lowQualScore : 2222222222222222222 1111111111111111111111111111111111111111111 1111111111111 1111111111111111111111111111111111111111111111 1111111111
lowQualScore : 4 1 4 555555 33 9999999999999999 2 55 11 11 222 22 1 22 1 4 22 2222 333 6666666666666 2 1 77777777777777 33 4444 2 22 3333333333333333333 1111111111111111111111111111111111111111111 1 1111 1 1 22 1 1111 11 4444444 6666666666666 1 222 333333333333 1 1111 11 11 11111 1111 2222222 444444 22222 0000000000000000000000000000000000000000000000 1 1 111 222 1111 1111 1 333333333333333333 22222 4444444 22 111 11 66666666666 7777777777 333333333 1 1 33 2222 1 1 22 1 1
lowQualScore : 6 0 6 5 6 0 3 777777 2 4 00 2 0000000000000000 0 55 6 22 6 22 6 6 555 6 11 6 7 6 11 7 0 3 22 4 1111 555 2222222222222 7 2 4 5 55555555555555 3 11 6 2222 0 55 8888888888888888888 6 6 6 7777777777777777777777777777777777777777777 2 0 8888 8 0 888 1 99 5 6 7 11 1 1 0 5 5 5 8 7 2222 0 5 33 2 0 44 1 88 7 6 6 4 0000000 4 8 0 3 8 5 7777777777777 6 8 9 4 666 5 6 444444444444 0 3 6 0 7777 6 11 1 4 11 11111 8 0000 0000000 0 5 111111 5 88888 9999999999999999999999999999999999999999999999 0 3 0 6 7 3 111 000 99 4444 1 5 1111 3 6 4 888888888888888888 8 00000 3 1111111 0 11 555 8 8 0 33 0 0 0 88888888888 6 5555555555 6 444444444 6 7 6 1 3 0 22 3 4 9999 6 6 77 7 7 11 5 7
lowQualScore : . . . . . . . ...... . . .. . ................ . .. . .. . .. . . ... . .. . . . .. . . . .. . .... ... ............. . . . . .............. . .. . .... . .. ................... . . . ........................................... . . .... . . ... . .. . . . .. . . . . . . . . .... . . .. . . .. . .. . . . . ....... . . . . . . ............. . . . . ... . . ............ . . . . .... . .. . . .. ..... . .... ....... . . ...... . ..... .............................................. . . . . . . ... ... .. .... . . .... . . . .................. . ..... . ....... . .. ... . . . .. . . . ........... . .......... . ......... . . . . . . .. . . .... . . .. . . .. . .
lowQualScore : 0 0 0 0 0 0 0 555555 5 0 55 5 0000000000000000 0 00 0 00 0 00 0 0 000 0 00 0 0 0 00 0 0 0 00 0 0000 000 0000000000000 5 5 0 5 00000000000000 0 55 0 5555 0 55 0000000000000000000 0 0 0 5555555555555555555555555555555555555555555 5 0 1111 6 1 111 4 44 6 4 0 99 7 3 1 7 9 7 7 3 1111 1 7 00 1 4 99 8 00 8 0 0 8 4444444 8 0 8 0 2 0 6666666666666 7 3 8 8 888 0 5 000000000000 0 0 0 8 0000 2 00 8 8 22 66666 0 6666 9999999 2 0 222222 0 22222 5555555555555555555555555555555555555555555555 0 6 0 7 5 5 777 000 22 2222 0 7 0000 5 7 8 222222222222222222 0 00000 0 5555555 2 55 666 0 0 8 66 8 6 8 66666666666 0 0000000000 0 888888888 0 0 0 0 3 7 55 0 0 5555 0 0 00 0 0 00 0 0
consensus : AATGGTAGTCTTGCTGATATGTCTTTAT-AAATGTAGAAAATAGAAATAAGCAATTATGTCTTAAGCATGTTTTTAAAATTGTAAATGACANGACTTAGTGTNCTNCATTNTGTGGAANAGAATTTAGTTTTTGNTAAAGATGTGCGGCTCTTAT--TCTACTGGGGCAAATTTATATAATTTTAGTGTACCCAAATATCATGGGAAAGAGAATATAACCTTCTTTTACAGTGCAATCAATGATTGGAATACATTGCCTGCTAACATTAAGAAAATTAATAAAATTAGTCACTTTAAAAGTTCTGTCAAGACCAGTTTATTAGACAGAGCTAGGAAAGCATAGTTTATTTGTTGCACTTGTAGACTAAATATACTCATTGTTTTTAATTGTAATATNTTTGTGCNAAATTCGTGGTAANAAGTAAAAATACATTTGTAAACGGCATGTATATCCTGNAANCATTCCATGTGATAACTTCCAAATNCCAAAGTCTTCAACTTTATATTATTTTCGTTTGATTCAATTGNAATTTGT--------------GTAATGTATAGTACCAAGGACTTCATTGGAAATAACCATTCCAGCTTTAATTG-GCAATCGAACGTTAATCAANACANANTTTTA-TGTACGAG---GGACGTTCAAAAATAAATCGG-ATTTTTT-CTCTNATGANATTATTATTTTCCTCAGGATAACAAAACTTACATAAAT-GNAAACC-GCTTTCCATTTTGAAACTTT----CTGAAT-AGTTTNATGCGCAACTAGGATGATACGTCCAAAGCAACGAACGTTCCATTTACCATAGTAACGCATATGCGGCGC-CCGTCGTTTT-ACATTCCTTAAAACGTATTAAAACGCCGTNACAATTGCAA--A-------ATTATGGTTGTC-CAATAGCTTTAA-AATCCGCCAAATTGTAACGTAACGTCATNGTAACATA--A---------CTGCTAAATTTGACGTCATTCGCATTTCAAATAC----AAACGNAAA--CCGCGTTTTC-GAAGACTGTG--ATAGA-GATATTTGCATGGA----AA------TATGGCGTCAT-CGGAAACA-A--A-GTTGATGCAGAAAGTACCGC------------------G--CGA------------------AC-TAGTGTTTAG-GTGGCATAAGAAG-TTTGCCGACGG---ACG--AGA--TTCAT----TGGAAGATGATAAGGGGAGAG-GA---CGAAAGTCGAAAATTAGCAGTGA-C-GT--CG------T--GACGTC-TG-----TTCGAGATGCACTTGATAACGATCGACGATTGACAGTT------AAGGCATTATCCATCAGGATCGGTGT-TAGT-GTGG-GAACAATTTATACAATTCTAACGGAACATTT--AA--TTT-AAAGATGTCCA----------AGGTACACGCA---CGGTGGGTGCCCAGGATTTTGAAGGATAACGAAAAAGAGCGACGTGTGAA-GAATTCTNAAGANATTCCTNAGCGATACAAAAAAGACGGNNATGAATTCCTAGCACACGCATTAAGGAAAAATCGACCAGGGATTCCACTCAAGCATTAC
Reference ( gi|1 ) : AGTGGTAGTCTTGCTGATATGTCTTTATTAAATGTAGAAAATAGAAATAAGCAATCATGTCTTAACCACGTTTTTAAA-TTGTAAATGACAAG------TGTCCTTCAT-GTATGAAAGAAAA----------GATAAAGATGTGC-ACTCTTATATTCTACTAGGGCAAATTTATATAATTTTAGTGTACCCAAATACTATGGGAAAGAGAATGTAATTTTCTTTTACAGTGCAATCAATGATTGGAATGCATTGCCTGCTGACATTAAGAAAATTAATAAAAATTGTCATTTTAAAAGTTCTGTCAAGACCCATTTATTAGACAGAGCTAGGAAAGCATAGTTTATTTATTGCACTTGTTGACTAGATATGGTCAATG-TTTTAATTGTAATATTTTTACTCAAAATTTGTGATAATGA-TAA---TATATTTGTAAACGGCAAATATATTATGGAAACATTCCATGCAGTAACTTCCAAATTCCTAAGTCTTCAACTTTATATTGT----GTTT-ATTTAATTGCAATTTGTAATGTATACTCTTAGTAA-GTATAATACTAAGGACCTCATTGGAAATAAGTCTTTGGGCTTCA--TGAGCA----AATGTT--TT--TACCAACTTTTA-TGTACGAG---TGACGGTCAAAAATAAATCAG-ACTTTTC-CTCTTATGAAATTTTTAATTTCCTCAGGATAATAAAACTTACATAAAT-GTAAACC-GCTTTCCAATTCGAAACTTT----CTGAAT-AGTTTTATGCGCAACTAGGATGATACGTCTAAAGCAACACACGTTCCATTTACCACAGTAATGTATATGCGACAC-CAATCATTTT-ACATTCCTTAAAATGTATTAAAACACCGTGACAATTGCAATTATTTATTTATTATGGTTGTC-CAAAAGCTTTAATAATCTGCTTAATTGTAACATAACGTCATCGTAACATA--A---------CTAGTAAATTTGACGTCATTTGTATTTCAAATAC----AAACGTAAA--CTGTGTTTTC-GAAGACTATG--ATAGA-GATATTTGCATGGA----AA------TATGGCGTCAT-CGGAAA------A-GTTGATGTAGAAAGTACTAC------------------G--CAA------------------AC-TAGTGTTTAG-GTGGCATAAGAAG-TTTGCTGACAG---ACG--TGA--TTCAT----TGGAAGATGATAAGGGGAGAG-GA---TGAAAGTTGAATATTAGCAATGA-A-GT--TG------T--GACGTC-TG-----TTTGAGATGCACTTGATAACGATCGACGATTGACAGTT------CAGGCATTATCCATTTGGATCGGTGT-AAGT-GTGG-GAACAGTTTATACAATTCTAACGGAACATTC--AA--TTTAAAAGATATCCATGAGGTAAAGAGGTACATGCA---CGTTACGTGCCCAGGATTTTGAAGGATAACAAAATAGAGCAACATGTGAA-GGATTCAAAAGAAATTCTTAAGCGATA-AACAAAAACAGTTATGAATTCCTAGCACACGCATAAAGGTAAAAGTGACAAGGGATACCACTCAAGCATTAC
gi|4 : AATGGTAGTCTTGCTGATATGTCTTTAT-AAATGTAGAAAATAGAAATAAGCAATTATGTCTTAAGCATGTTTTTAAAATTGTAAATGACAAGACTTAGTGTCCTTCATTATATGAAAGAAAATTTAGTTTTTGTTAAAGATGTGC-ACTCTTAT--TCTACTGGGGCAAATTTATATAATTTTAGTGTACCCAAATATCATGGGAAAGAGAATATAACCTTCTTTTACAGTGCAATCAATGATTGGAATACATTGCCTGCTAACATTAAGAAAATTAATAAAATTAGTCACTTTAAAAGTTCTGTCAAGACCAGTTTATTAGACAGAGCTAGGAAAGCATAGTTTATTTGTTGCACTTGTAGACTAAATATACTCATTGTTTTTAATTGTAATATTTTTATACAAAATTTATGGTAAAAAGTAA---TACAT-------------GTATATT-TGTAAAC-TTCC--------------AAATTCCAAAGTCTTCAACTTTATATTAT----GTTT-ATTTAATT-TAATT
gi|5 : cttagattttaaaattagaaaaatatttatgttctgctctgatacagtgtcatttagactattcatgttcgtctttgtacccgagtttaaacaaagggttaagatctgtcaaaataaaattgttagattcataattaatgatatgggacctagggaaggtatcaatTAACACG------TGTATTACAT-TTGTGGAATAGAA----------AATA--GATGTGCGGCTCTTATg
gi|8 : ttTTAATTGTAATATGTTTGTGCTAAATTCGTGATAATAA-TAAAAATATATTTGTAAACGGCATATATATCCTGGAATCATTCCATGTGATAACTTCCAAATGCC--AGTCTTCAACTTTATATTATTTTCGTTTGATTCAATTGAAATTTGT--------------GTAATGTATAGTACCAAGGACTTCATTGGAAATAACCATTCCAGCTTTAATTG-GCAATCGAACGTTAATTAATACACACTTTTA-TGTATGAttggttagtatacgagaaatgacgttcaaaaataaatcatattttttcttgtatcatattattatttacttcaggataacaatacttacatcaatgaaaaccgcttttcattttgtttattcactagtagtatgatatgttgaaagcagtgaatgtcccatttgtaatagtaacgcatatccgacatttgtcgtttttgcatgtattaatgtattaatactctatgataattgcatttatggttgtcactaacttaaaaaaatgtgagttaacgtcattatagcatacgaacatcaaatctgctaaatttgacgtcatccgcatttcaaatacaaaaaaaagaaaaccgcgtttttagaagacaatgctataaacgctattgcatgcaaatatgacctaatatgcgatagttttgtacaacgtgaactagtgattaggtagcataagaagtttgccgacgggctagagtaataagaagatgacaagtaaaagaaataacagtgattagca
gi|9 : ctgA----AATGTT--TC--GA--AAATTGTG-TGTACGAG---GGACGTTCAAAAATAAAACGGTATTTTTCTCTCCGATGAGATTATTATTATTCTCAGGATAACACAACATACATAGAT-GAAAACC-GCTTTCCAGTTTGAAACTGT----CTGAAT-AAGTTAATACTCAACTAGTATGcaatgttgcattaattgaataattctttgagattttttactcatttcatttaagttactatagtttctatagcatattttttgtgatagatcagtaactttttgactttggattctgccaaaacaat
gi|5 : gaaagccaagagtatccgaatcaattttaaaataaacagtggcaattgaaaatgatattgacttcgacaaaattctaaggtaaactgttccattgaaaatatttaaatgatataattaataattaattcataacaccgttatcctattttatcgagaactaaactagatTTAGTATACGAGAAATGACGTTCAAAAATAAATCAT-ATTTTTT-CTTGTATCATATTATTATTTACTTCAGGATAACAATACTTACATCAAT-GAAAACC-GCTTTTCA----------TT----TTG-------TTTATTCACTAGTAGTATGATATGTTGAAAGCAGTGAATGTCCCATTTGTAATAGTAACGCATATCCGACAT-TTGTCGTTTTTGCATGTATTAA--TGTATTAATACTCTATGATAATTGCA----------T-TTATGGTTGTCACTAA---CTTAA-AA-------AAATGTGAGTTAACGTCATTATAGCATACGAACATCAAATCTGCTAAATTTGACGTCATCCGCATTTCAAATACAAAAAAAAGAAAA--CCGCGTTTTTAGAAGACAATGCTATAAACGCTA-TTGCATGCA----AA------TATGACCTAATATGCGAT------A-GTT--T-T-----GTACAAC------------------G--TGA------------------AC-TAGTGATTAG-GTAGCATAAGAAG-TTTGCCGACGG---GCT--AGA--GTAAT----AAGAAGATGACAAGTAAAAGA-AA---TAACAG-TG---ATTAGCAtcaaccaaaagcgtactgctcca
gi|11 : tttaacacgtgtattacatttgtggaatagaaaatagatgtgcggctcttatttgg-TATACCAG---GGACGTTAAAAAATAAATCGG-ATTTTTT-TTCTAATGAAATTATTATCGTCATCAGGATAACAAAACTAACATGAAT-GTAAACC-GCTTCCCATTTTGAAACTTT----TTCAAA-ATTGTTATGCACAACTTGGATTATACGTCCAAAGCAACGAACGTTCCATTTACCATAGTAACGCATATGCGGCTC-ACGTCGTTTT-ACATTTCTTAAAACGTATTAAAACGCCGTGACAATTGCA-----------ATTATGGTGGTC-CAATAACTTTAAAAAT
gi|7 : gatagttattgatggTACGAG---GGATGTTAAAAAAAAAATCGT-ACTTTTT--TCTTATGATATTATTCTTTTCCTCATGATAACACAGTTTACTTATAT-AAAAAAC-GCTTTCCATTTTGAAACTTTGTTTCTGAATTAGTTTAA-GCACAGCTAGGATGAT-----TAAAGCAACGAACGTT------ACCATAGTAACGCATATGC-------------------ATTCCTAAAAACGTATTTAAACGCTGTCACAGTTGTAATTAT-----------GGTTGTC-CAATAGCTTTAA-AATCCGAAAAACTCAAACGTAACGTCATCGTTACATA--A---------CTGCTTAATTTGACGTCATTCGCGATACAAATAC----AAACGTAAAACCCGTTTGTTG-GAAGACT--------GC-GAAATTTACATAAA----AATACTAGTATGGCGTCAT-CGGAAA------A-GTTG
gi|16 : tttaatgtaacacatatgcttaatgtaaaacgtgcgttataagaattaaatacgtaaaatTACGAG---GGATG-TCAAAAGTAAACCAT-ATTTTTT-CTATTATGAGATTATT---TTCTTCAGGATGATACAACTTATGTAAAT-GAAAACCCGCTTTCCATTTTAAAACTTT----CTGAAT-AAGGTTATGCGCAACTAGGATGATAgaagttgacaaaacgccactataaacttataaaatgatgcaaaagggaccacgcaacagttctgtgaa
gi|2 : attattgcatattagtttcACGAG---TGACGTTCAAAAATAAATCGG-ATTTTTT-CTCTAATGATATTATTATTTTCCTCAGGATAATAAAACTTACATAAAT-GTAAACC-GCTTACCATTTTGAAACTTT----CTGAAT-AGTTTTATGCGCAACTAGGATGACACGTCCAAAGCAACAAACGTTCCATTTACCAAAGTAACGCATATGTGGCGC-CCGTCGTTTT-ACATTCTATAAAACGTATTAAAACGCCATCACAATTGCA-----------ATTATGGTTGCC-CAAAAGCTTTAATAATCCGCTAAATTGTAACGTAACATCATAGTAAAATA--A---------CTAGTAAATTTGACGTCATTTGCATTCCAAA------------------------TTTC-GAAGACTGTG--ATAGA-GATATTTGTATGGA----AA------TATGGCGTCAT-CGGAAA------A-GTTG
gi|3 : aaACGAG---GGACGTTCAAAA-TAAATCGG-ACTTTTT-CTCTAATGAAATTATTTTTTTCCTCAGGATAACAAA-CTTACATAAATAGT-AACA-GCTTTCCATTTTGAAACTTT----CTGGAT-AGTTTAATGCGGAACTAGAATGATGGGTCTAAAGCAACGAACGTCCCATTTACCATAGTAACGCATATTCGGCGCACGA-CATTTT-AAATTCCTTAAAACGTACTAAAACGCCGTTACAAATGCAA--A---------TATGGTTGTC-CAATAGCTTTAATAATCCGTCAAATTGTAACATAACGTCCTAGCAACATC--A---------CTACTAAATTTGACGTCATTCGCATTTCAAATAC----AAACGAAAA--CTGCGTTTTA-AAAGACTGTG--ATAGA-GATATTTCCATAAA----AA------TATCGCGTCAT-CGGAAA------A-GTTG-----GAAATTA--GG------------------G--CAA------------------ACATAAAGTTTTGCGTGGgaaattagagcaaaaacaaagttttgcgtgactcttggaaagacgcccacggaaacatataagttgatgtagaaagtacttcgcgatagttttgtaaaccgtgaactagtgtttaggtggcataagaagtttgccgatggacgagattcattggaagatgataaggggagagaacttaagtcgaaaattagcaatgacgtcgtggcgtctgttcgagatgcacttgataacgatcgacgattgacagttaagtcattatccattaggatcggtgtttgtgtgggacaataatacaattctaacggaacatctaatttaaaagatgtccaaggtacacgcacggtgggtgcccaggattttgaaggataacgaaaaagagcgacatgtgaaggattctaaagaaattcttaagcgataaaaaagacggttatgaattcctagcacacgcattaaggaaaaatcgaccagggattccactcaagcattac
gi|10 : TAGTTGTC-CAATAGCTTTAA-AATCTGCCAAATatcttggaaagacgccaacggaaacagagaagttgatgcagaaagtaccacaaaacagttttgtaaaacgtgaactagtgttaacgtggcataagaaatttgcctacggacgcgattcatttgaagatgataaggggagaggacgaatgtcgaaaattagcagtgacgtcctgacgtcctgacgtttgttcgtgatacacttgataacgatcggcgattgacagttaaggcattatccatcaggatcggtgttagtgtgggaacaatttatacaattctaacggaacatttaaagatgttcaaggtacacgcacggtgg
gi|6 : CATA--A---------CTGCTAAATTTGACGTCATTCGCATTTCAAATAC----AAACGTAAA--CTGCGTTTTC-GAAGACTGTG--ATAGA-GATATTTGCATGAA----AA------TATGGCGTCAT-CGGAAC------A-GTTG-----GAAATTA--GG------------------G--CAA------------------ACATAAAGTTTTGCGTGGgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacatttctgtaataaggtgaactagcatttagatggcataggaagctttggacaggtgagatgcatcggatggaagatgataaggagagagtgagagtgaaagtcgaaaattagcacagacatgttctccgacatcttgaacatcttgagatgcacttgataacaatcaatgattggaag
gi|6 : TTTGCGTGGATCTTAG------AAAGACGCCAC-CAGAAACATAT-ACGTTGATGCAAAAAGTACCAC------------------G--CAACCGTTTTGTTAAACGTAAAC-TAGTTTTAAG-GTGGCATACGAAG-TTTGCCGACGG---ACG--AGA--TTCAT----TTGAAGATGATAAGGGGAGAG-GA---CGAAAATCGAAAATTAGCAGTGA-C-GT--CG------T--GACGTC-TG-----TTCGAGATGCTCTTGATAACGATCGACGATTGACAGTT------AAGGTATTATCCATAAGGATCGGTGT-TAGT-GTGG-GAACA-TTTATACAATTCTAACGGAACATTT----------AAAGAGGTCCA----------AGGTACACGCATAGCGT---GTGCACAGGATTTTGAAAGATAACGAAAAAGAGCGACGTGTGAA-GAATTC-TAAGACATTTCTTAGCGATACAAAAAAGACGGAGATGAatcttagaaagacgccaccagaaacatatacgttgatgcaaaaagtaccacgcaaccgttttgttaaacgtaaactagttttaaggtggcatacgaagtttgccgacggacgagattcatttgaagatgataaggggagaggacgaaaatcgaaaattagcagtgacgtcgtgacgtctgttcgagatgctcttgataacgatcgacgattgacagttaaggtattatccataaggatcggtgttagtgtgggaacatttatacaattctaacggaacatttaaagaggtccaaggtacacgcatagcgtgtgcacaggattttgaaagataacgaaaaagagcgacgtgtgaagaattctaagacatttcttagcgatacaaaaaagacggagatgatt
gi|2 : cataactgctaaatttgacgtcattcgcatttcaaatacaaacgtaaactgcgttttcgaagactgtgatagagatatttgcatgaaaatatggcgtcatcggaacagttggaaattagggcaaacataaagtTGGA----AA---------GACGCCCA-CGGAAACATATAA-GTTGATGTAGAAAGTACTTC------------------G--CGATAGTTTTGTAAACCGTGAAC-TAGTGTTTAG-GTGGCATAAGAAG-TTTGCCGATGG---ACG--AGA--TTCAT----TGGAAGATGATAAGGGGAGAG-AA---CTTAAGTCGAAAATTAGCAATGA-C-GT--CG------T--GGCGTC-TG-----TTCGAGATGCACTTGATAACGATCGACGATTGACAGTT------AAGTCATTATCCATTAGGATCGGTGT-TTGT-GTGG-G-ACAA-TAATACAATTCTAACGGAACATCT--AA--TTTAAAAGATGTCCA----------AGGTACACGCA---CGGTGGGTGCCCAGGATTTTGAAGGATAACGAAAAAGAGCGACATGTGAA-GGATTCTAAAGAAATTCTTAAGCGATA-AA-AAAGACGGTTATGAATTCCTAGCACACGCATTAAGGAAAAATCGACCAGGGATTCCACTCAAGCATTACtt
gi|3 : aaacgagtgacgttcaaaaataaatcggattttttctctaatgatattattattttcctcaggataataaaacttacataaatgtaaaccgcttaccattttgaaactttctgaatagttttatgcgcaactaggatgacacgtccaaagcaacaaacgttccatttaccaaagtaacgcatatgtggcgcccgtcgttttacattctataaaacgtattaaaacgccatcacaattgcaattatggttgcccaaaagctttaataatccgctaaattgtaacgtaacatcatagtaaaataactagtaaatttgacgtcatttgcattccaaatttcgaagactgtgatagagatatttgtatggaaatatggcgtcatcggaaaagttggaaattagagcaaaaacaaagttttgcgtgactctTGGA----AA---------GACGCCAA-CGGAAACAGAGAA-GTTGATGCAGAAAGTACCACAAAACAGTTTTGTAAAACG--TGA------------------AC-TAGTGTTAAC-GTGGCATAAGAAA-TTTGCCTACGG---ACG--CGA--TTCAT----TTGAAGATGATAAGGGGAGAG-GA---CGAATGTCGAAAATTAGCAGTGA-C-GTCCTGACGTCCT--GACGTT-TG-----TTCGTGATACACTTGATAACGATCGGCGATTGACAGTT------AAGGCATTATCCATCAGGATCGGTGT-TAGT-GTGG-GAACAATTTATACAATTCTAACGGAACATTT----------AAAGATGTTCA----------AGGTACACGCA---CG
gi|19 : acgagggacgttcaaaataaatcggactttttctctaatgaaattatttttttcctcaggataacaaacttacataaatagtaacagctttccattttgaaactttctggatagtttaatgcggaactagaatgatgggtctaaagcaacgaacgtcccatttaccatagtaacgcatattcggcgcacgacattttaaattccttaaaacgtactaaaacgccgttacaaatgcaaatatggttgtccaatagctttaataatccgtcaaattgtaacataacgtcctagcaacatcactactaaatttgacgtcattcgcatttcaaatacaaacgaaaactgcgttttaaaagactgtgatagagatatttccataaaaatatcgcgtcatcggaaaagttggaaattagggcaaacataaagttttgcgtggatctAACGTGCTAT------------------AGACAG------------------AC--AGTGTT-AG-GTGGCACAGGAAA-TTTGCCGACGGTTGACGGTTGAGATTCAT----TGGAAGATGATAAGGGGAGAG-GA---gtgg
gi|10 : gacccA------------------AC-TAGCATTTAG-ATGGCATAGGAAGCTTTG--GACAG---GTG--AGA--TGCATCGGATGGAAGATGATAAGGAGAGAGTGAGAGTGAAAGTCGAAAATTAGCACAGACATGT--TC------TCCGACATCTTGAACATCTTGAGATGCACTTGATAACAATCAATGATTGc
gi|12 : tagttgtccaatagctttaaaatctgccaaatgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacatttctgtaataaggtgGGAGAG-GA---CGAAAGTCGAAAAGTAGCAGTGA-C-GT--CG------T--GACGTC-TG-----TTCGAGATGCACTTGATAACGATCGACTGTTGACAGTTACTTTATAGACAGTATCCACCGTAATTGAGGT-AAGT-GTAC-GACCAATTTATAC------AACGAAACA----------CTGGAAGATGTCCAgaag
gi|21 : gtggatcttggaaacacgccaacggaaaGGTGTTACGTAGTAGCGAACAATTTATATAAGTCTTACAGAACATTTTGAAGTTTTCAAAGagttacatccaag
gi|20 : GTACACGCA---CAGTAGGTTTCCCTGCCTTTGAAGGAAAATGGAAAAGAGCGATGTGTGAATGAATTCgcaca
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): AAAACCAAGGATATTCGATTGACAGTTAAAGTAAATAGTAGCTCTGACAATTATATCATACTAATTTCTCTGAGGTTAATTGTTAGATGGGAATAGCTTTAATTGATACAGTTATTCATTAGTTAACACCACAGTCAGTTTTTTTGTATCTAGAAACGAGATAAATGTTTCATAAATGATGAGCATGTGAA
Unaligned ( gi|14 ): GAAAACCAAGGATATTCGATTGACAGTTAAAGTAAATAGTAGCTCTGACAATTATATCATACTAATTTCTCTGAGGTTAATTGTTAGATGGGAATAGCTTTAATTGATACAGTTATTCATTAGTTAACACCACAGTCAGTTTTTTTGTATCTAGAAACGAGATAAATGTTTCATAAATGATGAGCATGTGA
Unaligned ( gi|15 ): AAGATTCGACAACATTTTTATATCAAAATATACTCTACAAATCAATAAAGTTCACTTCTTTGAGATTTGCCATTCATTTCATTTAAGTAACCATAGTTTTCTATAGAATATTTTATTGTGATAGATCATTACTTTTTTTACACTGGATTTTGCCAAAAACAGTAG
Unaligned ( gi|17 ): ATGTTGCATTGATTGAACACTTCTTTGAGATTTTCCACTCATATTCATTTAAATTACCATAATTTATATAGGATATCTTATTGTGATAAATCAGTAAGTTTTGACTTTGGATTCTGCCAAAA
Unaligned ( gi|18 ): CCATTTACTATTTAGTACATTATCATTTATTAACATCGGCTACCACAGTTTCTATAGTAATTTTGATTGTGAAAGATCAGTAACTTTTTTAATTTGGATTCTGCCAAAAACAATA
Unaligned ( gi|22 ): GAAAAAAAATCTTCTTACTTATGCGATGTTCATGACTTTTGTGT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2 1 333333 22 777777777777 22 11 2222 222222 11 11111111111111 1 1 6666666 1 11 2 2222 3333333 1111 5555555555555 1 222222222222 1111 1111111 4444444 22222 00000000000000000000000000000000000000000000000000000000000000 1 1111 1111 111 22222222222222 22222222 222222 44444 1 2222222222 1 11 22
lowQualScore : 0 2 5 444444 1 1 11 0 0 1 0 999999999999 44 88 4 4 3 4 2 4 7 1 0 3 1 0 0 7777 111111 7 0 55 1 33333333333333 1 7 7 11 0 3 3 1 3 5555555 5 333 2 88 0 3333 5555555 1 1 8 7777 4 66 777 9999 4 4 4 777 1 4 1 2 66 1 5 0000 5 0 1 5 0 5 6666 6 1 6666666666666 7 44 1 1 1 666666666666 4444 3 2 99 77 99 1 6 9999 7777777 1111111 4 00000 00000000000000000000000000000000000000000000000000000000000000 0 2 8 66 5 888 2222 2222 5 000 44444444444444 6 44444444 333333 1 6 6 6 88888 3 9999999999 0 44 1 0 1 22 22 4 4 3 2 4
lowQualScore : . . . ...... . . .. . . . . ............ .. .. . . . . . . . . . . . . . .... ...... . . .. . .............. . . . .. . . . . . ....... . ... . .. . .... ....... . . . .... . .. ... .... . . . ... . . . . .. . . .... . . . . . . .... . . ............. . .. . . . ............ .... . . .. .. .. . . .... ....... ....... . ..... .............................................................. . . . .. . ... .... .... . ... .............. . ........ ...... . . . . ..... . .......... . .. . . . .. .. . . . . .
lowQualScore : 0 5 5 555555 0 0 33 7 7 0 7 777777777777 00 33 0 0 0 0 5 0 3 0 7 7 0 7 7 0000 000000 3 7 77 0 00000000000000 0 3 0 33 7 3 3 0 0 0000000 5 555 5 55 0 5555 0000000 0 0 0 9999 4 11 888 4444 4 4 4 888 0 4 0 0 11 0 0 6666 0 2 0 1 4 7 7777 7 0 0000000000000 1 77 7 4 0 888888888888 2222 3 2 22 77 22 0 7 4444 6666666 6666666 4 77777 00000000000000000000000000000000000000000000000000000000000000 0 2 9 11 0 888 1111 1111 7 000 77777777777777 7 22222222 000000 4 7 7 7 77777 3 2222222222 0 00 0 7 0 33 00 0 0 0 5 0
consensus : AGTGGTAGTCTTGCTGATATGTCTTTATTAAATGTAGAAAATAGAAATAAGCAATCATGTCTTAANCACGTTTTTAAAATTGTAAATGACAAGACTTAGTGTCCTTCATTGTATGAAAGAAAA---AGT----G-TAAAGATGTGCG-CTCTTAT--TCTACTGGGGCAAATTTATATAATTTTAGTGTACCCAAATACCATGGGAAAGAGAATGTAACCTTCTTTTACAGTGCAATCAATGATTGGAATGCATTGCCTGCTGACATTAAGAAAATTAATAAAANTNGTCACTTTAAAAGTTCTGTCAAGACCCGTTTATTAGACAGAGCTAGGAAAGCATAGTTTATTTGTTGCACTTGTNGACTAGATATGNTCANTGTTTTTAATTGTAATATTTTTATNCAAAATTCGTGATAA-AA-TAA-AATATATTTGTAAACGGCATATATATCNTGGAA-CATTCCATGCGGTAACTTCCAAATTCCAAAGTCTTCAACTTTATATTATGTTTATTTAATT-CAATT-GNAATNTGTACTCTTAGTAATGTATAGTACCAAGGACCTCATTGGAAATAANCNTTCCGGCTTCAATTGAGCAATCGAACGTTAATTAATACAAACTTTTA-TGTACGAGG---GACGTT-CA--AA---AATAAATC----GG-ATTTTT-T-CTC---TNA-TGANATTATTAT--TTTCCTCAGGATAACAAAACTTACATAAATGNAAACC-GCTTTCCATTTTGAAACTTT----CTGAAT-AGTTTTATGCGCAACTAGGATGATACGTCCAAAGCAACGAAC-GTTCCATTTACCATAGTAACGCATATGCGGCGCNCGTCG-TTTTACATTCCTTAAAACGTATTAAAACGCCGTNACAATTGCAA--A-------ATTATGGTTGTCCAATAGCTTTAATAATCCGCCAAATTGTAACGTAACGTCATNGTAACATA--A---------CTGCTAAATTTGACGTCATTCGCATTTCAAATAC----AAACGTAAACCGCGTT--TTC-GAAGAC--TGCGATAGA-GATATTTGCATGGA----AA------TATGGCGTCATCGGAAACA---A-AGTTGATGCAGAAAGTAC----CG--------------C------------------GCGA------------------AC-TAGTGTTTAG-GTGG--CATAGGAAG-TTTGCCGACGG---ACG----AGATTCAT----TGGAAGATGATAAGGGGAGAG-GA---CGAAAGTCGAAAATTAGCA-------GT-----GACGTCGTG-ACGTC--------TGTTCGAGATGCACTTGATAACGATCGACGATTGACAGTTA------AGGCATTATCCATCGGGATCGGTGTTA-GT-GTGG-GAACAATTTATACAATTCTAACGGAACAT---ATTT-AAAGATGTCCA----------AGGTACACGCACGGTGGGTGCCCAGGATTTTGAAGGATAACGAAAAAGAGCGACGTGTGAA-GGATTCTAAAGANATTCTTAAGCGATA-AAAAAAGACGGTTATGAATTCCTAGCACACGCATNAAGGNAAAANCGACNAGGGATNCCACTCAAGCATTAC
Reference ( family-3607 ) : AATGGTAGTCTTGCTGATATGTCTTTAT-AAATGTAGAAAATAGAAATAAGCAATTATGTCTTAAGCATGTTTTTAAAATTGTAAATGACANGACTTAGTGTNCTNCATTNTGTGGAANAGAATTTAGTTTTTGNTAAAGATGTGCGGCTCTTAT--TCTACTGGGGCAAATTTATATAATTTTAGTGTACCCAAATATCATGGGAAAGAGAATATAACCTTCTTTTACAGTGCAATCAATGATTGGAATACATTGCCTGCTAACATTAAGAAAATTAATAAAATTAGTCACTTTAAAAGTTCTGTCAAGACCAGTTTATTAGACAGAGCTAGGAAAGCATAGTTTATTTGTTGCACTTGTAGACTAAATATACTCATTGTTTTTAATTGTAATATNTTTGTGCNAAATTCGTGGTAANAAGTAAAAATACATTTGTAAACGGCATGTATATCCTGNAANCATTCCATGTGATAACTTCCAAATNCCAAAGTCTTCAACTTTATATTATTTTCGTTTGATT-CAATT-GNAATTTGT-------GTAATGTATAGTACCAAGGACTTCATTGGAAATAACCATTCCAGCTTTAATTG-GCAATCGAACGTTAATCAANACANANTTTTA-TGTACGAGG---GACGTT-CA--AA---AATAAATC----GG-ATTTTT-T-CTC---TNA-TGANATTATTAT--TTTCCTCAGGATAACAAAACTTACATAAATGNAAACC-GCTTTCCATTTTGAAACTTT----CTGAAT-AGTTTNATGCGCAACTAGGATGATACGTCCAAAGCAACGAAC-GTTCCATTTACCATAGTAACGCATATGCGGCGCCCGTCG-TTTTACATTCCTTAAAACGTATTAAAACGCCGTNACAATTGCAA--A-------ATTATGGTTGTCCAATAGCTTTAA-AATCCGCCAAATTGTAACGTAACGTCATNGTAACATA--A---------CTGCTAAATTTGACGTCATTCGCATTTCAAATAC----AAACGNAAACCGCGTT--TTC-GAAGAC--TGTGATAGA-GATATTTGCATGGA----AA------TATGGCGTCATCGGAAACA---A-AGTTGATGCAGAAAGTAC----CG--------------C------------------GCGA------------------AC-TAGTGTTTAG-GTGG--CATAAGAAG-TTTGCCGACGG---ACG----AGATTCAT----TGGAAGATGATAAGGGGAGAG-GA---CGAAAGTCGAAAATTAGCA-------GT-----GACGTCGTG-ACGTC--------TGTTCGAGATGCACTTGATAACGATCGACGATTGACAGTTA------AGGCATTATCCATCAGGATCGGTGTTA-GT-GTGG-GAACAATTTATACAATTCTAACGGAACATTTAATTT-AAAGATGTCCA----------AGGTACACGCACGGTGGGTGCCCAGGATTTTGAAGGATAACGAAAAAGAGCGACGTGTGAA-GAATTCTNAAGANATTCCTNAGCGATACAAAAAAGACGGNNATGAATTCCTAGCACACGCATTAAGGAAAAATCGACCAGGGATTCCACTCAAGCATTAC
gi|1 : AGTGGTAGTCTTGCTGATATGTCTTTATTAAATGTAGAAAATAGAAATAAGCAATCATGTCTTAACCACGTTTTTAAA-TTGTAAATGACA------AGTGTCCTTCAT-GTATGAAAGAAAA----------GATAAAGATGTGCA-CTCTTATATTCTACTAGGGCAAATTTATATAATTTTAGTGTACCCAAATACTATGGGAAAGAGAATGTAATTTTCTTTTACAGTGCAATCAATGATTGGAATGCATTGCCTGCTGACATTAAGAAAATTAATAAAAATTGTCATTTTAAAAGTTCTGTCAAGACCCATTTATTAGACAGAGCTAGGAAAGCATAGTTTATTTATTGCACTTGTTGACTAGATATGGTCAATGTTTT-AATTGTAATATTTTTACTCAAAATTTGTGATAA----TGATAATATATTTGTAAACGGCAAATATATTATGGAAACATTCCATGCAGTAACTTCCAAATTCCTAAGTCTTCAACTTTATATTGTGTTTATTTAATTGCAATTTGTAATGTATACTCTTAGTAA-GTATAATACTAAGGACCTCATTGGAAATAAGTCTTTGGGCTTCA--TGAGCAA----ATGTT--TT--TACCAACTTTTA-TGTACGAGT---GACGGT-CA--AA---AATAAATC----AG-ACTTTT-C-CTC---TTA-TGAAATTTTTAA--TTTCCTCAGGATAATAAAACTTACATAAATGTAAACC-GCTTTCCAATTCGAAACTTT----CTGAAT-AGTTTTATGCGCAACTAGGATGATACGTCTAAAGCAACACAC-GTTCCATTTACCACAGTAATGTATATGCGACACCAATCA-TTTTACATTCCTTAAAATGTATTAAAACACCGTGACAATTGCAATTATTTATTTATTATGGTTGTCCAAAAGCTTTAATAATCTGCTTAATTGTAACATAACGTCATCGTAACATA--A---------CTAGTAAATTTGACGTCATTTGTATTTCAAATAC----AAACGTAAACTGTGTT--TTC-GAAGAC--TATGATAGA-GATATTTGCATGGA----AA------TATGGCGTCATCGGA---A---A-AGTTGATGTAGAAAGTAC----TA--------------C------------------GCAA------------------AC-TAGTGTTTAG-GTGG--CATAAGAAG-TTTGCTGACAG---ACG----TGATTCAT----TGGAAGATGATAAGGGGAGAG-GA---TGAAAGTTGAATATTAGCA-------AT-----GAAGTTGTG-ACGTC--------TGTTTGAGATGCACTTGATAACGATCGACGATTGACAGTTC------AGGCATTATCCATTTGGATCGGTGTAA-GT-GTGG-GAACAGTTTATACAATTCTAACGGAACATTCAATTTAAAAGATATCCATGAGGTAAAGAGGTACATGCACGTTACGTGCCCAGGATTTTGAAGGATAACAAAATAGAGCAACATGTGAA-GGATTCAAAAGAAATTCTTAAGCGATA-AACAAAAACAGTTATGAATTCCTAGCACACGCATAAAGGTAAAAGTGACAAGGGATACCACTCAAGCATTAC
gi|10 : TAGTTGTCCAATAGCTTTAA-AATCTGCCAAAT
gi|10 : ------------------GTGA------------------AC-TAGCATTTAG-ATGG--CATAGGAAGCTTTG--GACAG---GTG----AGATGCATCGGATGGAAGATGATAAGGAGAGAGTGAGAGTGAAAGTCGAAAATTAGCACAGACATGTTCTCCGACATCTTGAACATC-----------TTGAGATGCACTTGATAACAATCAATGATTGgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacatttctgtaataaggtgaactagcatttagatggcataggaagctttggacaggtgagatgcatcggatggaagatgataaggagagagtgagagtgaaagtcgaaaattagcacagacatgttctccgacatcttgaacatcttgagatgcacttgataacaatcaatgattggaag
gi|11 : tagttgtccaatagctttaaaatctgccaaatgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacatttctgtaataag-TATACCAGG---GACGTT-AA--AA---AATAAATC----GG-ATTTTT-T-TTC---TAA-TGAAATTATTAT--CGTCATCAGGATAACAAAACTAACATGAATGTAAACC-GCTTCCCATTTTGAAACTTT----TTCAAA-ATTGTTATGCACAACTTGGATTATACGTCCAAAGCAACGAAC-GTTCCATTTACCATAGTAACGCATATGCGGCTCACGTCG-TTTTACATTTCTTAAAACGTATTAAAACGCCGTGACAATTGC----A-------ATTATGGTGGTCCAATAACTTTAA-AAgaag
gi|12 : gatagttattgatggGGAGAG-GA---CGAAAGTCGAAAAGTAGCA-------GT-----GACGTCGTG-ACGTC--------TGTTCGAGATGCACTTGATAACGATCGACTGTTGACAGTTACTTTATAGACAGTATCCACCGTAATTGAGGTAA-GT-GTAC-GACCAATTTATAC------AACGAAAC-----ACTG-GAAGATGTCCA----------AGTTACAat
gi|16 : gtggatcttggaaacacgccaacggaaaTACGAGG---GATGT--CA--AA---AGTAAACC----AT-ATTTTT-T-CTA---TTA-TGAGATTATT-----TTCTTCAGGATGATACAACTTATGTAAATGAAAACCCGCTTTCCATTTTAAAACTTT----CTGAAT-AAGGTTATGCGCAACTAGGATGATAtccaag
gi|19 : attattgcatattagtttcAGTGTT-AG-GTGG--CACAGGAAA-TTTGCCGACGGTTGACGGTTGAGATTCAT----TGGAAGATGATAAGGGGAGAG-GA---C
gi|2 : gacccaacgtgctatagacagacACGAGT---GACGTT-CA--AA---AATAAATC----GG-ATTTTT-T-CTC---TAA-TGATATTATTAT--TTTCCTCAGGATAATAAAACTTACATAAATGTAAACC-GCTTACCATTTTGAAACTTT----CTGAAT-AGTTTTATGCGCAACTAGGATGACACGTCCAAAGCAACAAAC-GTTCCATTTACCAAAGTAACGCATATGTGGCGCCCGTCG-TTTTACATTCTATAAAACGTATTAAAACGCCATCACAATTGC----A-------ATTATGGTTGCCCAAAAGCTTTAATAATCCGCTAAATTGTAACGTAACATCATAGTAAAATA--A---------CTAGTAAATTTGACGTCATTTGCATTCCAAA----------------------T--TTC-GAAGAC--TGTGATAGA-GATATTTGTATGGA----AA------TATGGCGTCATCGGA---A---A-AGTTG
gi|2 : aaTGGA----AA---------GACGCCCACGGAAACATATA-AGTTGATGTAGAAAGTACTTCGCGATAGTTTTGTAAACC------------------GTGA------------------AC-TAGTGTTTAG-GTGG--CATAAGAAG-TTTGCCGATGG---ACG----AGATTCAT----TGGAAGATGATAAGGGGAGAG-AA---CTTAAGTCGAAAATTAGCA-------AT-----GACGTCGTG-GCGTC--------TGTTCGAGATGCACTTGATAACGATCGACGATTGACAGTTA------AGTCATTATCCATTAGGATCGGTGTTT-GT-GTGG-G-ACAA-TAATACAATTCTAACGGAACATCTAATTTAAAAGATGTCCA----------AGGTACACGCACGGTGGGTGCCCAGGATTTTGAAGGATAACGAAAAAGAGCGACATGTGAA-GGATTCTAAAGAAATTCTTAAGCGAT--AAAAAAGACGGTTATGAATTCCTAGCACACGCATTAAGGAAAAATCGACCAGGGATTCCACTCAAGCATTACgaaattagagcaaaaacaaagttttgcgtgactcttggaaagacgcccacggaaacatataagttgatgtagaaagtacttcgcgatagttttgtaaaccgtgaactagtgtttaggtggcataagaagtttgccgatggacgagattcattggaagatgataaggggagagaacttaagtcgaaaattagcaatgacgtcgtggcgtctgttcgagatgcacttgataacgatcgacgattgacagttaagtcattatccattaggatcggtgtttgtgtgggacaataatacaattctaacggaacatctaatttaaaagatgtccaaggtacacgcacggtgggtgcccaggattttgaaggataacgaaaaagagcgacatgtgaaggattctaaagaaattcttaagcgataaaaaagacggttatgaattcctagcacacgcattaaggaaaaatcgaccagggattccactcaagcattac
gi|20 : aaacgagtgacgttcaaaaataaatcggattttttctctaatgatattattattttcctcaggataataaaacttacataaatgtaaaccgcttaccattttgaaactttctgaatagttttatgcgcaactaggatgacacgtccaaagcaacaaacgttccatttaccaaagtaacgcatatgtggcgcccgtcgttttacattctataaaacgtattaaaacgccatcacaattgcaattatggttgcccaaaagctttaataatccgctaaattgtaacgtaacatcatagtaaaataactagtaaatttgacgtcatttgcattccaaatttcgaagactgtgatagagatatttgtatggaaatatggcgtcatcggaaaagttggaaattagagcaaaaacaaagttttgcgtgactctGTACACGCACAGTAGGTTTCCCTGCCTTTGAAGGAAAATGGAAAAGAGCGATGTGTGAATGAATTCTG-AGACA
gi|21 : GGTGTTACGTAGTAGCGAACAATTTATATAAGTCTTACAGAACAT----TTT-GAAGTTTTCAA----------AGGCACAg
gi|3 : ACGAGG---GACGTT-CA--AA---A-TAAATC----GG-ACTTTT-T-CTC---TAA-TGAAATTATTTT--TTTCCTCAGGATAACAAA-CTTACATAAATAGTAACA-GCTTTCCATTTTGAAACTTT----CTGGAT-AGTTTAATGCGGAACTAGAATGATGGGTCTAAAGCAACGAAC-GTCCCATTTACCATAGTAACGCATATTCGGCGCACGACA-TTTTAAATTCCTTAAAACGTACTAAAACGCCGTTACAAATGCAA--A---------TATGGTTGTCCAATAGCTTTAATAATCCGTCAAATTGTAACATAACGTCCTAGCAACATC--A---------CTACTAAATTTGACGTCATTCGCATTTCAAATAC----AAACGAAAACTGCGTT--TTA-AAAGAC--TGTGATAGA-GATATTTCCATAAA----AA------TATCGCGTCATCGGA---A---A-AGTTG-----GAAATTA------G--------------G------------------GCAA------------------ACATAAAGTTTTGCGTGGATCTTGGAAAG--ACGCCAACGG---A
gi|3 : TGGA----AA---------GACGCCAACGGAAACAGAGA-AGTTGATGCAGAAAGTAC----CA--------------CAAAACAGTTTTGTAAAACGTGA------------------AC-TAGTGTTAAC-GTGG--CATAAGAAA-TTTGCCTACGG---ACG----CGATTCAT----TTGAAGATGATAAGGGGAGAG-GA---CGAATGTCGAAAATTAGCA-------GT-----GACGTCCTG-ACGTCCTGACGTTTGTTCGTGATACACTTGATAACGATCGGCGATTGACAGTTA------AGGCATTATCCATCAGGATCGGTGTTA-GT-GTGG-GAACAATTTATACAATTCTAACGGAAC-----ATTT-AAAGATGTTCA----------AGGTACACGCACGGTGGaacagagaagttgatgcagaaagtaccacaaaacagttttgtaaaacgtgaactagtgttaacgtggcataagaaatttgcctacggacgcgattcatttgaagatgataaggggagaggacgaatgtcgaaaattagcagtgacgtcctgacgtcctgacgtttgttcgtgatacacttgataacgatcggcgattgacagttaaggcattatccatcaggatcggtgttagtgtgggaacaatttatacaattctaacggaacatttaaagatgttcaaggtacacgcacggtgg
gi|4 : acgagggacgttcaaaataaatcggactttttctctaatgaaattatttttttcctcaggataacaaacttacataaatagtaacagctttccattttgaaactttctggatagtttaatgcggaactagaatgatgggtctaaagcaacgaacgtcccatttaccatagtaacgcatattcggcgcacgacattttaaattccttaaaacgtactaaaacgccgttacaaatgcaaatatggttgtccaatagctttaataatccgtcaaattgtaacataacgtcctagcaacatcactactaaatttgacgtcattcgcatttcaaatacaaacgaaaactgcgttttaaaagactgtgatagagatatttccataaaaatatcgcgtcatcggaaaagttggaaattagggcaaacataaagttttgcgtggatctAATGGTAGTCTTGCTGATATGTCTTTAT-AAATGTAGAAAATAGAAATAAGCAATTATGTCTTAAGCATGTTTTTAAAATTGTAAATGACAAGACTTAGTGTCCTTCATTATATGAAAGAAAATTTAGTTTTTGTTAAAGATGTGCA-CTCTTAT--TCTACTGGGGCAAATTTATATAATTTTAGTGTACCCAAATATCATGGGAAAGAGAATATAACCTTCTTTTACAGTGCAATCAATGATTGGAATACATTGCCTGCTAACATTAAGAAAATTAATAAAATTAGTCACTTTAAAAGTTCTGTCAAGACCAGTTTATTAGACAGAGCTAGGAAAGCATAGTTTATTTGTTGCACTTGTAGACTAAATATACTCATTGTTTTTAATTGTAATATTTTTATACAAAATTTATGGTAAAAAGTAA-----------TA-----CATGTATAT-TTGTA---------------AACTTCCAAATTCCAAAGTCTTCAACTTTATATTATGTTTATTTAATT-TAATT-G
gi|5 : cttagattttaaaattagaaaaatatttatgttctgctctgatacagtgtcatttagactattcatgttcgtctttgtacccgagtttaaacaaagggttaagatctgtcaaaataaaattgttagattcataattaatgatatgggacctagggaaggtatcaatGTGTATTACATT-TGTGGAATAGAA---AAT---------AGATGTGCGGCTCTTAT--T
gi|5 : tttaacacTTAGTATACGAGAAATGACGTT-CA--AA---AATAAATC----AT-ATTTTT-T-CTT---GTA-TCATATTATTAT--TTACTTCAGGATAACAATACTTACATCAATGAAAACC-GCTTTTCATTTTG---------------------TTTATTCACTAGTAGTATGATATGTTGAAAGCAGTGAAT-GTCCCATTTGTAATAGTAACGCATATCCGACATTTGTCGTTTTTGCATGTATT--AATGTATTAATACTCTATGATAATTGC----A-------TTTATGGTTGT-CACTAAC-TTAA-AA------AAA-TGTGAGTTAACGTCATTATAGCATACGAACATCAAATCTGCTAAATTTGACGTCATCCGCATTTCAAATACAAAAAAAAGAAAACCGCGTT--TTTAGAAGACAATGCTATAAACGCTA-TTGCATGCA----AA------TATGACCTAAT---ATGCG---ATAGTTT-T-------GTAC----AA--------------C------------------GTGA------------------AC-TAGTGATTAG-GTAG--CATAAGAAG-TTTGCCGACGG---GCT----AGAGTAAT----AAGAAGATGACAAGtggttagtatacgagaaatgacgttcaaaaataaatcatattttttcttgtatcatattattatttacttcaggataacaatacttacatcaatgaaaaccgcttttcattttgtttattcactagtagtatgatatgttgaaagcagtgaatgtcccatttgtaatagtaacgcatatccgacatttgtcgtttttgcatgtattaatgtattaatactctatgataattgcatttatggttgtcactaacttaaaaaaatgtgagttaacgtcattatagcatacgaacatcaaatctgctaaatttgacgtcatccgcatttcaaatacaaaaaaaagaaaaccgcgtttttagaagacaatgctataaacgctattgcatgcaaatatgacctaatatgcgatagttttgtacaacgtgaactagtgattaggtagcataagaagtttgccgacgggctagagtaataagaagatgacaagtaaaagaaataacagtgattagca
gi|6 : tttaacacgtgtattacatttgtggaatagaaaatagatgtgcggctcttatttggCATA--A---------CTGCTAAATTTGACGTCATTCGCATTTCAAATAC----AAACGTAAACTGCGTT--TTC-GAAGAC--TGTGATAGA-GATATTTGCATGAA----AA------TATGGCGTCATCGG-AAC------AGTTG-----GAAATTA------G--------------G------------------GCAA------------------ACATAAAGTTTTGCGTGG--taaaagaaataacagtgattagca
gi|6 : TTTGCGTGGATCTTAG------AAAGACGCCACCAGAAACATATA-CGTTGATGCAAAAAGTAC----CA--------------C------------------GCAACCGTTTTGTTAAACGTAAAC-TAGTTTTAAG-GTGG--CATACGAAG-TTTGCCGACGG---ACG----AGATTCAT----TTGAAGATGATAAGGGGAGAG-GA---CGAAAATCGAAAATTAGCA-------GT-----GACGTCGTG-ACGTC--------TGTTCGAGATGCTCTTGATAACGATCGACGATTGACAGTTA------AGGTATTATCCATAAGGATCGGTGTTA-GT-GTGG-GAAC-ATTTATACAATTCTAACGGAAC-----ATTT-AAAGAGGTCCA----------AGGTACACGCATAGCGTGTGCACAGGATTTTGAAAGATAACGAAAAAGAGCGACGTGTGAA-GAATTCT-AAGACATTTCTTAGCGATACAAAAAAGACGGAGATGAatcttagaaagacgccaccagaaacatatacgttgatgcaaaaagtaccacgcaaccgttttgttaaacgtaaactagttttaaggtggcatacgaagtttgccgacggacgagattcatttgaagatgataaggggagaggacgaaaatcgaaaattagcagtgacgtcgtgacgtctgttcgagatgctcttgataacgatcgacgattgacagttaaggtattatccataaggatcggtgttagtgtgggaacatttatacaattctaacggaacatttaaagaggtccaaggtacacgcatagcgtgtgcacaggattttgaaagataacgaaaaagagcgacgtgtgaagaattctaagacatttcttagcgatacaaaaaagacggagatgatt
gi|7 : cataactgctaaatttgacgtcattcgcatttcaaatacaaacgtaaactgcgttttcgaagactgtgatagagatatttgcatgaaaatatggcgtcatcggaacagttggaaattagggcaaacataaagtTACGAGG---GATGTT-AA--AA---AAAAAATC----GT-ACTTTT-T--TC---TTA-TGATATTATTCT--TTTCCTCATGATAACACAGTTTACTTATATAAAAAAC-GCTTTCCATTTTGAAACTTTGTTTCTGAATTAGTTTAA-GCACAGCTAGGATGAT-----TAAAGCAACGAAC-GTT------ACCATAGTAACGCATATGC------------------ATTCCTAAAAACGTATTTAAACGCTGTCACAGTTGTAA-----------TTATGGTTGTCCAATAGCTTTAA-AATCCGAAAAACTCAAACGTAACGTCATCGTTACATA--A---------CTGCTTAATTTGACGTCATTCGCGATACAAATAC----AAACGTAAAACCCGTTTGTTG-GAAGAC--TGCGA-A------ATTTACATAAA----AATACTAGTATGGCGTCATCGGA---A---A-AGTTGtt
gi|8 : tttaatgtaacacatatgcttaatgtaaaacgtgcgttataagaattaaatacgtaaaatTTAATTGTAATATGTTTGTGCTAAATTCGTGATAATAA-TAAAAATATATTTGTAAACGGCATATATATCCTGGAATCATTCCATGTGATAACTTCCAAATGCCA--GTCTTCAACTTTATATTATTTTCGTTTGATT-CAATT-GAAATTTGT-------GTAATGTATAGTACCAAGGACTTCATTGGAAATAACCATTCCAGCTTTAATTG-GCAATCGAACGTTAATTAATACACACTTTTA-TGTATGA-C---AATGTTGCATTAATTGAATAATTCTTTGAG-ATTTTT-TACTCATTTCATTTAAGTTACTATAGTTTCTATAGCATAgaagttgacaaaacgccactataaacttataaaatgatgcaaaagggaccacgcaacagttctgtgaa
gi|9 : ctgAAAATTGTG-TGTACGAGG---GACGTT-CA--AA---AATAAAAC----GGTATTTTTCT-CTC---CGA-TGAGATTATTAT--TATTCTCAGGATAACACAACATACATAGATGAAAACC-GCTTTCCAGTTTGAAACTGT----CTGAAT-AAGTTAATACTCAACTAGTATG-T-CAACCAAA--AGCGTACTGCTCCAttttttgtgatagatcagtaactttttgactttggattctgccaaaacaat
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AAAACCAAGGATATTCGATTGACAGTTAAAGTAAATAGTAGCTCTGACAATTATATCATACTAATTTCTCTGAGGTTAATTGTTAGATGGGAATAGCTTTAATTGATACAGTTATTCATTAGTTAACACCACAGTCAGTTTTTTTGTATCTAGAAACGAGATAAATGTTTCATAAATGATGAGCATGTGAA
Unaligned ( gi|14 ): GAAAACCAAGGATATTCGATTGACAGTTAAAGTAAATAGTAGCTCTGACAATTATATCATACTAATTTCTCTGAGGTTAATTGTTAGATGGGAATAGCTTTAATTGATACAGTTATTCATTAGTTAACACCACAGTCAGTTTTTTTGTATCTAGAAACGAGATAAATGTTTCATAAATGATGAGCATGTGA
Unaligned ( gi|15 ): AAGATTCGACAACATTTTTATATCAAAATATACTCTACAAATCAATAAAGTTCACTTCTTTGAGATTTGCCATTCATTTCATTTAAGTAACCATAGTTTTCTATAGAATATTTTATTGTGATAGATCATTACTTTTTTTACACTGGATTTTGCCAAAAACAGTAG
Unaligned ( gi|17 ): ATGTTGCATTGATTGAACACTTCTTTGAGATTTTCCACTCATATTCATTTAAATTACCATAATTTATATAGGATATCTTATTGTGATAAATCAGTAAGTTTTGACTTTGGATTCTGCCAAAA
Unaligned ( gi|18 ): CCATTTACTATTTAGTACATTATCATTTATTAACATCGGCTACCACAGTTTCTATAGTAATTTTGATTGTGAAAGATCAGTAACTTTTTTAATTTGGATTCTGCCAAAAACAATA
Unaligned ( gi|22 ): GAAAAAAAATCTTCTTACTTATGCGATGTTCATGACTTTTGTGT
Alignments
lowQualScore : 1111111111111 11111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 222222 1 0000000000000 22 1 2222222 4444444 33333333333333333333 11111 111111111 1 1 3333333 1 11 1 2222 111 11 1111 5555555555555 1 222222222222 1111 1111111 4444444 22222 00000000000000000000000000000000000000000000000000000000000000 1 11 1111 1111 111 22222222222222 22222222 222222 44444 1 2222222222 1 1 22
lowQualScore : 5 1 5 999999 5 3333333333333 6 77 1 1 2 1 1 1 5 1 0 0000000 5555555 33333333333333333333 66666 6 555555555 3 3 1 1 2222222 5 1 1 2 88 5 3333 7 999 33 8 0 6 3 7777 4 66 777 9999 4 4 4 777 1 4 1 2 66 1 5 0000 5 0 0 5 0 5 4444 6 1 6666666666666 5 44 1 1 666666666666 4444 3 2 99 77 99 0 1 6 9999 7777777 1111111 4 00000 00000000000000000000000000000000000000000000000000000000000000 0 2 8 22 4 888 2222 2222 5 000 44444444444444 6 44444444 333333 66 6 6 6 11111 3 9999999999 0 5 1 00 1 1 1 1 1
lowQualScore : . . . ...... . ............. . .. . . . . . . . . . ....... ....... .................... ..... . ......... . . . . ....... . . . . .. . .... . ... .. . . . . .... . .. ... .... . . . ... . . . . .. . . .... . . . . . . .... . . ............. . .. . . ............ .... . . .. .. .. . . . .... ....... ....... . ..... .............................................................. . . . .. . ... .... .... . ... .............. . ........ ...... .. . . . ..... . .......... . . . .. . . . . .
lowQualScore : 5 0 5 555555 5 0000000000000 0 55 0 0 5 0 0 0 5 0 7 0000000 7777777 77777777777777777777 77777 7 000000000 3 3 0 0 5555555 5 0 0 5 55 5 5555 3 777 88 8 6 7 7 9999 4 11 888 4444 4 4 4 888 0 4 0 0 11 0 0 6666 0 2 8 1 4 7 8888 7 0 0000000000000 7 77 4 0 888888888888 2222 7 2 22 77 22 7 0 7 4444 6666666 6666666 4 77777 00000000000000000000000000000000000000000000000000000000000000 0 2 9 22 4 888 1111 1111 7 000 77777777777777 7 22222222 000000 00 7 7 7 88888 3 2222222222 0 5 0 77 0 0 0 0 0
consensus : AGTGGTAGTCTTGCTGATATGTCTTTATTAAATGTAGAAAATAGAAATAAGCAATCATGTCTTAANCACGTTTTTAAAATTGTAAATGACAAGACTTAGTGTCCTTCATTGTATGAAAGAAAATTTGGTTTTTGTTAAAGATGTGCACTCTTATATTCTACTGGGGCAAATTTATATAATTTTAGTGTACCCAAATACCATGGGAAAGAGAATGTAACCTTCTTTTACAGTGCAATCAATGATTGGAATGCATTGCCTGCTGACATTAAGAAAATTAATAAAANTNGTCACTTTAAAAGTTCTGTCAAGACCCGTTTATTAGACAGAGCTAGGAAAGCATAGTTTATTTGTTGCACTTGTNGACTAGATATGNTCANTGTTTTTAATTGTAATATTTTTATNCAAAATTCGTGATAA-AA--TAA-AA----TATATTTGTAAACGGCA-ATATATC-TGG-AA-CATTCCATGCGGTAACTTCCAAAT-CCAAAGTCTTCAACTTTATATTATGTTTATTTAATT-CAA-TTGNAATNTGTACTCTTAGTAATGTATAGTACCAAGGACCTCATTGGAAATAANCNTTCCGGCTTCAATTGAGCAATCGAACGTTAATTAA-TAC--AAACTTTTA-TGTACGAGG---GACGTT-CA--AA---AATAAATC----GG-ATTTTT-T-CTC---TNA-TGANATTATTAT--TTTCCTCAGGATAACAAAACTTACATAAATGNAAACC-GCTTTCCATTTTGAAACTTT----CTGAAT-AGTTTTATGCGCAACTAGGATGATACGTCCAAAGCAACGAAC-GTTCCATTTACCATAGTAACGCATATGCGGCGCNCGTCG-TTTTACATTCCTTAAAACGTATTAAAACGCCGTNACAATTGCAA--A-------ATTATGGTTGTCCAATAGCTTTAATAATCCGCCAAATTGTAACGTAACGTCATNGTAACATA--A---------CTGCTAAATTTGACGTCATTCGCATTTCAAATAC----AAACGTAAACCGCGTT--TTC-GAAGAC--TGCGATAGA-GATATTTGCATGGA----AA------TATGGCGTCATCGGAAACA---A-AGTTGATGCAGAAAGTAC----CG--------------C------------------GCGA------------------AC-TAGTGTTTAG-GTGG--CATAGGAAG-TTTGCCGACGG---ACG----AGATTCAT----TGGAAGATGATAAGGGGAGAG-GA---CGAAAGTCGAAAATTAGCA-------GT-----GACGTCGTG-ACGTC--------TGTTCGAGATGCACTTGATAACGATCGACGATTGACAGTTA------AGGCATTATCCATCGGGATCGGTGTTA-GT-GTGG-GAACAATTTATACAATTCTAACGGAACAT---ATTT-AAAGATGTCCA----------AGGTACACGCACGGTGGGTGCCCAGGATTTTGAAGGATAACGAAAAAGAGCGACGTGTGAA-GGATTCTAAAGANATTCTTAAGCGATA-AAAAAAGACGGTTATGAATTCCTAGCACACGCATNAAGGNAAAANCGACNAGGGATNCCACTCAAGCATTAC
Reference ( family-3607 ) : AGTGGTAGTCTTGCTGATATGTCTTTATTAAATGTAGAAAATAGAAATAAGCAATCATGTCTTAANCACGTTTTTAAAATTGTAAATGACAAGACTTAGTGTCCTTCATTGTATGAAAGAAAA---AGT----GT-AAAGATGTGCGCTCT--TATTCTACTGGGGCAAATTTATATAATTTTAGTGTACCCAAATACCATGGGAAAGAGAATGTAACCTTCTTTTACAGTGCAATCAATGATTGGAATGCATTGCCTGCTGACATTAAGAAAATTAATAAAANTNGTCACTTTAAAAGTTCTGTCAAGACCCGTTTATTAGACAGAGCTAGGAAAGCATAGTTTATTTGTTGCACTTGTNGACTAGATATGNTCANTGTTTTTAATTGTAATATTTTTATNCAAAATTCGTGATAA-AA--TAA-AA----TATATTTGTAAACGGCATATATATCNTGG-AA-CATTCCATGCGGTAACTTCCAAATTCCAAAGTCTTCAACTTTATATTATGTTTATTTAATT-CAA-TTGNAATNTGTACTCTTAGTAATGTATAGTACCAAGGACCTCATTGGAAATAANCNTTCCGGCTTCAATTGAGCAATCGAACGTTAATTAA-TAC--AAACTTTTA-TGTACGAGG---GACGTT-CA--AA---AATAAATC----GG-ATTTTT-T-CTC---TNA-TGANATTATTAT--TTTCCTCAGGATAACAAAACTTACATAAATGNAAACC-GCTTTCCATTTTGAAACTTT----CTGAAT-AGTTTTATGCGCAACTAGGATGATACGTCCAAAGCAACGAAC-GTTCCATTTACCATAGTAACGCATATGCGGCGCNCGTCG-TTTTACATTCCTTAAAACGTATTAAAACGCCGTNACAATTGCAA--A-------ATTATGGTTGTCCAATAGCTTTAATAATCCGCCAAATTGTAACGTAACGTCATNGTAACATA--A---------CTGCTAAATTTGACGTCATTCGCATTTCAAATAC----AAACGTAAACCGCGTT--TTC-GAAGAC--TGCGATAGA-GATATTTGCATGGA----AA------TATGGCGTCATCGGAAACA---A-AGTTGATGCAGAAAGTAC----CG--------------C------------------GCGA------------------AC-TAGTGTTTAG-GTGG--CATAGGAAG-TTTGCCGACGG---ACG----AGATTCAT----TGGAAGATGATAAGGGGAGAG-GA---CGAAAGTCGAAAATTAGCA-------GT-----GACGTCGTG-ACGTC--------TGTTCGAGATGCACTTGATAACGATCGACGATTGACAGTTA------AGGCATTATCCATCGGGATCGGTGTTA-GT-GTGG-GAACAATTTATACAATTCTAACGGAACAT---ATTT-AAAGATGTCCA----------AGGTACACGCACGGTGGGTGCCCAGGATTTTGAAGGATAACGAAAAAGAGCGACGTGTGAA-GGATTCTAAAGANATTCTTAAGCGATA-AAAAAAGACGGTTATGAATTCCTAGCACACGCATNAAGGNAAAANCGACNAGGGATNCCACTCAAGCATTAC
gi|1 : AGTGGTAGTCTTGCTGATATGTCTTTATTAAATGTAGAAAATAGAAATAAGCAATCATGTCTTAACCACGTTTTTAAA-TTGTAAATGACAAG------TGTCCTTCAT-GTATGAAAGAAAA---G------AT-AAAGATGTGCACTCTTATATTCTACTAGGGCAAATTTATATAATTTTAGTGTACCCAAATACTATGGGAAAGAGAATGTAATTTTCTTTTACAGTGCAATCAATGATTGGAATGCATTGCCTGCTGACATTAAGAAAATTAATAAAAATTGTCATTTTAAAAGTTCTGTCAAGACCCATTTATTAGACAGAGCTAGGAAAGCATAGTTTATTTATTGCACTTGTTGACTAGATATGGTCAATG-TTTTAATTGTAATATTTTTACTCAAAATTTGTGAT---AA--TGATAA----TATATTTGTAAACGGCAAATATATTATGGAAA-CATTCCATGCAGTAACTTCCAAATTCCTAAGTCTTCAACTTTATATTGTGTTTATTTAATTGCAATTTGTAATGTATACTCTTAGTAA-GTATAATACTAAGGACCTCATTGGAAATAAGTCTTTGGGCTTCA--TGAGCA----AATGTT--TT---TAC--CAACTTTTA-TGTACGAGT---GACGGT-CA--AA---AATAAATC----AG-ACTTTT-C-CTC---TTA-TGAAATTTTTAA--TTTCCTCAGGATAATAAAACTTACATAAATGTAAACC-GCTTTCCAATTCGAAACTTT----CTGAAT-AGTTTTATGCGCAACTAGGATGATACGTCTAAAGCAACACAC-GTTCCATTTACCACAGTAATGTATATGCGACACCAATCA-TTTTACATTCCTTAAAATGTATTAAAACACCGTGACAATTGCAATTATTTATTTATTATGGTTGTCCAAAAGCTTTAATAATCTGCTTAATTGTAACATAACGTCATCGTAACATA--A---------CTAGTAAATTTGACGTCATTTGTATTTCAAATAC----AAACGTAAACTGTGTT--TTC-GAAGAC--TATGATAGA-GATATTTGCATGGA----AA------TATGGCGTCATCGGA---A---A-AGTTGATGTAGAAAGTAC----TA--------------C------------------GCAA------------------AC-TAGTGTTTAG-GTGG--CATAAGAAG-TTTGCTGACAG---ACG----TGATTCAT----TGGAAGATGATAAGGGGAGAG-GA---TGAAAGTTGAATATTAGCA-------AT-----GAAGTTGTG-ACGTC--------TGTTTGAGATGCACTTGATAACGATCGACGATTGACAGTTC------AGGCATTATCCATTTGGATCGGTGTAA-GT-GTGG-GAACAGTTTATACAATTCTAACGGAACATTCAATTTAAAAGATATCCATGAGGTAAAGAGGTACATGCACGTTACGTGCCCAGGATTTTGAAGGATAACAAAATAGAGCAACATGTGAA-GGATTCAAAAGAAATTCTTAAGCGATA-AACAAAAACAGTTATGAATTCCTAGCACACGCATAAAGGTAAAAGTGACAAGGGATACCACTCAAGCATTAC
gi|10 : TAGTTGTCCAATAGCTTTAA-AATCTGCCAAAT
gi|10 : ------------------GTGA------------------AC-TAGCATTTAG-ATGG--CATAGGAAGCTTTG--GACAG---GTG----AGATGCATCGGATGGAAGATGATAAGGAGAGAGTGAGAGTGAAAGTCGAAAATTAGCACAGACATGTTCTCCGACATCTTGAACATC-----------TTGAGATGCACTTGATAACAATCAATGATTGgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacatttctgtaataaggtgaactagcatttagatggcataggaagctttggacaggtgagatgcatcggatggaagatgataaggagagagtgagagtgaaagtcgaaaattagcacagacatgttctccgacatcttgaacatcttgagatgcacttgataacaatcaatgattggaag
gi|11 : tagttgtccaatagctttaaaatctgccaaatgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacatttctgtaataag-TATACCAGG---GACGTT-AA--AA---AATAAATC----GG-ATTTTT-T-TTC---TAA-TGAAATTATTAT--CGTCATCAGGATAACAAAACTAACATGAATGTAAACC-GCTTCCCATTTTGAAACTTT----TTCAAA-ATTGTTATGCACAACTTGGATTATACGTCCAAAGCAACGAAC-GTTCCATTTACCATAGTAACGCATATGCGGCTCACGTCG-TTTTACATTTCTTAAAACGTATTAAAACGCCGTGACAATTGC----A-------ATTATGGTGGTCCAATAACTTTAAAAATgaag
gi|12 : gatagttattgatggGGAGAG-GA---CGAAAGTCGAAAAGTAGCA-------GT-----GACGTCGTG-ACGTC--------TGTTCGAGATGCACTTGATAACGATCGACTGTTGACAGTTACTTTATAGACAGTATCCACCGTAATTGAGGTAA-GT-GTAC-GACCAATTTATAC------AACGAAAC-----ACTG-GAAGATGTCCA----------AGTTACA
gi|16 : gtggatcttggaaacacgccaacggaaaTACGAGG---GATGT--CA--AA---AGTAAACC----AT-ATTTTT-T-CTA---TTA-TGAGATTATT-----TTCTTCAGGATGATACAACTTATGTAAATGAAAACCCGCTTTCCATTTTAAAACTTT----CTGAAT-AAGGTTATGCGCAACTAGGATGATAtccaag
gi|19 : attattgcatattagtttcAGTGTT-AG-GTGG--CACAGGAAA-TTTGCCGACGGTTGACGGTTGAGATTCAT----TGGAAGATGATAAGGGGAGAG-GA---C
gi|2 : gacccaacgtgctatagacagacACGAGT---GACGTT-CA--AA---AATAAATC----GG-ATTTTT-T-CTC---TAA-TGATATTATTAT--TTTCCTCAGGATAATAAAACTTACATAAATGTAAACC-GCTTACCATTTTGAAACTTT----CTGAAT-AGTTTTATGCGCAACTAGGATGACACGTCCAAAGCAACAAAC-GTTCCATTTACCAAAGTAACGCATATGTGGCGCCCGTCG-TTTTACATTCTATAAAACGTATTAAAACGCCATCACAATTGC----A-------ATTATGGTTGCCCAAAAGCTTTAATAATCCGCTAAATTGTAACGTAACATCATAGTAAAATA--A---------CTAGTAAATTTGACGTCATTTGCATTCCAAA----------------------T--TTC-GAAGAC--TGTGATAGA-GATATTTGTATGGA----AA------TATGGCGTCATCGGA---A---A-AGTTG
gi|2 : aaTGGA----AA---------GACGCCCACGGAAACATATA-AGTTGATGTAGAAAGTACTTCGCGATAGTTTTGTAAACC------------------GTGA------------------AC-TAGTGTTTAG-GTGG--CATAAGAAG-TTTGCCGATGG---ACG----AGATTCAT----TGGAAGATGATAAGGGGAGAG-AA---CTTAAGTCGAAAATTAGCA-------AT-----GACGTCGTG-GCGTC--------TGTTCGAGATGCACTTGATAACGATCGACGATTGACAGTTA------AGTCATTATCCATTAGGATCGGTGTTT-GT-GTGG-G-ACAA-TAATACAATTCTAACGGAACATCTAATTTAAAAGATGTCCA----------AGGTACACGCACGGTGGGTGCCCAGGATTTTGAAGGATAACGAAAAAGAGCGACATGTGAA-GGATTCTAAAGAAATTCTTAAGCGAT--AAAAAAGACGGTTATGAATTCCTAGCACACGCATTAAGGAAAAATCGACCAGGGATTCCACTCAAGCATTACgaaattagagcaaaaacaaagttttgcgtgactcttggaaagacgcccacggaaacatataagttgatgtagaaagtacttcgcgatagttttgtaaaccgtgaactagtgtttaggtggcataagaagtttgccgatggacgagattcattggaagatgataaggggagagaacttaagtcgaaaattagcaatgacgtcgtggcgtctgttcgagatgcacttgataacgatcgacgattgacagttaagtcattatccattaggatcggtgtttgtgtgggacaataatacaattctaacggaacatctaatttaaaagatgtccaaggtacacgcacggtgggtgcccaggattttgaaggataacgaaaaagagcgacatgtgaaggattctaaagaaattcttaagcgataaaaaagacggttatgaattcctagcacacgcattaaggaaaaatcgaccagggattccactcaagcattac
gi|20 : aaacgagtgacgttcaaaaataaatcggattttttctctaatgatattattattttcctcaggataataaaacttacataaatgtaaaccgcttaccattttgaaactttctgaatagttttatgcgcaactaggatgacacgtccaaagcaacaaacgttccatttaccaaagtaacgcatatgtggcgcccgtcgttttacattctataaaacgtattaaaacgccatcacaattgcaattatggttgcccaaaagctttaataatccgctaaattgtaacgtaacatcatagtaaaataactagtaaatttgacgtcatttgcattccaaatttcgaagactgtgatagagatatttgtatggaaatatggcgtcatcggaaaagttggaaattagagcaaaaacaaagttttgcgtgactctGTACACGCACAGTAGGTTTCCCTGCCTTTGAAGGAAAATGGAAAAGAGCGATGTGTGAATGAATTCT-GAGACA
gi|21 : GGTGTTACGTAGTAGCGAACAATTTATATAAGTCTTACAGAACAT----TTT-GAAGTTTTCAA----------AGGCACAg
gi|3 : ACGAGG---GACGTT-CA--AA---A-TAAATC----GG-ACTTTT-T-CTC---TAA-TGAAATTATTTT--TTTCCTCAGGATAACAAA-CTTACATAAATAGTAACA-GCTTTCCATTTTGAAACTTT----CTGGAT-AGTTTAATGCGGAACTAGAATGATGGGTCTAAAGCAACGAAC-GTCCCATTTACCATAGTAACGCATATTCGGCGCACGACA-TTTTAAATTCCTTAAAACGTACTAAAACGCCGTTACAAATGCAA--A---------TATGGTTGTCCAATAGCTTTAATAATCCGTCAAATTGTAACATAACGTCCTAGCAACATC--A---------CTACTAAATTTGACGTCATTCGCATTTCAAATAC----AAACGAAAACTGCGTT--TTA-AAAGAC--TGTGATAGA-GATATTTCCATAAA----AA------TATCGCGTCATCGGA---A---A-AGTTG-----GAAATTA------G--------------G------------------GCAA------------------ACATAAAGTTTTGCGTGGATCTTGGAAAG--ACGCCAACGG---A
gi|3 : TGGA----AA---------GACGCCAACGGAAACAGAGA-AGTTGATGCAGAAAGTAC----CA--------------CAAAACAGTTTTGTAAAACGTGA------------------AC-TAGTGTTAAC-GTGG--CATAAGAAA-TTTGCCTACGG---ACG----CGATTCAT----TTGAAGATGATAAGGGGAGAG-GA---CGAATGTCGAAAATTAGCA-------GT-----GACGTCCTG-ACGTCCTGACGTTTGTTCGTGATACACTTGATAACGATCGGCGATTGACAGTTA------AGGCATTATCCATCAGGATCGGTGTTA-GT-GTGG-GAACAATTTATACAATTCTAACGGAAC-----ATTT-AAAGATGTTCA----------AGGTACACGCACGGTGGaacagagaagttgatgcagaaagtaccacaaaacagttttgtaaaacgtgaactagtgttaacgtggcataagaaatttgcctacggacgcgattcatttgaagatgataaggggagaggacgaatgtcgaaaattagcagtgacgtcctgacgtcctgacgtttgttcgtgatacacttgataacgatcggcgattgacagttaaggcattatccatcaggatcggtgttagtgtgggaacaatttatacaattctaacggaacatttaaagatgttcaaggtacacgcacggtgg
gi|4 : acgagggacgttcaaaataaatcggactttttctctaatgaaattatttttttcctcaggataacaaacttacataaatagtaacagctttccattttgaaactttctggatagtttaatgcggaactagaatgatgggtctaaagcaacgaacgtcccatttaccatagtaacgcatattcggcgcacgacattttaaattccttaaaacgtactaaaacgccgttacaaatgcaaatatggttgtccaatagctttaataatccgtcaaattgtaacataacgtcctagcaacatcactactaaatttgacgtcattcgcatttcaaatacaaacgaaaactgcgttttaaaagactgtgatagagatatttccataaaaatatcgcgtcatcggaaaagttggaaattagggcaaacataaagttttgcgtggatctAATGGTAGTCTTGCTGATATGTCTTTAT-AAATGTAGAAAATAGAAATAAGCAATTATGTCTTAAGCATGTTTTTAAAATTGTAAATGACAAGACTTAGTGTCCTTCATTATATGAAAGAAAATTTAGTTTTTGTTAAAGATGTGCACTCT--TATTCTACTGGGGCAAATTTATATAATTTTAGTGTACCCAAATATCATGGGAAAGAGAATATAACCTTCTTTTACAGTGCAATCAATGATTGGAATACATTGCCTGCTAACATTAAGAAAATTAATAAAATTAGTCACTTTAAAAGTTCTGTCAAGACCAGTTTATTAGACAGAGCTAGGAAAGCATAGTTTATTTGTTGCACTTGTAGACTAAATATACTCATTGTTTTTAATTGTAATATTTTTATACAAAATTTATGGTAA-AAAGTAA-TACATGTATATTTGTAAAC----------------------TTCCA------AA-TTCC-------AAAGTCTTCAACTTTATATTATGTTTATTTAATT-TAA-TTG
gi|5 : cttagattttaaaattagaaaaatatttatgttctgctctgatacagtgtcatttagactattcatgttcgtctttgtacccgagtttaaacaaagggttaagatctgtcaaaataaaattgttagattcataattaatgatatgggacctagggaaggtatcaatTTAGTATACGAGAAATGACGTT-CA--AA---AATAAATC----AT-ATTTTT-T-CTT---GTA-TCATATTATTAT--TTACTTCAGGATAACAATACTTACATCAATGAAAACC-GCTTTTCATTTTG---------------------TTTATTCACTAGTAGTATGATATGTTGAAAGCAGTGAAT-GTCCCATTTGTAATAGTAACGCATATCCGACATTTGTCGTTTTTGCATGTATT--AATGTATTAATACTCTATGATAATTGC----A-------TTTATGGTTGT-CACTAACTTAAA---------AAAATGTGAGTTAACGTCATTATAGCATACGAACATCAAATCTGCTAAATTTGACGTCATCCGCATTTCAAATACAAAAAAAAGAAAACCGCGTT--TTTAGAAGACAATGCTATAAACGCTA-TTGCATGCA----AA------TATGACCTAAT---ATGCG---ATAGTTT-T-------GTAC----AA--------------C------------------GTGA------------------AC-TAGTGATTAG-GTAG--CATAAGAAG-TTTGCCGACGG---GCT----AGAGTAAT----AAGAAGATGACAAG
gi|6 : tttaacacgtgtattacatttgtggaatagaaaatagatgtgcggctcttatttggCATA--A---------CTGCTAAATTTGACGTCATTCGCATTTCAAATAC----AAACGTAAACTGCGTT--TTC-GAAGAC--TGTGATAGA-GATATTTGCATGAA----AA------TATGGCGTCATCGG-AAC------AGTTG-----GAAATTA------G--------------G------------------GCAA------------------ACATAAAGTTTTGCGTGGATCTTAGAAAG-taaaagaaataacagtgattagca
gi|6 : TTTGCGTGGATCTTAG------AAAGACGCCACCAGAAACATATA-CGTTGATGCAAAAAGTAC----CA--------------C------------------GCAACCGTTTTGTTAAACGTAAAC-TAGTTTTAAG-GTGG--CATACGAAG-TTTGCCGACGG---ACG----AGATTCAT----TTGAAGATGATAAGGGGAGAG-GA---CGAAAATCGAAAATTAGCA-------GT-----GACGTCGTG-ACGTC--------TGTTCGAGATGCTCTTGATAACGATCGACGATTGACAGTTA------AGGTATTATCCATAAGGATCGGTGTTA-GT-GTGG-GAAC-ATTTATACAATTCTAACGGAAC-----ATTT-AAAGAGGTCCA----------AGGTACACGCATAGCGTGTGCACAGGATTTTGAAAGATAACGAAAAAGAGCGACGTGTGAA-GAATTCT-AAGACATTTCTTAGCGATACAAAAAAGACGGAGATGAacgccaccagaaacatatacgttgatgcaaaaagtaccacgcaaccgttttgttaaacgtaaactagttttaaggtggcatacgaagtttgccgacggacgagattcatttgaagatgataaggggagaggacgaaaatcgaaaattagcagtgacgtcgtgacgtctgttcgagatgctcttgataacgatcgacgattgacagttaaggtattatccataaggatcggtgttagtgtgggaacatttatacaattctaacggaacatttaaagaggtccaaggtacacgcatagcgtgtgcacaggattttgaaagataacgaaaaagagcgacgtgtgaagaattctaagacatttcttagcgatacaaaaaagacggagatgatt
gi|7 : cataactgctaaatttgacgtcattcgcatttcaaatacaaacgtaaactgcgttttcgaagactgtgatagagatatttgcatgaaaatatggcgtcatcggaacagttggaaattagggcaaacataaagtAATTAAATACGTAAA-----A-T-TACGAGG---GATGTT-AA--AA---AAAAAATC----GT-ACTTTT-T--TC---TTA-TGATATTATTCT--TTTCCTCATGATAACACAGTTTACTTATATAAAAAAC-GCTTTCCATTTTGAAACTTTGTTTCTGAATTAGTTTAA-GCACAGCTAGGATGAT-----TAAAGCAACGAAC-GTT------ACCATAGTAACGCATATGC------------------ATTCCTAAAAACGTATTTAAACGCTGTCACAGTTGTAA-----------TTATGGTTGTCCAATAGCTTTAA-AATCCGAAAAACTCAAACGTAACGTCATCGTTACATA--A---------CTGCTTAATTTGACGTCATTCGCGATACAAATAC----AAACGTAAAACCCGTTTGTTG-GAAGAC--TGCGA-A------ATTTACATAAA----AATACTAGTATGGCGTCATCGGA---A---A-AGTTGtt
gi|8 : tttaatgtaacacatatgcttaatgtaaaacgtgcgttataagTTAATTGTAATATGTTTGTGCTAAATTCGTGATAATAA--TAA-AAA---TATATTTGTAAACGGCATATATATCCTGG-AATCATTCCATGTGATAACTTCCAAATGCCA--GTCTTCAACTTTATATTATTTTCGTTTGATT-CAA-TTGAAATTTGT-------GTAATGTATAGTACCAAGGACTTCATTGGAAATAACCATTCCAGCTTTAATTG-GCAATCGAACGTTAATTAA-TAC--ACACTTTTA-TGTATGA-C---AATGTTGCATTAATTGAATAATTCTTTGAG-ATTTTT-TACTCATTTCATTTAAGTTACTATAGTTTCTATAGCATAgaagttgacaaaacgccactataaacttataaaatgatgcaaaagggaccacgcaacagttctgtgaa
gi|9 : ctg--AAAATTGTG-TGTACGAGG---GACGTT-CA--AA---AATAAAAC----GGTATTTTTCT-CTC---CGA-TGAGATTATTAT--TATTCTCAGGATAACACAACATACATAGATGAAAACC-GCTTTCCAGTTTGAAACTGT----CTGAAT-AAGTTAATACTCAACTAGTATG-T-CAACCAAA--AGCGTACTGCTCCAttttttgtgatagatcagtaactttttgactttggattctgccaaaacaat
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AAAACCAAGGATATTCGATTGACAGTTAAAGTAAATAGTAGCTCTGACAATTATATCATACTAATTTCTCTGAGGTTAATTGTTAGATGGGAATAGCTTTAATTGATACAGTTATTCATTAGTTAACACCACAGTCAGTTTTTTTGTATCTAGAAACGAGATAAATGTTTCATAAATGATGAGCATGTGAA
Unaligned ( gi|14 ): GAAAACCAAGGATATTCGATTGACAGTTAAAGTAAATAGTAGCTCTGACAATTATATCATACTAATTTCTCTGAGGTTAATTGTTAGATGGGAATAGCTTTAATTGATACAGTTATTCATTAGTTAACACCACAGTCAGTTTTTTTGTATCTAGAAACGAGATAAATGTTTCATAAATGATGAGCATGTGA
Unaligned ( gi|15 ): AAGATTCGACAACATTTTTATATCAAAATATACTCTACAAATCAATAAAGTTCACTTCTTTGAGATTTGCCATTCATTTCATTTAAGTAACCATAGTTTTCTATAGAATATTTTATTGTGATAGATCATTACTTTTTTTACACTGGATTTTGCCAAAAACAGTAG
Unaligned ( gi|17 ): ATGTTGCATTGATTGAACACTTCTTTGAGATTTTCCACTCATATTCATTTAAATTACCATAATTTATATAGGATATCTTATTGTGATAAATCAGTAAGTTTTGACTTTGGATTCTGCCAAAA
Unaligned ( gi|18 ): CCATTTACTATTTAGTACATTATCATTTATTAACATCGGCTACCACAGTTTCTATAGTAATTTTGATTGTGAAAGATCAGTAACTTTTTTAATTTGGATTCTGCCAAAAACAATA
Unaligned ( gi|22 ): GAAAAAAAATCTTCTTACTTATGCGATGTTCATGACTTTTGTGT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 222222 1 4444444444 11 1 2222222 4444444 777777777777777777777 11111 111 1 1 3333333 1 11 1 2222 111 11 1111 5555555555555 1 222222222222 1111 1111111 4444444 22222 00000000000000000000000000000000000000000000000000000000000000 1 11 1111 1111 111 22222222222222 22222222 222222 44444 1 2222222222 1 1 22
lowQualScore : 5 1 5 999999 5 9999999999 4 88 1 1 2 1 1 1 5 1 0 0000000 5555555 333333333333333333333 66666 777 7 3 3 1 1 2222222 5 1 1 2 88 5 3333 7 999 33 8 0 6 3 7777 4 66 777 9999 4 4 4 777 1 4 1 2 66 1 5 0000 5 0 0 5 0 5 4444 6 1 6666666666666 5 44 1 1 666666666666 4444 3 2 99 77 99 0 1 6 9999 7777777 1111111 4 00000 00000000000000000000000000000000000000000000000000000000000000 0 2 8 22 4 888 2222 2222 5 000 44444444444444 6 44444444 333333 66 6 6 6 11111 3 9999999999 0 5 1 00 1 1 1 1 1
lowQualScore : . . . ...... . .......... . .. . . . . . . . . . ....... ....... ..................... ..... ... . . . . . ....... . . . . .. . .... . ... .. . . . . .... . .. ... .... . . . ... . . . . .. . . .... . . . . . . .... . . ............. . .. . . ............ .... . . .. .. .. . . . .... ....... ....... . ..... .............................................................. . . . .. . ... .... .... . ... .............. . ........ ...... .. . . . ..... . .......... . . . .. . . . . .
lowQualScore : 5 0 5 555555 5 5555555555 0 55 0 0 5 0 0 0 5 0 7 0000000 7777777 777777777777777777777 77777 777 3 3 3 0 0 5555555 5 0 0 5 55 5 5555 3 777 88 8 6 7 7 9999 4 11 888 4444 4 4 4 888 0 4 0 0 11 0 0 6666 0 2 8 1 4 7 8888 7 0 0000000000000 7 77 4 0 888888888888 2222 7 2 22 77 22 7 0 7 4444 6666666 6666666 4 77777 00000000000000000000000000000000000000000000000000000000000000 0 2 9 22 4 888 1111 1111 7 000 77777777777777 7 22222222 000000 00 7 7 7 88888 3 2222222222 0 5 0 77 0 0 0 0 0
consensus : AGTGGTAGTCTTGCTGATATGTCTTTATTAAATGTAGAAAATAGAAATAAGCAATCATGTCTTAANCACGTTTTTAAAATTGTAAATGACAAGACTTAGTGTCCTTCATTGTATGAAAGAAAATTTAGTTTTTGNTAAAGATGTGCACTCTTATATTCTACTGGGGCAAATTTATATAATTTTAGTGTACCCAAATACCATGGGAAAGAGAATGTAACCTTCTTTTACAGTGCAATCAATGATTGGAATGCATTGCCTGCTGACATTAAGAAAATTAATAAAANTNGTCACTTTAAAAGTTCTGTCAAGACCCGTTTATTAGACAGAGCTAGGAAAGCATAGTTTATTTGTTGCACTTGTNGACTAGATATGNTCANTGTTTTTAATTGTAATATTTTTATNCAAAATTCGTGATAA-AA--TAA-AA----TATATTTGTAAACGGC-A-ATATATC-TGG-AA-CATTCCATGCGGTAACTTCCAAA-T-CCAAAGTCTTCAACTTTATATTATGTTTATTTAATT-CAA-TTGNAATNTGTACTCTTAGTAATGTATAGTACCAAGGACCTCATTGGAAATAANCNTTCCGGCTTCAATTGAGCAATCGAACGTTAATTAA-TAC--AAACTTTTA-TGTACGAGG---GACGTT-CA--AA---AATAAATC----GG-ATTTTT-T-CTC---TNA-TGANATTATTAT--TTTCCTCAGGATAACAAAACTTACATAAATGNAAACC-GCTTTCCATTTTGAAACTTT----CTGAAT-AGTTTTATGCGCAACTAGGATGATACGTCCAAAGCAACGAAC-GTTCCATTTACCATAGTAACGCATATGCGGCGCNCGTCG-TTTTACATTCCTTAAAACGTATTAAAACGCCGTNACAATTGCAA--A-------ATTATGGTTGTCCAATAGCTTTAATAATCCGCCAAATTGTAACGTAACGTCATNGTAACATA--A---------CTGCTAAATTTGACGTCATTCGCATTTCAAATAC----AAACGTAAACCGCGTT--TTC-GAAGAC--TGCGATAGA-GATATTTGCATGGA----AA------TATGGCGTCATCGGAAACA---A-AGTTGATGCAGAAAGTAC----CG--------------C------------------GCGA------------------AC-TAGTGTTTAG-GTGG--CATAGGAAG-TTTGCCGACGG---ACG----AGATTCAT----TGGAAGATGATAAGGGGAGAG-GA---CGAAAGTCGAAAATTAGCA-------GT-----GACGTCGTG-ACGTC--------TGTTCGAGATGCACTTGATAACGATCGACGATTGACAGTTA------AGGCATTATCCATCGGGATCGGTGTTA-GT-GTGG-GAACAATTTATACAATTCTAACGGAACAT---ATTT-AAAGATGTCCA----------AGGTACACGCACGGTGGGTGCCCAGGATTTTGAAGGATAACGAAAAAGAGCGACGTGTGAA-GGATTCTAAAGANATTCTTAAGCGATA-AAAAAAGACGGTTATGAATTCCTAGCACACGCATNAAGGNAAAANCGACNAGGGATNCCACTCAAGCATTAC
Reference ( family-3607 ) : AGTGGTAGTCTTGCTGATATGTCTTTATTAAATGTAGAAAATAGAAATAAGCAATCATGTCTTAANCACGTTTTTAAAATTGTAAATGACAAGACTTAGTGTCCTTCATTGTATGAAAGAAAATTTGGTTTTTGTTAAAGATGTGCACTCTTATATTCTACTGGGGCAAATTTATATAATTTTAGTGTACCCAAATACCATGGGAAAGAGAATGTAACCTTCTTTTACAGTGCAATCAATGATTGGAATGCATTGCCTGCTGACATTAAGAAAATTAATAAAANTNGTCACTTTAAAAGTTCTGTCAAGACCCGTTTATTAGACAGAGCTAGGAAAGCATAGTTTATTTGTTGCACTTGTNGACTAGATATGNTCANTGTTTTTAATTGTAATATTTTTATNCAAAATTCGTGATAA-AA--TAA-AA----TATATTTGTAAACGGC-A-ATATATC-TGG-AA-CATTCCATGCGGTAACTTCCAAA-T-CCAAAGTCTTCAACTTTATATTATGTTTATTTAATT-CAA-TTGNAATNTGTACTCTTAGTAATGTATAGTACCAAGGACCTCATTGGAAATAANCNTTCCGGCTTCAATTGAGCAATCGAACGTTAATTAA-TAC--AAACTTTTA-TGTACGAGG---GACGTT-CA--AA---AATAAATC----GG-ATTTTT-T-CTC---TNA-TGANATTATTAT--TTTCCTCAGGATAACAAAACTTACATAAATGNAAACC-GCTTTCCATTTTGAAACTTT----CTGAAT-AGTTTTATGCGCAACTAGGATGATACGTCCAAAGCAACGAAC-GTTCCATTTACCATAGTAACGCATATGCGGCGCNCGTCG-TTTTACATTCCTTAAAACGTATTAAAACGCCGTNACAATTGCAA--A-------ATTATGGTTGTCCAATAGCTTTAATAATCCGCCAAATTGTAACGTAACGTCATNGTAACATA--A---------CTGCTAAATTTGACGTCATTCGCATTTCAAATAC----AAACGTAAACCGCGTT--TTC-GAAGAC--TGCGATAGA-GATATTTGCATGGA----AA------TATGGCGTCATCGGAAACA---A-AGTTGATGCAGAAAGTAC----CG--------------C------------------GCGA------------------AC-TAGTGTTTAG-GTGG--CATAGGAAG-TTTGCCGACGG---ACG----AGATTCAT----TGGAAGATGATAAGGGGAGAG-GA---CGAAAGTCGAAAATTAGCA-------GT-----GACGTCGTG-ACGTC--------TGTTCGAGATGCACTTGATAACGATCGACGATTGACAGTTA------AGGCATTATCCATCGGGATCGGTGTTA-GT-GTGG-GAACAATTTATACAATTCTAACGGAACAT---ATTT-AAAGATGTCCA----------AGGTACACGCACGGTGGGTGCCCAGGATTTTGAAGGATAACGAAAAAGAGCGACGTGTGAA-GGATTCTAAAGANATTCTTAAGCGATA-AAAAAAGACGGTTATGAATTCCTAGCACACGCATNAAGGNAAAANCGACNAGGGATNCCACTCAAGCATTAC
gi|1 : AGTGGTAGTCTTGCTGATATGTCTTTATTAAATGTAGAAAATAGAAATAAGCAATCATGTCTTAACCACGTTTTTAAA-TTGTAAATGACAAG------TGTCCTTCAT-GTATGAAAGAAAA----------GATAAAGATGTGCACTCTTATATTCTACTAGGGCAAATTTATATAATTTTAGTGTACCCAAATACTATGGGAAAGAGAATGTAATTTTCTTTTACAGTGCAATCAATGATTGGAATGCATTGCCTGCTGACATTAAGAAAATTAATAAAAATTGTCATTTTAAAAGTTCTGTCAAGACCCATTTATTAGACAGAGCTAGGAAAGCATAGTTTATTTATTGCACTTGTTGACTAGATATGGTCAATG-TTTTAATTGTAATATTTTTACTCAAAATTTGTGAT---AA--TGATAA----TATATTTGTAAACGGCAA-ATATATTATGGAAA-CATTCCATGCAGTAACTTCCAAATT-CCTAAGTCTTCAACTTTATATTGTGTTTATTTAATTGCAATTTGTAATGTATACTCTTAGTAA-GTATAATACTAAGGACCTCATTGGAAATAAGTCTTTGGGCTTCA--TGAGCA----AATGTT--TT---TAC--CAACTTTTA-TGTACGAGT---GACGGT-CA--AA---AATAAATC----AG-ACTTTT-C-CTC---TTA-TGAAATTTTTAA--TTTCCTCAGGATAATAAAACTTACATAAATGTAAACC-GCTTTCCAATTCGAAACTTT----CTGAAT-AGTTTTATGCGCAACTAGGATGATACGTCTAAAGCAACACAC-GTTCCATTTACCACAGTAATGTATATGCGACACCAATCA-TTTTACATTCCTTAAAATGTATTAAAACACCGTGACAATTGCAATTATTTATTTATTATGGTTGTCCAAAAGCTTTAATAATCTGCTTAATTGTAACATAACGTCATCGTAACATA--A---------CTAGTAAATTTGACGTCATTTGTATTTCAAATAC----AAACGTAAACTGTGTT--TTC-GAAGAC--TATGATAGA-GATATTTGCATGGA----AA------TATGGCGTCATCGGA---A---A-AGTTGATGTAGAAAGTAC----TA--------------C------------------GCAA------------------AC-TAGTGTTTAG-GTGG--CATAAGAAG-TTTGCTGACAG---ACG----TGATTCAT----TGGAAGATGATAAGGGGAGAG-GA---TGAAAGTTGAATATTAGCA-------AT-----GAAGTTGTG-ACGTC--------TGTTTGAGATGCACTTGATAACGATCGACGATTGACAGTTC------AGGCATTATCCATTTGGATCGGTGTAA-GT-GTGG-GAACAGTTTATACAATTCTAACGGAACATTCAATTTAAAAGATATCCATGAGGTAAAGAGGTACATGCACGTTACGTGCCCAGGATTTTGAAGGATAACAAAATAGAGCAACATGTGAA-GGATTCAAAAGAAATTCTTAAGCGATA-AACAAAAACAGTTATGAATTCCTAGCACACGCATAAAGGTAAAAGTGACAAGGGATACCACTCAAGCATTAC
gi|10 : TAGTTGTCCAATAGCTTTAA-AATCTGCCAAAT
gi|10 : ------------------GTGA------------------AC-TAGCATTTAG-ATGG--CATAGGAAGCTTTG--GACAG---GTG----AGATGCATCGGATGGAAGATGATAAGGAGAGAGTGAGAGTGAAAGTCGAAAATTAGCACAGACATGTTCTCCGACATCTTGAACATC-----------TTGAGATGCACTTGATAACAATCAATGATTGgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacatttctgtaataaggtgaactagcatttagatggcataggaagctttggacaggtgagatgcatcggatggaagatgataaggagagagtgagagtgaaagtcgaaaattagcacagacatgttctccgacatcttgaacatcttgagatgcacttgataacaatcaatgattggaag
gi|11 : tagttgtccaatagctttaaaatctgccaaatgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacatttctgtaataag-TATACCAGG---GACGTT-AA--AA---AATAAATC----GG-ATTTTT-T-TTC---TAA-TGAAATTATTAT--CGTCATCAGGATAACAAAACTAACATGAATGTAAACC-GCTTCCCATTTTGAAACTTT----TTCAAA-ATTGTTATGCACAACTTGGATTATACGTCCAAAGCAACGAAC-GTTCCATTTACCATAGTAACGCATATGCGGCTCACGTCG-TTTTACATTTCTTAAAACGTATTAAAACGCCGTGACAATTGC----A-------ATTATGGTGGTCCAATAACTTTAAAAATgaag
gi|12 : gatagttattgatggGGAGAG-GA---CGAAAGTCGAAAAGTAGCA-------GT-----GACGTCGTG-ACGTC--------TGTTCGAGATGCACTTGATAACGATCGACTGTTGACAGTTACTTTATAGACAGTATCCACCGTAATTGAGGTAA-GT-GTAC-GACCAATTTATAC------AACGAAAC-----ACTG-GAAGATGTCCA----------AGTTACA
gi|16 : gtggatcttggaaacacgccaacggaaaTACGAGG---GATGT--CA--AA---AGTAAACC----AT-ATTTTT-T-CTA---TTA-TGAGATTATT-----TTCTTCAGGATGATACAACTTATGTAAATGAAAACCCGCTTTCCATTTTAAAACTTT----CTGAAT-AAGGTTATGCGCAACTAGGATGATAtccaag
gi|19 : attattgcatattagtttcAGTGTT-AG-GTGG--CACAGGAAA-TTTGCCGACGGTTGACGGTTGAGATTCAT----TGGAAGATGATAAGGGGAGAG-GA---C
gi|2 : gacccaacgtgctatagacagacACGAGT---GACGTT-CA--AA---AATAAATC----GG-ATTTTT-T-CTC---TAA-TGATATTATTAT--TTTCCTCAGGATAATAAAACTTACATAAATGTAAACC-GCTTACCATTTTGAAACTTT----CTGAAT-AGTTTTATGCGCAACTAGGATGACACGTCCAAAGCAACAAAC-GTTCCATTTACCAAAGTAACGCATATGTGGCGCCCGTCG-TTTTACATTCTATAAAACGTATTAAAACGCCATCACAATTGC----A-------ATTATGGTTGCCCAAAAGCTTTAATAATCCGCTAAATTGTAACGTAACATCATAGTAAAATA--A---------CTAGTAAATTTGACGTCATTTGCATTCCAAA----------------------T--TTC-GAAGAC--TGTGATAGA-GATATTTGTATGGA----AA------TATGGCGTCATCGGA---A---A-AGTTG
gi|2 : aaTGGA----AA---------GACGCCCACGGAAACATATA-AGTTGATGTAGAAAGTACTTCGCGATAGTTTTGTAAACC------------------GTGA------------------AC-TAGTGTTTAG-GTGG--CATAAGAAG-TTTGCCGATGG---ACG----AGATTCAT----TGGAAGATGATAAGGGGAGAG-AA---CTTAAGTCGAAAATTAGCA-------AT-----GACGTCGTG-GCGTC--------TGTTCGAGATGCACTTGATAACGATCGACGATTGACAGTTA------AGTCATTATCCATTAGGATCGGTGTTT-GT-GTGG-G-ACAA-TAATACAATTCTAACGGAACATCTAATTTAAAAGATGTCCA----------AGGTACACGCACGGTGGGTGCCCAGGATTTTGAAGGATAACGAAAAAGAGCGACATGTGAA-GGATTCTAAAGAAATTCTTAAGCGAT--AAAAAAGACGGTTATGAATTCCTAGCACACGCATTAAGGAAAAATCGACCAGGGATTCCACTCAAGCATTACgaaattagagcaaaaacaaagttttgcgtgactcttggaaagacgcccacggaaacatataagttgatgtagaaagtacttcgcgatagttttgtaaaccgtgaactagtgtttaggtggcataagaagtttgccgatggacgagattcattggaagatgataaggggagagaacttaagtcgaaaattagcaatgacgtcgtggcgtctgttcgagatgcacttgataacgatcgacgattgacagttaagtcattatccattaggatcggtgtttgtgtgggacaataatacaattctaacggaacatctaatttaaaagatgtccaaggtacacgcacggtgggtgcccaggattttgaaggataacgaaaaagagcgacatgtgaaggattctaaagaaattcttaagcgataaaaaagacggttatgaattcctagcacacgcattaaggaaaaatcgaccagggattccactcaagcattac
gi|20 : aaacgagtgacgttcaaaaataaatcggattttttctctaatgatattattattttcctcaggataataaaacttacataaatgtaaaccgcttaccattttgaaactttctgaatagttttatgcgcaactaggatgacacgtccaaagcaacaaacgttccatttaccaaagtaacgcatatgtggcgcccgtcgttttacattctataaaacgtattaaaacgccatcacaattgcaattatggttgcccaaaagctttaataatccgctaaattgtaacgtaacatcatagtaaaataactagtaaatttgacgtcatttgcattccaaatttcgaagactgtgatagagatatttgtatggaaatatggcgtcatcggaaaagttggaaattagagcaaaaacaaagttttgcgtgactctGTACACGCACAGTAGGTTTCCCTGCCTTTGAAGGAAAATGGAAAAGAGCGATGTGTGAATGAATTCT-GAGACA
gi|21 : GGTGTTACGTAGTAGCGAACAATTTATATAAGTCTTACAGAACAT----TTT-GAAGTTTTCAA----------AGGCACAg
gi|3 : ACGAGG---GACGTT-CA--AA---A-TAAATC----GG-ACTTTT-T-CTC---TAA-TGAAATTATTTT--TTTCCTCAGGATAACAAA-CTTACATAAATAGTAACA-GCTTTCCATTTTGAAACTTT----CTGGAT-AGTTTAATGCGGAACTAGAATGATGGGTCTAAAGCAACGAAC-GTCCCATTTACCATAGTAACGCATATTCGGCGCACGACA-TTTTAAATTCCTTAAAACGTACTAAAACGCCGTTACAAATGCAA--A---------TATGGTTGTCCAATAGCTTTAATAATCCGTCAAATTGTAACATAACGTCCTAGCAACATC--A---------CTACTAAATTTGACGTCATTCGCATTTCAAATAC----AAACGAAAACTGCGTT--TTA-AAAGAC--TGTGATAGA-GATATTTCCATAAA----AA------TATCGCGTCATCGGA---A---A-AGTTG-----GAAATTA------G--------------G------------------GCAA------------------ACATAAAGTTTTGCGTGGATCTTGGAAAG--ACGCCAACGG---A
gi|3 : TGGA----AA---------GACGCCAACGGAAACAGAGA-AGTTGATGCAGAAAGTAC----CA--------------CAAAACAGTTTTGTAAAACGTGA------------------AC-TAGTGTTAAC-GTGG--CATAAGAAA-TTTGCCTACGG---ACG----CGATTCAT----TTGAAGATGATAAGGGGAGAG-GA---CGAATGTCGAAAATTAGCA-------GT-----GACGTCCTG-ACGTCCTGACGTTTGTTCGTGATACACTTGATAACGATCGGCGATTGACAGTTA------AGGCATTATCCATCAGGATCGGTGTTA-GT-GTGG-GAACAATTTATACAATTCTAACGGAAC-----ATTT-AAAGATGTTCA----------AGGTACACGCACGGTGGaacagagaagttgatgcagaaagtaccacaaaacagttttgtaaaacgtgaactagtgttaacgtggcataagaaatttgcctacggacgcgattcatttgaagatgataaggggagaggacgaatgtcgaaaattagcagtgacgtcctgacgtcctgacgtttgttcgtgatacacttgataacgatcggcgattgacagttaaggcattatccatcaggatcggtgttagtgtgggaacaatttatacaattctaacggaacatttaaagatgttcaaggtacacgcacggtgg
gi|4 : acgagggacgttcaaaataaatcggactttttctctaatgaaattatttttttcctcaggataacaaacttacataaatagtaacagctttccattttgaaactttctggatagtttaatgcggaactagaatgatgggtctaaagcaacgaacgtcccatttaccatagtaacgcatattcggcgcacgacattttaaattccttaaaacgtactaaaacgccgttacaaatgcaaatatggttgtccaatagctttaataatccgtcaaattgtaacataacgtcctagcaacatcactactaaatttgacgtcattcgcatttcaaatacaaacgaaaactgcgttttaaaagactgtgatagagatatttccataaaaatatcgcgtcatcggaaaagttggaaattagggcaaacataaagttttgcgtggatctAATGGTAGTCTTGCTGATATGTCTTTAT-AAATGTAGAAAATAGAAATAAGCAATTATGTCTTAAGCATGTTTTTAAAATTGTAAATGACAAGACTTAGTGTCCTTCATTATATGAAAGAAAATTTAGTTTTTGTTAAAGATGTGCACTCTTAT--TCTACTGGGGCAAATTTATATAATTTTAGTGTACCCAAATATCATGGGAAAGAGAATATAACCTTCTTTTACAGTGCAATCAATGATTGGAATACATTGCCTGCTAACATTAAGAAAATTAATAAAATTAGTCACTTTAAAAGTTCTGTCAAGACCAGTTTATTAGACAGAGCTAGGAAAGCATAGTTTATTTGTTGCACTTGTAGACTAAATATACTCATTGTTTTTAATTGTAATATTTTTATACAAAATTTATGGTAA-AAAGTAA-TACATGTATATTTGTAAAC-----------------------TTCCA-------------AAT-T-CCAAAGTCTTCAACTTTATATTATGTTTATTTAATT-TAA-TTG
gi|5 : cttagattttaaaattagaaaaatatttatgttctgctctgatacagtgtcatttagactattcatgttcgtctttgtacccgagtttaaacaaagggttaagatctgtcaaaataaaattgttagattcataattaatgatatgggacctagggaaggtatcaatTTAGTATACGAGAAATGACGTT-CA--AA---AATAAATC----AT-ATTTTT-T-CTT---GTA-TCATATTATTAT--TTACTTCAGGATAACAATACTTACATCAATGAAAACC-GCTTTTCATTTTG---------------------TTTATTCACTAGTAGTATGATATGTTGAAAGCAGTGAAT-GTCCCATTTGTAATAGTAACGCATATCCGACATTTGTCGTTTTTGCATGTATT--AATGTATTAATACTCTATGATAATTGC----A-------TTTATGGTTGT-CACTAACTTAAA---------AAAATGTGAGTTAACGTCATTATAGCATACGAACATCAAATCTGCTAAATTTGACGTCATCCGCATTTCAAATACAAAAAAAAGAAAACCGCGTT--TTTAGAAGACAATGCTATAAACGCTA-TTGCATGCA----AA------TATGACCTAAT---ATGCG---ATAGTTT-T-------GTAC----AA--------------C------------------GTGA------------------AC-TAGTGATTAG-GTAG--CATAAGAAG-TTTGCCGACGG---GCT----AGAGTAAT----AAGAAGATGACAAG
gi|6 : tttaacacgtgtattacatttgtggaatagaaaatagatgtgcggctcttatttggCATA--A---------CTGCTAAATTTGACGTCATTCGCATTTCAAATAC----AAACGTAAACTGCGTT--TTC-GAAGAC--TGTGATAGA-GATATTTGCATGAA----AA------TATGGCGTCATCGG-AAC------AGTTG-----GAAATTA------G--------------G------------------GCAA------------------ACATAAAGTTTTGCGTGGATCTTAGAAAG-taaaagaaataacagtgattagca
gi|6 : TTTGCGTGGATCTTAG------AAAGACGCCACCAGAAACATATA-CGTTGATGCAAAAAGTAC----CA--------------C------------------GCAACCGTTTTGTTAAACGTAAAC-TAGTTTTAAG-GTGG--CATACGAAG-TTTGCCGACGG---ACG----AGATTCAT----TTGAAGATGATAAGGGGAGAG-GA---CGAAAATCGAAAATTAGCA-------GT-----GACGTCGTG-ACGTC--------TGTTCGAGATGCTCTTGATAACGATCGACGATTGACAGTTA------AGGTATTATCCATAAGGATCGGTGTTA-GT-GTGG-GAAC-ATTTATACAATTCTAACGGAAC-----ATTT-AAAGAGGTCCA----------AGGTACACGCATAGCGTGTGCACAGGATTTTGAAAGATAACGAAAAAGAGCGACGTGTGAA-GAATTCT-AAGACATTTCTTAGCGATACAAAAAAGACGGAGATGAacgccaccagaaacatatacgttgatgcaaaaagtaccacgcaaccgttttgttaaacgtaaactagttttaaggtggcatacgaagtttgccgacggacgagattcatttgaagatgataaggggagaggacgaaaatcgaaaattagcagtgacgtcgtgacgtctgttcgagatgctcttgataacgatcgacgattgacagttaaggtattatccataaggatcggtgttagtgtgggaacatttatacaattctaacggaacatttaaagaggtccaaggtacacgcatagcgtgtgcacaggattttgaaagataacgaaaaagagcgacgtgtgaagaattctaagacatttcttagcgatacaaaaaagacggagatgatt
gi|7 : cataactgctaaatttgacgtcattcgcatttcaaatacaaacgtaaactgcgttttcgaagactgtgatagagatatttgcatgaaaatatggcgtcatcggaacagttggaaattagggcaaacataaagtAATTAAATACGTAAA-----A-T-TACGAGG---GATGTT-AA--AA---AAAAAATC----GT-ACTTTT-T--TC---TTA-TGATATTATTCT--TTTCCTCATGATAACACAGTTTACTTATATAAAAAAC-GCTTTCCATTTTGAAACTTTGTTTCTGAATTAGTTTAA-GCACAGCTAGGATGAT-----TAAAGCAACGAAC-GTT------ACCATAGTAACGCATATGC------------------ATTCCTAAAAACGTATTTAAACGCTGTCACAGTTGTAA-----------TTATGGTTGTCCAATAGCTTTAA-AATCCGAAAAACTCAAACGTAACGTCATCGTTACATA--A---------CTGCTTAATTTGACGTCATTCGCGATACAAATAC----AAACGTAAAACCCGTTTGTTG-GAAGAC--TGCGA-A------ATTTACATAAA----AATACTAGTATGGCGTCATCGGA---A---A-AGTTGtt
gi|8 : tttaatgtaacacatatgcttaatgtaaaacgtgcgttataagTTAATTGTAATATGTTTGTGCTAAATTCGTGATAATAA--TAA-AAA---TATATTTGTAAACGGC-ATATATATCCTGG-AATCATTCCATGTGATAACTTCCAAA-TGCCA--GTCTTCAACTTTATATTATTTTCGTTTGATT-CAA-TTGAAATTTGT-------GTAATGTATAGTACCAAGGACTTCATTGGAAATAACCATTCCAGCTTTAATTG-GCAATCGAACGTTAATTAA-TAC--ACACTTTTA-TGTATGA-C---AATGTTGCATTAATTGAATAATTCTTTGAG-ATTTTT-TACTCATTTCATTTAAGTTACTATAGTTTCTATAGCATAgaagttgacaaaacgccactataaacttataaaatgatgcaaaagggaccacgcaacagttctgtgaa
gi|9 : ctg--AAAATTGTG-TGTACGAGG---GACGTT-CA--AA---AATAAAAC----GGTATTTTTCT-CTC---CGA-TGAGATTATTAT--TATTCTCAGGATAACACAACATACATAGATGAAAACC-GCTTTCCAGTTTGAAACTGT----CTGAAT-AAGTTAATACTCAACTAGTATG-T-CAACCAAA--AGCGTACTGCTCCAttttttgtgatagatcagtaactttttgactttggattctgccaaaacaat
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AAAACCAAGGATATTCGATTGACAGTTAAAGTAAATAGTAGCTCTGACAATTATATCATACTAATTTCTCTGAGGTTAATTGTTAGATGGGAATAGCTTTAATTGATACAGTTATTCATTAGTTAACACCACAGTCAGTTTTTTTGTATCTAGAAACGAGATAAATGTTTCATAAATGATGAGCATGTGAA
Unaligned ( gi|14 ): GAAAACCAAGGATATTCGATTGACAGTTAAAGTAAATAGTAGCTCTGACAATTATATCATACTAATTTCTCTGAGGTTAATTGTTAGATGGGAATAGCTTTAATTGATACAGTTATTCATTAGTTAACACCACAGTCAGTTTTTTTGTATCTAGAAACGAGATAAATGTTTCATAAATGATGAGCATGTGA
Unaligned ( gi|15 ): AAGATTCGACAACATTTTTATATCAAAATATACTCTACAAATCAATAAAGTTCACTTCTTTGAGATTTGCCATTCATTTCATTTAAGTAACCATAGTTTTCTATAGAATATTTTATTGTGATAGATCATTACTTTTTTTACACTGGATTTTGCCAAAAACAGTAG
Unaligned ( gi|17 ): ATGTTGCATTGATTGAACACTTCTTTGAGATTTTCCACTCATATTCATTTAAATTACCATAATTTATATAGGATATCTTATTGTGATAAATCAGTAAGTTTTGACTTTGGATTCTGCCAAAA
Unaligned ( gi|18 ): CCATTTACTATTTAGTACATTATCATTTATTAACATCGGCTACCACAGTTTCTATAGTAATTTTGATTGTGAAAGATCAGTAACTTTTTTAATTTGGATTCTGCCAAAAACAATA
Unaligned ( gi|22 ): GAAAAAAAATCTTCTTACTTATGCGATGTTCATGACTTTTGTGT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 222222 1 4444444444 11 1 2222222 4444444 777777777777777777777 11111 111 1 1 3333333 1 11 1 2222 111 11 1111 5555555555555 1 222222222222 1111 1111111 4444444 22222 00000000000000000000000000000000000000000000000000000000000000 1 11 1111 1111 111 22222222222222 22222222 222222 44444 1 2222222222 1 1 22
lowQualScore : 5 1 5 999999 5 2222222222 1 88 1 1 2 1 1 1 5 1 0 0000000 5555555 333333333333333333333 66666 777 7 3 3 1 1 2222222 5 1 1 2 88 5 3333 7 999 33 8 0 6 3 7777 4 66 777 9999 4 4 4 777 1 4 1 2 66 1 5 0000 5 0 0 5 0 5 4444 6 1 6666666666666 5 44 1 1 666666666666 4444 3 2 99 77 99 0 1 6 9999 7777777 1111111 4 00000 00000000000000000000000000000000000000000000000000000000000000 0 2 8 22 4 888 2222 2222 5 000 44444444444444 6 44444444 333333 66 6 6 6 11111 3 9999999999 0 5 1 00 1 1 1 1 1
lowQualScore : . . . ...... . .......... . .. . . . . . . . . . ....... ....... ..................... ..... ... . . . . . ....... . . . . .. . .... . ... .. . . . . .... . .. ... .... . . . ... . . . . .. . . .... . . . . . . .... . . ............. . .. . . ............ .... . . .. .. .. . . . .... ....... ....... . ..... .............................................................. . . . .. . ... .... .... . ... .............. . ........ ...... .. . . . ..... . .......... . . . .. . . . . .
lowQualScore : 5 0 5 555555 5 0000000000 0 55 0 0 5 0 0 0 5 0 7 0000000 7777777 777777777777777777777 77777 777 3 3 3 0 0 5555555 5 0 0 5 55 5 5555 3 777 88 8 6 7 7 9999 4 11 888 4444 4 4 4 888 0 4 0 0 11 0 0 6666 0 2 8 1 4 7 8888 7 0 0000000000000 7 77 4 0 888888888888 2222 7 2 22 77 22 7 0 7 4444 6666666 6666666 4 77777 00000000000000000000000000000000000000000000000000000000000000 0 2 9 22 4 888 1111 1111 7 000 77777777777777 7 22222222 000000 00 7 7 7 88888 3 2222222222 0 5 0 77 0 0 0 0 0
consensus : AGTGGTAGTCTTGCTGATATGTCTTTATTAAATGTAGAAAATAGAAATAAGCAATCATGTCTTAANCACGTTTTTAAAATTGTAAATGACAAGACTTAGTGTCCTTCATTGTATGAAAGAAAATTTAGTTTTTGNTAAAGATGTGCACTCTTATATTCTACTGGGGCAAATTTATATAATTTTAGTGTACCCAAATACCATGGGAAAGAGAATGTAACCTTCTTTTACAGTGCAATCAATGATTGGAATGCATTGCCTGCTGACATTAAGAAAATTAATAAAANTNGTCACTTTAAAAGTTCTGTCAAGACCCGTTTATTAGACAGAGCTAGGAAAGCATAGTTTATTTGTTGCACTTGTNGACTAGATATGNTCANTGTTTTTAATTGTAATATTTTTATNCAAAATTCGTGATAA-AA--TAA-AA----TATATTTGTAAACGGC-A-ATATATC-TGG-AA-CATTCCATGCGGTAACTTCCAAA-T-CCAAAGTCTTCAACTTTATATTATGTTTATTTAATT-CAA-TTGNAATNTGTACTCTTAGTAATGTATAGTACCAAGGACCTCATTGGAAATAANCNTTCCGGCTTCAATTGAGCAATCGAACGTTAATTAA-TAC--AAACTTTTA-TGTACGAGG---GACGTT-CA--AA---AATAAATC----GG-ATTTTT-T-CTC---TNA-TGANATTATTAT--TTTCCTCAGGATAACAAAACTTACATAAATGNAAACC-GCTTTCCATTTTGAAACTTT----CTGAAT-AGTTTTATGCGCAACTAGGATGATACGTCCAAAGCAACGAAC-GTTCCATTTACCATAGTAACGCATATGCGGCGCNCGTCG-TTTTACATTCCTTAAAACGTATTAAAACGCCGTNACAATTGCAA--A-------ATTATGGTTGTCCAATAGCTTTAATAATCCGCCAAATTGTAACGTAACGTCATNGTAACATA--A---------CTGCTAAATTTGACGTCATTCGCATTTCAAATAC----AAACGTAAACCGCGTT--TTC-GAAGAC--TGCGATAGA-GATATTTGCATGGA----AA------TATGGCGTCATCGGAAACA---A-AGTTGATGCAGAAAGTAC----CG--------------C------------------GCGA------------------AC-TAGTGTTTAG-GTGG--CATAGGAAG-TTTGCCGACGG---ACG----AGATTCAT----TGGAAGATGATAAGGGGAGAG-GA---CGAAAGTCGAAAATTAGCA-------GT-----GACGTCGTG-ACGTC--------TGTTCGAGATGCACTTGATAACGATCGACGATTGACAGTTA------AGGCATTATCCATCGGGATCGGTGTTA-GT-GTGG-GAACAATTTATACAATTCTAACGGAACAT---ATTT-AAAGATGTCCA----------AGGTACACGCACGGTGGGTGCCCAGGATTTTGAAGGATAACGAAAAAGAGCGACGTGTGAA-GGATTCTAAAGANATTCTTAAGCGATA-AAAAAAGACGGTTATGAATTCCTAGCACACGCATNAAGGNAAAANCGACNAGGGATNCCACTCAAGCATTAC
Reference ( family-3607 ) : AGTGGTAGTCTTGCTGATATGTCTTTATTAAATGTAGAAAATAGAAATAAGCAATCATGTCTTAANCACGTTTTTAAAATTGTAAATGACAAGACTTAGTGTCCTTCATTGTATGAAAGAAAATTTAGTTTTTGNTAAAGATGTGCACTCTTATATTCTACTGGGGCAAATTTATATAATTTTAGTGTACCCAAATACCATGGGAAAGAGAATGTAACCTTCTTTTACAGTGCAATCAATGATTGGAATGCATTGCCTGCTGACATTAAGAAAATTAATAAAANTNGTCACTTTAAAAGTTCTGTCAAGACCCGTTTATTAGACAGAGCTAGGAAAGCATAGTTTATTTGTTGCACTTGTNGACTAGATATGNTCANTGTTTTTAATTGTAATATTTTTATNCAAAATTCGTGATAA-AA--TAA-AA----TATATTTGTAAACGGC-A-ATATATC-TGG-AA-CATTCCATGCGGTAACTTCCAAA-T-CCAAAGTCTTCAACTTTATATTATGTTTATTTAATT-CAA-TTGNAATNTGTACTCTTAGTAATGTATAGTACCAAGGACCTCATTGGAAATAANCNTTCCGGCTTCAATTGAGCAATCGAACGTTAATTAA-TAC--AAACTTTTA-TGTACGAGG---GACGTT-CA--AA---AATAAATC----GG-ATTTTT-T-CTC---TNA-TGANATTATTAT--TTTCCTCAGGATAACAAAACTTACATAAATGNAAACC-GCTTTCCATTTTGAAACTTT----CTGAAT-AGTTTTATGCGCAACTAGGATGATACGTCCAAAGCAACGAAC-GTTCCATTTACCATAGTAACGCATATGCGGCGCNCGTCG-TTTTACATTCCTTAAAACGTATTAAAACGCCGTNACAATTGCAA--A-------ATTATGGTTGTCCAATAGCTTTAATAATCCGCCAAATTGTAACGTAACGTCATNGTAACATA--A---------CTGCTAAATTTGACGTCATTCGCATTTCAAATAC----AAACGTAAACCGCGTT--TTC-GAAGAC--TGCGATAGA-GATATTTGCATGGA----AA------TATGGCGTCATCGGAAACA---A-AGTTGATGCAGAAAGTAC----CG--------------C------------------GCGA------------------AC-TAGTGTTTAG-GTGG--CATAGGAAG-TTTGCCGACGG---ACG----AGATTCAT----TGGAAGATGATAAGGGGAGAG-GA---CGAAAGTCGAAAATTAGCA-------GT-----GACGTCGTG-ACGTC--------TGTTCGAGATGCACTTGATAACGATCGACGATTGACAGTTA------AGGCATTATCCATCGGGATCGGTGTTA-GT-GTGG-GAACAATTTATACAATTCTAACGGAACAT---ATTT-AAAGATGTCCA----------AGGTACACGCACGGTGGGTGCCCAGGATTTTGAAGGATAACGAAAAAGAGCGACGTGTGAA-GGATTCTAAAGANATTCTTAAGCGATA-AAAAAAGACGGTTATGAATTCCTAGCACACGCATNAAGGNAAAANCGACNAGGGATNCCACTCAAGCATTAC
gi|1 : AGTGGTAGTCTTGCTGATATGTCTTTATTAAATGTAGAAAATAGAAATAAGCAATCATGTCTTAACCACGTTTTTAAA-TTGTAAATGACAAG------TGTCCTTCAT-GTATGAAAGAAAA----------GATAAAGATGTGCACTCTTATATTCTACTAGGGCAAATTTATATAATTTTAGTGTACCCAAATACTATGGGAAAGAGAATGTAATTTTCTTTTACAGTGCAATCAATGATTGGAATGCATTGCCTGCTGACATTAAGAAAATTAATAAAAATTGTCATTTTAAAAGTTCTGTCAAGACCCATTTATTAGACAGAGCTAGGAAAGCATAGTTTATTTATTGCACTTGTTGACTAGATATGGTCAATG-TTTTAATTGTAATATTTTTACTCAAAATTTGTGAT---AA--TGATAA----TATATTTGTAAACGGCAA-ATATATTATGGAAA-CATTCCATGCAGTAACTTCCAAATT-CCTAAGTCTTCAACTTTATATTGTGTTTATTTAATTGCAATTTGTAATGTATACTCTTAGTAA-GTATAATACTAAGGACCTCATTGGAAATAAGTCTTTGGGCTTCA--TGAGCA----AATGTT--TT---TAC--CAACTTTTA-TGTACGAGT---GACGGT-CA--AA---AATAAATC----AG-ACTTTT-C-CTC---TTA-TGAAATTTTTAA--TTTCCTCAGGATAATAAAACTTACATAAATGTAAACC-GCTTTCCAATTCGAAACTTT----CTGAAT-AGTTTTATGCGCAACTAGGATGATACGTCTAAAGCAACACAC-GTTCCATTTACCACAGTAATGTATATGCGACACCAATCA-TTTTACATTCCTTAAAATGTATTAAAACACCGTGACAATTGCAATTATTTATTTATTATGGTTGTCCAAAAGCTTTAATAATCTGCTTAATTGTAACATAACGTCATCGTAACATA--A---------CTAGTAAATTTGACGTCATTTGTATTTCAAATAC----AAACGTAAACTGTGTT--TTC-GAAGAC--TATGATAGA-GATATTTGCATGGA----AA------TATGGCGTCATCGGA---A---A-AGTTGATGTAGAAAGTAC----TA--------------C------------------GCAA------------------AC-TAGTGTTTAG-GTGG--CATAAGAAG-TTTGCTGACAG---ACG----TGATTCAT----TGGAAGATGATAAGGGGAGAG-GA---TGAAAGTTGAATATTAGCA-------AT-----GAAGTTGTG-ACGTC--------TGTTTGAGATGCACTTGATAACGATCGACGATTGACAGTTC------AGGCATTATCCATTTGGATCGGTGTAA-GT-GTGG-GAACAGTTTATACAATTCTAACGGAACATTCAATTTAAAAGATATCCATGAGGTAAAGAGGTACATGCACGTTACGTGCCCAGGATTTTGAAGGATAACAAAATAGAGCAACATGTGAA-GGATTCAAAAGAAATTCTTAAGCGATA-AACAAAAACAGTTATGAATTCCTAGCACACGCATAAAGGTAAAAGTGACAAGGGATACCACTCAAGCATTAC
gi|10 : TAGTTGTCCAATAGCTTTAA-AATCTGCCAAAT
gi|10 : ------------------GTGA------------------AC-TAGCATTTAG-ATGG--CATAGGAAGCTTTG--GACAG---GTG----AGATGCATCGGATGGAAGATGATAAGGAGAGAGTGAGAGTGAAAGTCGAAAATTAGCACAGACATGTTCTCCGACATCTTGAACATC-----------TTGAGATGCACTTGATAACAATCAATGATTGgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacatttctgtaataaggtgaactagcatttagatggcataggaagctttggacaggtgagatgcatcggatggaagatgataaggagagagtgagagtgaaagtcgaaaattagcacagacatgttctccgacatcttgaacatcttgagatgcacttgataacaatcaatgattggaag
gi|11 : tagttgtccaatagctttaaaatctgccaaatgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacatttctgtaataag-TATACCAGG---GACGTT-AA--AA---AATAAATC----GG-ATTTTT-T-TTC---TAA-TGAAATTATTAT--CGTCATCAGGATAACAAAACTAACATGAATGTAAACC-GCTTCCCATTTTGAAACTTT----TTCAAA-ATTGTTATGCACAACTTGGATTATACGTCCAAAGCAACGAAC-GTTCCATTTACCATAGTAACGCATATGCGGCTCACGTCG-TTTTACATTTCTTAAAACGTATTAAAACGCCGTGACAATTGC----A-------ATTATGGTGGTCCAATAACTTTAAAAATgaag
gi|12 : gatagttattgatggGGAGAG-GA---CGAAAGTCGAAAAGTAGCA-------GT-----GACGTCGTG-ACGTC--------TGTTCGAGATGCACTTGATAACGATCGACTGTTGACAGTTACTTTATAGACAGTATCCACCGTAATTGAGGTAA-GT-GTAC-GACCAATTTATAC------AACGAAAC-----ACTG-GAAGATGTCCA----------AGTTACA
gi|16 : gtggatcttggaaacacgccaacggaaaTACGAGG---GATGT--CA--AA---AGTAAACC----AT-ATTTTT-T-CTA---TTA-TGAGATTATT-----TTCTTCAGGATGATACAACTTATGTAAATGAAAACCCGCTTTCCATTTTAAAACTTT----CTGAAT-AAGGTTATGCGCAACTAGGATGATAtccaag
gi|19 : attattgcatattagtttcAGTGTT-AG-GTGG--CACAGGAAA-TTTGCCGACGGTTGACGGTTGAGATTCAT----TGGAAGATGATAAGGGGAGAG-GA---C
gi|2 : gacccaacgtgctatagacagacACGAGT---GACGTT-CA--AA---AATAAATC----GG-ATTTTT-T-CTC---TAA-TGATATTATTAT--TTTCCTCAGGATAATAAAACTTACATAAATGTAAACC-GCTTACCATTTTGAAACTTT----CTGAAT-AGTTTTATGCGCAACTAGGATGACACGTCCAAAGCAACAAAC-GTTCCATTTACCAAAGTAACGCATATGTGGCGCCCGTCG-TTTTACATTCTATAAAACGTATTAAAACGCCATCACAATTGC----A-------ATTATGGTTGCCCAAAAGCTTTAATAATCCGCTAAATTGTAACGTAACATCATAGTAAAATA--A---------CTAGTAAATTTGACGTCATTTGCATTCCAAA----------------------T--TTC-GAAGAC--TGTGATAGA-GATATTTGTATGGA----AA------TATGGCGTCATCGGA---A---A-AGTTG
gi|2 : aaTGGA----AA---------GACGCCCACGGAAACATATA-AGTTGATGTAGAAAGTACTTCGCGATAGTTTTGTAAACC------------------GTGA------------------AC-TAGTGTTTAG-GTGG--CATAAGAAG-TTTGCCGATGG---ACG----AGATTCAT----TGGAAGATGATAAGGGGAGAG-AA---CTTAAGTCGAAAATTAGCA-------AT-----GACGTCGTG-GCGTC--------TGTTCGAGATGCACTTGATAACGATCGACGATTGACAGTTA------AGTCATTATCCATTAGGATCGGTGTTT-GT-GTGG-G-ACAA-TAATACAATTCTAACGGAACATCTAATTTAAAAGATGTCCA----------AGGTACACGCACGGTGGGTGCCCAGGATTTTGAAGGATAACGAAAAAGAGCGACATGTGAA-GGATTCTAAAGAAATTCTTAAGCGAT--AAAAAAGACGGTTATGAATTCCTAGCACACGCATTAAGGAAAAATCGACCAGGGATTCCACTCAAGCATTACgaaattagagcaaaaacaaagttttgcgtgactcttggaaagacgcccacggaaacatataagttgatgtagaaagtacttcgcgatagttttgtaaaccgtgaactagtgtttaggtggcataagaagtttgccgatggacgagattcattggaagatgataaggggagagaacttaagtcgaaaattagcaatgacgtcgtggcgtctgttcgagatgcacttgataacgatcgacgattgacagttaagtcattatccattaggatcggtgtttgtgtgggacaataatacaattctaacggaacatctaatttaaaagatgtccaaggtacacgcacggtgggtgcccaggattttgaaggataacgaaaaagagcgacatgtgaaggattctaaagaaattcttaagcgataaaaaagacggttatgaattcctagcacacgcattaaggaaaaatcgaccagggattccactcaagcattac
gi|20 : aaacgagtgacgttcaaaaataaatcggattttttctctaatgatattattattttcctcaggataataaaacttacataaatgtaaaccgcttaccattttgaaactttctgaatagttttatgcgcaactaggatgacacgtccaaagcaacaaacgttccatttaccaaagtaacgcatatgtggcgcccgtcgttttacattctataaaacgtattaaaacgccatcacaattgcaattatggttgcccaaaagctttaataatccgctaaattgtaacgtaacatcatagtaaaataactagtaaatttgacgtcatttgcattccaaatttcgaagactgtgatagagatatttgtatggaaatatggcgtcatcggaaaagttggaaattagagcaaaaacaaagttttgcgtgactctGTACACGCACAGTAGGTTTCCCTGCCTTTGAAGGAAAATGGAAAAGAGCGATGTGTGAATGAATTCT-GAGACA
gi|21 : GGTGTTACGTAGTAGCGAACAATTTATATAAGTCTTACAGAACAT----TTT-GAAGTTTTCAA----------AGGCACAg
gi|3 : ACGAGG---GACGTT-CA--AA---A-TAAATC----GG-ACTTTT-T-CTC---TAA-TGAAATTATTTT--TTTCCTCAGGATAACAAA-CTTACATAAATAGTAACA-GCTTTCCATTTTGAAACTTT----CTGGAT-AGTTTAATGCGGAACTAGAATGATGGGTCTAAAGCAACGAAC-GTCCCATTTACCATAGTAACGCATATTCGGCGCACGACA-TTTTAAATTCCTTAAAACGTACTAAAACGCCGTTACAAATGCAA--A---------TATGGTTGTCCAATAGCTTTAATAATCCGTCAAATTGTAACATAACGTCCTAGCAACATC--A---------CTACTAAATTTGACGTCATTCGCATTTCAAATAC----AAACGAAAACTGCGTT--TTA-AAAGAC--TGTGATAGA-GATATTTCCATAAA----AA------TATCGCGTCATCGGA---A---A-AGTTG-----GAAATTA------G--------------G------------------GCAA------------------ACATAAAGTTTTGCGTGGATCTTGGAAAG--ACGCCAACGG---A
gi|3 : TGGA----AA---------GACGCCAACGGAAACAGAGA-AGTTGATGCAGAAAGTAC----CA--------------CAAAACAGTTTTGTAAAACGTGA------------------AC-TAGTGTTAAC-GTGG--CATAAGAAA-TTTGCCTACGG---ACG----CGATTCAT----TTGAAGATGATAAGGGGAGAG-GA---CGAATGTCGAAAATTAGCA-------GT-----GACGTCCTG-ACGTCCTGACGTTTGTTCGTGATACACTTGATAACGATCGGCGATTGACAGTTA------AGGCATTATCCATCAGGATCGGTGTTA-GT-GTGG-GAACAATTTATACAATTCTAACGGAAC-----ATTT-AAAGATGTTCA----------AGGTACACGCACGGTGGaacagagaagttgatgcagaaagtaccacaaaacagttttgtaaaacgtgaactagtgttaacgtggcataagaaatttgcctacggacgcgattcatttgaagatgataaggggagaggacgaatgtcgaaaattagcagtgacgtcctgacgtcctgacgtttgttcgtgatacacttgataacgatcggcgattgacagttaaggcattatccatcaggatcggtgttagtgtgggaacaatttatacaattctaacggaacatttaaagatgttcaaggtacacgcacggtgg
gi|4 : acgagggacgttcaaaataaatcggactttttctctaatgaaattatttttttcctcaggataacaaacttacataaatagtaacagctttccattttgaaactttctggatagtttaatgcggaactagaatgatgggtctaaagcaacgaacgtcccatttaccatagtaacgcatattcggcgcacgacattttaaattccttaaaacgtactaaaacgccgttacaaatgcaaatatggttgtccaatagctttaataatccgtcaaattgtaacataacgtcctagcaacatcactactaaatttgacgtcattcgcatttcaaatacaaacgaaaactgcgttttaaaagactgtgatagagatatttccataaaaatatcgcgtcatcggaaaagttggaaattagggcaaacataaagttttgcgtggatctAATGGTAGTCTTGCTGATATGTCTTTAT-AAATGTAGAAAATAGAAATAAGCAATTATGTCTTAAGCATGTTTTTAAAATTGTAAATGACAAGACTTAGTGTCCTTCATTATATGAAAGAAAATTTAGTTTTTGTTAAAGATGTGCACTCTTAT--TCTACTGGGGCAAATTTATATAATTTTAGTGTACCCAAATATCATGGGAAAGAGAATATAACCTTCTTTTACAGTGCAATCAATGATTGGAATACATTGCCTGCTAACATTAAGAAAATTAATAAAATTAGTCACTTTAAAAGTTCTGTCAAGACCAGTTTATTAGACAGAGCTAGGAAAGCATAGTTTATTTGTTGCACTTGTAGACTAAATATACTCATTGTTTTTAATTGTAATATTTTTATACAAAATTTATGGTAA-AAAGTAA-TACATGTATATTTGTAAAC-----------------------TTCCA-------------AAT-T-CCAAAGTCTTCAACTTTATATTATGTTTATTTAATT-TAA-TTG
gi|5 : cttagattttaaaattagaaaaatatttatgttctgctctgatacagtgtcatttagactattcatgttcgtctttgtacccgagtttaaacaaagggttaagatctgtcaaaataaaattgttagattcataattaatgatatgggacctagggaaggtatcaatTTAGTATACGAGAAATGACGTT-CA--AA---AATAAATC----AT-ATTTTT-T-CTT---GTA-TCATATTATTAT--TTACTTCAGGATAACAATACTTACATCAATGAAAACC-GCTTTTCATTTTG---------------------TTTATTCACTAGTAGTATGATATGTTGAAAGCAGTGAAT-GTCCCATTTGTAATAGTAACGCATATCCGACATTTGTCGTTTTTGCATGTATT--AATGTATTAATACTCTATGATAATTGC----A-------TTTATGGTTGT-CACTAACTTAAA---------AAAATGTGAGTTAACGTCATTATAGCATACGAACATCAAATCTGCTAAATTTGACGTCATCCGCATTTCAAATACAAAAAAAAGAAAACCGCGTT--TTTAGAAGACAATGCTATAAACGCTA-TTGCATGCA----AA------TATGACCTAAT---ATGCG---ATAGTTT-T-------GTAC----AA--------------C------------------GTGA------------------AC-TAGTGATTAG-GTAG--CATAAGAAG-TTTGCCGACGG---GCT----AGAGTAAT----AAGAAGATGACAAG
gi|6 : tttaacacgtgtattacatttgtggaatagaaaatagatgtgcggctcttatttggCATA--A---------CTGCTAAATTTGACGTCATTCGCATTTCAAATAC----AAACGTAAACTGCGTT--TTC-GAAGAC--TGTGATAGA-GATATTTGCATGAA----AA------TATGGCGTCATCGG-AAC------AGTTG-----GAAATTA------G--------------G------------------GCAA------------------ACATAAAGTTTTGCGTGGATCTTAGAAAG-taaaagaaataacagtgattagca
gi|6 : TTTGCGTGGATCTTAG------AAAGACGCCACCAGAAACATATA-CGTTGATGCAAAAAGTAC----CA--------------C------------------GCAACCGTTTTGTTAAACGTAAAC-TAGTTTTAAG-GTGG--CATACGAAG-TTTGCCGACGG---ACG----AGATTCAT----TTGAAGATGATAAGGGGAGAG-GA---CGAAAATCGAAAATTAGCA-------GT-----GACGTCGTG-ACGTC--------TGTTCGAGATGCTCTTGATAACGATCGACGATTGACAGTTA------AGGTATTATCCATAAGGATCGGTGTTA-GT-GTGG-GAAC-ATTTATACAATTCTAACGGAAC-----ATTT-AAAGAGGTCCA----------AGGTACACGCATAGCGTGTGCACAGGATTTTGAAAGATAACGAAAAAGAGCGACGTGTGAA-GAATTCT-AAGACATTTCTTAGCGATACAAAAAAGACGGAGATGAacgccaccagaaacatatacgttgatgcaaaaagtaccacgcaaccgttttgttaaacgtaaactagttttaaggtggcatacgaagtttgccgacggacgagattcatttgaagatgataaggggagaggacgaaaatcgaaaattagcagtgacgtcgtgacgtctgttcgagatgctcttgataacgatcgacgattgacagttaaggtattatccataaggatcggtgttagtgtgggaacatttatacaattctaacggaacatttaaagaggtccaaggtacacgcatagcgtgtgcacaggattttgaaagataacgaaaaagagcgacgtgtgaagaattctaagacatttcttagcgatacaaaaaagacggagatgatt
gi|7 : cataactgctaaatttgacgtcattcgcatttcaaatacaaacgtaaactgcgttttcgaagactgtgatagagatatttgcatgaaaatatggcgtcatcggaacagttggaaattagggcaaacataaagtAATTAAATACGTAAA-----A-T-TACGAGG---GATGTT-AA--AA---AAAAAATC----GT-ACTTTT-T--TC---TTA-TGATATTATTCT--TTTCCTCATGATAACACAGTTTACTTATATAAAAAAC-GCTTTCCATTTTGAAACTTTGTTTCTGAATTAGTTTAA-GCACAGCTAGGATGAT-----TAAAGCAACGAAC-GTT------ACCATAGTAACGCATATGC------------------ATTCCTAAAAACGTATTTAAACGCTGTCACAGTTGTAA-----------TTATGGTTGTCCAATAGCTTTAA-AATCCGAAAAACTCAAACGTAACGTCATCGTTACATA--A---------CTGCTTAATTTGACGTCATTCGCGATACAAATAC----AAACGTAAAACCCGTTTGTTG-GAAGAC--TGCGA-A------ATTTACATAAA----AATACTAGTATGGCGTCATCGGA---A---A-AGTTGtt
gi|8 : tttaatgtaacacatatgcttaatgtaaaacgtgcgttataagTTAATTGTAATATGTTTGTGCTAAATTCGTGATAATAA--TAA-AAA---TATATTTGTAAACGGC-ATATATATCCTGG-AATCATTCCATGTGATAACTTCCAAA-TGCCA--GTCTTCAACTTTATATTATTTTCGTTTGATT-CAA-TTGAAATTTGT-------GTAATGTATAGTACCAAGGACTTCATTGGAAATAACCATTCCAGCTTTAATTG-GCAATCGAACGTTAATTAA-TAC--ACACTTTTA-TGTATGA-C---AATGTTGCATTAATTGAATAATTCTTTGAG-ATTTTT-TACTCATTTCATTTAAGTTACTATAGTTTCTATAGCATAgaagttgacaaaacgccactataaacttataaaatgatgcaaaagggaccacgcaacagttctgtgaa
gi|9 : ctg--AAAATTGTG-TGTACGAGG---GACGTT-CA--AA---AATAAAAC----GGTATTTTTCT-CTC---CGA-TGAGATTATTAT--TATTCTCAGGATAACACAACATACATAGATGAAAACC-GCTTTCCAGTTTGAAACTGT----CTGAAT-AAGTTAATACTCAACTAGTATG-T-CAACCAAA--AGCGTACTGCTCCAttttttgtgatagatcagtaactttttgactttggattctgccaaaacaat
blockSeqs : . G A ACTTAG T TTTAGTTTTT T . T A A A C T T A AAAAAG TACATG GGCATATATATCCTGGAAT TGTGA TG A . . A T . T C A C AT . ATCG A AAA GT C G A AAAT G TT TTG TTTG T C A ATT A T A A AG T C GTTT T A T TCAC T G AAA A CC G A CGAACATCAAAT AAAA A T TG TA AA G C TCTT TACTAGT AACATAT T ATGTA CTTCGCGATAGTTTTGTAAACCGTGA A T C AT C TTG GTTG CGGA T GAG CAGACATGTTCTCC A CTGACGTT CTTTAT CG C A C ATCTA A . T A A AC T A T C T
blockSeqs : G AATAA AAA . . T . . . A AA . A . A G . . . . . . . . T . G A . A . . . A . GCCC . C AA T CT A A A . A C . C . G . . T AACAGAG . ATGCA CCACAAAACAGTTTTGTAAAACGTGA A T C AT . . . . . . GT . . . TA . . . AT . . . . C .
blockSeqs : . . . G G . . . . . . . . A . T T . T . . . A . GCAC . T AA T TC T T A . T T . A . A . . T AACATAT . ATGCA CCACGCAACCGTTTTGTTAAACGTAA . T . . . . . . . . AT . . . CA . . . . . . . . C
blockSeqs : . G T . . . . . . . . A . A A . G . . . G . ATTT . G AT . AA G C A . T C . C . G . . T TGCG . T CAACGTGA . A . . . . . . . . GT . . . AA . . . . . .
blockSeqs : . . G . . . . . . . . T . T C . A . . . A . . . C AA . . A . . . . G . . . . T AAC . . GGGCAA . T . . . . . . . . GT . . . . . . . .
blockSeqs : G . . . . . . . . T . T A . A . . . . . . . A A . . GGGCAA . T . . . . . . . .
blockSeqs : C . . . . . . . . C . A A . A . . . . . . A . . A . . . .
blockSeqs : G . . . . . . . . G . G . . . . A . . . . .
blockSeqCons : AA*********** ***** **********
originalCons : AGTGGTAGTCTTGCTGATATGTCTTTATTAAATGTAGAAAATAGAAATAAGCAATCATGTCTTAANCACGTTTTTAAAATTGTAAATGACAAGACTTAGTGTCCTTCATTGTATGAAAGAAAATTTAGTTTTTGNTAAAGATGTGCACTCTTATATTCTACTGGGGCAAATTTATATAATTTTAGTGTACCCAAATACCATGGGAAAGAGAATGTAACCTTCTTTTACAGTGCAATCAATGATTGGAATGCATTGCCTGCTGACATTAAGAAAATTAATAAAANTNGTCACTTTAAAAGTTCTGTCAAGACCCGTTTATTAGACAGAGCTAGGAAAGCATAGTTTATTTGTTGCACTTGTNGACTAGATATGNTCANTGTTTTTAATTGTAATATTTTTATNCAAAATTCGTGATAA-AA--TAA-AA----TATATTTGTAAACGGC-A-ATATATC-TGG-AA-CATTCCATGCGGTAACTTCCAAA-T-CCAAAGTCTTCAACTTTATATTATGTTTATTTAATT-CAA-TTGNAATNTGTACTCTTAGTAATGTATAGTACCAAGGACCTCATTGGAAATAANCNTTCCGGCTTCAATTGAGCAATCGAACGTTAATTAA-TAC--AAACTTTTA-TGTACGAGG---GACGTT-CA--AA---AATAAATC----GG-ATTTTT-T-CTC---TNA-TGANATTATTAT--TTTCCTCAGGATAACAAAACTTACATAAATGNAAACC-GCTTTCCATTTTGAAACTTT----CTGAAT-AGTTTTATGCGCAACTAGGATGATACGTCCAAAGCAACGAAC-GTTCCATTTACCATAGTAACGCATATGCGGCGCNCGTCG-TTTTACATTCCTTAAAACGTATTAAAACGCCGTNACAATTGCAA--A-------ATTATGGTTGTCCAATAGCTTTAATAATCCGCCAAATTGTAACGTAACGTCATNGTAACATA--A---------CTGCTAAATTTGACGTCATTCGCATTTCAAATAC----AAACGTAAACCGCGTT--TTC-GAAGAC--TGCGATAGA-GATATTTGCATGGA----AA------TATGGCGTCATCGGAAACA---A-AGTTGATGCAGAAAGTAC----CG--------------C------------------GCGA------------------AC-TAGTGTTTAG-GTGG--CATAGGAAG-TTTGCCGACGG---ACG----AGATTCAT----TGGAAGATGATAAGGGGAGAG-GA---CGAAAGTCGAAAATTAGCA-------GT-----GACGTCGTG-ACGTC--------TGTTCGAGATGCACTTGATAACGATCGACGATTGACAGTTA------AGGCATTATCCATCGGGATCGGTGTTA-GT-GTGG-GAACAATTTATACAATTCTAACGGAACAT---ATTT-AAAGATGTCCA----------AGGTACACGCACGGTGGGTGCCCAGGATTTTGAAGGATAACGAAAAAGAGCGACGTGTGAA-GGATTCTAAAGANATTCTTAAGCGATA-AAAAAAGACGGTTATGAATTCCTAGCACACGCATNAAGGNAAAANCGACNAGGGATNCCACTCAAGCATTAC
finalCons : AGTGGTAGTCTTGCTGATATGTCTTTATTAAATGTAGAAAATAGAAATAAGCAATCATGTCTTAANCACGTTTTTAAAATTGTAAATGACAAGACTTAGTGTCCTTCATTGTATGAAAGAAAATTTAGTTTTTGNTAAAGATGTGCACTCTTATATTCTACTGGGGCAAATTTATATAATTTTAGTGTACCCAAATACCATGGGAAAGAGAATGTAACCTTCTTTTACAGTGCAATCAATGATTGGAATGCATTGCCTGCTGACATTAAGAAAATTAATAAAANTNGTCACTTTAAAAGTTCTGTCAAGACCCGTTTATTAGACAGAGCTAGGAAAGCATAGTTTATTTGTTGCACTTGTNGACTAGATATGNTCANTGTTTTTAATTGTAATATTTTTATNCAAAATTCGTGATAA-AA--TAA-AA----TATATTTGTAAACGGC-A-ATATATC-TGG-AA-CATTCCATGCGGTAACTTCCAAA-T-CCAAAGTCTTCAACTTTATATTATGTTTATTTAATT-CAA-TTGNAATNTGTACTCTTAGTAATGTATAGTACCAAGGACCTCATTGGAAATAANCNTTCCGGCTTCAATTGAGCAATCGAACGTTAATTAA-TAC--AAACTTTTA-TGTACGAGG---GACGTT-CA--AA---AATAAATC----GG-ATTTTT-T-CTC---TNA-TGANATTATTAT--TTTCCTCAGGATAACAAAACTTACATAAATGNAAACC-GCTTTCCATTTTGAAACTTT----CTGAAT-AGTTTTATGCGCAACTAGGATGATACGTCCAAAGCAACGAAC-GTTCCATTTACCATAGTAACGCATATGCGGCGCNCGTCG-TTTTACATTCCTTAAAACGTATTAAAACGCCGTNACAATTGCAA-----------TTATGGTTGTCCAATAGCTTTAATAATCCGCCAAATTGTAACGTAACGTCATNGTAACATA--A---------CTGCTAAATTTGACGTCATTCGCATTTCAAATAC----AAACGTAAACCGCGTT--TTC-GAAGAC--TGCGATAGA-GATATTTGCATGGA----AA------TATGGCGTCATCGGAAACA---A-AGTTGATGCAGAAAGTAC----CG--------------C------------------GCGA------------------AC-TAGTGTTTAG-GTGG--CATAGGAAG-TTTGCCGACGG---ACG----AGATTCAT----TGGAAGATGATAAGGGGAGAG-GA---CGAAAGTCGAAAATTAGCA-------GT-----GACGTCGTG-ACGTC--------TGTTCGAGATGCACTTGATAACGATCGACGATTGACAGTTA------AGGCATTATCCATCGGGATCGGTGTTA-GT-GTGG-GAACAATTTATACAATTCTAACGGAAC-----ATTT-AAAGATGTCCA----------AGGTACACGCACGGTGGGTGCCCAGGATTTTGAAGGATAACGAAAAAGAGCGACGTGTGAA-GGATTCTAAAGANATTCTTAAGCGATA-AAAAAAGACGGTTATGAATTCCTAGCACACGCATNAAGGNAAAANCGACNAGGGATNCCACTCAAGCATTAC
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AAAACCAAGGATATTCGATTGACAGTTAAAGTAAATAGTAGCTCTGACAATTATATCATACTAATTTCTCTGAGGTTAATTGTTAGATGGGAATAGCTTTAATTGATACAGTTATTCATTAGTTAACACCACAGTCAGTTTTTTTGTATCTAGAAACGAGATAAATGTTTCATAAATGATGAGCATGTGAA
Unaligned ( gi|14 ): GAAAACCAAGGATATTCGATTGACAGTTAAAGTAAATAGTAGCTCTGACAATTATATCATACTAATTTCTCTGAGGTTAATTGTTAGATGGGAATAGCTTTAATTGATACAGTTATTCATTAGTTAACACCACAGTCAGTTTTTTTGTATCTAGAAACGAGATAAATGTTTCATAAATGATGAGCATGTGA
Unaligned ( gi|15 ): AAGATTCGACAACATTTTTATATCAAAATATACTCTACAAATCAATAAAGTTCACTTCTTTGAGATTTGCCATTCATTTCATTTAAGTAACCATAGTTTTCTATAGAATATTTTATTGTGATAGATCATTACTTTTTTTACACTGGATTTTGCCAAAAACAGTAG
Unaligned ( gi|17 ): ATGTTGCATTGATTGAACACTTCTTTGAGATTTTCCACTCATATTCATTTAAATTACCATAATTTATATAGGATATCTTATTGTGATAAATCAGTAAGTTTTGACTTTGGATTCTGCCAAAA
Unaligned ( gi|18 ): CCATTTACTATTTAGTACATTATCATTTATTAACATCGGCTACCACAGTTTCTATAGTAATTTTGATTGTGAAAGATCAGTAACTTTTTTAATTTGGATTCTGCCAAAAACAATA
Unaligned ( gi|22 ): GAAAAAAAATCTTCTTACTTATGCGATGTTCATGACTTTTGTGT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 222222 1 4444444444 11 1 2222222 4444444 777777777777777777777 11111 111 1 1 3333333 1 11 1 2222 111 11 1111 33333333333 1 222222222222 1111 1111111 4444444 22222 00000000000000000000000000000000000000000000000000000000000000 1 11 1111 1111 111 22222222222222 22222222 222222 333333 2222222222 1 1 22
lowQualScore : 5 1 5 999999 5 2222222222 1 88 1 1 2 1 1 1 5 1 0 0000000 5555555 333333333333333333333 66666 777 7 3 3 1 1 2222222 5 1 1 2 88 5 3333 7 999 33 8 0 6 3 7777 4 66 777 9999 4 4 4 777 1 4 1 2 66 1 5 0000 5 0 0 5 0 5 4444 6 1 11111111111 5 44 1 1 666666666666 4444 3 2 99 77 99 0 1 6 9999 7777777 1111111 4 00000 00000000000000000000000000000000000000000000000000000000000000 0 2 8 22 4 888 2222 2222 5 000 44444444444444 6 44444444 333333 66 6 6 6 6 888888 9999999999 0 5 1 00 1 1 1 1 1
lowQualScore : . . . ...... . .......... . .. . . . . . . . . . ....... ....... ..................... ..... ... . . . . . ....... . . . . .. . .... . ... .. . . . . .... . .. ... .... . . . ... . . . . .. . . .... . . . . . . .... . . ........... . .. . . ............ .... . . .. .. .. . . . .... ....... ....... . ..... .............................................................. . . . .. . ... .... .... . ... .............. . ........ ...... .. . . . . ...... .......... . . . .. . . . . .
lowQualScore : 5 0 5 555555 5 0000000000 0 55 0 0 5 0 0 0 5 0 7 0000000 7777777 777777777777777777777 77777 777 3 3 3 0 0 5555555 5 0 0 5 55 5 5555 3 777 88 8 6 7 7 9999 4 11 888 4444 4 4 4 888 0 4 0 0 11 0 0 6666 0 2 8 1 4 7 8888 7 0 77777777777 7 77 4 0 888888888888 2222 7 2 22 77 22 7 0 7 4444 6666666 6666666 4 77777 00000000000000000000000000000000000000000000000000000000000000 0 2 9 22 4 888 1111 1111 7 000 77777777777777 7 22222222 000000 00 7 7 7 7 333333 2222222222 0 5 0 77 0 0 0 0 0
consensus : AGTGGTAGTCTTGCTGATATGTCTTTATTAAATGTAGAAAATAGAAATAAGCAATCATGTCTTAANCACGTTTTTAAAATTGTAAATGACAAGACTTAGTGTCCTTCATTGTATGAAAGAAAATTTAGTTTTTGNTAAAGATGTGCACTCTTATATTCTACTGGGGCAAATTTATATAATTTTAGTGTACCCAAATACCATGGGAAAGAGAATGTAACCTTCTTTTACAGTGCAATCAATGATTGGAATGCATTGCCTGCTGACATTAAGAAAATTAATAAAANTNGTCACTTTAAAAGTTCTGTCAAGACCCGTTTATTAGACAGAGCTAGGAAAGCATAGTTTATTTGTTGCACTTGTNGACTAGATATGNTCANTGTTTTTAATTGTAATATTTTTATNCAAAATTCGTGATAA-AA--TAA-AA----TATATTTGTAAACGGC-A-ATATATC-TGG-AA-CATTCCATGCGGTAACTTCCAAA-T-CCAAAGTCTTCAACTTTATATTATGTTTATTTAATT-CAA-TTGNAATNTGTACTCTTAGTAATGTATAGTACCAAGGACCTCATTGGAAATAANCNTTCCGGCTTCAATTGAGCAATCGAACGTTAATTAA-TAC--AAACTTTTA-TGTACGAGG---GACGTT-CA--AA---AATAAATC----GG-ATTTTT-T-CTC---TNA-TGANATTATTAT--TTTCCTCAGGATAACAAAACTTACATAAATGNAAACC-GCTTTCCATTTTGAAACTTT----CTGAAT-AGTTTTATGCGCAACTAGGATGATACGTCCAAAGCAACGAAC-GTTCCATTTACCATAGTAACGCATATGCGGCGCNCGTCG-TTTTACATTCCTTAAAACGTATTAAAACGCCGTNACAATTGCA-----------ATTATGGTTGTCCAATAGCTTTAATAATCCGCCAAATTGTAACGTAACGTCATNGTAACATA--A---------CTGCTAAATTTGACGTCATTCGCATTTCAAATAC----AAACGTAAACCGCGTT--TTC-GAAGAC--TGCGATAGA-GATATTTGCATGGA----AA------TATGGCGTCATCGGAAACA---A-AGTTGATGCAGAAAGTAC----CG--------------C------------------GCGA------------------AC-TAGTGTTTAG-GTGG--CATAGGAAG-TTTGCCGACGG---ACG----AGATTCAT----TGGAAGATGATAAGGGGAGAG-GA---CGAAAGTCGAAAATTAGCA-------GT-----GACGTCGTG-ACGTC--------TGTTCGAGATGCACTTGATAACGATCGACGATTGACAGTTA------AGGCATTATCCATCGGGATCGGTGTTA-GT-GTGG-GAACAATTTATACAATTCTAACGGAACA-TTT------AAAGATGTCCA----------AGGTACACGCACGGTGGGTGCCCAGGATTTTGAAGGATAACGAAAAAGAGCGACGTGTGAA-GGATTCTAAAGANATTCTTAAGCGATA-AAAAAAGACGGTTATGAATTCCTAGCACACGCATNAAGGNAAAANCGACNAGGGATNCCACTCAAGCATTAC
Reference ( family-3607 ) : AGTGGTAGTCTTGCTGATATGTCTTTATTAAATGTAGAAAATAGAAATAAGCAATCATGTCTTAANCACGTTTTTAAAATTGTAAATGACAAGACTTAGTGTCCTTCATTGTATGAAAGAAAATTTAGTTTTTGNTAAAGATGTGCACTCTTATATTCTACTGGGGCAAATTTATATAATTTTAGTGTACCCAAATACCATGGGAAAGAGAATGTAACCTTCTTTTACAGTGCAATCAATGATTGGAATGCATTGCCTGCTGACATTAAGAAAATTAATAAAANTNGTCACTTTAAAAGTTCTGTCAAGACCCGTTTATTAGACAGAGCTAGGAAAGCATAGTTTATTTGTTGCACTTGTNGACTAGATATGNTCANTGTTTTTAATTGTAATATTTTTATNCAAAATTCGTGATAA-AA--TAA-AA----TATATTTGTAAACGGC-A-ATATATC-TGG-AA-CATTCCATGCGGTAACTTCCAAA-T-CCAAAGTCTTCAACTTTATATTATGTTTATTTAATT-CAA-TTGNAATNTGTACTCTTAGTAATGTATAGTACCAAGGACCTCATTGGAAATAANCNTTCCGGCTTCAATTGAGCAATCGAACGTTAATTAA-TAC--AAACTTTTA-TGTACGAGG---GACGTT-CA--AA---AATAAATC----GG-ATTTTT-T-CTC---TNA-TGANATTATTAT--TTTCCTCAGGATAACAAAACTTACATAAATGNAAACC-GCTTTCCATTTTGAAACTTT----CTGAAT-AGTTTTATGCGCAACTAGGATGATACGTCCAAAGCAACGAAC-GTTCCATTTACCATAGTAACGCATATGCGGCGCNCGTCG-TTTTACATTCCTTAAAACGTATTAAAACGCCGTNACAATTGCA-----------ATTATGGTTGTCCAATAGCTTTAATAATCCGCCAAATTGTAACGTAACGTCATNGTAACATA--A---------CTGCTAAATTTGACGTCATTCGCATTTCAAATAC----AAACGTAAACCGCGTT--TTC-GAAGAC--TGCGATAGA-GATATTTGCATGGA----AA------TATGGCGTCATCGGAAACA---A-AGTTGATGCAGAAAGTAC----CG--------------C------------------GCGA------------------AC-TAGTGTTTAG-GTGG--CATAGGAAG-TTTGCCGACGG---ACG----AGATTCAT----TGGAAGATGATAAGGGGAGAG-GA---CGAAAGTCGAAAATTAGCA-------GT-----GACGTCGTG-ACGTC--------TGTTCGAGATGCACTTGATAACGATCGACGATTGACAGTTA------AGGCATTATCCATCGGGATCGGTGTTA-GT-GTGG-GAACAATTTATACAATTCTAACGGAACA-TTT------AAAGATGTCCA----------AGGTACACGCACGGTGGGTGCCCAGGATTTTGAAGGATAACGAAAAAGAGCGACGTGTGAA-GGATTCTAAAGANATTCTTAAGCGATA-AAAAAAGACGGTTATGAATTCCTAGCACACGCATNAAGGNAAAANCGACNAGGGATNCCACTCAAGCATTAC
gi|1 : AGTGGTAGTCTTGCTGATATGTCTTTATTAAATGTAGAAAATAGAAATAAGCAATCATGTCTTAACCACGTTTTTAAA-TTGTAAATGACAAG------TGTCCTTCAT-GTATGAAAGAAAA----------GATAAAGATGTGCACTCTTATATTCTACTAGGGCAAATTTATATAATTTTAGTGTACCCAAATACTATGGGAAAGAGAATGTAATTTTCTTTTACAGTGCAATCAATGATTGGAATGCATTGCCTGCTGACATTAAGAAAATTAATAAAAATTGTCATTTTAAAAGTTCTGTCAAGACCCATTTATTAGACAGAGCTAGGAAAGCATAGTTTATTTATTGCACTTGTTGACTAGATATGGTCAATG-TTTTAATTGTAATATTTTTACTCAAAATTTGTGAT---AA--TGATAA----TATATTTGTAAACGGCAA-ATATATTATGGAAA-CATTCCATGCAGTAACTTCCAAATT-CCTAAGTCTTCAACTTTATATTGTGTTTATTTAATTGCAATTTGTAATGTATACTCTTAGTAA-GTATAATACTAAGGACCTCATTGGAAATAAGTCTTTGGGCTTCA--TGAGCA----AATGTT--TT---TAC--CAACTTTTA-TGTACGAGT---GACGGT-CA--AA---AATAAATC----AG-ACTTTT-C-CTC---TTA-TGAAATTTTTAA--TTTCCTCAGGATAATAAAACTTACATAAATGTAAACC-GCTTTCCAATTCGAAACTTT----CTGAAT-AGTTTTATGCGCAACTAGGATGATACGTCTAAAGCAACACAC-GTTCCATTTACCACAGTAATGTATATGCGACACCAATCA-TTTTACATTCCTTAAAATGTATTAAAACACCGTGACAATTGCAATTATTTATTTATTATGGTTGTCCAAAAGCTTTAATAATCTGCTTAATTGTAACATAACGTCATCGTAACATA--A---------CTAGTAAATTTGACGTCATTTGTATTTCAAATAC----AAACGTAAACTGTGTT--TTC-GAAGAC--TATGATAGA-GATATTTGCATGGA----AA------TATGGCGTCATCGGA---A---A-AGTTGATGTAGAAAGTAC----TA--------------C------------------GCAA------------------AC-TAGTGTTTAG-GTGG--CATAAGAAG-TTTGCTGACAG---ACG----TGATTCAT----TGGAAGATGATAAGGGGAGAG-GA---TGAAAGTTGAATATTAGCA-------AT-----GAAGTTGTG-ACGTC--------TGTTTGAGATGCACTTGATAACGATCGACGATTGACAGTTC------AGGCATTATCCATTTGGATCGGTGTAA-GT-GTGG-GAACAGTTTATACAATTCTAACGGAACA-TTCAATTTAAAAGATATCCATGAGGTAAAGAGGTACATGCACGTTACGTGCCCAGGATTTTGAAGGATAACAAAATAGAGCAACATGTGAA-GGATTCAAAAGAAATTCTTAAGCGATA-AACAAAAACAGTTATGAATTCCTAGCACACGCATAAAGGTAAAAGTGACAAGGGATACCACTCAAGCATTAC
gi|10 : TAGTTGTCCAATAGCTTTAA-AATCTGCCAAAT
gi|10 : ------------------GTGA------------------AC-TAGCATTTAG-ATGG--CATAGGAAGCTTTG--GACAG---GTG----AGATGCATCGGATGGAAGATGATAAGGAGAGAGTGAGAGTGAAAGTCGAAAATTAGCACAGACATGTTCTCCGACATCTTGAACATC-----------TTGAGATGCACTTGATAACAATCAATGATTGgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacatttctgtaataaggtgaactagcatttagatggcataggaagctttggacaggtgagatgcatcggatggaagatgataaggagagagtgagagtgaaagtcgaaaattagcacagacatgttctccgacatcttgaacatcttgagatgcacttgataacaatcaatgattggaag
gi|11 : tagttgtccaatagctttaaaatctgccaaatgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacatttctgtaataag-TATACCAGG---GACGTT-AA--AA---AATAAATC----GG-ATTTTT-T-TTC---TAA-TGAAATTATTAT--CGTCATCAGGATAACAAAACTAACATGAATGTAAACC-GCTTCCCATTTTGAAACTTT----TTCAAA-ATTGTTATGCACAACTTGGATTATACGTCCAAAGCAACGAAC-GTTCCATTTACCATAGTAACGCATATGCGGCTCACGTCG-TTTTACATTTCTTAAAACGTATTAAAACGCCGTGACAATTGCA-----------ATTATGGTGGTCCAATAACTTTAAAAATgaag
gi|12 : gatagttattgatggGGAGAG-GA---CGAAAGTCGAAAAGTAGCA-------GT-----GACGTCGTG-ACGTC--------TGTTCGAGATGCACTTGATAACGATCGACTGTTGACAGTTACTTTATAGACAGTATCCACCGTAATTGAGGTAA-GT-GTAC-GACCAATTTATAC------AACGAAACA-CTG------GAAGATGTCCA----------AGTTACA
gi|16 : gtggatcttggaaacacgccaacggaaaTACGAGG---GATGT--CA--AA---AGTAAACC----AT-ATTTTT-T-CTA---TTA-TGAGATTATT-----TTCTTCAGGATGATACAACTTATGTAAATGAAAACCCGCTTTCCATTTTAAAACTTT----CTGAAT-AAGGTTATGCGCAACTAGGATGATAtccaag
gi|19 : attattgcatattagtttcAGTGTT-AG-GTGG--CACAGGAAA-TTTGCCGACGGTTGACGGTTGAGATTCAT----TGGAAGATGATAAGGGGAGAG-GA---C
gi|2 : gacccaacgtgctatagacagacACGAGT---GACGTT-CA--AA---AATAAATC----GG-ATTTTT-T-CTC---TAA-TGATATTATTAT--TTTCCTCAGGATAATAAAACTTACATAAATGTAAACC-GCTTACCATTTTGAAACTTT----CTGAAT-AGTTTTATGCGCAACTAGGATGACACGTCCAAAGCAACAAAC-GTTCCATTTACCAAAGTAACGCATATGTGGCGCCCGTCG-TTTTACATTCTATAAAACGTATTAAAACGCCATCACAATTGCA-----------ATTATGGTTGCCCAAAAGCTTTAATAATCCGCTAAATTGTAACGTAACATCATAGTAAAATA--A---------CTAGTAAATTTGACGTCATTTGCATTCCAAA----------------------T--TTC-GAAGAC--TGTGATAGA-GATATTTGTATGGA----AA------TATGGCGTCATCGGA---A---A-AGTTG
gi|2 : aaTGGA----AA---------GACGCCCACGGAAACATATA-AGTTGATGTAGAAAGTACTTCGCGATAGTTTTGTAAACC------------------GTGA------------------AC-TAGTGTTTAG-GTGG--CATAAGAAG-TTTGCCGATGG---ACG----AGATTCAT----TGGAAGATGATAAGGGGAGAG-AA---CTTAAGTCGAAAATTAGCA-------AT-----GACGTCGTG-GCGTC--------TGTTCGAGATGCACTTGATAACGATCGACGATTGACAGTTA------AGTCATTATCCATTAGGATCGGTGTTT-GT-GTGG-G-ACAA-TAATACAATTCTAACGGAACA-TCTAATTTAAAAGATGTCCA----------AGGTACACGCACGGTGGGTGCCCAGGATTTTGAAGGATAACGAAAAAGAGCGACATGTGAA-GGATTCTAAAGAAATTCTTAAGCGAT--AAAAAAGACGGTTATGAATTCCTAGCACACGCATTAAGGAAAAATCGACCAGGGATTCCACTCAAGCATTACgaaattagagcaaaaacaaagttttgcgtgactcttggaaagacgcccacggaaacatataagttgatgtagaaagtacttcgcgatagttttgtaaaccgtgaactagtgtttaggtggcataagaagtttgccgatggacgagattcattggaagatgataaggggagagaacttaagtcgaaaattagcaatgacgtcgtggcgtctgttcgagatgcacttgataacgatcgacgattgacagttaagtcattatccattaggatcggtgtttgtgtgggacaataatacaattctaacggaacatctaatttaaaagatgtccaaggtacacgcacggtgggtgcccaggattttgaaggataacgaaaaagagcgacatgtgaaggattctaaagaaattcttaagcgataaaaaagacggttatgaattcctagcacacgcattaaggaaaaatcgaccagggattccactcaagcattac
gi|20 : aaacgagtgacgttcaaaaataaatcggattttttctctaatgatattattattttcctcaggataataaaacttacataaatgtaaaccgcttaccattttgaaactttctgaatagttttatgcgcaactaggatgacacgtccaaagcaacaaacgttccatttaccaaagtaacgcatatgtggcgcccgtcgttttacattctataaaacgtattaaaacgccatcacaattgcaattatggttgcccaaaagctttaataatccgctaaattgtaacgtaacatcatagtaaaataactagtaaatttgacgtcatttgcattccaaatttcgaagactgtgatagagatatttgtatggaaatatggcgtcatcggaaaagttggaaattagagcaaaaacaaagttttgcgtgactctGTACACGCACAGTAGGTTTCCCTGCCTTTGAAGGAAAATGGAAAAGAGCGATGTGTGAATGAATTCT-GAGACA
gi|21 : GGTGTTACGTAGTAGCGAACAATTTATATAAGTCTTACAGAACATTTT------GAAGTTTTCAA----------AGGCACAg
gi|3 : ACGAGG---GACGTT-CA--AA---A-TAAATC----GG-ACTTTT-T-CTC---TAA-TGAAATTATTTT--TTTCCTCAGGATAACAAA-CTTACATAAATAGTAACA-GCTTTCCATTTTGAAACTTT----CTGGAT-AGTTTAATGCGGAACTAGAATGATGGGTCTAAAGCAACGAAC-GTCCCATTTACCATAGTAACGCATATTCGGCGCACGACA-TTTTAAATTCCTTAAAACGTACTAAAACGCCGTTACAAATGCA-----------AATATGGTTGTCCAATAGCTTTAATAATCCGTCAAATTGTAACATAACGTCCTAGCAACATC--A---------CTACTAAATTTGACGTCATTCGCATTTCAAATAC----AAACGAAAACTGCGTT--TTA-AAAGAC--TGTGATAGA-GATATTTCCATAAA----AA------TATCGCGTCATCGGA---A---A-AGTTG-----GAAATTA------G--------------G------------------GCAA------------------ACATAAAGTTTTGCGTGGATCTTGGAAAG--ACGCCAACGG---A
gi|3 : TGGA----AA---------GACGCCAACGGAAACAGAGA-AGTTGATGCAGAAAGTAC----CA--------------CAAAACAGTTTTGTAAAACGTGA------------------AC-TAGTGTTAAC-GTGG--CATAAGAAA-TTTGCCTACGG---ACG----CGATTCAT----TTGAAGATGATAAGGGGAGAG-GA---CGAATGTCGAAAATTAGCA-------GT-----GACGTCCTG-ACGTCCTGACGTTTGTTCGTGATACACTTGATAACGATCGGCGATTGACAGTTA------AGGCATTATCCATCAGGATCGGTGTTA-GT-GTGG-GAACAATTTATACAATTCTAACGGAACA-TTT------AAAGATGTTCA----------AGGTACACGCACGGTGGaacagagaagttgatgcagaaagtaccacaaaacagttttgtaaaacgtgaactagtgttaacgtggcataagaaatttgcctacggacgcgattcatttgaagatgataaggggagaggacgaatgtcgaaaattagcagtgacgtcctgacgtcctgacgtttgttcgtgatacacttgataacgatcggcgattgacagttaaggcattatccatcaggatcggtgttagtgtgggaacaatttatacaattctaacggaacatttaaagatgttcaaggtacacgcacggtgg
gi|4 : acgagggacgttcaaaataaatcggactttttctctaatgaaattatttttttcctcaggataacaaacttacataaatagtaacagctttccattttgaaactttctggatagtttaatgcggaactagaatgatgggtctaaagcaacgaacgtcccatttaccatagtaacgcatattcggcgcacgacattttaaattccttaaaacgtactaaaacgccgttacaaatgcaaatatggttgtccaatagctttaataatccgtcaaattgtaacataacgtcctagcaacatcactactaaatttgacgtcattcgcatttcaaatacaaacgaaaactgcgttttaaaagactgtgatagagatatttccataaaaatatcgcgtcatcggaaaagttggaaattagggcaaacataaagttttgcgtggatctAATGGTAGTCTTGCTGATATGTCTTTAT-AAATGTAGAAAATAGAAATAAGCAATTATGTCTTAAGCATGTTTTTAAAATTGTAAATGACAAGACTTAGTGTCCTTCATTATATGAAAGAAAATTTAGTTTTTGTTAAAGATGTGCACTCTTAT--TCTACTGGGGCAAATTTATATAATTTTAGTGTACCCAAATATCATGGGAAAGAGAATATAACCTTCTTTTACAGTGCAATCAATGATTGGAATACATTGCCTGCTAACATTAAGAAAATTAATAAAATTAGTCACTTTAAAAGTTCTGTCAAGACCAGTTTATTAGACAGAGCTAGGAAAGCATAGTTTATTTGTTGCACTTGTAGACTAAATATACTCATTGTTTTTAATTGTAATATTTTTATACAAAATTTATGGTAA-AAAGTAA-TACATGTATATTTGTAAAC-----------------------TTCCA-------------AAT-T-CCAAAGTCTTCAACTTTATATTATGTTTATTTAATT-TAA-TTG
gi|5 : cttagattttaaaattagaaaaatatttatgttctgctctgatacagtgtcatttagactattcatgttcgtctttgtacccgagtttaaacaaagggttaagatctgtcaaaataaaattgttagattcataattaatgatatgggacctagggaaggtatcaatTTAGTATACGAGAAATGACGTT-CA--AA---AATAAATC----AT-ATTTTT-T-CTT---GTA-TCATATTATTAT--TTACTTCAGGATAACAATACTTACATCAATGAAAACC-GCTTTTCATTTTG---------------------TTTATTCACTAGTAGTATGATATGTTGAAAGCAGTGAAT-GTCCCATTTGTAATAGTAACGCATATCCGACATTTGTCGTTTTTGCATGTATT--AATGTATTAATACTCTATGATAATTGCA-----------TTTATGGTTGT-CACTAACTTAAA---------AAAATGTGAGTTAACGTCATTATAGCATACGAACATCAAATCTGCTAAATTTGACGTCATCCGCATTTCAAATACAAAAAAAAGAAAACCGCGTT--TTTAGAAGACAATGCTATAAACGCTA-TTGCATGCA----AA------TATGACCTAAT---ATGCG---ATAGTTT-T-------GTAC----AA--------------C------------------GTGA------------------AC-TAGTGATTAG-GTAG--CATAAGAAG-TTTGCCGACGG---GCT----AGAGTAAT----AAGAAGATGACAAG
gi|6 : tttaacacgtgtattacatttgtggaatagaaaatagatgtgcggctcttatttggCATA--A---------CTGCTAAATTTGACGTCATTCGCATTTCAAATAC----AAACGTAAACTGCGTT--TTC-GAAGAC--TGTGATAGA-GATATTTGCATGAA----AA------TATGGCGTCATCGG-AAC------AGTTG-----GAAATTA------G--------------G------------------GCAA------------------ACATAAAGTTTTGCGTGGATCTTAGAAAG-taaaagaaataacagtgattagca
gi|6 : TTTGCGTGGATCTTAG------AAAGACGCCACCAGAAACATATA-CGTTGATGCAAAAAGTAC----CA--------------C------------------GCAACCGTTTTGTTAAACGTAAAC-TAGTTTTAAG-GTGG--CATACGAAG-TTTGCCGACGG---ACG----AGATTCAT----TTGAAGATGATAAGGGGAGAG-GA---CGAAAATCGAAAATTAGCA-------GT-----GACGTCGTG-ACGTC--------TGTTCGAGATGCTCTTGATAACGATCGACGATTGACAGTTA------AGGTATTATCCATAAGGATCGGTGTTA-GT-GTGG-GAAC-ATTTATACAATTCTAACGGAACA-TTT------AAAGAGGTCCA----------AGGTACACGCATAGCGTGTGCACAGGATTTTGAAAGATAACGAAAAAGAGCGACGTGTGAA-GAATTCT-AAGACATTTCTTAGCGATACAAAAAAGACGGAGATGAacgccaccagaaacatatacgttgatgcaaaaagtaccacgcaaccgttttgttaaacgtaaactagttttaaggtggcatacgaagtttgccgacggacgagattcatttgaagatgataaggggagaggacgaaaatcgaaaattagcagtgacgtcgtgacgtctgttcgagatgctcttgataacgatcgacgattgacagttaaggtattatccataaggatcggtgttagtgtgggaacatttatacaattctaacggaacatttaaagaggtccaaggtacacgcatagcgtgtgcacaggattttgaaagataacgaaaaagagcgacgtgtgaagaattctaagacatttcttagcgatacaaaaaagacggagatgatt
gi|7 : cataactgctaaatttgacgtcattcgcatttcaaatacaaacgtaaactgcgttttcgaagactgtgatagagatatttgcatgaaaatatggcgtcatcggaacagttggaaattagggcaaacataaagtAATTAAATACGTAAA-----A-T-TACGAGG---GATGTT-AA--AA---AAAAAATC----GT-ACTTTT-T--TC---TTA-TGATATTATTCT--TTTCCTCATGATAACACAGTTTACTTATATAAAAAAC-GCTTTCCATTTTGAAACTTTGTTTCTGAATTAGTTTAA-GCACAGCTAGGATGAT-----TAAAGCAACGAAC-GTT------ACCATAGTAACGCATATGC------------------ATTCCTAAAAACGTATTTAAACGCTGTCACAGTTGTA-----------ATTATGGTTGTCCAATAGCTTTAA-AATCCGAAAAACTCAAACGTAACGTCATCGTTACATA--A---------CTGCTTAATTTGACGTCATTCGCGATACAAATAC----AAACGTAAAACCCGTTTGTTG-GAAGAC--TGCGA-A------ATTTACATAAA----AATACTAGTATGGCGTCATCGGA---A---A-AGTTGtt
gi|8 : tttaatgtaacacatatgcttaatgtaaaacgtgcgttataagTTAATTGTAATATGTTTGTGCTAAATTCGTGATAATAA--TAA-AAA---TATATTTGTAAACGGC-ATATATATCCTGG-AATCATTCCATGTGATAACTTCCAAA-TGCCA--GTCTTCAACTTTATATTATTTTCGTTTGATT-CAA-TTGAAATTTGT-------GTAATGTATAGTACCAAGGACTTCATTGGAAATAACCATTCCAGCTTTAATTG-GCAATCGAACGTTAATTAA-TAC--ACACTTTTA-TGTATGA-C---AATGTTGCATTAATTGAATAATTCTTTGAG-ATTTTT-TACTCATTTCATTTAAGTTACTATAGTTTCTATAGCATAgaagttgacaaaacgccactataaacttataaaatgatgcaaaagggaccacgcaacagttctgtgaa
gi|9 : ctg--AAAATTGTG-TGTACGAGG---GACGTT-CA--AA---AATAAAAC----GGTATTTTTCT-CTC---CGA-TGAGATTATTAT--TATTCTCAGGATAACACAACATACATAGATGAAAACC-GCTTTCCAGTTTGAAACTGT----CTGAAT-AAGTTAATACTCAACTAGTATG-T-CAACCAAA--AGCGTACTGCTCCAttttttgtgatagatcagtaactttttgactttggattctgccaaaacaat
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AAAACCAAGGATATTCGATTGACAGTTAAAGTAAATAGTAGCTCTGACAATTATATCATACTAATTTCTCTGAGGTTAATTGTTAGATGGGAATAGCTTTAATTGATACAGTTATTCATTAGTTAACACCACAGTCAGTTTTTTTGTATCTAGAAACGAGATAAATGTTTCATAAATGATGAGCATGTGAA
Unaligned ( gi|14 ): GAAAACCAAGGATATTCGATTGACAGTTAAAGTAAATAGTAGCTCTGACAATTATATCATACTAATTTCTCTGAGGTTAATTGTTAGATGGGAATAGCTTTAATTGATACAGTTATTCATTAGTTAACACCACAGTCAGTTTTTTTGTATCTAGAAACGAGATAAATGTTTCATAAATGATGAGCATGTGA
Unaligned ( gi|15 ): AAGATTCGACAACATTTTTATATCAAAATATACTCTACAAATCAATAAAGTTCACTTCTTTGAGATTTGCCATTCATTTCATTTAAGTAACCATAGTTTTCTATAGAATATTTTATTGTGATAGATCATTACTTTTTTTACACTGGATTTTGCCAAAAACAGTAG
Unaligned ( gi|17 ): ATGTTGCATTGATTGAACACTTCTTTGAGATTTTCCACTCATATTCATTTAAATTACCATAATTTATATAGGATATCTTATTGTGATAAATCAGTAAGTTTTGACTTTGGATTCTGCCAAAA
Unaligned ( gi|18 ): CCATTTACTATTTAGTACATTATCATTTATTAACATCGGCTACCACAGTTTCTATAGTAATTTTGATTGTGAAAGATCAGTAACTTTTTTAATTTGGATTCTGCCAAAAACAATA
Unaligned ( gi|22 ): GAAAAAAAATCTTCTTACTTATGCGATGTTCATGACTTTTGTGT