT--T----AAAAAT---CT--T--ACA-ATT-T-TTTT-TTTTA-AT--CATAACAAAATACCGCAT-ATAATATTGATTTTATTTaggataaa
gi|2 : taactCTCACGTATAT-CG--CGCATCCGTGTATATCACGCATCCATGTTTTAAGATC--AAGAACT--A-----AAAAAA-AA-A-TACAATTCTCCTATATATGTGTA---TATC---A--TGCATC-ATA---A
gi|2 : cagtatatc-TTTTATACACACTCAAAATACTTGACACTTCTCATCACTGTCTCAATACATACCATACTC-AGAGTTGTCAACACATGCCTAGGCATGCAATTAAGATGTCAACTAATATG-C--AGAAG--CCACATGGCAGCACCCGCTTTCAATACTCCGAAATAACCGGTGACACTCGTACA--CA-G------------TC--A-------T---------G-TT--TTTTTAAT----AAAAAAAAACA--T--ACA-AT----TCTT-TTTTA-AT--CATAACGAAATACTGCAT-ATTATATTGATTTTATTTTATAAACATAAACTAC-TACAAACT--GCACAAACAAAAGATAC------TGGGTGCCGTTTAAAAATGATTG-ATTTTCAACCAAAGAACATTTATCTTTTTGACGTTCACTCCATCACGCTTCGTCATCttttgaaatctctttcagattcggctgtggcaacatgttggaaggaatacctgacttgatatgttaaacagaatttgattggtccggaaaaaaaaacagtagactggtactcactaaaaaatattgaatttgttcccaagattttatacacactcaaaatacttgacacttctcatcactgtctcaatacataccatactcagagttgtcaacacatgcctaggcatgcaattaagatgtcaactaatatgcagaagccacatggcagcacccgctttcaatactccgaaataaccggtgacactcgtacacagtcatgtttttttaataaaaaaaaacatacaattcttttttaatcataacgaaatactgcatattatattgattttattttataaacataaactactacaaactgcacaaacaaaagatactgggtgccgtttaaaaatgattgattttcaaccaaagaacatttatctttttgacgttcactccatcacgcttcgtcatc
gi|23 : cagtatatcctcacgtatatcgcgcatccgtgtatatcacgcatccatgttttaagatcaagaactaaaaaaaaaatacaattctcctatatatgtgtatatcatgcatcataattttgaaatctctttcagattcggctgtggcaacatgttggaaggaatacctgacttgatatgttaaacagaatttgattggtccggaaaaaaaaacagtagactggtactcactaaaaaatattgaatttgttcccaagaCTCACGGGCAT-TA--CGCATTTGTGTATAGTGCACATCCATTTTTTTAGACT--GAAATCTCGG-----GGAAAA-GA-A-TA-AA---TCTTGTGTAACTGTA---TA-A---GCACGCATCAATA---TTT--TACAA----------TTTT------------------TGACACCATTTTTGAAATGTCT
gi|24 : catgtgtgT-TTTTA-AT--CATAACAAAATACCGCAT-ATAATATTGATTTTATTTTATAAACATAAACTAC-TACAAACC--GCACAAACAAAAGATACTGGGAGTGGGTGTCGTTTAAAAATTATTG-ATTTTCAACCAAAGAACAGTCGTCTCTTTGACATTCACTCCATCACGCTTCGTCATCatttggctcagtatgtaaattaatccatcttggaaaaaatac
gi|26 : GTACTTATGTATATCGCGCATCCCTTCTCGAAGATCTTAAAAGTT--G-----GAAAAA-AA-A-CGCG-----CCTA-ATACGTG
gi|27 : taatctttcaaaatatacatggaaaattatcagaaaaagaaaatttacattaaaaaaaaaatgaaatcttctACTCACGTAT-T-AGA-CACATTCGTGTATATCGCGCATCCATGTTTTAATACC--AA-NNNN--N-----NNNNNA-GC-A-TAAAGGTGTCTCATA-ATGTGTACAGCATAAAGG--TGTCTC-ATA---AAT--Gagt
gi|28 : gtttgtACACTCCAACTCCTTGACACTTCTCATCACC-TCTCAATGCATAC-----TC-CTAGTTGTCAACACCAGTTCAACTTCTCCATTAAGATtttacagcataaagg
gi|29 : -AT--CACAATGAAATACCACAT-ATTAT-TTAGTC---TTTTATAAACACTAAC-ACGTACAAACCATGCACAAA
gi|3 : CGCATAT-TAGACGCATTCGTGTATATTGTGCATCCATGTTTAAAGACC--AGGAACT--A-----AGAAAAAAA-A-TACAATTCTCCTATATATGTGTA---TAGA---G--CGCATC-ATA---AGT--GACAC----------TTTCG--------CGG---TAGTGACA--A-TTTTGAAGTTTCTCAACAAAATGCCGTTAATTT--TTT--TAAT--CTGC----T-TTTTATACACACTCAAAATACTTGACACTTCGCATCACTGTCTCAATACATAC-----TC-AGTGTTGTCAACACCTGCCCAGGCGTGCAATTAAGATGTCAACTAATATG-C--AGAAG--CCACATGGCAGCACCCGCTTTCAATACTCCAAAATGACCGATGACACTCGTACA--CA-GACATGTTTTTTTTT--G-------T---------T-TG--TTTTT--T----AAATAT----TAAT--ATATATA-TATATT-TTTTA-AT--CATAACGAAATACCGCAT-ATTATATTGATTTTATTTTATAAACATAAACTAC-TACAAACC--ACACAAACAAAAGATAC------TGGGTGTCGTTTAAAAATGGTTG-ATTTTCAACCAAAGAACAGTCGTCTCTTTGACGTTCACTCCATCACACTTCGTCAT
gi|30 : atatctactCAACCAAAGAACGGTCGTCTCTTTGATGTTCACTCCATCACGCTTCGTCATC
gi|31 : CAACCAAAGAACAGTCGTCTCTTTGATGTTCACTCCATCACGCTTCGTCATC
gi|32 : CAACCGAAGAACAGTCGTCTCTTTGAAGTTCACTCCATCAAGCTTCGTCAT
gi|33 : CAACCAAAGAGCAGTCGTCTCTTTGATGTTCACTCCAACACGCTTCGTCATt
gi|34 : GT--GACAA----------TTTCG--------AGG---TAGTGACA--A-CTTGGAAGTTTCTCAAGGGAATGCC
gi|35 : CACTCACGTATAT-TG--CGCATCTGTGTATATCGCGCATCCATGtt
gi|4 : cgtattACTCACGTAT-T-AGA-CGCATTCGTGTATATCGCGCATCTATGTTTTA-GACC--AAGAACT--ACGGTAAGAAAA-AA-A-TACAATTCTCCTATATATGTGTA---TAGA---G--CGCATC-ATA---AGT--GACAC----------TTTCG--------CAG---TAGTGACA--A-TTTTGAAGTTTCTCAAGAGAATGCCATTAATTT--TTT--TAAT--CTAC----G-TTTTATACACACTCAAAATACTTGACACTTCGTATCACTGTCTCAATACATAC-----TC-AGTGTTTTCAAAACCTGTCAAGGCATGCAATTAAGATGTCAACTAACATG-C--AGAAG--CCACATCGCAGCAACCGCTTCCAATACTCCTAAATGACCGGTGACACATGTACA--CA-G------------TCATG-------T---------TGTT--TTTTT--T----TAAAAC---AT--T--ATA-ACA-T-TTTT-TTTTAGAT--CATAACGAAATACCGCAT-ATTATATTGATTTTATTTTATAAACATAAACTAC-TACAAACT--GCACAAACAAAAGATAC------TGGGTGTCGTTTAAAAATGACTG-ATTTTCAACCAAAGAACAGTCGTCTCTTTGACATTCACTCCATCACGCTTCGTCAT
gi|5 : gtatctCTCACATATAT-TG--CGCATCCGCGTATATCGCGCATCCATGTTTTAAGATC--AAGAACT--A-----AGAAAA-AA-A-TACAATTCTCCTATATATGTGTA---TATC---G--CACATC-ATA---ATTTTGAAATCTCGTTTAGATTTGG--------CTG---TGGCGACA--T-GTTGGAAG----------GAATACC--TGACTTGATATGATAGTTCCCAA----GATTTTATACACACTCAAAATACTTGACACTTCTCATCACTGTCTCAATACATAC-----TC-AGAGTTGTCAACACCTGCTCAGGTGTGCAATTAAGATGTCAACTAATATG-C--AGAAG--CCACATGGCAGCACCCGCTTTCAATACTCCGAAATGACCGGTGACGCTCATACA--CA-G------------TC--A-------TG--------T-TT--TTTTT--TATAAAAAAAT---CT--T--ACA---A-T-TTTT-TTTTA-AT--CATAACGAAATACCGCAT-ATTATATTGA-TTTAATTTATAAACATAAACTAC-TACAAACT--GCACAAACAAAAGATAC------TGGGTGTTGTTTAAAAATGATTG-ATTTTCAACCAAAAAACAGTCGTCTTTTTGACGTTCACTCCATCACACTTCGTCATCt
gi|6 : atcACTCACGTAT-T-AGA-CGCATTCGTGTATATCGCGCATCCATGTTTTAAGACC--AAGAACT--G-----AGGAAA-AA-A-TACAATTCTCCTATATATGTGTA---TAAA---G--CGCATC-ATA---AGT--GACAA----------TTTTG--------AGG---TAGTGACA--A-TTTTGAAGTTTCTCTAGAGAATGCCGTAATTTT--TTT--TAAT--CTAC----G-TTTTATACACACTCAAAATACATGACACTTCTCATCACTGTCTCAATACATAC-----TCAAGAGTTGTGAACACCTGCTCAGGCATGTAATTAAGATGTCAACTAATATG-C--AGAAG--CCACATGGCAGCACCCGCTTTCAATACTCTGAAATGACCAGTGACACTCGT--A--CA-G------------TCATG-------T---------T-TTGCTTTTT--TA---AAAAAT---CT--T--ACA-ATATT-TTTT-TTTTA-AT--CATAACTAAATACCGCATAATTATATTGATTTTATTTTATAAACATAAACTAC-TACAAACT--GCACAAACAAAAGAAAC------TGGGTGTCGTAAAAAAATGATTG-ATTTTCAACCAAAGAACAGTCGTCTCTTTCACGTTCACTCCATCACGCTTCGTCAT
gi|7 : gtatctATTTACGTAAAGATA--CACATTCGTGTATATTGCACATCCATGTTTTAAGACC--AAGAACT--G-----AGAAAAAAA-A-TACAATTCTCCTATATATGTGTA---TAAA---G--CGCATC-ATA---AGA--GACAA----------TTTCG--------TGG---TAGTGACA--A-TTTTGATGTTTCTTAAGAGAATGCCGTTAATTT--TTT--TAAT--CTAC----G-TTTTATACACCTTTAAAATACATGACACTTCTCATCACTGTCTCAAAACATTC-----TC-AGAGTTGTGAACACCTGCTCAGGCGTGTAATTAAGATGTCAACTAATATG-C--AGAAG--CCACATGGCAGCACCCGCTTTCAATACTCTGAAATGACCAGTGACACTCGTACA--CA-G------------TC--ATGTTTTTT---------T-TT--TTTTT--T----TTAAAT---CT--G--ACA-AGA-T-TTTT-TTTTA-AT--CATAACAAAATACTGCAT-ATTATATTGATTTTATTTTATAAACATAAACTAC-TACAAACC--ACACAAACAAAAGATAC------TGGGTGTCGTTTAAAAATGATTG-ATTTTCAACCAAAGAGCAGTCGTCTCTTTGACGTTCACTCCATCACACCTTGTCATC
gi|8 : aACCCACGTATTA-TA--CGCATTTGTGTATATCGCGCATCCATGTTTTAAGACC--AAGAGCT--A-----AGAAAAAAA-A-TACAATTCTCCTATATATGTGTA---TAGA---G--CGCATC-ATG---AGT--GACAC----------TTTCG--------CGG---TAGTGACA--A-TTGTGAAGTTTCTCAACAGAATGCCGTTAATTT--TTT--TAAT--CTAA----G-TTTTATACACACTCAAAATACTTGACACTTCGCATCACTGTCTCAATACATAC-----TC-AGTGTTGTCAACACCTGCCCAAGCGTGCAATTAAGATGTCAACTGATATG-C--AGAAG--CCACATGGCAGCACCCGCTTTCAATACTCAAAAATGACCGGTGACACTCGTACA--CA-G------------TC--A-------TGTTTTGTTGT-TT--TTTTT--T----AAAAA----AT--T--ACA-ATA-T-TTTTATTTTA-AT--CATA-------ACCTTAT-ATTATATTGATTTTATTTTATAAACATAAACAAC-TACAAACC--GCACAAAC-AAAGATAC------TGGGTGTCGTTTATAAATGATTG-ATTTTCAACCAAAGAACAGTCGTCTCTTTGACGTTCACTCCATCACGCTTCGTCATC
gi|9 : cgtatctCACTCACATATAT-TG--CGCATCTGTGTATATCATGCATCCATGTTTTAAGATC--AAGAACT--A-----AGAAAA-AA-A-TACAATTCTCCTATATATGTGTA---TATA---G--CGCATC-ATA---AGT--GACAC----------TTTCG--------CGG---TAATGACA--A-TTTTGAAGTTTCTCAAGAGAATGCCGTTAATTT--TTT--TAAT--CTAC----G-TTTTATACACACTTAAAATACTTGACACTTCGCATCACTGTCTCAATACATAC-----TC-AGAGTTGTCAACACCTGCCCAGGCGTGCAATTAAGATGTCAACTAATATG-C--AGAAG--CCACATGGCAGCACCCGCTTTCAATACTCCGAAATGACCGGTGAT-CTCGTACA--CA-G------------TC--G-------T---------T-TT--TTTTT--T----AAAAAT---CT--T--ACA-ATA-T-TTTT-TTTTA-AT--CACAA-GAAATACCGCAT-ATTATATTGATTTTATTTTATAAACATAAATTAC-TACAAACC--GCACAAACAAAAGATAC------TGGGTGTCGTTTAAAAATGATTG-ACTTTCAACCAAAGAACAGTCGTCTCTTTGACGTTCACTCCATCACGCTTCGTCATC
blockSeqs : ATTAGA TT ACGGTA A G A CAG TAAAG CA A TTA TT TCTCGTTTAGA TTAAGATT CTG CC T G GA GA TC CAAG A G CATAC A A CC TG G GT T ACATGTTTTTTT ATGTTTTGTTG G GC AA ATAA AAA AA . ATAT A A G . A T G AT TGGGAG .
blockSeqs : AGATA TT CGG A . . . TA . . . TT C . . . . G GA GA . . . G . . . . . G . . . ATGTTTTTT . . . ATA . . . TATA A . . . . T . . . .
blockSeqs : ATTG . A A . . . TA . . . . A . . . . G . . . . . G . . . . . A . . . ATGT . . . A . . . ATAT . . . . . T . . . .
blockSeqs : ATTG . A . . . . TA . . . . C . . . . G . . . . . T . . . . . A . . . ATGT . . . A . . . ATA . . . . . T . . . .
blockSeqs : CAGA . G . . . . TA . . . . A . . . . G . . . . . T . . . . . A . . . GGG . . . . . . . AAT . . . . . T . . . .
blockSeqs : TAGA . A . . . . TC . . . . A . . . . G . . . . . G . . . . . A . . . ATG . . . . . . . ATA . . . . . T . . . .
blockSeqs : TAGA . A . . . . GA . . . . A . . . . A . . . . . T . . . . . G . . . ATG . . . . . . . ATT . . . . . T . . . .
blockSeqs : ATCG . A . . . . GA . . . . A . . . . G . . . . . T . . . . . A . . . ATG . . . . . . . ACA . . . . . T . . . .
blockSeqs : ATTA . A . . . . TT . . . . C . . . . G . . . . . T . . . . . A . . . AT . . . . . . . AGA . . . . . T . . . .
blockSeqs : TAGA . G . . . . GA . . . . A . . . . G . . . . . G . . . . . A . . . GT . . . . . . . ATA . . . . . T . . . .
blockSeqs : ATTG . A . . . . TC . . . . C . . . . G . . . . . G . . . . . . . . . GT . . . . . . . ATA . . . . . T . . . .
blockSeqs : TAGA . G . . . . GA . . . . A . . . . . . . . . . T . . . . . . . . . AT . . . . . . . AA . . . . . T . . . .
blockSeqs : ATTG . N . . . . GA . . . . A . . . . . . . . . . T . . . . . . . . . GT . . . . . . . AT . . . . . T . . . .
blockSeqs : TAGA . A . . . . TC . . . . C . . . . . . . . . . T . . . . . . . . . GT . . . . . . . A . . . . . T . . . .
blockSeqs : TATA . A . . . . AA . . . . C . . . . . G . . . . . . . . A . . . . . . . . . .
blockSeqs : ATTG . G . . . . AA . . . . . . . . . G . . . . . . . . . . .
blockSeqs : . G . . . . GA . . . . . . . . . .
blockSeqs : . A . . . . TA . . . .
blockSeqs : . A . . . . A . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . .
blockSeqCons : ** ** ATA** **
originalCons : CACTCACGTATAT-TG--CGCATTCGTGTATATCGCGCATCCATGTTTTAAGACC--AAGAACT--A-----AGAAAA-AA-A-TACAATTCTCCTATATATGTGTA---TATA---G--CGCATC-ATA---AGT--GACAN----------TTTCG--------CGG---TAGTGACA--A-TTTTGAAGTTTCTCAAGAGAATGCCGTTAATTT--TTT--TAAT--CTAC----G-TTTTATACACACTCAAAATACTTGACACTTCGCATCACTGTCTCAATACATAC-----TC-AGAGTTGTCAACACCTGCCCAGGCGTGCAATTAAGATGTCAACTAATATG-C--AGAAG--CCACATGGCAGCACCCGCTTTCAATACTCCGAAATGACCGGTGACGCTCGTACA--CA-G------------TC--G-------T---------T-TT--TTTTT--T----AAAAAT---CT--T--ACA-ATA-T-TTTT-TTTTA-AT--CATAACGAAATACCGCAT-ATTATATTGATTTTATTTTATAAACATAAACTAC-TACAAACC--GCACAAACAAAAGATAC------TGGGTGTCGTTTAAAAATGATTG-ATTTTCAACCAAAGAACAGTCGTCTCTTTGACGTTCACTCCATCACGCTTCGTCATC
finalCons : CACTCACGTATAT-TG--CGCATTCGTGTATATCGCGCATCCATGTTTTAAGACC--AAGAACT--A-----AGAAAA-AA-A-TACAATTCTCCTATATATGTGTA---TATA---G--CGCATC-ATA---AGT--GACAN----------TTTCG--------CGG---TAGTGACA--A-TTTTGAAGTTTCTCAAGAGAATGCCGTTAATTT--TTT--TAAT--CTAC----G-TTTTATACACACTCAAAATACTTGACACTTCGCATCACTGTCTCAATACATAC-----TC-AGAGTTGTCAACACCTGCCCAGGCGTGCAATTAAGATGTCAACTAATATG-C--AGAAG--CCACATGGCAGCACCCGCTTTCAATACTCCGAAATGACCGGTGACGCTCGTACA--CA-G------------TC--G-------T---------T-TT--TTTTT--T----AAAAAT---CT--T--ACAATA--T-TTTT-TTTTA-AT--CATAACGAAATACCGCAT-ATTATATTGATTTTATTTTATAAACATAAACTAC-TACAAACC--GCACAAACAAAAGATAC------TGGGTGTCGTTTAAAAATGATTG-ATTTTCAACCAAAGAACAGTCGTCTCTTTGACGTTCACTCCATCACGCTTCGTCATC
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): AACGTGATAGGCTACAATGGAAATTAGAAGTAAACACCAAACAACTCGATATTTCTTGATTTATTTGACAAGATTTTTACTGCATACGTAATGAATATAAACTGAATTTGAATAAAAGTTTCTCAGCGAGGTAAGTCATCATCTATAATCAACCTTGTTACCTTCCATTAAGAAATTGTCCTGAAATTAACATCTAAACATACCAGTCTCCAAAACATGCCCGAAAAATCATAAATCGTCAAGTATGACCAAGTTCTGAAAACCTGAAGAAGAAATCCAATGATCTTGGACATATAACCTTGAAAAAAAAATGAAAATGTCTTTACTTGTGTATAGACTTGTTAGAAAAAACATGCACACTATACGCAAGTAAAAACCAGTAGTTAT
Unaligned ( gi|20 ): ATTTACTGCATATACATGGACTATGGAGTGATTTGAATAAAAGGTTCTCCTTCAGGTGGATCCTTGTCTATAATCGACCGCCCATACAGAAATTGTCCTAAAATTAATTAACCAGTCACCAAAACATGTCTCGTTGATCTTTAACCAGTTATCTTGAAAGAAAAAGTGAAATCTTTACCCGTGTATAATGCACATCCCTTCTTTAAGATCTTAAAAGTTGGATATAAATATGCACATTACATTTGAATAGAAATGGTAATGAGTGTTTTAGATGGAAATATGAAATCAAAATACTTACTATGTATGAAAATCTACTTACTATGNNNNNNNNNNATGAAAATCTACTTACTATGTATGA
Unaligned ( gi|21 ): GTTGTGAATCAGAGCAGAAATTTTTAATCGAAGTTTAAATGATTGTTTAACGATTATAATCAGTATCAATTTATAACAGGTGTTCAATATATAATAACCTGAAATGGTTCCAGTGTCTGATTTTGAGTTTTTCCTGGAAAGAGAATAGTCATTTGTCTTTGCCAGTCTTGTTTGTAAGTTGGTCTGGATGGGTTTGATTACCTGCTTGACTTACTTTTCATCTAAACAGCGTTCATTTTATTTACAACTCTTACACAATACATGTAATAAGTATAGTTTGATGACAAACTGAAACAAAAATCCATCATCAGTGATTGTGCCTGTTTGGTAACAATTTGGAGATTAAT
Unaligned ( gi|22 ): TCTTGTTGGTAAGTTGGCCTAGGCGTGTTAGATTTGCTGCCTGCCTTAATTTTTGTCCAATCATTTATATATAGTGTTCAAATCATTTATAAGAAAATATGACAACACTTACACAGAAGTTAGTACAATTCATTGATGAACAAAAATCCATCATTGATGATGGCAGTGCTGGTGGCATTTGGCAAAAATTCTAAGGTAAATTGATTAAT
Unaligned ( gi|25 ): TTGGAAATTGGAGCTGAACTCTTTAATTTCTTAATCTGATTTTTCAAACAATGAAATTCTATAATATTCAAAAACTCAAAATGGTTCCAAATGTCTGATTTCTCCCAGGGAAAGAGTCATTTATCTTTATCAGCCATGTTGGCTAAATTGG
Alignments
lowQualScore : 1111111 11111111111 1 111111111111 22222222222222222222 1111
lowQualScore : 5555555 88 77777777 5 1 1 333 33333 22 2 333 66 22222222222 88888888 444 33 2 1 77 77 33 5555 2 1 55555 2 2 33 33 4 33 2 333333333333 77777777777777777777 2 33 33 5555 444 33 33 66666 5 2 2 33 2 1 2 33 666666 2
lowQualScore : ....... .. ........ . . . ... ..... .. . ... .. ........... ........ ... .. . . .. .. .. .... . . ..... . . .. .. . .. . ............ .................... . .. .. .... ... .. .. ..... . . . .. . . . .. ...... .
lowQualScore : 7777777 22 00000000 2 7 7 555 99999 88 0 999 11 11111111111 55555555 111 22 4 1 33 33 77 7777 5 8 99999 4 5 44 44 1 77 7 777777777777 44444444444444444444 7 77 77 7777 444 44 44 11111 0 4 2 11 1 3 2 11 888888 4
consensus : CACTCACGTATAT-TG--CGCATTCGTGTATATCGCGCATCCATGTTTTAAGACC--AAGAACT--A-----AGAAAA-AA-A-TACAATTCTCCTATATATGTGTA---TATA---G--CGCATC-ATA---AGT--GACAN----------TTTCG--------CGG---TAGTGACA--A-TTTTGAAGTTTCTCAAGAGAATGCCGTTAATTT--TTT--TAAT--CTAC----G-TTTTATACACACTCAAAATACTTGACACTTCGCATCACTGTCTCAATACATAC-----TC-AGAGTTGTCAACACCTGCCCAGGCGTGCAATTAAGATGTCAACTAATATG-C--AGAAG--CCACATGGCAGCACCCGCTTTCAATACTCCGAAATGACCGGTGACGCTCGTACA--CA-G------------TC--G-------T---------T-TT--TTTTT--T----AAAAAT---CT--T--ACA-ATA-T-TTTT-TTTTA-AT--CATAACGAAATACCGCAT-ATTATATTGATTTTATTTTATAAACATAAACTAC-TACAAACC--GCACAAACAAAAGATAC------TGGGTGTCGTTTAAAAATGATTG-ATTTTCAACCAAAGAACAGTCGTCTCTTTGACGTTCACTCCATCACGCTTCGTCATC
Reference ( family-3789 ) : CACTCACGTATAT-TG--CGCATTCGTGTATATCGCGCATCCATGTTTTAAGACC--AAGAACT--A-----AGAAAA-AA-A-TACAATTCTCCTATATATGTGTA---TATA---G--CGCATC-ATA---AGT--GACAN----------TTTCG--------CGG---TAGTGACA--A-TTTTGAAGTTTCTCAAGAGAATGCCGTTAATTT--TTT--TAAT--CTAC----G-TTTTATACACACTCAAAATACTTGACACTTCGCATCACTGTCTCAATACATAC-----TC-AGAGTTGTCAACACCTGCCCAGGCGTGCAATTAAGATGTCAACTAATATG-C--AGAAG--CCACATGGCAGCACCCGCTTTCAATACTCCGAAATGACCGGTGACGCTCGTACA--CA-G------------TC--G-------T---------T-TT--TTTTT--T----AAAAAT---CT--T--ACA-ATA-T-TTTT-TTTTA-AT--CATAACGAAATACCGCAT-ATTATATTGATTTTATTTTATAAACATAAACTAC-TACAAACC--GCACAAACAAAAGATAC------TGGGTGTCGTTTAAAAATGATTG-ATTTTCAACCAAAGAACAGTCGTCTCTTTGACGTTCACTCCATCACGCTTCGTCATC
gi|1 : AAAG---CT--TGAACA--TA-T-TATA-TATTA-ATATCATAACGAAATACCACAT-ATTATATTGATTTTATTTTATAAACATAAACTAC-TACAAATC--GCACAAACAAAAGATA-------TAGGTGT-------GAATAAATACATTTATGAC--AATAACAGTA------TTG-CATTTATTCCA-CA---TTCGTCA
gi|1 : gtttttatttcataaaatgtttagtatgatttcT--A-----AAAAAA-AA-A-TGAAA-TCTTCTGTACTTATGTA---TATC---G--CGCATC-atacactttcacctttacgtaaaccagtctgtgctattttaaatgttatttctggtcacgactaaaataagcagtaaacactttcttatttttttatttatttgacacgttttactgcatatataatgtataaggactgaatttgaaaaaaacattctccgctaggtaaatcatcacctaaaatcgagctcacatgaagaaattttcctgaaattaatatctgaacatactggtgtacaaaacttttcctgaatcgataaatctttgaaaattttacataaaaaaaaaatgaaatcttctgtacttatgtatatcgcgcatcccttctcgaagatcttaaaagttggaaaaaaacgtgcatagtacgtgaggataaacggtaggttcatagtgttatagaactatgaaccacacatttctggcatagaaaataaatattaagaaatcaataaatctattttattattgtaatgacagtattattctgatattaggtat
gi|1 : gtttttatttcataaaatgtttagtatgatttcaaagcttgaacatattatatattaatatcataacgaaataccacatattatattgattttattttataaacataaactactacaaatcgcacaaacaaaagatataggtgtgaataaatacatttatgacaataacagtattgcatttattccacattcgtcaatacactttcacctttacgtaaaccagtctgtgctattttaaatgttatttctggtcacgactaaaataagcagtaaacactttcttatttttttatttatttgacacgttttactgcatatataatgtataaggactgaatttgaaaaaaacattctccgctaggtaaatcatcacctaaaatcgagctcacatgaagaaattttcctgaaattaatatctgaacatactggtgtacaaaacttttcctgaatcgataaatctttgaaaattttacaGTACTTATGTATATCGCGCATCCCTTCTCGAAGATCTTAAAAGTT--------GGAAAA-AA-A-ccttctcgaagatcttaaaagttggaaaaaaacgtgcatagtacgtgaggataaacggtaggttcatagtgttatagaactatgaaccacacatttctggcatagaaaataaatattaagaaatcaataaatctattttattattgtaatgacagtattattctgatattaggtat
gi|10 : gtttttatttcataaaatgtttagtatgatttcaaagcttgaacatattatatattaatatcataacgaaataccacatattatattgattttattttataaacataaactactacaaatcgcacaaacaaaagatataggtgtgaataaatacatttatgacaataacagtattgcatttattccacattcgtcaatacactttcacctttacgtaaaccagtctgtgctattttaaatgttatttctggtcacgactaaaataagcagtaaacactttcttatttttttatttatttgacacgttttactgcatatataatgtataaggactgaatttgaaaaaaacattctccgctaggtaaatcatcacctaaaatcgagctcacatgaagaaattttcctgaaattaatatctgaacatactggtgtacaaaacttttcctgaatcgataaatctttgaaaattttacataaaaaaaaaatgaaatcttctCACTCACGTATAT-TG--CACATCTGTGTATATCGCGCATCCATGTTTTAAGATC--AAGAACT--A-----AGAAAA-AA-A-TACAATTCTCCTATATATGTGTA---TATA---G--CGCATC-ATA---AGT--GTCAC----------TTTTG--------CGA---TAGTGACA--A-TTTTGAAGTTTCTCAAGAGAATGCCGTTAATTT--T-T--TAAT--CTAC----G-TTTTATACACACTCAAAATACTTGACACTTCGCATCATTGTCTCAATACATAC-----TC-AGAGTGGTCAACACCTGCCCAGGCGTGCAATTAAGATGTCAACTAATATG-C--AGAAG--CCACATGGCAGCACCCACTTTCAATACTCCGAAATGATCGGTGAT-CTCGTACA--CA-G------------TC--G-------T---------T-GT--TTTTT--T----AAAAAT---CT--T--ACA-A-A-T-TTTT-TTTTT-AT--CATAACGAAATACCGCAT-ATTATATTGA-TTCATTTTATAAACATAAACTTC-TACAAACC--GCACAAACAAAAGATAC------TGGGTGTCGTTTAAAAATGATTG-ACTTTCAACCAAAGAACAGTCGTCTCTTTGACGTTCACTCCATCACGCTTCGTCATcgtgcatagtacgtgaggataaacggtaggttcatagtgttatagaactatgaaccacacatttctggcatagaaaataaatattaagaaatcaataaatctattttattattgtaatgacagtattattctgatattaggtat
gi|11 : ttG--CGCATCCGTGTATATCGCGCATCCATGTTTTAAGATC--AAGAACT--A-----AGAAAA-AA-A-TACAATTCTCCTATATATGTGTA---TATA---G--CGCATC-ATA---AGT--GACAC----------TTTTG--------CGG---TAGTGACA--A-TTTTGAAATTTCTCAAGAGAATGCTGTTAATTT--TTT--TAAT--CTAT----G-TTTTATACACACTATAAATACTTGACACTTCGCATCAATGTCTCAATACATAC-----TC-AGAGTTGTCAACACCTGTCCAGGCATGCAGTTAAGATGTCAACTAATATG-C--AGAAG--TCACATGGCAGCA-CCACTTTTAATACTTCGAAATGACCGGTGAT-CTTGTACG--CA-G------------TCG-G-------G---------G-TT--TTTTT--T----AAAAAT---CT--T--ACA-ATA-TATTTT-TTTTA-AT--CATAACGAAATACCACAT-ATTATATTGATTTTATTTTATAAACATAAACTAC-TACAAACC--GCACAAACAAAAGATAA------TGGGTGTCGTTTTAAAATGATTG-ACTTTCAACCAAAGAACAGTTGTCTCTTTGACATTCACTCCATCACGCTTTGTCATC
gi|12 : CACTCACGTATAT-TG--CGCATCTGTGTATATCGCGCATCCATGTTTTAAGATC--AAGAACT--G-----AGAAAA-AA-A-TACAATTCTCCTATATATGTGTA---TATA---G--CGCATC-ATA---AGT--GACAA----------TTTCG--------CGG---TAGTGACA--A-TTTTG------------------CCGTTAATTT--TTT--TAAT--CTAC----G-TTTTATACACACTCAAAATACTTGACACTTCGCATCACTGTCTCAATACGTAC-----TC-AGAGTTGTCAACACCTGTCCATGCGTGCAATTAAGATGTCAACTAATATG-C--AGAAG--CCACATGGCAGCACCTGCTTTCAATACTCCGAAATGACCGGTGAT-TTCGTACA--CA-G------------TC--A-------T---------T-TT--TTTTT--TA---AAAAAT---CT--T--ACA-AAT-T-TTTT-TTTTA-AT--CATAACGAAATACCCCAT-ATTATATTGA-TTTATTTTATAAACATAAACTAC-TACAAACC--GCACAAACAAAAGATAC------TGGATGTCGTTTAAAAATGGTTG-ACTTTCAACCAAAGAACAGTTGTCTCTTTGACGTTCACTTCATCACGCTTCGTCATC
gi|13 : ttCACTCACCTATAT-TG--CGCATCTGTGTATATCGCGCATCCATGTTTTAAGATC--AAGAACT--A-----AGAAAA-AA-A-TACAATTCTCCTATAAATGTGTA---TATA---G--CGCATC-ATA---AGT--GACAC----------TTTCG--------CGG---TAGTGACA--A-TTTTGAAGTTTCTCAAAAGAATGCCGTTAATTT--TTT--TAAT--CTAC----G-TTTTATACACACTCAAAATACTTGACACTTCGCATCA---------------C-----TC--------TCAATACATACACAG-----------AGTTGTCAAC--ACCTG-CCCAGGCGTGCCACATGGCAGCACCCGCTTTCAATACTCCGAAACGACCGGTGAT-CTCGTATT--CA-G------------TC--G-------T---------T-GT--TTTTT--T----AAAAAT---CT--T--ACA-ATA-T-TTTT-TTTTA-AT--CATAACGAAATACCGCAT-ATTATATTGATTTCATTTTATAAACATAAACTAC-TACAAACC--GCACAAACAAAAGATAC------TGGGTGTCGTTTAAAAATGATTG-ACTTTCAACCAAAGAACAGTCGTCTCTTTGACGTTCACTCCATCACGCTTCGTCATC
gi|14 : gtattAAA-AA-A-TACAATTCTCCTATATATGTGTA---TATC---G--TGCATC-ATA---ATTTTGA-AA----------TCTCGTTAAGATTCGGCTGTGGCGACA--T-GTTGGAAG----------GAATACC--TGACTCGATATGATAAT--TTCCCAAGA-TTTTATACACACTCAAAATACTTGACACTTCTCATCACTGTCTCAATACATAC-----TC-AGAGTTGTCAACACCTGCTCAGGCGTGCAATTAAGATGTCAACTAATATG-C--AGAAG--CCACATGGCAGCACCCGCTTTCAATACTCCGAAATTACCAGTGACGCTCGT--A--CA-G------------TC--A-------TG--------T-TT--TTTTT--TATA-AAAAAT---CT--T--ACA---A-T-TTTT-TTTTA-AT--CATAACGAAATAATGCAT-ATTATATTGA-TTTAATTTATAAACATAAACTAC-TACAAACC--ACACAAACAAAAGATAC------TGGGTGTCGTTTAAAAATGATTG-ATTTTCAACAAAAAAACAGTCGTCTTTTTGATGTTCACTCCATCACGCTTCGTCATC
gi|15 : catttattaaaaatcagtagatttgACTCACGTATCA-GA--CGCATTGATGTATATCGCGCATCCATGTTTTAAGACC--AAGAACT--A-----AGAAAA-AA-A-ACCAATTCTCCTATATAAGTGTA---TAGA---G--TGCATC-ATA---AG----------------------------------------TGACA--A-TTT----------CAAGGTAGTGAC---AATTT--TG----AA-----------G-TTT--------CTCAAGAGAAT-GCCG-TTCTCATCACTGTCTCAATACATAC-----TC-AGAGTTGTAAACTCCTGCCCAAGCATGCAATTAAAATGTCAACTAATATGAC--A-AAG--CCACATGGCAACACCCGCTTTCAATACTCCGAAATGACCGGTAATG-TCGTACA--CA-G------------TC--A-------TG--------T-TT--TTTTT--T----AAAAAT---CT--T--ACA-ATATT-TTTT-TTTTA-AT--CATAATGAAATACCACAT-ATTATATTGATTTT-TTTTATAAACATAAACAAC-TACAAACC--AAACAAACAAAAAGTAC------AGGGTGTTGTTTAAAAATGATTG-ATTTTCAACCAAAGAACAGTTGTCTCTTTGACGTTCACTCCATAACGCTTTGTCAT
gi|16 : tctACTCATGTAT-T-AGA-CGCATTCATGTATATCGCACATCCATGTTTTAAGACC--AAGAACT--A-----AGAAAA-AA-AATACAATTCTCCCATATATGTGTA---TAGA---G--CGCATC-ATATTAAGT--GACAA----------TTGCG--------AGG---TAGTGACA--A-TTTTGAAGTTTCTCAAGAGAATGCCGTTAATTT--TTT--TAAT--CTAC----A-TTTTATACACACTCAAAATACTTGACACTTCGCATCACTGTCTCAATACATAC-----TC-AGAGTTGTCAACACCTGCCCAGGTGTGCAATTAAGATGTCAACTAATATA-C--AGAAG--CCACATGGCAGCACCCGCTTTCTATACTCTGAAAT-ACCGt
gi|16 : tttctGAAATACCGCAT-ATTATATTGATTTTATTTTATAAACATAAACTAC-TACAAACC--ACACAAACAAAAGATAC------TGGGTGTCATTTAAAAATTAATG-ATTTCCAACCAAAAAACAGTCGTCTCTTTGAAGTTCACTCCATCACGCTTCATCATcatattatattgattttattttataaacataaactactacaaaccacacaaacaaaagatactgggtgtcatttaaaaattaatgatttccaaccaaaaaacagtcgtctctttgaagttcactccatcacgcttcatcat
gi|17 : tttctactcatgtattagacgcattcatgtatatcgcacatccatgttttaagaccaagaactaagaaaaaaaatacaattctcccatatatgtgtatagagcgcatcatattaagtgacaattgcgaggtagtgacaattttgaagtttctcaagagaatgccgttaatttttttaatctacattttatacacactcaaaatacttgacacttcgcatcactgtctcaatacatactcagagttgtcaacacctgcccaggtgtgcaattaagatgtcaactaatatacagaagccacatggcagcacccgctttctatactctATT--A-----AAAAAA-AA-A-TGAAAT--TTCTGTACTTATGTA---TATT---G--CGCATC-
gi|17 : acaaatcgcacaaacaaaagatatacatgtgaataaatacattcatgatgataacagtattgcatttattccgcatttgacaatacactttcacctttacgtaaaccagtctgtgctattttaaatgttatatccggtcacgacataaataagcagtaaacactttcttattttttgatttatttgacatgttttactgcatatataatgtataatgactgaatttgaaaaaaacattctccgctaggtaaatcatcacctataatcgagctcacatgaagaaattgtcctgaaattaatatctgaacatacccatgtgcaaaactttttctgaatcgataaatctttgaaaattttacGTACTTATGTATATTGCGCATCCCTTCTCAAAGATCTTAAAAGTT---------GAAAA-AA-A-AAAAACGCGCATA-ATATGTGccttctcaaagatcttaaaagttgaaaaaaaaaaaacgcgcataatatgtgaggataaa
gi|18 : acaaatcgcacaaacaaaagatatacatgtgaataaatacattcatgatgataacagtattgcatttattccgcatttgacaatacactttcacctttacgtaaaccagtctgtgctattttaaatgttatatccggtcacgacataaataagcagtaaacactttcttattttttgatttatttgacatgttttactgcatatataatgtataatgactgaatttgaaaaaaacattctccgctaggtaaatcatcacctataatcgagctcacatgaagaaattgtcctgaaattaatatctgaacatacccatgtgcaaaactttttctgaatcgataaatctttgaaaattttacattaaaaaaaaaatgaaatttctACTCACGTAT-T-AGA-CGCATTCATGTATATCGCGCATCCATGTTTTAAGTCA--AAGAACT--G-----AGAAAA-AAGA-TACAATTCTCCTATATATGTGTA---TAGA---G--CGCATA-ATA---AGT--GACAA----------TTTCG--------AGG---TAGTGACA--A-TTTTGAAGTTTCTCAAGAGAATGCTGTTAATTT--TTT--TAAT--CTAC----G-TTTTATACAAACTCAAAATACTTCACACTTCTCATCACTGTCTCAATACATAC-----GC-AGAGTTGTCAACACCTGCCCAGGCGTGCAATTAAGATATCAACTAATATG-T--AGAAG--CCATATGGCAGCACCCGCCTTCAATACTCCGAAATGACCGGTGACACTCGTACAGTCATG------------TT--G-------T---------G-TT--TTTTT--T----AAAAAT---CT--T--ACA-ATT-T-TTTT-TTTTA-AT--CATAACAAAATACCGCAT-ATAATATTGATTTTATTTaggataaa
gi|2 : taactCTCACGTATAT-CG--CGCATCCGTGTATATCACGCATCCATGTTTTAAGATC--AAGAACT--A-----AAAAAA-AA-A-TACAATTCTCCTATATATGTGTA---TATC---A--TGCATC-ATA---A
gi|2 : cagtatatc-TTTTATACACACTCAAAATACTTGACACTTCTCATCACTGTCTCAATACATACCATACTC-AGAGTTGTCAACACATGCCTAGGCATGCAATTAAGATGTCAACTAATATG-C--AGAAG--CCACATGGCAGCACCCGCTTTCAATACTCCGAAATAACCGGTGACACTCGTACA--CA-G------------TC--A-------T---------G-TT--TTTTTAAT----AAAAAAAAACA--T--ACA-AT----TCTT-TTTTA-AT--CATAACGAAATACTGCAT-ATTATATTGATTTTATTTTATAAACATAAACTAC-TACAAACT--GCACAAACAAAAGATAC------TGGGTGCCGTTTAAAAATGATTG-ATTTTCAACCAAAGAACATTTATCTTTTTGACGTTCACTCCATCACGCTTCGTCATCttttgaaatctctttcagattcggctgtggcaacatgttggaaggaatacctgacttgatatgttaaacagaatttgattggtccggaaaaaaaaacagtagactggtactcactaaaaaatattgaatttgttcccaagattttatacacactcaaaatacttgacacttctcatcactgtctcaatacataccatactcagagttgtcaacacatgcctaggcatgcaattaagatgtcaactaatatgcagaagccacatggcagcacccgctttcaatactccgaaataaccggtgacactcgtacacagtcatgtttttttaataaaaaaaaacatacaattcttttttaatcataacgaaatactgcatattatattgattttattttataaacataaactactacaaactgcacaaacaaaagatactgggtgccgtttaaaaatgattgattttcaaccaaagaacatttatctttttgacgttcactccatcacgcttcgtcatc
gi|23 : cagtatatcctcacgtatatcgcgcatccgtgtatatcacgcatccatgttttaagatcaagaactaaaaaaaaaatacaattctcctatatatgtgtatatcatgcatcataattttgaaatctctttcagattcggctgtggcaacatgttggaaggaatacctgacttgatatgttaaacagaatttgattggtccggaaaaaaaaacagtagactggtactcactaaaaaatattgaatttgttcccaagaCTCACGGGCAT-TA--CGCATTTGTGTATAGTGCACATCCATTTTTTTAGACT--GAAATCTCGG-----GGAAAA-GA-A-TA-AA---TCTTGTGTAACTGTA---TA-A---GCACGCATCAATA---TTT--TACAA----------TTTT------------------TGACACCATTTTTGAAATGTCT
gi|24 : catgtgtgT-TTTTA-AT--CATAACAAAATACCGCAT-ATAATATTGATTTTATTTTATAAACATAAACTAC-TACAAACC--GCACAAACAAAAGATACTGGGAGTGGGTGTCGTTTAAAAATTATTG-ATTTTCAACCAAAGAACAGTCGTCTCTTTGACATTCACTCCATCACGCTTCGTCATCatttggctcagtatgtaaattaatccatcttggaaaaaatac
gi|26 : GTACTTATGTATATCGCGCATCCCTTCTCGAAGATCTTAAAAGTT--G-----GAAAAA-AA-A-CGCG-----CCTA-ATACGTG
gi|27 : taatctttcaaaatatacatggaaaattatcagaaaaagaaaatttacattaaaaaaaaaatgaaatcttctACTCACGTAT-T-AGA-CACATTCGTGTATATCGCGCATCCATGTTTTAATACC--AA-NNNN--N-----NNNNNA-GC-A-TAAAGGTGTCTCATA-ATGTGTACAGCATAAAGG--TGTCTC-ATA---AAT--Gagt
gi|28 : gtttgtACACTCCAACTCCTTGACACTTCTCATCACC-TCTCAATGCATAC-----TC-CTAGTTGTCAACACCAGTTCAACTTCTCCATTAAGATtttacagcataaagg
gi|29 : -AT--CACAATGAAATACCACAT-ATTAT-TTAGTC---TTTTATAAACACTAAC-ACGTACAAACCATGCACAAA
gi|3 : CGCATAT-TAGACGCATTCGTGTATATTGTGCATCCATGTTTAAAGACC--AGGAACT--A-----AGAAAAAAA-A-TACAATTCTCCTATATATGTGTA---TAGA---G--CGCATC-ATA---AGT--GACAC----------TTTCG--------CGG---TAGTGACA--A-TTTTGAAGTTTCTCAACAAAATGCCGTTAATTT--TTT--TAAT--CTGC----T-TTTTATACACACTCAAAATACTTGACACTTCGCATCACTGTCTCAATACATAC-----TC-AGTGTTGTCAACACCTGCCCAGGCGTGCAATTAAGATGTCAACTAATATG-C--AGAAG--CCACATGGCAGCACCCGCTTTCAATACTCCAAAATGACCGATGACACTCGTACA--CA-GACATGTTTTTTTTT--G-------T---------T-TG--TTTTT--T----AAATAT----TAAT--ATATATA-TATATT-TTTTA-AT--CATAACGAAATACCGCAT-ATTATATTGATTTTATTTTATAAACATAAACTAC-TACAAACC--ACACAAACAAAAGATAC------TGGGTGTCGTTTAAAAATGGTTG-ATTTTCAACCAAAGAACAGTCGTCTCTTTGACGTTCACTCCATCACACTTCGTCAT
gi|30 : atatctactCAACCAAAGAACGGTCGTCTCTTTGATGTTCACTCCATCACGCTTCGTCATC
gi|31 : CAACCAAAGAACAGTCGTCTCTTTGATGTTCACTCCATCACGCTTCGTCATC
gi|32 : CAACCGAAGAACAGTCGTCTCTTTGAAGTTCACTCCATCAAGCTTCGTCAT
gi|33 : CAACCAAAGAGCAGTCGTCTCTTTGATGTTCACTCCAACACGCTTCGTCATt
gi|34 : GT--GACAA----------TTTCG--------AGG---TAGTGACA--A-CTTGGAAGTTTCTCAAGGGAATGCC
gi|35 : CACTCACGTATAT-TG--CGCATCTGTGTATATCGCGCATCCATGtt
gi|4 : cgtattACTCACGTAT-T-AGA-CGCATTCGTGTATATCGCGCATCTATGTTTTA-GACC--AAGAACT--ACGGTAAGAAAA-AA-A-TACAATTCTCCTATATATGTGTA---TAGA---G--CGCATC-ATA---AGT--GACAC----------TTTCG--------CAG---TAGTGACA--A-TTTTGAAGTTTCTCAAGAGAATGCCATTAATTT--TTT--TAAT--CTAC----G-TTTTATACACACTCAAAATACTTGACACTTCGTATCACTGTCTCAATACATAC-----TC-AGTGTTTTCAAAACCTGTCAAGGCATGCAATTAAGATGTCAACTAACATG-C--AGAAG--CCACATCGCAGCAACCGCTTCCAATACTCCTAAATGACCGGTGACACATGTACA--CA-G------------TCATG-------T---------TGTT--TTTTT--T----TAAAAC---AT--T--ATA-ACA-T-TTTT-TTTTAGAT--CATAACGAAATACCGCAT-ATTATATTGATTTTATTTTATAAACATAAACTAC-TACAAACT--GCACAAACAAAAGATAC------TGGGTGTCGTTTAAAAATGACTG-ATTTTCAACCAAAGAACAGTCGTCTCTTTGACATTCACTCCATCACGCTTCGTCAT
gi|5 : gtatctCTCACATATAT-TG--CGCATCCGCGTATATCGCGCATCCATGTTTTAAGATC--AAGAACT--A-----AGAAAA-AA-A-TACAATTCTCCTATATATGTGTA---TATC---G--CACATC-ATA---ATTTTGAAATCTCGTTTAGATTTGG--------CTG---TGGCGACA--T-GTTGGAAG----------GAATACC--TGACTTGATATGATAGTTCCCAA----GATTTTATACACACTCAAAATACTTGACACTTCTCATCACTGTCTCAATACATAC-----TC-AGAGTTGTCAACACCTGCTCAGGTGTGCAATTAAGATGTCAACTAATATG-C--AGAAG--CCACATGGCAGCACCCGCTTTCAATACTCCGAAATGACCGGTGACGCTCATACA--CA-G------------TC--A-------TG--------T-TT--TTTTT--TATAAAAAAAT---CT--T--ACA---A-T-TTTT-TTTTA-AT--CATAACGAAATACCGCAT-ATTATATTGA-TTTAATTTATAAACATAAACTAC-TACAAACT--GCACAAACAAAAGATAC------TGGGTGTTGTTTAAAAATGATTG-ATTTTCAACCAAAAAACAGTCGTCTTTTTGACGTTCACTCCATCACACTTCGTCATCt
gi|6 : atcACTCACGTAT-T-AGA-CGCATTCGTGTATATCGCGCATCCATGTTTTAAGACC--AAGAACT--G-----AGGAAA-AA-A-TACAATTCTCCTATATATGTGTA---TAAA---G--CGCATC-ATA---AGT--GACAA----------TTTTG--------AGG---TAGTGACA--A-TTTTGAAGTTTCTCTAGAGAATGCCGTAATTTT--TTT--TAAT--CTAC----G-TTTTATACACACTCAAAATACATGACACTTCTCATCACTGTCTCAATACATAC-----TCAAGAGTTGTGAACACCTGCTCAGGCATGTAATTAAGATGTCAACTAATATG-C--AGAAG--CCACATGGCAGCACCCGCTTTCAATACTCTGAAATGACCAGTGACACTCGT--A--CA-G------------TCATG-------T---------T-TTGCTTTTT--TA---AAAAAT---CT--T--ACA-ATATT-TTTT-TTTTA-AT--CATAACTAAATACCGCATAATTATATTGATTTTATTTTATAAACATAAACTAC-TACAAACT--GCACAAACAAAAGAAAC------TGGGTGTCGTAAAAAAATGATTG-ATTTTCAACCAAAGAACAGTCGTCTCTTTCACGTTCACTCCATCACGCTTCGTCAT
gi|7 : gtatctATTTACGTAAAGATA--CACATTCGTGTATATTGCACATCCATGTTTTAAGACC--AAGAACT--G-----AGAAAAAAA-A-TACAATTCTCCTATATATGTGTA---TAAA---G--CGCATC-ATA---AGA--GACAA----------TTTCG--------TGG---TAGTGACA--A-TTTTGATGTTTCTTAAGAGAATGCCGTTAATTT--TTT--TAAT--CTAC----G-TTTTATACACCTTTAAAATACATGACACTTCTCATCACTGTCTCAAAACATTC-----TC-AGAGTTGTGAACACCTGCTCAGGCGTGTAATTAAGATGTCAACTAATATG-C--AGAAG--CCACATGGCAGCACCCGCTTTCAATACTCTGAAATGACCAGTGACACTCGTACA--CA-G------------TC--ATGTTTTTT---------T-TT--TTTTT--T----TTAAAT---CT--G--ACA-AGA-T-TTTT-TTTTA-AT--CATAACAAAATACTGCAT-ATTATATTGATTTTATTTTATAAACATAAACTAC-TACAAACC--ACACAAACAAAAGATAC------TGGGTGTCGTTTAAAAATGATTG-ATTTTCAACCAAAGAGCAGTCGTCTCTTTGACGTTCACTCCATCACACCTTGTCATC
gi|8 : aACCCACGTATTA-TA--CGCATTTGTGTATATCGCGCATCCATGTTTTAAGACC--AAGAGCT--A-----AGAAAAAAA-A-TACAATTCTCCTATATATGTGTA---TAGA---G--CGCATC-ATG---AGT--GACAC----------TTTCG--------CGG---TAGTGACA--A-TTGTGAAGTTTCTCAACAGAATGCCGTTAATTT--TTT--TAAT--CTAA----G-TTTTATACACACTCAAAATACTTGACACTTCGCATCACTGTCTCAATACATAC-----TC-AGTGTTGTCAACACCTGCCCAAGCGTGCAATTAAGATGTCAACTGATATG-C--AGAAG--CCACATGGCAGCACCCGCTTTCAATACTCAAAAATGACCGGTGACACTCGTACA--CA-G------------TC--A-------TGTTTTGTTGT-TT--TTTTT--T----AAAAA----AT--T--ACA-ATA-T-TTTTATTTTA-AT--CATA-------ACCTTAT-ATTATATTGATTTTATTTTATAAACATAAACAAC-TACAAACC--GCACAAAC-AAAGATAC------TGGGTGTCGTTTATAAATGATTG-ATTTTCAACCAAAGAACAGTCGTCTCTTTGACGTTCACTCCATCACGCTTCGTCATC
gi|9 : cgtatctCACTCACATATAT-TG--CGCATCTGTGTATATCATGCATCCATGTTTTAAGATC--AAGAACT--A-----AGAAAA-AA-A-TACAATTCTCCTATATATGTGTA---TATA---G--CGCATC-ATA---AGT--GACAC----------TTTCG--------CGG---TAATGACA--A-TTTTGAAGTTTCTCAAGAGAATGCCGTTAATTT--TTT--TAAT--CTAC----G-TTTTATACACACTTAAAATACTTGACACTTCGCATCACTGTCTCAATACATAC-----TC-AGAGTTGTCAACACCTGCCCAGGCGTGCAATTAAGATGTCAACTAATATG-C--AGAAG--CCACATGGCAGCACCCGCTTTCAATACTCCGAAATGACCGGTGAT-CTCGTACA--CA-G------------TC--G-------T---------T-TT--TTTTT--T----AAAAAT---CT--T--ACA-ATA-T-TTTT-TTTTA-AT--CACAA-GAAATACCGCAT-ATTATATTGATTTTATTTTATAAACATAAATTAC-TACAAACC--GCACAAACAAAAGATAC------TGGGTGTCGTTTAAAAATGATTG-ACTTTCAACCAAAGAACAGTCGTCTCTTTGACGTTCACTCCATCACGCTTCGTCATC
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): AACGTGATAGGCTACAATGGAAATTAGAAGTAAACACCAAACAACTCGATATTTCTTGATTTATTTGACAAGATTTTTACTGCATACGTAATGAATATAAACTGAATTTGAATAAAAGTTTCTCAGCGAGGTAAGTCATCATCTATAATCAACCTTGTTACCTTCCATTAAGAAATTGTCCTGAAATTAACATCTAAACATACCAGTCTCCAAAACATGCCCGAAAAATCATAAATCGTCAAGTATGACCAAGTTCTGAAAACCTGAAGAAGAAATCCAATGATCTTGGACATATAACCTTGAAAAAAAAATGAAAATGTCTTTACTTGTGTATAGACTTGTTAGAAAAAACATGCACACTATACGCAAGTAAAAACCAGTAGTTAT
Unaligned ( gi|20 ): ATTTACTGCATATACATGGACTATGGAGTGATTTGAATAAAAGGTTCTCCTTCAGGTGGATCCTTGTCTATAATCGACCGCCCATACAGAAATTGTCCTAAAATTAATTAACCAGTCACCAAAACATGTCTCGTTGATCTTTAACCAGTTATCTTGAAAGAAAAAGTGAAATCTTTACCCGTGTATAATGCACATCCCTTCTTTAAGATCTTAAAAGTTGGATATAAATATGCACATTACATTTGAATAGAAATGGTAATGAGTGTTTTAGATGGAAATATGAAATCAAAATACTTACTATGTATGAAAATCTACTTACTATGNNNNNNNNNNATGAAAATCTACTTACTATGTATGA
Unaligned ( gi|21 ): GTTGTGAATCAGAGCAGAAATTTTTAATCGAAGTTTAAATGATTGTTTAACGATTATAATCAGTATCAATTTATAACAGGTGTTCAATATATAATAACCTGAAATGGTTCCAGTGTCTGATTTTGAGTTTTTCCTGGAAAGAGAATAGTCATTTGTCTTTGCCAGTCTTGTTTGTAAGTTGGTCTGGATGGGTTTGATTACCTGCTTGACTTACTTTTCATCTAAACAGCGTTCATTTTATTTACAACTCTTACACAATACATGTAATAAGTATAGTTTGATGACAAACTGAAACAAAAATCCATCATCAGTGATTGTGCCTGTTTGGTAACAATTTGGAGATTAAT
Unaligned ( gi|22 ): TCTTGTTGGTAAGTTGGCCTAGGCGTGTTAGATTTGCTGCCTGCCTTAATTTTTGTCCAATCATTTATATATAGTGTTCAAATCATTTATAAGAAAATATGACAACACTTACACAGAAGTTAGTACAATTCATTGATGAACAAAAATCCATCATTGATGATGGCAGTGCTGGTGGCATTTGGCAAAAATTCTAAGGTAAATTGATTAAT
Unaligned ( gi|25 ): TTGGAAATTGGAGCTGAACTCTTTAATTTCTTAATCTGATTTTTCAAACAATGAAATTCTATAATATTCAAAAACTCAAAATGGTTCCAAATGTCTGATTTCTCCCAGGGAAAGAGTCATTTATCTTTATCAGCCATGTTGGCTAAATTGG