lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 33333 1 1111 11111 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 111111 11111 111111111 4444444444444444444444444444 11111 111 1 1 2222222222222222 1 11 333333 1 2222222222222 1 11 111
lowQualScore : 777 5 00000 4 1 77 6 0000 22222 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 4 0 66 777777 99999 8 4 444444444 1 4 0000000000000000000000000000 6 99999 6 222 7 1 3 2 7777777777777777 0 2 3 1 77 5 2 555 555 2 7777 7777777 000000 33 0 8888888 55555 7 1 0000000000000 1 1 2 77 4 111
lowQualScore : ... . ..... . . .. . .... ..... .................................................................................................................. . . .. ...... ..... . . ......... . . ............................ . ..... . ... . . . . ................ . . . . .. . . ... ... . .... ....... ...... .. . ....... ..... . . ............. . . . .. . ...
lowQualScore : 222 0 33333 3 4 99 0 6666 00000 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 4 6 11 000000 00000 4 4 444444444 1 4 8888888888888888888888888888 7 55555 8 999 0 6 8 4 8888888888888888 7 7 1 9 66 4 1 000 000 9 4444 6666666 555555 22 6 0000000 99999 0 7 3333333333333 0 1 4 33 0 777
consensus : TGACTTCCGGTTGANN-TGTAAAANAACTACGCNACTAAAATTNCTATTGATTATTGTTGTCATCAC----ATC----TATTT------C------G-----TAN-TATTT-AAT--ACT-TA---C-------A-----T-------T-GTTATC----------NATTGTTGGACANTAAACGTTAA----TTT-GA-TAACA--AG-A---AAATNAAT-TNAA-AT--AATTTGCGTATAA-TGTCAAATGTTACAGG-----CCAAAT-ATA---T-GA-ATATGACCATGTATT--TCGTGGAACTCTCCCACTAAAANTGACGAATGTGATGCTC-----CT--TTTCCT-AGGTTAT-GAA-TTTGAAA-TATNTTTGAAA---T---AT-ATGCTGTATAC----GTTAC-------TAACCATCTTATATGAGCC--TTAAC--ACTT-TACAATTTTGCA-----TGACCTCATGATTTCAT-GT-A----T--ATGTGAACTGA-GTGAATAAAGGATATTGNATTGNA---TTGTATTGTA
Reference ( gi|6 ) : TGACTTCCGGTTGAAT-TGTAAAATAATTATGCGACTAAGATTCCTGTTGATTATTGTTGTCATCAC----ATC----TATTT------T------G-----TAC-TATTT-AAC--ACT-TA---C-------A-----T-------T-GTTATC----------CATTGTTAGACATTTGATGTTAA-A-ATTT-GA-TAATA--AG-A---AAATGAAT-TGAA-AT--AATTTGCGTATAA-TGTCAAATGTTACAGG-----CCAAAC-ATA---T-GA-ATGGAACTATGCATA--TCGAGGAACTCTCCCACAAAAACTGACAAATGT--TGTTC-----CA--TTTCCT-AGGTTAT-GAA-TTTGAAC-TATCTCTGAAA---T---AT-ATGCTGTATAC----GTTAC-------TAACCATCTTATATGAACA--ATAAC--ACTT-TACAACTTTGCA-----TGACCTCATGACTGCAG-GT-A----T--ATATGAAATGA-GTGAATAAAGGATATTGTTTTGTA---TTGTATTGTAT
gi|2 : TGACTTC-GGTTGATA-TGTAAAAAAATC---CTACTAAAACTAATATTGATTATTCATGTCACCTC----ATT----TATTT------T------GAGTTGTAG-TATTT-AATTAATA-TG---T-------A-----T-------T-GTTATTTTTTAAATATCATTGTTGGATAGT--ACAGTAA-ATATTCCAA-TAACA--AT-A---AAATCGAC-T-AA-ATTAAATGTGAGTATGA-TGTCAAATAGAAAATG-----TCAAATTAAA---T-GA-ATATGAGTAT--ATAATTTGTGGAACTCTCCCACTGAAGTTGACGATTGT--GATGC-----TAGTTTTCTC-AGGCTAAAGAT-TTTGAATATATTTCAAAAG---T---GTTATAC---ATAC----ACTAC-------TTACCATCTTACAAGAGCC--TTAAC--ACTT--ACAATTTTGCA-----TTCCCTCATGATTGCAT-GTTA----TT-ATATGAACCGA-G-AAATAAAGGATATTGACTTGAA---TTG
gi|5 : taatgacactcttaacaatactgataactaatattactgttaaacgctccataaaatcaatcactgtgtgacaaatttataaaaaaatatgccaagtgagaattatataagcacatgcaagaccgTGACTTCCGGTTGATA-CGTAAAAGAAA-ACCCTACTAAAATTGCTATTGATTATTGTTGTCATCAC----ATG----TATTT------C----------------------AAT--ACT-TA-----------------T-------T-GTTATA----------ATTTGTTATCCATT----GTTG---------GA-TAGCA--A------ATATAAATGTTAA-AT--AG-------AAAA-TGTCGAATAT------------------ATC---T-AATATGGA--TTTGTATT--TCGTGGATATCACCCACTAAAAATGGCGACTGTGATGCTC-----TT--TTTTCTCAGGTTAT-a
gi|7 : taaaatagtaaataccagtcgtgaaccatttgtcatcattcatgcgttgtatatttcatttataaacatacaaaatacacttataacaatactgttaactaacaatacaattaaaacacttcgtaaaacaagaattgtgcgacaacttcttccaaaatatacccctataactaatggcatgaattTGACTTCCGGTTGATA-TGTAAAAGAAA-ACCCTACTAAAATTGCTATTGATTATTGTTGTCATCAC----ATG----TATTT------C----------------------AAT--ACT-TA-----------------T-------T-GTTATA----------ATTTATTATCCATT------------ATTG-GA-TAGCA--A------ATATAAATGTTAA-AT--AG-------AAAA-TGTCGAATAT------------------ATT---T-AATATGGA--TTTGTATT--TCGTGGATATCATCCACTAAAAATGGCGACTGTGATGCTC-----TT--TTTTCTCAGGTTAT-agg
gi|1 : aatagtaaataccagtcgtgaaccatttgtcatcattcatgcattgtatatttcattaataaacatacaaaatacacttataacaatactgttaactaacaatacaattaaaacacttcgtaaaacaagaattgtgcgacaacttcttccaaaatatacccctataactaatggcatgaattTGACTTCCGGTT-AATATGTGAAAGAA-------------ATTT-TATTGATTATTGTTGTCATCAC----ATC----GAAAT------T------T-----CAA-TACTT-AGT--GTTATA---C-------T-----T-------T-GTTATT----------TCTTCTTGGATATCAAATA-TAA-A----T-GA-CAAAT--AG-G---AAAT---T-TCAA-AT--ATGTTGAATATagg
gi|8 : aagcactctgtataattcctttacataaccaatagtcacttagtgttatgcaaaccaatatgtgataataacattgaacatctgatattttaatcgccgttcaaaatcacacagaaataaaatgtcactaaagtcactttccgtatctcgcgggtgaaaaaatcatggcatgtcagacgattcttcgacatcaaaataataaataccagtcgtgaaccatttgtcatcatacatgcgttgtatatttcagttacatacatacaaaatactctcttaacaataatgttaactaataatgctgttaaaacacttcataatacgagtattgtgcgacaactttatccaaaatataccaaaagcaaatggcatgatttGACTTCCGGTTGAGT-TGTAAAATAACTATGCGACTAA-ATTCCTATTGACTATTGTTGTCATCAC----ATC----TATTTTCAAACT------G-----TACTTGTTC-AAT--AAT-TATTGT-------AATTATT-------T-GTTATC----------CACTGTTGGACAGTAAATGT-------TTT-AA-TAATA--AG-A---AAATCAAT-TGAA-GT--ATTTTGCGTATAA-TATCAAATGTTTCGGG-----CCAAAT-ATAC--T-GA-ATATGACCATGTATT--TCGTTGAACTGACCAACAAAAATTTACCCATGTTATGTTC-----CT--TTTCCC-AGATTAT-AAA-TTTAAAA-TATATTTGAAA---T---AC-ATGCCGTATAT----GTTAC-------TAACCATCTTATggttttgtgttttgtggatatctcccactaaaactgacgaatgtgatgctctttctattatgttaaaagccc
gi|4 : aaaaatcaattattgtgtgacaattttatcctaaatataacatgtggggattctgtaaacaaatacacaacctcACTTCCGGTTGAAT-TATAAAATAACTATGCGACTAAAATTTCTATTCATCATTGTTGTCATCAT----ATC----TATTT------TCGAATGG-----TAC-CATTT-CAA--ACC-TA---CA------A-----TAATAACAT-GTTATC----------GATTTTTGGACAGTAGACGTTAATA-TTTT-AA-TCATA--AG-T---AAATGATT-TGAA-CT--AATTTGCGTTTAA-GGTCAAATGTTACAGG-----CCAAAT-ATAT--T-GA-ATATAACCATGTATA--TCGTGG--------------AACTAACAAATGT--TGTTC-----CT--TTTCCT-AGGTTAT-GAA---------------TGAAA---T---GT-ATGCTGTATAT----GTTAC-------TTACCATCTTATATGAGCC--TTAAC--AC----------------------------TGATTGCAT-GT-A----T--ATGTGAACTGA-GTGAATAAAGGATATTGTATTGTA---TTGTATTGT
gi|3 : gacaattgtatccatacttttacgtgtgggaattctgtaaacagtctcaAAATAACTATGCGACTAAAATTCCTATTGATTATTGTTGTCATCACGAATATCACAATATTT------TCGAATTG-----TAC-TATTTCAAC--ACT-TA---CTGTAATTA-----T-------TTGTTATC----------CATTGTTGGACTGTAGGTGTTTA-T-ATTT-GAATAATA--AG-A---TAATAAAT-TGAA-GT--AATTTGCGTATTT-TGTCAAATGTTATTGG-----CCAAAT-ATA---TTGA-ATATAAACATGTATA--TCGTGGAACTCTCCCACAAAAAATGACAAATGT--TGTTC-----CT--TTTCCT-AGGTTAT-GAA-TTTGAAA-TATCTTTGAAA---T---GT-ATGCTGTATAC----GTTAC-------TTACAATCGTATATGAACC--CTAAC--ACT-------------------TGATTTCAT------AT-AT-A----T--ATGTGAACTGA-ATGAATAAtatt
gi|13 : taataagtttataaataataatacgatgtatatataacttcatactagtaagacagttacgttgctacctaataggccaataatACTAAAATTGTTATTGACTATTGTTGTCATCAC----ACG----TATTT------CGA----G-----TTG-TGTTC-AAT--ACT-TA---CT------A-----T-------T-ATAAT-------------TTG-TA---ATCTATTGTTG---------GA-TAGC---AG-ATATAAATG----TCAA-AT--------TGTA-AA-TTTCAAAT-----------------AT-AT----T-GA-ATATGGTTTTGTATT--TCGTGGAACTCTCCCACTAAAATTGTTGAATGTGATGCTCTTAGACT--TTTTCTCAGATTAT-t
gi|11 : cggtcgatacgtataaagaaaaaccctTTT-GA-CAATATAAGTA---ACATTCTT-TAAACGT--AATTTGCGTATAA-TGTCAATTGTTACAGG-----C--AAC-ATATATT-GA-ATATAACCATGTATT--TCGTGGAACTTTCCCAC-AAAACTGACAAATGA--AGTTC-----CT--TTTCCA-AGGTTAT-AAA-TTTAAAA-TATCTTTGAAA---T---AT-ATGCTGTATAC----GTTACTAAGTTTTAACGTTTTTATATGAGCC--TGAAC--ACTT-TATAATTTTGCA-----TGACCTCATGATTTTAT-GT-A----T--ATGTGAACTGA-GTGAATAAAGGaggccc
gi|1 : gatttatgaaagtggagtTATAAATGACAAAT-----AGGAAATTTCAAAT-ATG---TTGA-ATATGGTTTTGTGTT--TTGTGGATATCTCCCACTAAAACTGACGAATGTGATGCTC----------TTTCT-A--TTAT-G
gi|18 : aagcactctgtataattcctttacataaccaatagtcacttagtgttatgcaaaccaatatgtgataataacattgaacatctgatattttaatcgccgttcaaaatcacacagaaataaaatgtcactaaagtcactttccgtatctcgcgggtgaaaaaatcatggcatgtcagacgattcttcgacatcaaaataataaataccagtcgtgaaccatttgtcatcatacatgcgttgtatatttcagttacatacatacaaaatactctcttaacaataatgttaactaataatgctgttaaaacacttcataatacgagtattgtgcgacaactttatccaaaatataccaaaagcaaatggcatgattttgacttccggttaatatgtgaaagaaattttattgattattgttgtcatcacatcgaaatttcaatacttagtgttatactttgttatttcttcttggatatcaaaTTACAGG-----CCAAAT-ATA---TCGA-ATATGACCATGTATT--TCGTGAAAATCTCCTATAAAAAATGACGAATGTGATGTTC-----CT--TTTCTT-AGGTTAT-AGA-TTT-AACATATATTTGAAA---C---AT-ATACTGTATGC----GTTAC-------TAACCATCTTATATGA------------GTCT-TAT-ATTTTGTA-----TGATATTTTG--T-CAT-AT-ATT--T--ATGTGAACTGA-GTAAATTAAGAAttaaaagccc
gi|12 : a-----CCAAATTATA---TTGA-ATTTGATTATGTAAT--TCGTGGAACTCTCCCACTAAAATTGACGAGTCT--GATGCG----CG--TTTTCTCAGGTTAT-AGA-TTTAAAA-CATATCCGAAA---T---GT-ATTCTATATAC----GATAT-------TTTACGTCTTTTATGAGCC--TCAAC--AC-T-AACAATTGTGCA-----TGCCCTCATCTTTCCGT-GT-ATT--T--ATGTGAACTAA-GTGAATTGAAAATA
gi|15 : atatataatgtaacaatagacccctttAAACTATA---TTGA-ATATAAGCATGTATA--TCGTGGTACTCTCCCAAGAAAACTGACAAATGT--TGTTC-----CT--TTTCCT-AGGTTAT-GAA-TCTGAAA-TATCTTTAAGA---T---AT-ATGCTGTTTAC----GTTAC-------TAACCATCTTATATGAGCC--TTAAC--ACTT-TACAACTTTGCA-----TGACCTCGTGATTTCAT-GT-A----T--ATGTGGACTGA-GTGagtaactgaattga
gi|14 : gaatataatacatgtattGGAACTCTCCCGCCAACATGGATGACTTTGACGCTC-----CC--TTTCTC-TTGTTAT-CAA-TTTAAAA-TGTATTTAAAA---T---AT-ATATTGTATAG----GTTAC-------TAACCATCTCACATGAGCC--TTAAC--ACT--------TTTGCA-----TGACCTCATGATTTCAT-GT-AT---T--GTGTGAACTGA-GTGAATAAAGGTTATTGCATTGAA---TTG
gi|19 : taatatatatttaaatataccattaactacttctcGATGAATGT--CGCGCG----CA--TTTGTT-TGATAAT-AAAATTTAAAT-GA-ATTTGGTA---T---GT-ACATTGTATAT----GTTAC-------TAACGATCTTATAT----------AT--ATTT-TTGAATTTTGTA-----TGTCTACATGATTTCAT-ATAA----T--GTGTGAACCGA-GTGAATAAACGATTTTactttttttcaggttt
gi|23 : attcCCT-AGGTTAT-GAA-TCTGAAA-TATCTTTAAGA---T---AT-ATGCTGTTTAC----GTTAC-------TAACCATCTTATATGAGCC--TTAAC--ACTT-TACTACTTTGAA-----TGACCTCGTGTTTTCAT-GT-A----T--ATGTGGACTGA-GTGAATAAaaaatgaataagaaattcaatgaaatacaacaaa
gi|20 : -TTTGAA--TGTATTTGAAA---T---AC-ATGCTGTACAC----GCTAC-------TAACCATCTACTATGTCCC--TTAAC--ACTT-CACAAGTTTGCA-----CGAGCCCGTGATTTCAT-GT-A----T---TATGTGATTATGTGAACA
gi|22 : tatt-TTTG----TATATC--AAA---TGTAAT-ATGTTGTATACCTACATTAC-------TAATC-TCCCATACGACCC--TTAAG--ACTT-TGCAATTTTGCA-----TGACCTCATGATTTCGT-GT-T----C--A-ATGAAAcacaggcggcagtatcggtgtttggattaccccctttaccgattaaaaaaaaaa
gi|17 : caaatgcattttttaagccatatcctctgC-TGTCACTGGAAGAGT---AC-ATGCT-----------TTAT-------TCACCATCTTAAATTAGCC--ATAAC--ACTT-TAAAATGTCGTAAACTATGCCCTCTTGATTTCAT-GT-A----TTTATGTGAACTGA-GTGAATAAAGGATATTG
gi|27 : tacattatTGCTGTATGC----GTTAC-------TAACCATTTTATATGAGCC--TTTAT--GCGT-TACATTTGTGCA-----TGACCTCAaatatgactggttttatcggaaacacaagaaaccatatgaaaacacaaacatgtaccttttacgaacgtttctacg
gi|10 : ATACT---GTTAC-------TAACCATCTTATATAAGCC--CTAAC--AAATATGCAATTATATA-----TGACCTCATGATTG-AT-GT-AATGTT--TTATGATCTGA-GTGAATAAAGGTTATTGTACTGTATTGTTGTATTGTAcaatgtct
gi|25 : atatcatataaatctcagtataaatagtatgtgaatttttcaaactgatagtcagtaagtttaaattatttttctcccaacaattttttgaagcaaatattaaagatacattgcttacaatgaa----GTTAC-------TATCAAT-TTA-ATGAGCATTACAAC---TTT-TATAATTTTTAA-----TAAACTCAAGATTTCATTGT-A----T--ATATGAACTGA-aactatgtaatacacagagataatatattactaaacatgtacttacgatcacacgtctacat
gi|16 : tacatacatattATTTTAAATGTATA--CCAACCAACTT--ACAGTTTTGCA-----TGTCCTCATAGTTTCAT-AT-A----TTTATGTGAACTGA-GTAAATAAAGGAAAATGAATTGAA---TTG
gi|28 : agcaagaaaatcgactgcactaaatattatgtctgatgtaaattataaaatttcaaattgaatatatatgacgaatgctatgctgtttttttttcagatatagatttaagatatACGTCATGATTACAA--T-A----TTTATATGAGATGG-GTGAATAAATGATATTGTAATGTA---TTG
gi|29 : CCTCATGATTTCAT-GC-A----TT-ATGTAAATTGA-GTGAATGAAGGGTATCG
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|9 ): ATAACCAGAGACATGTTTATATAATTAAGTCACTAAGCAAAGCAATATGTGATAATACTATAGTAAACATAACCAATAGTCACTAAGTGTCACGCAAACCAATATTTGATCAAAATATTGAACACTTAATAAAAGTGTCACTTTTCATATCTCGCGGGAGAAAAATCATGGCATGTCAGACGATTCTTCGACTTTAAAATAGCAAATATCAGCCGTGAACCATTTGTCATCATACATGCGTTGTATATTTCAGTTATATGCATACAAAGTGTGCTCTTAACAAAACTTTTAACTGATAACACTGTTAAAACACTTCGTAAAACAAGTATTGCGCGACAACTTTATAAAAAAATACACCAAATGGCATGAATTTGACTTCCGGTCGAT
Unaligned ( gi|21 ): AAATACCAGCCGTGGATCCGTTGTCAGCATACATGTTTGGTTTTAATCAATTAAACATGTATAATTGTATAATTTTGTCAATACAGACAGCTACCAATATTATCTATGACATCGTAAATGTTGGAATATATTGTGCGACATGTTTTCTAACATATA
Unaligned ( gi|24 ): GGTATTATTTCAATACTTATTATTATAAATTTGTTGTCGATTAATTAGATAGCAAGTGTAAATATTTCAATATCAAGAAAATCGACTGAACTAACTGTATGTAGGATGTCGAATAGTTATTGTTAAGT
Unaligned ( gi|26 ): AATCAGCGACATTCAGAATGTCGTGTAAGCAGTCATGATTTCATGTTTTATGAACTAAGTGAATAACGATAATTGAATTG
Unaligned ( gi|30 ): GAATATTAAATATATGTATTGAATATGATTTTATATTTCGTGGAGCTCTCCAAC
Unaligned ( gi|31 ): GACATATCTACATCCAGGGGCGTAGCTAGCTATAAGTTATGTGCAGGAACA
Alignments
lowQualScore : 22222 77777777777777777777777777777777777777777777777777777777777777777 222222222222 333333333333 11111 11111 11111111111111 1 11 11111
lowQualScore : 22 4 1 22222 2 11 9999 88888 55 44444444444444444444444444444444444444444444444444444444444444444 4 111111111111 88 0 2 0 88 888888888888 55 3 1 55 888 22222 1 555 33333 2 3 99999999999999 5 5 8 66666 2 2 444 6 2 8 66666 00 0 0 33 1 444 2 5555 333 6666 6666666 2 7777 0 55555 4 2 2 33333 55555 3 1 1 777
lowQualScore : .. . . ..... . .. .... ..... .. ................................................................. . ............ .. . . . .. ............ .. . . .. ... ..... . ... ..... . . .............. . . . ..... . . ... . . . ..... .. . . .. . ... . .... ... .... ....... . .... . ..... . . . ..... ..... . . . ...
lowQualScore : 00 4 0 22222 6 11 4444 66666 55 77777777777777777777777777777777777777777777777777777777777777777 0 777777777777 11 5 4 5 66 555555555555 00 6 8 00 555 55555 0 555 33333 8 6 55555555555555 3 3 7 77777 0 6 777 4 0 8 22222 33 5 7 44 9 444 4 0000 999 6666 8888888 2 3333 1 66666 0 0 0 66666 33333 3 0 0 000
consensus : TGACTTCCGGTTGATATGTA-AAANAANTACGCNACTAAAATTNCTATTGATTATTGTTGTCATCAC----ATC----T--ATTT------C------G-----TA-NTATTT-AAT--ACT-TA---C-------A-----T-------T-GTTATCN----------ATTG-TTGGACAGTAAAC-GTT-A-A---T---TT--GA-TAACA--AG-AAAATNAAT-TNAAA--TAA-TT-TGCGTATAA-TGTCAAAT-GTTACAGG-----CCAAAT-ATA-TTG-----AATATGACCATG---TATTTCGTGGAACTCTCCCACNAAAANTGACGAATGTGATGCTC-----CTTTTCCT--AGGTTATAAATTTGAA--ATATATTTGAAAT---ATAT-GCT----GT---ATAC----GTTACTAA-------CCATCTTATATGAGCCTTAAC-ACTTT-ACAATTTTGCA-----TGACCTCATGATTTCA-TG-T-A--T--ATG-----TGAACTGAGTGAATAAAGGAT-ATTGAATTGAA---TTGTATTGTA
Reference ( family-3523 ) : TGACTTCCGGTTGANNTGTA-AAANAACTACGCNACTAAAATTNCTATTGATTATTGTTGTCATCAC----ATC----T--ATTT------C------G-----TA-NTATTT-AAT--ACT-TA---C-------A-----T-------T-GTTATCN----------ATTG-TTGGACANTAAAC-GTT-A-A---T---TT--GA-TAACA--AG-AAAATNAAT-TNAAA--TAA-TT-TGCGTATAA-TGTCAAAT-GTTACAGG-----CCAAAT-ATA-T-G-----AATATGACCATG---TATTTCGTGGAACTCTCCCACTAAAANTGACGAATGTGATGCTC-----CTTTTCCT--AGGTTATGAATTTGAA--ATATNTTTGAAAT---ATAT-GCT----GT---ATAC----GTTACTAA-------CCATCTTATATGAGCCTTAAC-ACTTT-ACAATTTTGCA-----TGACCTCATGATTTCA-TG-T-A--T--ATG-----TGAACTGAGTGAATAAAGGAT-ATTGNATTGNA---TTGTATTGTA
gi|1 : TGACTTCCGGTTAATATGTG-AAAGAA-------------ATTT-TATTGATTATTGTTGTCATCAC----ATC----GAAATTT------C-------------A-ATACTT-AGT--GTTATA---C-------T-----T-------T-GTTATTT----------CTTC-TTGGATATCAAAT-ATA-A-A--------T--GA-CAAAT--AG-GAAAT---T-TCAAA--TAT-GT-TGAATAT
gi|1 : aagcactctgtataattcctttacataaccaatagtcacttagtgttatgcaaaccaatatgtgataataacattgaacatctgatattttaatcgccgttcaaaatcacacagaaataaaatgtcactaaagtcactttccgtatctcgcgggtgaaaaaatcatggcatgtcagacgattcttcgacatcaaaataataaataccagtcgtgaaccatttgtcatcatacatgcgttgtatatttcagttacatacatacaaaatactctcttaacaataatgttaactaataatgctgttaaaacacttcataatacgagtattgtgcgacaactttatccaaaatataccaaaagcaaatggcatgatttTATAAATGACAAAT------AGGAAATTTCAAAT-ATG-TTG-----AATATGGTTTTG---TGTTTTGTGGATATCTCCCACTAAAACTGACGAATGTGATGCTC-----TTTCTATT--ATGTTAggttttgtgttttgtggatatctcccactaaaactgacgaatgtgatgctctttctattatgttaaaagccc
gi|10 : aagcactctgtataattcctttacataaccaatagtcacttagtgttatgcaaaccaatatgtgataataacattgaacatctgatattttaatcgccgttcaaaatcacacagaaataaaatgtcactaaagtcactttccgtatctcgcgggtgaaaaaatcatggcatgtcagacgattcttcgacatcaaaataataaataccagtcgtgaaccatttgtcatcatacatgcgttgtatatttcagttacatacatacaaaatactctcttaacaataatgttaactaataatgctgttaaaacacttcataatacgagtattgtgcgacaactttatccaaaatataccaaaagcaaatggcatgattttgacttccggttaatatgtgaaagaaattttattgattattgttgtcatcacatcgaaatttcaatacttagtgttatactttgttatttcttcttggatatcaaaTTTGAAGCAAATATTAAAGAT---ACATTGCTTACAATGAAATACT---GTTACTAA-------CCATCTTATATAAGCCCTAACAAATAT-GCAATTATATA-----TGACCTCATGA-TTGA-TG-T-A-----ATGTTTTATGATCTGAGTGAATAAAGGTT-ATTGTACTGTATTGTTGTATTGTAaaagccc
gi|11 : atatcatataaatctcagtataaatagtatgtgaatttttcaaactgatagtcagtaagtttaaattatttttctcccaacaattt---T---TT--GA-CAATATAAGTAACATTC-T-TTAAACGTAA-TT-TGCGTATAA-TGTCAATT-GTTACAGG-----CAACAT-ATA-TTG-----AATATAACCATG---TATTTCGTGGAACTTTCCCAC-AAAACTGACAAATG--AAGTTC-----CTTTTCCA--AGGTTATAAATTTAAA--ATATCTTTGAAAT---ATAT-GCT----GT---ATAC----GTTACTAAGTTTTAACGTTTTTATATGAGCCTGAAC-ACTTT-ATAATTTTGCA-----TGACCTCATGATTTTA-TG-T-A--T--ATG-----TGAACTGAGTGAATAAAGGaactatgtaatacacagagataatatattactaaacatgtacttacgatcacacgtctacat
gi|12 : gatttatgaaagtggagt-----CCAAATTATA-TTG-----AATTTGATTATG---TAATTCGTGGAACTCTCCCACTAAAATTGACGAGTCTGATGCGC-----GTTTTCTC--AGGTTATAGATTTAAA--ACATATCCGAAAT---GTAT-TCT----AT---ATAC----GATATTTT-------ACGTCTTTTATGAGCCTCAAC-AC-TA-ACAATTGTGCA-----TGCCCTCATCTTTCCG-TG-T-ATTT--ATG-----TGAACTAAGTGAATTGAAAAT-AAGTAACTGAA---TTG
gi|13 : atatataatgtaacaatagacccctttCGGTCGATACGTATAAAGAAAAACCCTACTAAAATTGTTATTGACTATTGTTGTCATCAC----ACG----T--ATTT------C------GAG---TT-GTGTTC-AAT--ACT-TA---C---------------------T-ATTAT-A----------AT---TTG-----TAATCTATT-G-----T---TG--GA-TAGCA--G---ATATAAATGTCAAA--T----------------TGT-AAAT--TT-----------CAAAT-ATA-TTG-----AATATGGTTTTG---TATTTCGTGGAACTCTCCCACTAAAATTGTTGAATGTGATGCTCTTAGACTTTTTCTC-AGATTATa
gi|14 : AT-ATT-T-A-----AATAT-ACCATTAACTACTTCTCGGAACTCTCCCGCCAACATGGATGACTTTGACGCTC-----CCTTTCTC--TTGTTATCAATTTAAA--ATGTATTTAAAAT---ATAT-ATT----GT---ATAG----GTTACTAA-------CCATCTCACATGAGCCTTAAC-AC--------TTTTGCA-----TGACCTCATGATTTCA-TG-T-AT-T--GTG-----TGAACTGAGTGAATAAAGGTT-ATTGCATTGAA---TTGaggccc
gi|15 : taatatAACT-ATA-TTG-----AATATAAGCATG---TATATCGTGGTACTCTCCCAAGAAAACTGACAAATGT--TGTTC-----CTTTTCCT--AGGTTATGAATCTGAA--ATATCTTTAAGAT---ATAT-GCT----GT---TTAC----GTTACTAA-------CCATCTTATATGAGCCTTAAC-ACTTT-ACAACTTTGCA-----TGACCTCGTGATTTCA-TG-T-A--T--ATG-----TGGACTGAGTGactttttttcaggttt
gi|16 : gaatataatacatgtattaTGACGAATGCTATGCTG-----TTTTTTTTTCAGAT-ATAGATTTAAG--ATATATTTTAAAT---GTAT------------------------ACCAA-------CCA-------------------ACTT--ACAGTTTTGCA-----TGTCCTCATAGTTTCA-TA-T-A--TTTATG-----TGAACTGAGTAAATAAAGGAA-AATGAATTGAA---TTG
gi|17 : agcaagaaaatcgactgcactaaatattatgtctgatgtaaattataaaatttcaaattgaatatata---ATGC----TTTATTCA-------CCATCTTAAATTAGCCATAAC-ACTTT-AAAATGTCGTAAACTATGCCCTCTTGATTTCA-TG-T-A--TTTATG-----TGAACTGAGTGAATAAAGGAT-ATTGAAT
gi|18 : tacattatctgtcactggaagagtacTTACAGG-----CCAAAT-ATA-TCG-----AATATGACCATG---TATTTCGTGAAAATCTCCTATAAAAAATGACGAATGTGATGTTC-----CTTTTCTT--AGGTTATAGATTTAAC--ATATATTTGAAAC---ATAT-ACT----GT---ATGC----GTTACTAA-------CCATCTTATATGAGTCTTA-----T------ATTTTGTA-----TGATATTTTG---TCA-TA-T-ATTT--ATG-----TGAACTGAGTAAATTAAGAAatgactggttttatcggaaacacaagaaaccatatgaaaacacaaacatgtaccttttacgaacgtttctacg
gi|19 : aGATGAATGTCGCGCGC-----ATTTGTTT---GATAATAAAATTTAA--ATGAATTTGGTAT---GTAC-ATT----GT---ATAT----GTTACTAA-------CGATCTTATAT--------AT-ATTTT-TGAATTTTGTA-----TGTCTACATGATTTCA-TA-TAA--T--GTG-----TGAACCGAGTGAATAAACGAT-TTTAAAATGAA---
gi|2 : attcTGACTTC-GGTTGATATGTA-AAAAAATC---CTACTAAAACTAATATTGATTATTCATGTCACCTC----ATT----T--ATTT------T------GAGTTGTA-GTATTT-AATTAATA-TG---T-------A-----T-------T-GTTATTTTTTAAATATCATTG-TTGGATAGTACA--GTA-A-A---TA--TTCCAA-TAACA--AT-AAAATCGAC-TAAAT--TAAATG-TGAGTATGA-TGTCAAAT-AGAAAATG-----TCAAATTAAA-T-G-----AATATGAGTATA---TAATTTGTGGAACTCTCCCACTGAAGTTGACGATTGTGATGCTA-----GTTTTCTC--AGGCTAAAGATTTTGA--ATATATTTCAAAA---GTGT-TAT----AC---ATAC----ACTACTTA-------CCATCTTACAAGAGCCTTAAC-AC-TT-ACAATTTTGCA-----TTCCCTCATGATTGCA-TGTT-AT-T--ATA-----TGAACCGAG-AAATAAAGGAT-ATTGACTTGAA---TTGaagaaattcaatgaaatacaacaaa
gi|20 : taatgacactcttaacaatactgataactaatattactgttaaacgctccataaaatcaatcactgtgtgacaaatttataaaaaaatatgccaagtgagaattatataagcacatgcaagaccgTTTGAA---TGTATTTGAAAT---ACAT-GCT----GT---ACAC----GCTACTAA-------CCATCTACTATGTCCCTTAAC-ACTTC-ACAAGTTTGCA-----CGAGCCCGTGATTTCA-TG-T-AT-T--ATG-----TG-ATTATGTGAACAa
gi|22 : tattTTTG-----TATATC--AAATGTAATAT-GTT----GT---ATACCTACATTACTAA-------TC-TCCCATACGACCCTTAAG-ACTTT-GCAATTTTGCA-----TGACCTCATGATTTCG-TG-T-cacaggcggcagtatcggtgtttggattaccccctttaccgattaaaaaaaaaa
gi|23 : caaatgcattttttaagccatatcctctgCCT--AGGTTATGAATCTGAA--ATATCTTTAAGAT---ATAT-GCT----GT---TTAC----GTTACTAA-------CCATCTTATATGAGCCTTAAC-ACTTT-ACTACTTTGAA-----TGACCTCGTGTTTTCA-TG-T-A--T--ATG-----TGGACTGAGTGAATAAtcaatgaaa
gi|24 : ----T--ATTT------C-------------A-ATACTT-ATT--A-T-TA---T-------AAAT--T-------T-GTTGTCG----------ATTAATTAGATAGCAAGT-GTA-A-A---TATTTC--AA-TATCA--AG-AAAATCGAC-TGAAC--TAA-CTGTATGTAGGA-TGTCGAATAGTTA
gi|25 : ggtat----GTTACTAT-------CAAT-TTA-ATGAGCATTACA-ACTTTTATAATTTTTAA-----TAAACTCAAGATTTCATTG-T-A--T--ATA-----TGAACTGAttgttaagt
gi|26 : tacatacatattTCATGATTTCA-TG-T-T--T---TA-----TGAACTAAGTGAAT-AACGATAATTGAATTG
gi|27 : aatcagcgacattcagaatgtcgtgtaagcagT-GCT----GT---ATGC----GTTACTAA-------CCATTTTATATGAGCCTTTAT-GCGTT-ACATTTGTGCA-----TGACCTCACAATGTC
gi|28 : ACGTCATGATTACAATA-T-T--T--ATA-----TGAGATGGGTGAATAAATGAT-ATTGTAATGTA---TTGt
gi|29 : CCTCATGATTTCA-TG-C-A--TT-ATG-----TAAATTGAGTGAATGAAGGGT-ATCGAATCGAA---CTG
gi|3 : -AAATAACTATGCGACTAAAATTCCTATTGATTATTGTTGTCATCACGAATATCACAAT--ATTT------TCGAATTG-----TA-CTATTTCAAC--ACT-TA---CTGTAATTA-----T-------TTGTTATCC----------ATTG-TTGGACTGTAGGT-GTTTATA---T---TT--GAATAATA--AG-ATAATAAAT-TGAAG--TAA-TT-TGCGTATTT-TGTCAAAT-GTTATTGG-----CCAAAT-ATA-TTG-----AATATAAACATG---TATATCGTGGAACTCTCCCACAAAAAATGACAAATGT--TGTTC-----CTTTTCCT--AGGTTATGAATTTGAA--ATATCTTTGAAAT---GTAT-GCT----GT---ATAC----GTTACTTA-------CAATCGTATATGAACCCTAAC-ACT-------------------TGATTTCAT------A-TA-T-A--T--ATG-----TGAACTGAATGAATAA
gi|30 : taataagtttataaataataatacgatgtatatataacttcatactagtaagacagttacgttgctacctaataggccaataatAAAT-ATA-T-GTATTGAATATGATTTTA---TATTTCGTGGAGCTCTCCAACt
gi|4 : gaatattACTTCCGGTTGAATTATA-AAATAACTATGCGACTAAAATTTCTATTCATCATTGTTGTCATCAT----ATC----T--ATTT------TCGAATGG-----TA-CCATTT-CAA--ACC-TA---CA------A-----TAATAACAT-GTTATCG----------ATTT-TTGGACAGTAGAC-GTT-A-ATATT---TT--AA-TCATA--AG-TAAATGATT-TGAAC--TAA-TT-TGCGTTTAA-GGTCAAAT-GTTACAGG-----CCAAAT-ATATT-G-----AATATAACCATG---TATATCGTGGAAC--------------TAACAAATGT--TGTTC-----CTTTTCCT--AGGTTATGAA---------------TGAAAT---GTAT-GCT----GT---ATAT----GTTACTTA-------CCATCTTATATGAGCCTTAAC-AC----------------------------TGATTGCA-TG-T-A--T--ATG-----TGAACTGAGTGAATAAAGGAT-ATTGTATTGTA---TTGTATTGT
gi|5 : gacaattgtatccatacttttacgtgtgggaattctgtaaacagtctcaTGACTTCCGGTTGATACGTA-AAAGAAA-ACCCTACTAAAATTGCTATTGATTATTGTTGTCATCAC----ATG----T--ATTT------C-------------A-ATACTT-ATT--G-T-TA---T-------AAT---T-------T-GTTATCC----------ATTG-TTGGATAGCAAAT-AT------------------------------AAATG----TTAAA--TAG---------AAAA-TGTCGAAT-A-TAT--------CTA----ATA-T-G-----GATTT------G---TATTTCGTGGATATCACCCACTAAAAATGGCGACTGTGATGCTC-----TTTTTTCTC-AGGTTATtatt
gi|6 : taaaatagtaaataccagtcgtgaaccatttgtcatcattcatgcgttgtatatttcatttataaacatacaaaatacacttataacaatactgttaactaacaatacaattaaaacacttcgtaaaacaagaattgtgcgacaacttcttccaaaatatacccctataactaatggcatgaattTGACTTCCGGTTGAATTGTA-AAATAATTATGCGACTAAGATTCCTGTTGATTATTGTTGTCATCAC----ATC----T--ATTT------T------G-----TA-CTATTT-AAC--ACT-TA---C-------A-----T-------T-GTTATCC----------ATTG-TTAGACATTTGAT-GTT-A-AAA-T---TT--GA-TAATA--AG-AAAATGAAT-TGAAA--TAA-TT-TGCGTATAA-TGTCAAAT-GTTACAGG-----CCAAAC-ATA-T-G-----AATGGAACTATG---CATATCGAGGAACTCTCCCACAAAAACTGACAAATGT--TGTTC-----CATTTCCT--AGGTTATGAATTTGAA--CTATCTCTGAAAT---ATAT-GCT----GT---ATAC----GTTACTAA-------CCATCTTATATGAACAATAAC-ACTTT-ACAACTTTGCA-----TGACCTCATGACTGCA-GG-T-A--T--ATA-----TGAAATGAGTGAATAAAGGAT-ATTGTTTTGTA---TTGTATTGTAagg
gi|7 : TGACTTCCGGTTGATATGTA-AAAGAAA-ACCCTACTAAAATTGCTATTGATTATTGTTGTCATCAC----ATG----T--ATTT------C----------------------AAT--ACT-TA-----------------T-------T-GTTAT-A----------ATT-------TATTATCC-ATT-A-----T---TG--GA-TAGCA--A---ATATAAATGTTAAA--TAG---------AAAA-TGTCGAAT------------------AT-AT--T-T-----AATATGGATTTG---TATTTCGTGGATATCATCCACTAAAAATGGCGACTGTGATGCTC-----TTTTTTCTC-AGGTTATt
gi|8 : aatagtaaataccagtcgtgaaccatttgtcatcattcatgcattgtatatttcattaataaacatacaaaatacacttataacaatactgttaactaacaatacaattaaaacacttcgtaaaacaagaattgtgcgacaacttcttccaaaatatacccctataactaatggcatgaattGACTTCCGGTTGAGTTGTA-AAATAACTATGCGACTAAA-TTCCTATTGACTATTGTTGTCATCAC----ATC----T--ATTTTCAAACT------G-----TACTTGTTC-AAT--AAT-TATTGT-------AATTATT-------T-GTTATCC----------ACTG-TTGGACAGTAAAT-GT--------T---TT--AA-TAATA--AG-AAAATCAAT-TGAAG--TAT-TT-TGCGTATAA-TATCAAAT-GTTTCGGG-----CCAAAT-ATACT-G-----AATATGACCATG---TATTTCGTTGAACTGACCAACAAAAATTTACCCATGTTATGTTC-----CTTTTCCC--AGATTATAAATTTAAA--ATATATTTGAAAT---ACAT-GCC----GT---ATAT----GTTACTAA-------CCATCTTATagg
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): ATAACCAGAGACATGTTTATATAATTAAGTCACTAAGCAAAGCAATATGTGATAATACTATAGTAAACATAACCAATAGTCACTAAGTGTCACGCAAACCAATATTTGATCAAAATATTGAACACTTAATAAAAGTGTCACTTTTCATATCTCGCGGGAGAAAAATCATGGCATGTCAGACGATTCTTCGACTTTAAAATAGCAAATATCAGCCGTGAACCATTTGTCATCATACATGCGTTGTATATTTCAGTTATATGCATACAAAGTGTGCTCTTAACAAAACTTTTAACTGATAACACTGTTAAAACACTTCGTAAAACAAGTATTGCGCGACAACTTTATAAAAAAATACACCAAATGGCATGAATTTGACTTCCGGTCGAT
Unaligned ( gi|21 ): AAATACCAGCCGTGGATCCGTTGTCAGCATACATGTTTGGTTTTAATCAATTAAACATGTATAATTGTATAATTTTGTCAATACAGACAGCTACCAATATTATCTATGACATCGTAAATGTTGGAATATATTGTGCGACATGTTTTCTAACATATA
Unaligned ( gi|31 ): GACATATCTACATCCAGGGGCGTAGCTAGCTATAAGTTATGTGCAGGAACA
Alignments
lowQualScore : 11111 99999999999999999999999999999999999999999999999999999999999 111111111111 44444444444444444444 1 11111 11111111111111 11 11111
lowQualScore : 11 4 1 55555 2 5 9999 88888 55 00000000000000000000000000000000000000000000000000000000000 8888 4 999999999999 55 55555555555555555555 3 1 55 888 0 4 0 1 555 33333 2 11 55 66666666666666 2 2 2 444 4 2 8 66666 00 0 33 444 2 5555 333 6666 6666666 2 7777 0 55555 4 2 2 33333 55555 3 1 3 0 666
lowQualScore : .. . . ..... . . .... ..... .. ........................................................... .... . ............ .. .................... . . .. ... . . . . ... ..... . .. .. .............. . . . ... . . . ..... .. . .. ... . .... ... .... ....... . .... . ..... . . . ..... ..... . . . . ...
lowQualScore : 22 4 0 99999 6 3 4444 66666 55 44444444444444444444444444444444444444444444444444444444444 5555 0 222222222222 66 77777777777777777777 6 8 00 555 1 5 9 0 555 33333 0 55 77 00000000000000 7 7 6 777 8 0 8 22222 33 7 44 444 4 0000 999 6666 8888888 2 3333 1 66666 0 0 0 66666 33333 3 7 3 5 444
consensus : TGACTTCCGGTTGATATGTA-AAANAANTACGCNACTAAAATTNCTATTGATTATTGTTGTCATCAC----ATC----T--ATTT------C------G-----TA-NTATTT-AAT--ACT-TA---C-------A-------T----T-GTTATCN----------ATTG-TTGGACAGTAGACGTT-A-A--T---TT--GA-TAACA--AG-AAAATNAAT-TNAAA--TAA-TT-TGCGTATAA-TGTCAAAT-GTTACAGG-----CCAAAT-ATATT-GAATATGACCATG---TATTTCGTGGAACTCTCCCACNAAAANTGACGAATGTGATGCTC-----CTTTTCCT--AGGTTATAAATTTGAA--ATATATTTGAAAT---ATAT-GCT----GT---ATAC----GTTACTAA-------CCATCTTATATGAGCCTTAAC-ACTTT-ACAATTTTGCA-----TGACCTCATGATTTCA-TG-T-A--T--ATG-----TGAACTGAGTGAATAAAGGAT-ATTGAAT-TGAA---TTGTATTGTA
Reference ( family-3523 ) : TGACTTCCGGTTGATATGTA-AAANAANTACGCNACTAAAATTNCTATTGATTATTGTTGTCATCAC----ATC----T--ATTT------C------G-----TA-NTATTT-AAT--ACT-TA---C-------A-------T----T-GTTATCN----------ATTG-TTGGACAGTAAACGTT-A-A--T---TT--GA-TAACA--AG-AAAATNAAT-TNAAA--TAA-TT-TGCGTATAA-TGTCAAAT-GTTACAGG-----CCAAAT-ATATT-GAATATGACCATG---TATTTCGTGGAACTCTCCCACNAAAANTGACGAATGTGATGCTC-----CTTTTCCT--AGGTTATAAATTTGAA--ATATATTTGAAAT---ATAT-GCT----GT---ATAC----GTTACTAA-------CCATCTTATATGAGCCTTAAC-ACTTT-ACAATTTTGCA-----TGACCTCATGATTTCA-TG-T-A--T--ATG-----TGAACTGAGTGAATAAAGGAT-ATTGAAT-TGAA---TTGTATTGTA
gi|1 : TGACTTCCGGTTAATATGTG-AAAGAAAT------------TT--TATTGATTATTGTTGTCATCAC----ATC----GAAATTT------C-------------A-ATACTT-AGT--GTTATA---C-------T-------T----T-GTTATTT----------CTTC-TTGGATATCAAATATA-A-A-------T--GA-CAAAT--AG-GAAAT---T-TCAAA--TAT-GT-TGAATAT
gi|1 : aagcactctgtataattcctttacataaccaatagtcacttagtgttatgcaaaccaatatgtgataataacattgaacatctgatattttaatcgccgttcaaaatcacacagaaataaaatgtcactaaagtcactttccgtatctcgcgggtgaaaaaatcatggcatgtcagacgattcttcgacatcaaaataataaataccagtcgtgaaccatttgtcatcatacatgcgttgtatatttcagttacatacatacaaaatactctcttaacaataatgttaactaataatgctgttaaaacacttcataatacgagtattgtgcgacaactttatccaaaatataccaaaagcaaatggcatgatttTATAAATGACAAAT------AGGAAATTTCAAAT-ATGTT-GAATATGGTTTTG---TGTTTTGTGGATATCTCCCACTAAAACTGACGAATGTGATGCTC-----TTTCTATT--ATGTTA-AAAggttttgtgttttgtggatatctcccactaaaactgacgaatgtgatgctctttctattatgttaaaagccc
gi|10 : aagcactctgtataattcctttacataaccaatagtcacttagtgttatgcaaaccaatatgtgataataacattgaacatctgatattttaatcgccgttcaaaatcacacagaaataaaatgtcactaaagtcactttccgtatctcgcgggtgaaaaaatcatggcatgtcagacgattcttcgacatcaaaataataaataccagtcgtgaaccatttgtcatcatacatgcgttgtatatttcagttacatacatacaaaatactctcttaacaataatgttaactaataatgctgttaaaacacttcataatacgagtattgtgcgacaactttatccaaaatataccaaaagcaaatggcatgattttgacttccggttaatatgtgaaagaaattttattgattattgttgtcatcacatcgaaatttcaatacttagtgttatactttgttatttcttcttggatatcaaaTTTGAAGCAAATATTAAAGAT---ACATTGCTTACAATGAAATACT---GTTACTAA-------CCATCTTATATAAGCCCTAACAAATAT-GCAATTATATA-----TGACCTCATGA-TTGA-TG-T-A-----ATGTTTTATGATCTGAGTGAATAAAGGTT-ATTGTAC-TGTATTGTTGTATTGTAgccc
gi|11 : atatcatataaatctcagtataaatagtatgtgaatttttcaaactgatagtcagtaagtttaaattatttttctcccaacaattt--T---TT--GA-CAATATAAGTAACATTC-T-TTAAACGTAA-TT-TGCGTATAA-TGTCAATT-GTTACAGG-----CAACAT-ATATT-GAATATAACCATG---TATTTCGTGGAACTTTCCCAC-AAAACTGACAAATG--AAGTTC-----CTTTTCCA--AGGTTATAAATTTAAA--ATATCTTTGAAAT---ATAT-GCT----GT---ATAC----GTTACTAAGTTTTAACGTTTTTATATGAGCCTGAAC-ACTTT-ATAATTTTGCA-----TGACCTCATGATTTTA-TG-T-A--T--ATG-----TGAACTGAGTGAATAAAGGaactatgtaatacacagagataatatattactaaacatgtacttacgatcacacgtctacat
gi|12 : gatttatgaaagtggagt-----CCAAATTATATT-GAATTTGATTATG---TAATTCGTGGAACTCTCCCACTAAAATTGACGAGTCTGATGCGC-----GTTTTCTC--AGGTTATAGATTTAAA--ACATATCCGAAAT---GTAT-TCT----AT---ATAC----GATATTTT-------ACGTCTTTTATGAGCCTCAAC-AC-TA-ACAATTGTGCA-----TGCCCTCATCTTTCCG-TG-T-ATTT--ATG-----TGAACTAAGTGAATTGAAAAT-AAGTAAC-TGAA---TTG
gi|13 : atatataatgtaacaatagacccctttCGGTCGATACGTATAAAGAAAAACCCTACTAAAATTGTTATTGACTATTGTTGTCATCAC----ACG----T--ATTT------CGA----G-----TT-GTGTTC-AAT--ACT-TA---CT------ATTATAATT----T-GTAATCT----------ATTG-TTGGATAGCA--------------------GA-T------------ATAAATGTCAAA--T--------TGTA-AA-TTTCAAAT---------------------ATATT-GAATATGGTTTTG---TATTTCGTGGAACTCTCCCACTAAAATTGTTGAATGTGATGCTCTTAGACTTTTTCTC-AGATTATAa
gi|14 : AT-ATATTTAAATAT-ACCATTAACTACTTCTCGGAACTCTCCCGCCAACATGGATGACTTTGACGCTC-----CCTTTCTC--TTGTTATCAATTTAAA--ATGTATTTAAAAT---ATAT-ATT----GT---ATAG----GTTACTAA-------CCATCTCACATGAGCCTTAAC-AC--------TTTTGCA-----TGACCTCATGATTTCA-TG-T-AT-T--GTG-----TGAACTGAGTGAATAAAGGTT-ATTGCAT-TGAA---TTGggccc
gi|15 : taatAACT-ATATT-GAATATAAGCATG---TATATCGTGGTACTCTCCCAAGAAAACTGACAAATGT--TGTTC-----CTTTTCCT--AGGTTATGAATCTGAA--ATATCTTTAAGAT---ATAT-GCT----GT---TTAC----GTTACTAA-------CCATCTTATATGAGCCTTAAC-ACTTT-ACAACTTTGCA-----TGACCTCGTGATTTCA-TG-T-A--T--ATG-----TGGACTGAGTGactttttttcaggttt
gi|16 : gaatataatacatgtattaTGACGAATGCTATGCTG-----TTTTTTTTTCAGAT-ATAGATTTAAG--ATATATTTTAAAT---GTAT------------------------ACCAA-------CCA-------------------ACTT--ACAGTTTTGCA-----TGTCCTCATAGTTTCA-TA-T-A--TTTATG-----TGAACTGAGTAAATAAAGGAA-AATGAAT-TGAA---TTG
gi|17 : agcaagaaaatcgactgcactaaatattatgtctgatgtaaattataaaatttcaaattgaatatata---ATGC----TTTATTCA-------CCATCTTAAATTAGCCATAAC-ACTTT-AAAATGTCGTAAACTATGCCCTCTTGATTTCA-TG-T-A--TTTATG-----TGAACTGAGTGAATAAAGGAT-ATTGAATATGAC---TGGTTTTAT
gi|18 : tacattatctgtcactggaagagtacTTACAGG-----CCAAAT-ATATC-GAATATGACCATG---TATTTCGTGAAAATCTCCTATAAAAAATGACGAATGTGATGTTC-----CTTTTCTT--AGGTTATAGATTTAAC--ATATATTTGAAAC---ATAT-ACT----GT---ATGC----GTTACTAA-------CCATCTTATATGAGTCTTA-----T------ATTTTGTA-----TGATATTTTG---TCA-TA-T-ATTT--ATG-----TGAACTGAGTAAATTAAGAAcggaaacacaagaaaccatatgaaaacacaaacatgtaccttttacgaacgtttctacg
gi|19 : aGATGAATGTCGCGCGC-----ATTTGTTT---GATAATAAAATTTAA--ATGAATTTGGTAT---GTAC-ATT----GT---ATAT----GTTACTAA-------CGATCTTATAT--------AT-ATTTT-TGAATTTTGTA-----TGTCTACATGATTTCA-TA-TAA--T--GTG-----TGAACCGAGTGAATAAACGAT-TTTAAAA-TGAA---
gi|2 : attcTGACTTC-GGTTGATATGTA-AAAAAATC---CTACTAAAACTAATATTGATTATTCATGTCACCTC----ATT----T--ATTT------T------GAGTTGTA-GTATTT-AATTAATA-TG---T-------A-------T----T-GTTATTTTTTAAATATCATTG-TTGGATAGTACA-GTA-A-A--TA--TTCCAA-TAACA--AT-AAAATCGAC-TAAAT--TAAATG-TGAGTATGA-TGTCAAAT-AGAAAATG-----TCAAAT-TAAAT-GAATATGAGTATA---TAATTTGTGGAACTCTCCCACTGAAGTTGACGATTGTGATGCTA-----GTTTTCTC--AGGCTAAAGATTTTGA--ATATATTTCAAAA---GTGT-TAT----AC---ATAC----ACTACTTA-------CCATCTTACAAGAGCCTTAAC-AC-TT-ACAATTTTGCA-----TTCCCTCATGATTGCA-TGTT-AT-T--ATA-----TGAACCGAG-AAATAAAGGAT-ATTGACT-TGAA---TTGaagaaattcaatgaaatacaacaaa
gi|20 : taatgacactcttaacaatactgataactaatattactgttaaacgctccataaaatcaatcactgtgtgacaaatttataaaaaaatatgccaagtgagaattatataagcacatgcaagaccgTTTGAA---TGTATTTGAAAT---ACAT-GCT----GT---ACAC----GCTACTAA-------CCATCTACTATGTCCCTTAAC-ACTTC-ACAAGTTTGCA-----CGAGCCCGTGATTTCA-TG-T-AT-T--ATG-----TG-ATTATGTGAACAa
gi|22 : tattTTTG-----TATATC--AAATGTAATAT-GTT----GT---ATACCTACATTACTAA-------TC-TCCCATACGACCCTTAAG-ACTTT-GCAATTTTGCA-----TGACCTCATGATTTCG-TG-T-cacaggcggcagtatcggtgtttggattaccccctttaccgattaaaaaaaaaa
gi|23 : caaatgcattttttaagccatatcctctgCCT--AGGTTATGAATCTGAA--ATATCTTTAAGAT---ATAT-GCT----GT---TTAC----GTTACTAA-------CCATCTTATATGAGCCTTAAC-ACTTT-ACTACTTTGAA-----TGACCTCGTGTTTTCA-TG-T-A--T--ATG-----TGGACTGAGTGAATAAtcaatgaaa
gi|24 : ----T--ATTT------C-------------A-ATACTT-ATT--A-T-TA---T-------AAAT----T----T-GTTGTCG----------ATTAATTAGATAGCAAGTGTA-A-A--TATTTC--AA-TATCA--AG-AAAATCGAC-TGAAC--TAA-CTGTATGTAGGA-TGTCGAATAGTTA
gi|25 : ggtat----GTTACTAT-------CAAT-TTA-ATGAGCATTACA-ACTTTTATAATTTTTAA-----TAAACTCAAGATTTCATTG-T-A--T--ATA-----TGAACTGAttgttaagt
gi|26 : tacatacatattTCATGATTTCA-TG-T-T--T---TA-----TGAACTAAGTGAAT-AACGATAATTGAAT-TG
gi|27 : aatcagcgacattcagaatgtcgtgtaagcagT-GCT----GT---ATGC----GTTACTAA-------CCATTTTATATGAGCCTTTAT-GCGTT-ACATTTGTGCA-----TGACCTCACAATGTC
gi|28 : ACGTCATGATTACAATA-T-T--T--ATA-----TGAGATGGGTGAATAAATGAT-ATTGTAA-TGTA---TTGt
gi|29 : CCTCATGATTTCA-TG-C-A--TT-ATG-----TAAATTGAGTGAATGAAGGGT-ATCGAAT-CGAA---CTG
gi|3 : -AAATAACTATGCGACTAAAATTCCTATTGATTATTGTTGTCATCACGAATATCACAAT--ATTT------TCGAATTG-----TA-CTATTTCAAC--ACT-TA---CTGTAATTA-------T----TTGTTATCC----------ATTG-TTGGACTGTAGGTGTTTATA--T---TT--GAATAATA--AG-ATAATAAAT-TGAAG--TAA-TT-TGCGTATTT-TGTCAAAT-GTTATTGG-----CCAAAT-ATATT-GAATATAAACATG---TATATCGTGGAACTCTCCCACAAAAAATGACAAATGT--TGTTC-----CTTTTCCT--AGGTTATGAATTTGAA--ATATCTTTGAAAT---GTAT-GCT----GT---ATAC----GTTACTTA-------CAATCGTATATGAACCCTAAC-ACT-------------------TGATTTCAT------A-TA-T-A--T--ATG-----TGAACTGAATGAATAA
gi|30 : taataagtttataaataataatacgatgtatatataacttcatactagtaagacagttacgttgctacctaataggccaataatAT-GTATT-GAATATGATTTTA---TATTTCGTGGAGCTCTCCAACt
gi|4 : gaatattaaatatACTTCCGGTTGAATTATA-AAATAACTATGCGACTAAAATTTCTATTCATCATTGTTGTCATCAT----ATC----T--ATTT------TCGAATGG-----TA-CCATTT-CAA--ACC-TA---C-------AATAA---TAACAT-GTTATCG----------ATTT-TTGGACAGTAGACGTT-A-A--TATTTT--AA-TCATA--AG-TAAATGATT-TGAAC--TAA-TT-TGCGTTTAA-GGTCAAAT-GTTACAGG-----CCAAAT-ATATT-GAATATAACCATG---TATATCGTGGAAC--------------TAACAAATGT--TGTTC-----CTTTTCCT--AGGTTATGAA---------------TGAAAT---GTAT-GCT----GT---ATAT----GTTACTTA-------CCATCTTATATGAGCCTTAAC-AC----------------------------TGATTGCA-TG-T-A--T--ATG-----TGAACTGAGTGAATAAAGGAT-ATTGTAT-TGTA---TTGTATTGT
gi|5 : gacaattgtatccatacttttacgtgtgggaattctgtaaacagtctcaTGACTTCCGGTTGATACGTA-AAAGAAA-ACCCTACTAAAATTGCTATTGATTATTGTTGTCATCAC----ATG----T--ATTT------C----------------------AAT--ACT-TA-------------------T----T-GTTATAA----------TTTG-TTATCCATT----GTT-G------------GA-TAGCA--A---ATATAAATGTTAAA--TAG------------A-----AAAT-GT------------CGAAT-ATATC-TAATATGGATTTG---TATTTCGTGGATATCACCCACTAAAAATGGCGACTGTGATGCTC-----TTTTTTCTC-AGGTTATAtatt
gi|6 : taaaatagtaaataccagtcgtgaaccatttgtcatcattcatgcgttgtatatttcatttataaacatacaaaatacacttataacaatactgttaactaacaatacaattaaaacacttcgtaaaacaagaattgtgcgacaacttcttccaaaatatacccctataactaatggcatgaattTGACTTCCGGTTGAATTGTA-AAATAATTATGCGACTAAGATTCCTGTTGATTATTGTTGTCATCAC----ATC----T--ATTT------T------G-----TA-CTATTT-AAC--ACT-TA---C-------A-------T----T-GTTATCC----------ATTG-TTAGACATTTGATGTT-A-AAAT---TT--GA-TAATA--AG-AAAATGAAT-TGAAA--TAA-TT-TGCGTATAA-TGTCAAAT-GTTACAGG-----CCAAAC-ATAT--GAATGGAACTATG---CATATCGAGGAACTCTCCCACAAAAACTGACAAATGT--TGTTC-----CATTTCCT--AGGTTATGAATTTGAA--CTATCTCTGAAAT---ATAT-GCT----GT---ATAC----GTTACTAA-------CCATCTTATATGAACAATAAC-ACTTT-ACAACTTTGCA-----TGACCTCATGACTGCA-GG-T-A--T--ATA-----TGAAATGAGTGAATAAAGGAT-ATTGTTT-TGTA---TTGTATTGTAgg
gi|7 : TGACTTCCGGTTGATATGTA-AAAGAAA-ACCCTACTAAAATTGCTATTGATTATTGTTGTCATCAC----ATG----T--ATTT------C----------------------AAT--ACT-TA-------------------T----T-GTTAT-A----------ATT-------TATTATCCATT-A----T---TG--GA-TAGCA--A---ATATAAATGTTAAA--TAG------------A-----AAAT-GT------------CGAAT-ATATT-TAATATGGATTTG---TATTTCGTGGATATCATCCACTAAAAATGGCGACTGTGATGCTC-----TTTTTTCTC-AGGTTATAt
gi|8 : aatagtaaataccagtcgtgaaccatttgtcatcattcatgcattgtatatttcattaataaacatacaaaatacacttataacaatactgttaactaacaatacaattaaaacacttcgtaaaacaagaattgtgcgacaacttcttccaaaatatacccctataactaatggcatgaattGACTTCCGGTTGAGTTGTA-AAATAACTATGCGACTAAA-TTCCTATTGACTATTGTTGTCATCAC----ATC----T--ATTTTCAAACT------G-----TACTTGTTC-AAT--AAT-TATTGT-------AATTAT--T----T-GTTATCC----------ACTG-TTGGACAGTAAATGT-------T---TT--AA-TAATA--AG-AAAATCAAT-TGAAG--TAT-TT-TGCGTATAA-TATCAAAT-GTTTCGGG-----CCAAAT-ATACT-GAATATGACCATG---TATTTCGTTGAACTGACCAACAAAAATTTACCCATGTTATGTTC-----CTTTTCCC--AGATTATAAATTTAAA--ATATATTTGAAAT---ACAT-GCC----GT---ATAT----GTTACTAA-------CCATCTTATgg
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): ATAACCAGAGACATGTTTATATAATTAAGTCACTAAGCAAAGCAATATGTGATAATACTATAGTAAACATAACCAATAGTCACTAAGTGTCACGCAAACCAATATTTGATCAAAATATTGAACACTTAATAAAAGTGTCACTTTTCATATCTCGCGGGAGAAAAATCATGGCATGTCAGACGATTCTTCGACTTTAAAATAGCAAATATCAGCCGTGAACCATTTGTCATCATACATGCGTTGTATATTTCAGTTATATGCATACAAAGTGTGCTCTTAACAAAACTTTTAACTGATAACACTGTTAAAACACTTCGTAAAACAAGTATTGCGCGACAACTTTATAAAAAAATACACCAAATGGCATGAATTTGACTTCCGGTCGAT
Unaligned ( gi|21 ): AAATACCAGCCGTGGATCCGTTGTCAGCATACATGTTTGGTTTTAATCAATTAAACATGTATAATTGTATAATTTTGTCAATACAGACAGCTACCAATATTATCTATGACATCGTAAATGTTGGAATATATTGTGCGACATGTTTTCTAACATATA
Unaligned ( gi|31 ): GACATATCTACATCCAGGGGCGTAGCTAGCTATAAGTTATGTGCAGGAACA
Alignments
lowQualScore : 11111 88888888888888888888888888888888888888888888888888888888888 11111111111 4444444444444444444444444444444444 11111 11111 22222222222222 11 11111
lowQualScore : 11 4 1 55555 2 5 9999 88888 55 44444444444444444444444444444444444444444444444444444444444 8888 4 88888888888 55 1 7777777777777777777777777777777777 22222 1 555 33333 2 1 3 00000000000000 2 2 2 444 4 2 8 66666 00 0 33 444 2 5555 333 6666 6666666 2 7777 0 55555 4 2 2 33333 55555 3 1 3 0 666
lowQualScore : .. . . ..... . . .... ..... .. ........................................................... .... . ........... .. . .................................. ..... . ... ..... . . . .............. . . . ... . . . ..... .. . .. ... . .... ... .... ....... . .... . ..... . . . ..... ..... . . . . ...
lowQualScore : 22 4 0 99999 6 3 4444 66666 55 99999999999999999999999999999999999999999999999999999999999 5555 0 55555555555 66 0 2222222222222222222222222222222222 55555 0 555 33333 0 2 6 55555555555555 7 7 6 777 8 0 8 22222 33 7 44 444 4 0000 999 6666 8888888 2 3333 1 66666 0 0 0 66666 33333 3 7 3 5 444
consensus : TGACTTCCGGTTGATATGTA-AAANAANTACGCNACTAAAATTNCTATTGATTATTGTTGTCATCAC----ATC----T--ATTT------C------G-----TA-NTATTT-AAT--ACT-TA---C-------AAT-----T----T-GTTATCC----------ATTG-TTGGATAGTAGATGTT-A-A--T---TT--GA-TAATA--AG-AAAATNAAT-TNAAA--TAA-TT-TGCGTATAA-TGTCAAAT-GTTACAGG-----CCAAAT-ATATT-GAATATGACCATG---TATTTCGTGGAACTCTCCCACNAAAANTGACGAATGTGATGCTC-----CTTTTCCT--AGGTTATAAATTTGAA--ATATATTTGAAAT---ATAT-GCT----GT---ATAC----GTTACTAA-------CCATCTTATATGAGCCTTAAC-ACTTT-ACAATTTTGCA-----TGACCTCATGATTTCA-TG-T-A--T--ATG-----TGAACTGAGTGAATAAAGGAT-ATTGAAT-TGAA---TTGTATTGTA
Reference ( family-3523 ) : TGACTTCCGGTTGATATGTA-AAANAANTACGCNACTAAAATTNCTATTGATTATTGTTGTCATCAC----ATC----T--ATTT------C------G-----TA-NTATTT-AAT--ACT-TA---C-------A-------T----T-GTTATCN----------ATTG-TTGGACAGTAGACGTT-A-A--T---TT--GA-TAACA--AG-AAAATNAAT-TNAAA--TAA-TT-TGCGTATAA-TGTCAAAT-GTTACAGG-----CCAAAT-ATATT-GAATATGACCATG---TATTTCGTGGAACTCTCCCACNAAAANTGACGAATGTGATGCTC-----CTTTTCCT--AGGTTATAAATTTGAA--ATATATTTGAAAT---ATAT-GCT----GT---ATAC----GTTACTAA-------CCATCTTATATGAGCCTTAAC-ACTTT-ACAATTTTGCA-----TGACCTCATGATTTCA-TG-T-A--T--ATG-----TGAACTGAGTGAATAAAGGAT-ATTGAAT-TGAA---TTGTATTGTA
gi|1 : TGACTTCCGGTTAATATGTG-AAAGAAAT------------TT--TATTGATTATTGTTGTCATCAC----ATC----GAAATTT------C-------------A-ATACTT-AGT--GTTATA---C-------T-------T----T-GTTATTT----------CTTC-TTGGATATCAAATATA-A-A-------T--GA-CAAAT--AG-GAAAT---T-TCAAA--TAT-GT-TGAATAT
gi|1 : aagcactctgtataattcctttacataaccaatagtcacttagtgttatgcaaaccaatatgtgataataacattgaacatctgatattttaatcgccgttcaaaatcacacagaaataaaatgtcactaaagtcactttccgtatctcgcgggtgaaaaaatcatggcatgtcagacgattcttcgacatcaaaataataaataccagtcgtgaaccatttgtcatcatacatgcgttgtatatttcagttacatacatacaaaatactctcttaacaataatgttaactaataatgctgttaaaacacttcataatacgagtattgtgcgacaactttatccaaaatataccaaaagcaaatggcatgatttTATAAATGACAAAT------AGGAAATTTCAAAT-ATGTT-GAATATGGTTTTG---TGTTTTGTGGATATCTCCCACTAAAACTGACGAATGTGATGCTC-----TTTCTATT--ATGTTA-AAAggttttgtgttttgtggatatctcccactaaaactgacgaatgtgatgctctttctattatgttaaaagccc
gi|10 : aagcactctgtataattcctttacataaccaatagtcacttagtgttatgcaaaccaatatgtgataataacattgaacatctgatattttaatcgccgttcaaaatcacacagaaataaaatgtcactaaagtcactttccgtatctcgcgggtgaaaaaatcatggcatgtcagacgattcttcgacatcaaaataataaataccagtcgtgaaccatttgtcatcatacatgcgttgtatatttcagttacatacatacaaaatactctcttaacaataatgttaactaataatgctgttaaaacacttcataatacgagtattgtgcgacaactttatccaaaatataccaaaagcaaatggcatgattttgacttccggttaatatgtgaaagaaattttattgattattgttgtcatcacatcgaaatttcaatacttagtgttatactttgttatttcttcttggatatcaaaTTTGAAGCAAATATTAAAGAT---ACATTGCTTACAATGAAATACT---GTTACTAA-------CCATCTTATATAAGCCCTAACAAATAT-GCAATTATATA-----TGACCTCATGA-TTGA-TG-T-A-----ATGTTTTATGATCTGAGTGAATAAAGGTT-ATTGTAC-TGTATTGTTGTATTGTAgccc
gi|11 : atatcatataaatctcagtataaatagtatgtgaatttttcaaactgatagtcagtaagtttaaattatttttctcccaacaatttGAAAGTGGA-GTT----------TT--GA-CAATATAAGTAACATTC-T-TTAAACGTAA-TT-TGCGTATAA-TGTCAATT-GTTACAGG-----CAACAT-ATATT-GAATATAACCATG---TATTTCGTGGAACTTTCCCAC-AAAACTGACAAATG--AAGTTC-----CTTTTCCA--AGGTTATAAATTTAAA--ATATCTTTGAAAT---ATAT-GCT----GT---ATAC----GTTACTAAGTTTTAACGTTTTTATATGAGCCTGAAC-ACTTT-ATAATTTTGCA-----TGACCTCATGATTTTA-TG-T-A--T--ATG-----TGAACTGAGTGAATAAAGGaactatgtaatacacagagataatatattactaaacatgtacttacgatcacacgtctacat
gi|12 : gatttat-----CCAAATTATATT-GAATTTGATTATG---TAATTCGTGGAACTCTCCCACTAAAATTGACGAGTCTGATGCGC-----GTTTTCTC--AGGTTATAGATTTAAA--ACATATCCGAAAT---GTAT-TCT----AT---ATAC----GATATTTT-------ACGTCTTTTATGAGCCTCAAC-AC-TA-ACAATTGTGCA-----TGCCCTCATCTTTCCG-TG-T-ATTT--ATG-----TGAACTAAGTGAATTGAAAAT-AAGTAAC-TGAA---TTG
gi|13 : atatataatgtaacaatagacccctttCGGTCGATACGTATAAAGAAAAACCCTACTAAAATTGTTATTGACTATTGTTGTCATCAC----ACG----T--ATTT------CGA----G-----TT-GTGTTC-AAT--ACT-TA---CT------ATTATAATT----T-GTAATCT----------ATTG-TTGGATAGCAGATAT-----------------------------AAATG----TCAAA--T--------TGTA-AA-TTTCAAAT---------------------ATATT-GAATATGGTTTTG---TATTTCGTGGAACTCTCCCACTAAAATTGTTGAATGTGATGCTCTTAGACTTTTTCTC-AGATTATAa
gi|14 : AT-ATATTTAAATAT-ACCATTAACTACTTCTCGGAACTCTCCCGCCAACATGGATGACTTTGACGCTC-----CCTTTCTC--TTGTTATCAATTTAAA--ATGTATTTAAAAT---ATAT-ATT----GT---ATAG----GTTACTAA-------CCATCTCACATGAGCCTTAAC-AC--------TTTTGCA-----TGACCTCATGATTTCA-TG-T-AT-T--GTG-----TGAACTGAGTGAATAAAGGTT-ATTGCAT-TGAA---TTGggccc
gi|15 : taatAACT-ATATT-GAATATAAGCATG---TATATCGTGGTACTCTCCCAAGAAAACTGACAAATGT--TGTTC-----CTTTTCCT--AGGTTATGAATCTGAA--ATATCTTTAAGAT---ATAT-GCT----GT---TTAC----GTTACTAA-------CCATCTTATATGAGCCTTAAC-ACTTT-ACAACTTTGCA-----TGACCTCGTGATTTCA-TG-T-A--T--ATG-----TGGACTGAGTGactttttttcaggttt
gi|16 : gaatataatacatgtattaTGACGAATGCTATGCTG-----TTTTTTTTTCAGAT-ATAGATTTAAG--ATATATTTTAAAT---GTAT------------------------ACCAA-------CCA-------------------ACTT--ACAGTTTTGCA-----TGTCCTCATAGTTTCA-TA-T-A--TTTATG-----TGAACTGAGTAAATAAAGGAA-AATGAAT-TGAA---TTG
gi|17 : agcaagaaaatcgactgcactaaatattatgtctgatgtaaattataaaatttcaaattgaatatata---ATGC----TTTATTCA-------CCATCTTAAATTAGCCATAAC-ACTTT-AAAATGTCGTAAACTATGCCCTCTTGATTTCA-TG-T-A--TTTATG-----TGAACTGAGTGAATAAAGGAT-ATTGAATATGAC---TGGTTTTAT
gi|18 : tacattatctgtcactggaagagtacTTACAGG-----CCAAAT-ATATC-GAATATGACCATG---TATTTCGTGAAAATCTCCTATAAAAAATGACGAATGTGATGTTC-----CTTTTCTT--AGGTTATAGATTTAAC--ATATATTTGAAAC---ATAT-ACT----GT---ATGC----GTTACTAA-------CCATCTTATATGAGTCTTA-----T------ATTTTGTA-----TGATATTTTG---TCA-TA-T-ATTT--ATG-----TGAACTGAGTAAATTAAGAAcggaaacacaagaaaccatatgaaaacacaaacatgtaccttttacgaacgtttctacg
gi|19 : aGATGAATGTCGCGCGC-----ATTTGTTT---GATAATAAAATTTAA--ATGAATTTGGTAT---GTAC-ATT----GT---ATAT----GTTACTAA-------CGATCTTATAT--------AT-ATTTT-TGAATTTTGTA-----TGTCTACATGATTTCA-TA-TAA--T--GTG-----TGAACCGAGTGAATAAACGAT-TTTAAAA-TGAA---
gi|2 : attcTGACTTC-GGTTGATATGTA-AAAAAATC---CTACTAAAACTAATATTGATTATTCATGTCACCTC----ATT----T--ATTT------T------GAGTTGTA-GTATTT-AATTAATA-TG---T-------A-------T----T-GTTATTTTTTAAATATCATTG-TTGGATAGTACA-GTA-A-A--TA--TTCCAA-TAACA--AT-AAAATCGAC-TAAAT--TAAATG-TGAGTATGA-TGTCAAAT-AGAAAATG-----TCAAAT-TAAAT-GAATATGAGTATA---TAATTTGTGGAACTCTCCCACTGAAGTTGACGATTGTGATGCTA-----GTTTTCTC--AGGCTAAAGATTTTGA--ATATATTTCAAAA---GTGT-TAT----AC---ATAC----ACTACTTA-------CCATCTTACAAGAGCCTTAAC-AC-TT-ACAATTTTGCA-----TTCCCTCATGATTGCA-TGTT-AT-T--ATA-----TGAACCGAG-AAATAAAGGAT-ATTGACT-TGAA---TTGaagaaattcaatgaaatacaacaaa
gi|20 : taatgacactcttaacaatactgataactaatattactgttaaacgctccataaaatcaatcactgtgtgacaaatttataaaaaaatatgccaagtgagaattatataagcacatgcaagaccgTTTGAA---TGTATTTGAAAT---ACAT-GCT----GT---ACAC----GCTACTAA-------CCATCTACTATGTCCCTTAAC-ACTTC-ACAAGTTTGCA-----CGAGCCCGTGATTTCA-TG-T-AT-T--ATG-----TG-ATTATGTGAACAa
gi|22 : tattTTTG-----TATATC--AAATGTAATAT-GTT----GT---ATACCTACATTACTAA-------TC-TCCCATACGACCCTTAAG-ACTTT-GCAATTTTGCA-----TGACCTCATGATTTCG-TG-T-cacaggcggcagtatcggtgtttggattaccccctttaccgattaaaaaaaaaa
gi|23 : caaatgcattttttaagccatatcctctgCCT--AGGTTATGAATCTGAA--ATATCTTTAAGAT---ATAT-GCT----GT---TTAC----GTTACTAA-------CCATCTTATATGAGCCTTAAC-ACTTT-ACTACTTTGAA-----TGACCTCGTGTTTTCA-TG-T-A--T--ATG-----TGGACTGAGTGAATAAtcaatgaaa
gi|24 : ----T--ATTT------C-------------A-ATACTT-ATT--A-T-TA---T-------AAAT----T----T-GTTGTCG----------ATTAATTAGATAGCAAGTGTA-A-A--TATTTC--AA-TATCA--AG-AAAATCGAC-TGAAC--TAA-CTGTATGTAGGA-TGTCGAATAGTTA
gi|25 : ggtat----GTTACTAT-------CAAT-TTA-ATGAGCATTACA-ACTTTTATAATTTTTAA-----TAAACTCAAGATTTCATTG-T-A--T--ATA-----TGAACTGAttgttaagt
gi|26 : tacatacatattTCATGATTTCA-TG-T-T--T---TA-----TGAACTAAGTGAAT-AACGATAATTGAAT-TG
gi|27 : aatcagcgacattcagaatgtcgtgtaagcagT-GCT----GT---ATGC----GTTACTAA-------CCATTTTATATGAGCCTTTAT-GCGTT-ACATTTGTGCA-----TGACCTCACAATGTC
gi|28 : ACGTCATGATTACAATA-T-T--T--ATA-----TGAGATGGGTGAATAAATGAT-ATTGTAA-TGTA---TTGt
gi|29 : CCTCATGATTTCA-TG-C-A--TT-ATG-----TAAATTGAGTGAATGAAGGGT-ATCGAAT-CGAA---CTG
gi|3 : -AAATAACTATGCGACTAAAATTCCTATTGATTATTGTTGTCATCACGAATATCACAAT--ATTT------TCGAATTG-----TA-CTATTTCAAC--ACT-TA---CTGTAATTA-------T----TTGTTATCC----------ATTG-TTGGACTGTAGGTGTTTATA--T---TT--GAATAATA--AG-ATAATAAAT-TGAAG--TAA-TT-TGCGTATTT-TGTCAAAT-GTTATTGG-----CCAAAT-ATATT-GAATATAAACATG---TATATCGTGGAACTCTCCCACAAAAAATGACAAATGT--TGTTC-----CTTTTCCT--AGGTTATGAATTTGAA--ATATCTTTGAAAT---GTAT-GCT----GT---ATAC----GTTACTTA-------CAATCGTATATGAACCCTAAC-ACT-------------------TGATTTCAT------A-TA-T-A--T--ATG-----TGAACTGAATGAATAA
gi|30 : taataagtttataaataataatacgatgtatatataacttcatactagtaagacagttacgttgctacctaataggccaataatAT-GTATT-GAATATGATTTTA---TATTTCGTGGAGCTCTCCAACt
gi|4 : gaatattaaatatACTTCCGGTTGAATTATA-AAATAACTATGCGACTAAAATTTCTATTCATCATTGTTGTCATCAT----ATC----T--ATTT------TCGAATGG-----TA-CCATTT-CAA--ACC-TA---C-------AATAA---TAACAT-GTTATCG----------ATTT-TTGGACAGTAGACGTT-A-A--TATTTT--AA-TCATA--AG-TAAATGATT-TGAAC--TAA-TT-TGCGTTTAA-GGTCAAAT-GTTACAGG-----CCAAAT-ATATT-GAATATAACCATG---TATATCGTGGAAC--------------TAACAAATGT--TGTTC-----CTTTTCCT--AGGTTATGAA---------------TGAAAT---GTAT-GCT----GT---ATAT----GTTACTTA-------CCATCTTATATGAGCCTTAAC-AC----------------------------TGATTGCA-TG-T-A--T--ATG-----TGAACTGAGTGAATAAAGGAT-ATTGTAT-TGTA---TTGTATTGT
gi|5 : gacaattgtatccatacttttacgtgtgggaattctgtaaacagtctcaTGACTTCCGGTTGATACGTA-AAAGAAA-ACCCTACTAAAATTGCTATTGATTATTGTTGTCATCAC----ATG----T--ATTT------C-------------A-ATACTT-ATT--G-T-TA---T-------AAT-----T----T-GTTATCC----------ATTG-TTGGATAGCA-------A-A--T-----------------------ATAAATGTTAAA--TAG---------AAAA-TGTCGAAT------------------AT-ATCT---AATATGGATTTG---TATTTCGTGGATATCACCCACTAAAAATGGCGACTGTGATGCTC-----TTTTTTCTC-AGGTTATAtatt
gi|6 : taaaatagtaaataccagtcgtgaaccatttgtcatcattcatgcgttgtatatttcatttataaacatacaaaatacacttataacaatactgttaactaacaatacaattaaaacacttcgtaaaacaagaattgtgcgacaacttcttccaaaatatacccctataactaatggcatgaattTGACTTCCGGTTGAATTGTA-AAATAATTATGCGACTAAGATTCCTGTTGATTATTGTTGTCATCAC----ATC----T--ATTT------T------G-----TA-CTATTT-AAC--ACT-TA---C-------A-------T----T-GTTATCC----------ATTG-TTAGACATTTGATGTT-A-AAAT---TT--GA-TAATA--AG-AAAATGAAT-TGAAA--TAA-TT-TGCGTATAA-TGTCAAAT-GTTACAGG-----CCAAAC-ATAT--GAATGGAACTATG---CATATCGAGGAACTCTCCCACAAAAACTGACAAATGT--TGTTC-----CATTTCCT--AGGTTATGAATTTGAA--CTATCTCTGAAAT---ATAT-GCT----GT---ATAC----GTTACTAA-------CCATCTTATATGAACAATAAC-ACTTT-ACAACTTTGCA-----TGACCTCATGACTGCA-GG-T-A--T--ATA-----TGAAATGAGTGAATAAAGGAT-ATTGTTT-TGTA---TTGTATTGTAgg
gi|7 : TGACTTCCGGTTGATATGTA-AAAGAAA-ACCCTACTAAAATTGCTATTGATTATTGTTGTCATCAC----ATG----T--ATTT------C----------------------AAT--ACT-TA-------------------T----T-GTTAT-A----------ATT-------TATTATCCATT-A----T---TG--GA-TAGCA--A---ATATAAATGTTAAA--TAG------------A-----AAAT-GT------------CGAAT-ATATT-TAATATGGATTTG---TATTTCGTGGATATCATCCACTAAAAATGGCGACTGTGATGCTC-----TTTTTTCTC-AGGTTATAt
gi|8 : aatagtaaataccagtcgtgaaccatttgtcatcattcatgcattgtatatttcattaataaacatacaaaatacacttataacaatactgttaactaacaatacaattaaaacacttcgtaaaacaagaattgtgcgacaacttcttccaaaatatacccctataactaatggcatgaattGACTTCCGGTTGAGTTGTA-AAATAACTATGCGACTAAA-TTCCTATTGACTATTGTTGTCATCAC----ATC----T--ATTTTCAAACT------G-----TACTTGTTC-AAT--AAT-TATTGT-------AATTAT--T----T-GTTATCC----------ACTG-TTGGACAGTAAATGT-------T---TT--AA-TAATA--AG-AAAATCAAT-TGAAG--TAT-TT-TGCGTATAA-TATCAAAT-GTTTCGGG-----CCAAAT-ATACT-GAATATGACCATG---TATTTCGTTGAACTGACCAACAAAAATTTACCCATGTTATGTTC-----CTTTTCCC--AGATTATAAATTTAAA--ATATATTTGAAAT---ACAT-GCC----GT---ATAT----GTTACTAA-------CCATCTTATgg
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): ATAACCAGAGACATGTTTATATAATTAAGTCACTAAGCAAAGCAATATGTGATAATACTATAGTAAACATAACCAATAGTCACTAAGTGTCACGCAAACCAATATTTGATCAAAATATTGAACACTTAATAAAAGTGTCACTTTTCATATCTCGCGGGAGAAAAATCATGGCATGTCAGACGATTCTTCGACTTTAAAATAGCAAATATCAGCCGTGAACCATTTGTCATCATACATGCGTTGTATATTTCAGTTATATGCATACAAAGTGTGCTCTTAACAAAACTTTTAACTGATAACACTGTTAAAACACTTCGTAAAACAAGTATTGCGCGACAACTTTATAAAAAAATACACCAAATGGCATGAATTTGACTTCCGGTCGAT
Unaligned ( gi|21 ): AAATACCAGCCGTGGATCCGTTGTCAGCATACATGTTTGGTTTTAATCAATTAAACATGTATAATTGTATAATTTTGTCAATACAGACAGCTACCAATATTATCTATGACATCGTAAATGTTGGAATATATTGTGCGACATGTTTTCTAACATATA
Unaligned ( gi|31 ): GACATATCTACATCCAGGGGCGTAGCTAGCTATAAGTTATGTGCAGGAACA
Alignments
lowQualScore : 11111 8888888888888888888888888888888888888888888888888888 22222222222 4444444444444444444 11111 11111 11111111111111 11 11111
lowQualScore : 11 4 1 55555 2 5 9999 99999 66 4444444444444444444444444444444444444444444444444444 33333333333 55 0 444 5555555555555555555 44 55 55 3 22222 1 555 33333 2 11 55 66666666666666 2 2 2 444 4 2 8 66666 00 0 33 444 2 5555 333 6666 6666666 2 7777 0 55555 4 2 2 33333 55555 3 1 3 0 666
lowQualScore : .. . . ..... . . .... ..... .. .................................................... ........... .. . ... ................... .. .. .. . ..... . ... ..... . .. .. .............. . . . ... . . . ..... .. . .. ... . .... ... .... ....... . .... . ..... . . . ..... ..... . . . . ...
lowQualScore : 22 4 0 99999 6 3 4444 66666 11 4444444444444444444444444444444444444444444444444444 22222222222 66 7 222 7777777777777777777 00 00 00 6 55555 0 555 33333 0 55 77 00000000000000 7 7 6 777 8 0 8 22222 33 7 44 444 4 0000 999 6666 8888888 2 3333 1 66666 0 0 0 66666 33333 3 7 3 5 444
consensus : TGACTTCCGGTTGATATGTA-AAANAANTACGCNACTAAAATTNCTATTGATTATTGTTGTCATCAC----ATC----T--ATTTC------G-----TACT-ATTT-AATACTTACT-T----A--AT---T----TGTTATC----------CATTG-TTGGATAGTAGATGTT-A---A--T---T--T--GA-TAATA--AG-AAA-ATNAAT-TNAAA--TAA-TT-TGCGTATAA-TGTCAAAT-GTTACAGG-----CCAAAT-ATATT-GAATATGACCATG---TATTTCGTGGAACTCTCCCACNAAAANTGACGAATGTGATGCTC-----CTTTTCCT--AGGTTATAAATTTGAA--ATATATTTGAAAT---ATAT-GCT----GT---ATAC----GTTACTAA-------CCATCTTATATGAGCCTTAAC-ACTTT-ACAATTTTGCA-----TGACCTCATGATTTCA-TG-T-A--T--ATG-----TGAACTGAGTGAATAAAGGAT-ATTGAAT-TGAA---TTGTATTGTA
Reference ( family-3523 ) : TGACTTCCGGTTGATATGTA-AAANAANTACGCNACTAAAATTNCTATTGATTATTGTTGTCATCAC----ATC----T--ATTTC------G-----TANT-ATTT-AATACTTAC-------A--AT---T----TGTTATC----------CATTG-TTGGATAGTAGATGTT-A---A--T---T--T--GA-TAATA--AG-AAA-ATNAAT-TNAAA--TAA-TT-TGCGTATAA-TGTCAAAT-GTTACAGG-----CCAAAT-ATATT-GAATATGACCATG---TATTTCGTGGAACTCTCCCACNAAAANTGACGAATGTGATGCTC-----CTTTTCCT--AGGTTATAAATTTGAA--ATATATTTGAAAT---ATAT-GCT----GT---ATAC----GTTACTAA-------CCATCTTATATGAGCCTTAAC-ACTTT-ACAATTTTGCA-----TGACCTCATGATTTCA-TG-T-A--T--ATG-----TGAACTGAGTGAATAAAGGAT-ATTGAAT-TGAA---TTGTATTGTA
gi|1 : TGACTTCCGGTTAATATGTG-AAAGAAAT------------TT--TATTGATTATTGTTGTCATCAC----ATC----GAAATTTC-------------AAT-ACTT-AGTG-TTAT-------A--CT---T----TGTTATT----------TCTTC-TTGGATATCAAATATA-A---A---------T--GA-CAAAT--AG-GAA-AT---T-TCAAA--TAT-GT-TGAATAT
gi|1 : aagcactctgtataattcctttacataaccaatagtcacttagtgttatgcaaaccaatatgtgataataacattgaacatctgatattttaatcgccgttcaaaatcacacagaaataaaatgtcactaaagtcactttccgtatctcgcgggtgaaaaaatcatggcatgtcagacgattcttcgacatcaaaataataaataccagtcgtgaaccatttgtcatcatacatgcgttgtatatttcagttacatacatacaaaatactctcttaacaataatgttaactaataatgctgttaaaacacttcataatacgagtattgtgcgacaactttatccaaaatataccaaaagcaaatggcatgatttTATAAATGACAAAT------AGGAAATTTCAAAT-ATGTT-GAATATGGTTTTG---TGTTTTGTGGATATCTCCCACTAAAACTGACGAATGTGATGCTC-----TTTCTATT--ATGTTA-AAAggttttgtgttttgtggatatctcccactaaaactgacgaatgtgatgctctttctattatgttaaaagccc
gi|10 : aagcactctgtataattcctttacataaccaatagtcacttagtgttatgcaaaccaatatgtgataataacattgaacatctgatattttaatcgccgttcaaaatcacacagaaataaaatgtcactaaagtcactttccgtatctcgcgggtgaaaaaatcatggcatgtcagacgattcttcgacatcaaaataataaataccagtcgtgaaccatttgtcatcatacatgcgttgtatatttcagttacatacatacaaaatactctcttaacaataatgttaactaataatgctgttaaaacacttcataatacgagtattgtgcgacaactttatccaaaatataccaaaagcaaatggcatgattttgacttccggttaatatgtgaaagaaattttattgattattgttgtcatcacatcgaaatttcaatacttagtgttatactttgttatttcttcttggatatcaaaTTTGAAGCAAATATTAAAGAT---ACATTGCTTACAATGAAATACT---GTTACTAA-------CCATCTTATATAAGCCCTAACAAATAT-GCAATTATATA-----TGACCTCATGA-TTGA-TG-T-A-----ATGTTTTATGATCTGAGTGAATAAAGGTT-ATTGTAC-TGTATTGTTGTATTGTAgccc
gi|11 : atatcatataaatctcagtataaatagtatgtgaatttttcaaactgatagtcagtaagtttaaattatttttctcccaacaatttGAAAGTGGA-GTT------------T--T--GA-CAATATAAGTAAC-ATTC-T-TTAAACGTAA-TT-TGCGTATAA-TGTCAATT-GTTACAGG-----CAACAT-ATATT-GAATATAACCATG---TATTTCGTGGAACTTTCCCAC-AAAACTGACAAATG--AAGTTC-----CTTTTCCA--AGGTTATAAATTTAAA--ATATCTTTGAAAT---ATAT-GCT----GT---ATAC----GTTACTAAGTTTTAACGTTTTTATATGAGCCTGAAC-ACTTT-ATAATTTTGCA-----TGACCTCATGATTTTA-TG-T-A--T--ATG-----TGAACTGAGTGAATAAAGGaactatgtaatacacagagataatatattactaaacatgtacttacgatcacacgtctacat
gi|12 : gatttat-----CCAAATTATATT-GAATTTGATTATG---TAATTCGTGGAACTCTCCCACTAAAATTGACGAGTCTGATGCGC-----GTTTTCTC--AGGTTATAGATTTAAA--ACATATCCGAAAT---GTAT-TCT----AT---ATAC----GATATTTT-------ACGTCTTTTATGAGCCTCAAC-AC-TA-ACAATTGTGCA-----TGCCCTCATCTTTCCG-TG-T-ATTT--ATG-----TGAACTAAGTGAATTGAAAAT-AAGTAAC-TGAA---TTG
gi|13 : atatataatgtaacaatagacccctttCGGTCGATACGTATAAAGAAAAACCCTACTAAAATTGTTATTGACTATTGTTGTCATCAC----ACG----T--ATTTCGA----G-----TTGT-GTTC-AATACTTACTATTAT-A--AT---T----TGTAATC----------TATTG-TTGGATAGCAGATAT---------------------------------AA-ATG----TCAAA--T--------TGTA-AA-TTTCAAAT---------------------ATATT-GAATATGGTTTTG---TATTTCGTGGAACTCTCCCACTAAAATTGTTGAATGTGATGCTCTTAGACTTTTTCTC-AGATTATAa
gi|14 : AT-ATATTTAAATAT-ACCATTAACTACTTCTCGGAACTCTCCCGCCAACATGGATGACTTTGACGCTC-----CCTTTCTC--TTGTTATCAATTTAAA--ATGTATTTAAAAT---ATAT-ATT----GT---ATAG----GTTACTAA-------CCATCTCACATGAGCCTTAAC-AC--------TTTTGCA-----TGACCTCATGATTTCA-TG-T-AT-T--GTG-----TGAACTGAGTGAATAAAGGTT-ATTGCAT-TGAA---TTGggccc
gi|15 : taatAACT-ATATT-GAATATAAGCATG---TATATCGTGGTACTCTCCCAAGAAAACTGACAAATGT--TGTTC-----CTTTTCCT--AGGTTATGAATCTGAA--ATATCTTTAAGAT---ATAT-GCT----GT---TTAC----GTTACTAA-------CCATCTTATATGAGCCTTAAC-ACTTT-ACAACTTTGCA-----TGACCTCGTGATTTCA-TG-T-A--T--ATG-----TGGACTGAGTGactttttttcaggttt
gi|16 : gaatataatacatgtattaTGACGAATGCTATGCTG-----TTTTTTTTTCAGAT-ATAGATTTAAG--ATATATTTTAAAT---GTAT------------------------ACCAA-------CCA-------------------ACTT--ACAGTTTTGCA-----TGTCCTCATAGTTTCA-TA-T-A--TTTATG-----TGAACTGAGTAAATAAAGGAA-AATGAAT-TGAA---TTG
gi|17 : agcaagaaaatcgactgcactaaatattatgtctgatgtaaattataaaatttcaaattgaatatata---ATGC----TTTATTCA-------CCATCTTAAATTAGCCATAAC-ACTTT-AAAATGTCGTAAACTATGCCCTCTTGATTTCA-TG-T-A--TTTATG-----TGAACTGAGTGAATAAAGGAT-ATTGAATATGAC---TGGTTTTAT
gi|18 : tacattatctgtcactggaagagtacTTACAGG-----CCAAAT-ATATC-GAATATGACCATG---TATTTCGTGAAAATCTCCTATAAAAAATGACGAATGTGATGTTC-----CTTTTCTT--AGGTTATAGATTTAAC--ATATATTTGAAAC---ATAT-ACT----GT---ATGC----GTTACTAA-------CCATCTTATATGAGTCTTA-----T------ATTTTGTA-----TGATATTTTG---TCA-TA-T-ATTT--ATG-----TGAACTGAGTAAATTAAGAAcggaaacacaagaaaccatatgaaaacacaaacatgtaccttttacgaacgtttctacg
gi|19 : aGATGAATGTCGCGCGC-----ATTTGTTT---GATAATAAAATTTAA--ATGAATTTGGTAT---GTAC-ATT----GT---ATAT----GTTACTAA-------CGATCTTATAT--------AT-ATTTT-TGAATTTTGTA-----TGTCTACATGATTTCA-TA-TAA--T--GTG-----TGAACCGAGTGAATAAACGAT-TTTAAAA-TGAA---
gi|2 : attcTGACTTC-GGTTGATATGTA-AAAAAATC---CTACTAAAACTAATATTGATTATTCATGTCACCTC----ATT----T--ATTTT------GAGTTGTAGT-ATTT-AAT---TAA-------T--ATGTAT----TGTTATTTTTTAAATATCATTG-TTGGATAGTACA-GTA-A---A--TA--T--TCCAA-TAACA--AT-AAA-ATCGAC-TAAAT--TAAATG-TGAGTATGA-TGTCAAAT-AGAAAATG-----TCAAAT-TAAAT-GAATATGAGTATA---TAATTTGTGGAACTCTCCCACTGAAGTTGACGATTGTGATGCTA-----GTTTTCTC--AGGCTAAAGATTTTGA--ATATATTTCAAAA---GTGT-TAT----AC---ATAC----ACTACTTA-------CCATCTTACAAGAGCCTTAAC-AC-TT-ACAATTTTGCA-----TTCCCTCATGATTGCA-TGTT-AT-T--ATA-----TGAACCGAG-AAATAAAGGAT-ATTGACT-TGAA---TTGaagaaattcaatgaaatacaacaaa
gi|20 : taatgacactcttaacaatactgataactaatattactgttaaacgctccataaaatcaatcactgtgtgacaaatttataaaaaaatatgccaagtgagaattatataagcacatgcaagaccgTTTGAA---TGTATTTGAAAT---ACAT-GCT----GT---ACAC----GCTACTAA-------CCATCTACTATGTCCCTTAAC-ACTTC-ACAAGTTTGCA-----CGAGCCCGTGATTTCA-TG-T-AT-T--ATG-----TG-ATTATGTGAACAa
gi|22 : tattTTTG-----TATATC--AAATGTAATAT-GTT----GT---ATACCTACATTACTAA-------TC-TCCCATACGACCCTTAAG-ACTTT-GCAATTTTGCA-----TGACCTCATGATTTCG-TG-T-cacaggcggcagtatcggtgtttggattaccccctttaccgattaaaaaaaaaa
gi|23 : caaatgcattttttaagccatatcctctgCCT--AGGTTATGAATCTGAA--ATATCTTTAAGAT---ATAT-GCT----GT---TTAC----GTTACTAA-------CCATCTTATATGAGCCTTAAC-ACTTT-ACTACTTTGAA-----TGACCTCGTGTTTTCA-TG-T-A--T--ATG-----TGGACTGAGTGAATAAtcaatgaaa
gi|24 : ------G-----TATT-ATTTCAATACTTATTATTATAA--AT---T----TGTTGTC----------GATTAATTAGATAGCAAGTGTA-A---A--TATTT--C--AA-TATCA--AG-AAA-ATCGAC-TGAAC--TAA-CTGTATGTAGGA-TGTCGAATAGTTA
gi|25 : g----GTTACTAT-------CAAT-TTA-ATGAGCATTACA-ACTTTTATAATTTTTAA-----TAAACTCAAGATTTCATTG-T-A--T--ATA-----TGAACTGAttgttaagt
gi|26 : tacatacatattTCATGATTTCA-TG-T-T--T---TA-----TGAACTAAGTGAAT-AACGATAATTGAAT-TG
gi|27 : aatcagcgacattcagaatgtcgtgtaagcagT-GCT----GT---ATGC----GTTACTAA-------CCATTTTATATGAGCCTTTAT-GCGTT-ACATTTGTGCA-----TGACCTCACAATGTC
gi|28 : ACGTCATGATTACAATA-T-T--T--ATA-----TGAGATGGGTGAATAAATGAT-ATTGTAA-TGTA---TTGt
gi|29 : CCTCATGATTTCA-TG-C-A--TT-ATG-----TAAATTGAGTGAATGAAGGGT-ATCGAAT-CGAA---CTG
gi|3 : -AAATAACTATGCGACTAAAATTCCTATTGATTATTGTTGTCATCACGAATATCACAAT--ATTTTCGAATTG-----TACT-ATTTCAACACTTACTGTA---ATTAT---T----TGTTATC----------CATTG-TTGGACTGTAGGTGTTTAT--A--T---T--T--GAATAATA--AG-ATA-ATAAAT-TGAAG--TAA-TT-TGCGTATTT-TGTCAAAT-GTTATTGG-----CCAAAT-ATATT-GAATATAAACATG---TATATCGTGGAACTCTCCCACAAAAAATGACAAATGT--TGTTC-----CTTTTCCT--AGGTTATGAATTTGAA--ATATCTTTGAAAT---GTAT-GCT----GT---ATAC----GTTACTTA-------CAATCGTATATGAACCCTAAC-ACT-------------------TGATTTCAT------A-TA-T-A--T--ATG-----TGAACTGAATGAATAA
gi|30 : taataagtttataaataataatacgatgtatatataacttcatactagtaagacagttacgttgctacctaataggccaataatAT-GTATT-GAATATGATTTTA---TATTTCGTGGAGCTCTCCAACt
gi|4 : gaatattaaatatACTTCCGGTTGAATTATA-AAATAACTATGCGACTAAAATTTCTATTCATCATTGTTGTCATCAT----ATC----T--ATTTTCGAATGG-----TACC-ATTT-CAAACCTAC-------A--ATAA-TAACATGTTATC----------GATTT-TTGGACAGTAGACGTT-A---A--TATTT--T--AA-TCATA--AG-TAA-ATGATT-TGAAC--TAA-TT-TGCGTTTAA-GGTCAAAT-GTTACAGG-----CCAAAT-ATATT-GAATATAACCATG---TATATCGTGGAAC--------------TAACAAATGT--TGTTC-----CTTTTCCT--AGGTTATGAA---------------TGAAAT---GTAT-GCT----GT---ATAT----GTTACTTA-------CCATCTTATATGAGCCTTAAC-AC----------------------------TGATTGCA-TG-T-A--T--ATG-----TGAACTGAGTGAATAAAGGAT-ATTGTAT-TGTA---TTGTATTGT
gi|5 : gacaattgtatccatacttttacgtgtgggaattctgtaaacagtctcaTGACTTCCGGTTGATACGTA-AAAGAAA-ACCCTACTAAAATTGCTATTGATTATTGTTGTCATCAC----ATG----T--ATT---------------------TC-AATACTT----------------------------------------ATTG-TT--ATAATT--TGTT-ATCCA--T---TGTT--GG---ATA--GC-AAATATAAATGTTAAA--TAG------------A-----AAAT-GT------------CGAAT-ATATC-TAATATGGATTTG---TATTTCGTGGATATCACCCACTAAAAATGGCGACTGTGATGCTC-----TTTTTTCTC-AGGTTATAtatt
gi|6 : taaaatagtaaataccagtcgtgaaccatttgtcatcattcatgcgttgtatatttcatttataaacatacaaaatacacttataacaatactgttaactaacaatacaattaaaacacttcgtaaaacaagaattgtgcgacaacttcttccaaaatatacccctataactaatggcatgaattTGACTTCCGGTTGAATTGTA-AAATAATTATGCGACTAAGATTCCTGTTGATTATTGTTGTCATCAC----ATC----T--ATTTT------G-----TACT-ATTT-AACACTTAC-------A-------T----TGTTATC----------CATTG-TTAGACATTTGATGTT-A---AAAT---T--T--GA-TAATA--AG-AAA-ATGAAT-TGAAA--TAA-TT-TGCGTATAA-TGTCAAAT-GTTACAGG-----CCAAAC-ATAT--GAATGGAACTATG---CATATCGAGGAACTCTCCCACAAAAACTGACAAATGT--TGTTC-----CATTTCCT--AGGTTATGAATTTGAA--CTATCTCTGAAAT---ATAT-GCT----GT---ATAC----GTTACTAA-------CCATCTTATATGAACAATAAC-ACTTT-ACAACTTTGCA-----TGACCTCATGACTGCA-GG-T-A--T--ATA-----TGAAATGAGTGAATAAAGGAT-ATTGTTT-TGTA---TTGTATTGTAgg
gi|7 : TGACTTCCGGTTGATATGTA-AAAGAAA-ACCCTACTAAAATTGCTATTGATTATTGTTGTCATCAC----ATG----T--ATTTC----------------------AATACTTA----------------T----TGTTATA-----------ATT-------TATTATCCATT-A------T---T--G--GA-TAGCA--A---AT-ATAAATGTTAAA--TAG------------A-----AAAT-GT------------CGAAT-ATATT-TAATATGGATTTG---TATTTCGTGGATATCATCCACTAAAAATGGCGACTGTGATGCTC-----TTTTTTCTC-AGGTTATAt
gi|8 : aatagtaaataccagtcgtgaaccatttgtcatcattcatgcattgtatatttcattaataaacatacaaaatacacttataacaatactgttaactaacaatacaattaaaacacttcgtaaaacaagaattgtgcgacaacttcttccaaaatatacccctataactaatggcatgaattGACTTCCGGTTGAGTTGTA-AAATAACTATGCGACTAAA-TTCCTATTGACTATTGTTGTCATCAC----ATC----T--ATTTTCAAACTG-----TACTTGTTC-AATAATTATTGTA---ATTAT---T----TGTTATC----------CACTG-TTGGACAGTAAATGTT------------T--T--AA-TAATA--AG-AAA-ATCAAT-TGAAG--TAT-TT-TGCGTATAA-TATCAAAT-GTTTCGGG-----CCAAAT-ATACT-GAATATGACCATG---TATTTCGTTGAACTGACCAACAAAAATTTACCCATGTTATGTTC-----CTTTTCCC--AGATTATAAATTTAAA--ATATATTTGAAAT---ACAT-GCC----GT---ATAT----GTTACTAA-------CCATCTTATgg
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): ATAACCAGAGACATGTTTATATAATTAAGTCACTAAGCAAAGCAATATGTGATAATACTATAGTAAACATAACCAATAGTCACTAAGTGTCACGCAAACCAATATTTGATCAAAATATTGAACACTTAATAAAAGTGTCACTTTTCATATCTCGCGGGAGAAAAATCATGGCATGTCAGACGATTCTTCGACTTTAAAATAGCAAATATCAGCCGTGAACCATTTGTCATCATACATGCGTTGTATATTTCAGTTATATGCATACAAAGTGTGCTCTTAACAAAACTTTTAACTGATAACACTGTTAAAACACTTCGTAAAACAAGTATTGCGCGACAACTTTATAAAAAAATACACCAAATGGCATGAATTTGACTTCCGGTCGAT
Unaligned ( gi|21 ): AAATACCAGCCGTGGATCCGTTGTCAGCATACATGTTTGGTTTTAATCAATTAAACATGTATAATTGTATAATTTTGTCAATACAGACAGCTACCAATATTATCTATGACATCGTAAATGTTGGAATATATTGTGCGACATGTTTTCTAACATATA
Unaligned ( gi|31 ): GACATATCTACATCCAGGGGCGTAGCTAGCTATAAGTTATGTGCAGGAACA
Alignments
lowQualScore : 11111 66666666666666666666666666666666666666666666666 22222222222 33333333333 11111 11111111111111 11 11111
lowQualScore : 11 4 1 55555 2 5 9999 99999 66 44444444444444444444444444444444444444444444444 00000000000 55 0 2 99999999999 555 44 55 3 77777 1 555 88888 0 7 11111111111111 2 2 2 444 4 2 8 66666 00 0 33 444 2 5555 333 6666 6666666 2 7777 0 55555 4 2 2 33333 55555 3 1 3 0 666
lowQualScore : .. . . ..... . . .... ..... .. ............................................... ........... .. . . ........... ... .. .. . ..... . ... ..... . . .............. . . . ... . . . ..... .. . .. ... . .... ... .... ....... . .... . ..... . . . ..... ..... . . . . ...
lowQualScore : 22 4 0 99999 6 3 4444 66666 11 44444444444444444444444444444444444444444444444 77777777777 66 4 6 66666666666 444 00 00 6 66666 0 555 55555 7 3 11111111111111 7 7 6 777 8 0 8 22222 33 7 44 444 4 0000 999 6666 8888888 2 3333 1 66666 0 0 0 66666 33333 3 7 3 5 444
consensus : TGACTTCCGGTTGATATGTA-AAANAANTACGCNACTAAAATTNCTATTGATTATTGTTGTCATCAC----ATC----T--ATTTC------GTACT-ATTT-AATACTTAC--TG---TAA-T-----T---TGTTATC----------CATTG-TTGGATAGTAGATGTT-A-A--T---TT--GA-TAATA--AG-AAAATNAAT-TNAAA--TAA-TT-TGCGTATAA-TGTCAAAT-GTTACAGG-----CCAAAT-ATATT-GAATATGACCATG---TATTTCGTGGAACTCTCCCACNAAAANTGACGAATGTGATGCTC-----CTTTTCCT--AGGTTATAAATTTGAA--ATATATTTGAAAT---ATAT-GCT----GT---ATAC----GTTACTAA-------CCATCTTATATGAGCCTTAAC-ACTTT-ACAATTTTGCA-----TGACCTCATGATTTCA-TG-T-A--T--ATG-----TGAACTGAGTGAATAAAGGAT-ATTGAAT-TGAA---TTGTATTGTA
Reference ( family-3523 ) : TGACTTCCGGTTGATATGTA-AAANAANTACGCNACTAAAATTNCTATTGATTATTGTTGTCATCAC----ATC----T--ATTTC------GTACT-ATTT-AATACTTAC--T----TAA-T-----T---TGTTATC----------CATTG-TTGGATAGTAGATGTT-A-A--T---TT--GA-TAATA--AG-AAAATNAAT-TNAAA--TAA-TT-TGCGTATAA-TGTCAAAT-GTTACAGG-----CCAAAT-ATATT-GAATATGACCATG---TATTTCGTGGAACTCTCCCACNAAAANTGACGAATGTGATGCTC-----CTTTTCCT--AGGTTATAAATTTGAA--ATATATTTGAAAT---ATAT-GCT----GT---ATAC----GTTACTAA-------CCATCTTATATGAGCCTTAAC-ACTTT-ACAATTTTGCA-----TGACCTCATGATTTCA-TG-T-A--T--ATG-----TGAACTGAGTGAATAAAGGAT-ATTGAAT-TGAA---TTGTATTGTA
gi|1 : TGACTTCCGGTTAATATGTG-AAAGAAAT------------TT--TATTGATTATTGTTGTCATCAC----ATC----GAAATTTC--------AAT-ACTT-AGTG-TTA--------TAC-T-----T---TGTTATT----------TCTTC-TTGGATATCAAATATA-A-A-------T--GA-CAAAT--AG-GAAAT---T-TCAAA--TAT-GT-TGAATAT
gi|1 : aagcactctgtataattcctttacataaccaatagtcacttagtgttatgcaaaccaatatgtgataataacattgaacatctgatattttaatcgccgttcaaaatcacacagaaataaaatgtcactaaagtcactttccgtatctcgcgggtgaaaaaatcatggcatgtcagacgattcttcgacatcaaaataataaataccagtcgtgaaccatttgtcatcatacatgcgttgtatatttcagttacatacatacaaaatactctcttaacaataatgttaactaataatgctgttaaaacacttcataatacgagtattgtgcgacaactttatccaaaatataccaaaagcaaatggcatgatttTATAAATGACAAAT------AGGAAATTTCAAAT-ATGTT-GAATATGGTTTTG---TGTTTTGTGGATATCTCCCACTAAAACTGACGAATGTGATGCTC-----TTTCTATT--ATGTTA-AAAggttttgtgttttgtggatatctcccactaaaactgacgaatgtgatgctctttctattatgttaaaagccc
gi|10 : aagcactctgtataattcctttacataaccaatagtcacttagtgttatgcaaaccaatatgtgataataacattgaacatctgatattttaatcgccgttcaaaatcacacagaaataaaatgtcactaaagtcactttccgtatctcgcgggtgaaaaaatcatggcatgtcagacgattcttcgacatcaaaataataaataccagtcgtgaaccatttgtcatcatacatgcgttgtatatttcagttacatacatacaaaatactctcttaacaataatgttaactaataatgctgttaaaacacttcataatacgagtattgtgcgacaactttatccaaaatataccaaaagcaaatggcatgattttgacttccggttaatatgtgaaagaaattttattgattattgttgtcatcacatcgaaatttcaatacttagtgttatactttgttatttcttcttggatatcaaaTTTGAAGCAAATATTAAAGAT---ACATTGCTTACAATGAAATACT---GTTACTAA-------CCATCTTATATAAGCCCTAACAAATAT-GCAATTATATA-----TGACCTCATGA-TTGA-TG-T-A-----ATGTTTTATGATCTGAGTGAATAAAGGTT-ATTGTAC-TGTATTGTTGTATTGTAgccc
gi|11 : atatcatataaatctcagtataaatagtatgtgaatttttcaaactgatagtcagtaagtttaaattatttttctcccaacaatttGAAAGTGGA-GTT----------TT--GA-CAATATAAGTAACATTC-T-TTAAACGTAA-TT-TGCGTATAA-TGTCAATT-GTTACAGG-----CAACAT-ATATT-GAATATAACCATG---TATTTCGTGGAACTTTCCCAC-AAAACTGACAAATG--AAGTTC-----CTTTTCCA--AGGTTATAAATTTAAA--ATATCTTTGAAAT---ATAT-GCT----GT---ATAC----GTTACTAAGTTTTAACGTTTTTATATGAGCCTGAAC-ACTTT-ATAATTTTGCA-----TGACCTCATGATTTTA-TG-T-A--T--ATG-----TGAACTGAGTGAATAAAGGaactatgtaatacacagagataatatattactaaacatgtacttacgatcacacgtctacat
gi|12 : gatttat-----CCAAATTATATT-GAATTTGATTATG---TAATTCGTGGAACTCTCCCACTAAAATTGACGAGTCTGATGCGC-----GTTTTCTC--AGGTTATAGATTTAAA--ACATATCCGAAAT---GTAT-TCT----AT---ATAC----GATATTTT-------ACGTCTTTTATGAGCCTCAAC-AC-TA-ACAATTGTGCA-----TGCCCTCATCTTTCCG-TG-T-ATTT--ATG-----TGAACTAAGTGAATTGAAAAT-AAGTAAC-TGAA---TTG
gi|13 : atatataatgtaacaatagacccctttCGGTCGATACGTATAAAGAAAAACCCTACTAAAATTGTTATTGACTATTGTTGTCATCAC----ACG----T--ATTTCGA----GTTGT-GTTC-AATACTTAC--TATTATAA-T-----T---TGTAATC----------TATTG-TTGGATAGCAGATAT-----------------------------AAATG----TCAAA--T--------TGTA-AA-TTTCAAAT---------------------ATATT-GAATATGGTTTTG---TATTTCGTGGAACTCTCCCACTAAAATTGTTGAATGTGATGCTCTTAGACTTTTTCTC-AGATTATAa
gi|14 : AT-ATATTTAAATAT-ACCATTAACTACTTCTCGGAACTCTCCCGCCAACATGGATGACTTTGACGCTC-----CCTTTCTC--TTGTTATCAATTTAAA--ATGTATTTAAAAT---ATAT-ATT----GT---ATAG----GTTACTAA-------CCATCTCACATGAGCCTTAAC-AC--------TTTTGCA-----TGACCTCATGATTTCA-TG-T-AT-T--GTG-----TGAACTGAGTGAATAAAGGTT-ATTGCAT-TGAA---TTGggccc
gi|15 : taatAACT-ATATT-GAATATAAGCATG---TATATCGTGGTACTCTCCCAAGAAAACTGACAAATGT--TGTTC-----CTTTTCCT--AGGTTATGAATCTGAA--ATATCTTTAAGAT---ATAT-GCT----GT---TTAC----GTTACTAA-------CCATCTTATATGAGCCTTAAC-ACTTT-ACAACTTTGCA-----TGACCTCGTGATTTCA-TG-T-A--T--ATG-----TGGACTGAGTGactttttttcaggttt
gi|16 : gaatataatacatgtattaTGACGAATGCTATGCTG-----TTTTTTTTTCAGAT-ATAGATTTAAG--ATATATTTTAAAT---GTAT------------------------ACCAA-------CCA-------------------ACTT--ACAGTTTTGCA-----TGTCCTCATAGTTTCA-TA-T-A--TTTATG-----TGAACTGAGTAAATAAAGGAA-AATGAAT-TGAA---TTG
gi|17 : agcaagaaaatcgactgcactaaatattatgtctgatgtaaattataaaatttcaaattgaatatata---ATGC----TTTATTCA-------CCATCTTAAATTAGCCATAAC-ACTTT-AAAATGTCGTAAACTATGCCCTCTTGATTTCA-TG-T-A--TTTATG-----TGAACTGAGTGAATAAAGGAT-ATTGAATATGAC---TGGTTTTAT
gi|18 : tacattatctgtcactggaagagtacTTACAGG-----CCAAAT-ATATC-GAATATGACCATG---TATTTCGTGAAAATCTCCTATAAAAAATGACGAATGTGATGTTC-----CTTTTCTT--AGGTTATAGATTTAAC--ATATATTTGAAAC---ATAT-ACT----GT---ATGC----GTTACTAA-------CCATCTTATATGAGTCTTA-----T------ATTTTGTA-----TGATATTTTG---TCA-TA-T-ATTT--ATG-----TGAACTGAGTAAATTAAGAAcggaaacacaagaaaccatatgaaaacacaaacatgtaccttttacgaacgtttctacg
gi|19 : aGATGAATGTCGCGCGC-----ATTTGTTT---GATAATAAAATTTAA--ATGAATTTGGTAT---GTAC-ATT----GT---ATAT----GTTACTAA-------CGATCTTATAT--------AT-ATTTT-TGAATTTTGTA-----TGTCTACATGATTTCA-TA-TAA--T--GTG-----TGAACCGAGTGAATAAACGAT-TTTAAAA-TGAA---
gi|2 : attcTGACTTC-GGTTGATATGTA-AAAAAATC---CTACTAAAACTAATATTGATTATTCATGTCACCTC----ATT----T--ATTTT------G-AGT--TGT-AGTATTTAA--T----TAA-TATGTAT---TGTTATTTTTTAAATATCATTG-TTGGATAGTACA-GTA-A-A--TA--TTCCAA-TAACA--AT-AAAATCGAC-TAAAT--TAAATG-TGAGTATGA-TGTCAAAT-AGAAAATG-----TCAAAT-TAAAT-GAATATGAGTATA---TAATTTGTGGAACTCTCCCACTGAAGTTGACGATTGTGATGCTA-----GTTTTCTC--AGGCTAAAGATTTTGA--ATATATTTCAAAA---GTGT-TAT----AC---ATAC----ACTACTTA-------CCATCTTACAAGAGCCTTAAC-AC-TT-ACAATTTTGCA-----TTCCCTCATGATTGCA-TGTT-AT-T--ATA-----TGAACCGAG-AAATAAAGGAT-ATTGACT-TGAA---TTGaagaaattcaatgaaatacaacaaa
gi|20 : taatgacactcttaacaatactgataactaatattactgttaaacgctccataaaatcaatcactgtgtgacaaatttataaaaaaatatgccaagtgagaattatataagcacatgcaagaccgTTTGAA---TGTATTTGAAAT---ACAT-GCT----GT---ACAC----GCTACTAA-------CCATCTACTATGTCCCTTAAC-ACTTC-ACAAGTTTGCA-----CGAGCCCGTGATTTCA-TG-T-AT-T--ATG-----TG-ATTATGTGAACAa
gi|22 : tattTTTG-----TATATC--AAATGTAATAT-GTT----GT---ATACCTACATTACTAA-------TC-TCCCATACGACCCTTAAG-ACTTT-GCAATTTTGCA-----TGACCTCATGATTTCG-TG-T-cacaggcggcagtatcggtgtttggattaccccctttaccgattaaaaaaaaaa
gi|23 : caaatgcattttttaagccatatcctctgCCT--AGGTTATGAATCTGAA--ATATCTTTAAGAT---ATAT-GCT----GT---TTAC----GTTACTAA-------CCATCTTATATGAGCCTTAAC-ACTTT-ACTACTTTGAA-----TGACCTCGTGTTTTCA-TG-T-A--T--ATG-----TGGACTGAGTGAATAAtcaatgaaa
gi|24 : ------GTATT-ATTTCAATACTTAT--TATTATAAAT-----T---TGTTGTC----------GATTAATTAGATAGCAAGTGTA-A-A--TATTTC--AA-TATCA--AG-AAAATCGAC-TGAAC--TAA-CTGTATGTAGGA-TGTCGAATAGTTA
gi|25 : g----GTTACTAT-------CAAT-TTA-ATGAGCATTACA-ACTTTTATAATTTTTAA-----TAAACTCAAGATTTCATTG-T-A--T--ATA-----TGAACTGAttgttaagt
gi|26 : tacatacatattTCATGATTTCA-TG-T-T--T---TA-----TGAACTAAGTGAAT-AACGATAATTGAAT-TG
gi|27 : aatcagcgacattcagaatgtcgtgtaagcagT-GCT----GT---ATGC----GTTACTAA-------CCATTTTATATGAGCCTTTAT-GCGTT-ACATTTGTGCA-----TGACCTCACAATGTC
gi|28 : ACGTCATGATTACAATA-T-T--T--ATA-----TGAGATGGGTGAATAAATGAT-ATTGTAA-TGTA---TTGt
gi|29 : CCTCATGATTTCA-TG-C-A--TT-ATG-----TAAATTGAGTGAATGAAGGGT-ATCGAAT-CGAA---CTG
gi|3 : -AAATAACTATGCGACTAAAATTCCTATTGATTATTGTTGTCATCACGAATATCACAAT--ATTTTCGAATTGTACT-ATTTCAACACTTAC--TG---TAA-T-----TATTTGTTATC----------CATTG-TTGGACTGTAGGTGTTTATA--T---TT--GAATAATA--AG-ATAATAAAT-TGAAG--TAA-TT-TGCGTATTT-TGTCAAAT-GTTATTGG-----CCAAAT-ATATT-GAATATAAACATG---TATATCGTGGAACTCTCCCACAAAAAATGACAAATGT--TGTTC-----CTTTTCCT--AGGTTATGAATTTGAA--ATATCTTTGAAAT---GTAT-GCT----GT---ATAC----GTTACTTA-------CAATCGTATATGAACCCTAAC-ACT-------------------TGATTTCAT------A-TA-T-A--T--ATG-----TGAACTGAATGAATAA
gi|30 : taataagtttataaataataatacgatgtatatataacttcatactagtaagacagttacgttgctacctaataggccaataatAT-GTATT-GAATATGATTTTA---TATTTCGTGGAGCTCTCCAACt
gi|4 : gaatattaaatatACTTCCGGTTGAATTATA-AAATAACTATGCGACTAAAATTTCTATTCATCATTGTTGTCATCAT----ATC----T--ATTTTCGAATGGTACC-ATTT-CAAACCTACAATAA--TAA-C-----A---TGTTATC----------GATTT-TTGGACAGTAGACGTT-A-A--TATTTT--AA-TCATA--AG-TAAATGATT-TGAAC--TAA-TT-TGCGTTTAA-GGTCAAAT-GTTACAGG-----CCAAAT-ATATT-GAATATAACCATG---TATATCGTGGAAC--------------TAACAAATGT--TGTTC-----CTTTTCCT--AGGTTATGAA---------------TGAAAT---GTAT-GCT----GT---ATAT----GTTACTTA-------CCATCTTATATGAGCCTTAAC-AC----------------------------TGATTGCA-TG-T-A--T--ATG-----TGAACTGAGTGAATAAAGGAT-ATTGTAT-TGTA---TTGTATTGT
gi|5 : gacaattgtatccatacttttacgtgtgggaattctgtaaacagtctcaTGACTTCCGGTTGATACGTA-AAAGAAA-ACCCTACTAAAATTGCTATTGATTATTGTTGTCATCAC----ATG----T--ATTTC-----------------AATACTTAT--TGTTATAA-T-----T---TGTTATC----------CATTG-TTGGATAGCAAATATA-A-A--T---GT--TA--AAT---AG-AAAATG----TCGAA--TAtatt
gi|5 : taaaatagtaaataccagtcgtgaaccatttgtcatcattcatgcgttgtatatttcatttataaacatacaaaatacacttataacaatactgttaactaacaatacaattaaaacacttcgtaaaacaagaattgtgcgacaacttcttccaaaatatacccctataactaatggcatgaattTATAAATGTTAAAT-AGAAAATG-----TCGAAT-ATATC-TAATATGGATTTG---TATTTCGTGGATATCACCCACTAAAAATGGCGACTGTGATGCTC-----TTTTTTCTC-AGGTTATAtatctaatatggatttgtatttcgtggatatcacccactaaaaatggcgactgtgatgctcttttttctcaggttatagg
gi|6 : taaaatagtaaataccagtcgtgaaccatttgtcatcattcatgcgttgtatatttcatttataaacatacaaaatacacttataacaatactgttaactaacaatacaattaaaacacttcgtaaaacaagaattgtgcgacaacttcttccaaaatatacccctataactaatggcatgaatttgacttccggttgatacgtaaaagaaaaccctactaaaattgctattgattattgttgtcatcacatgtatttcaatacttattgttataatttgttatccattgttggatagcaaaTGACTTCCGGTTGAATTGTA-AAATAATTATGCGACTAAGATTCCTGTTGATTATTGTTGTCATCAC----ATC----T--ATTTT------GTACT-ATTT-AACACTTAC---------A-T-----T----GTTATC----------CATTG-TTAGACATTTGATGTT-A-AAAT---TT--GA-TAATA--AG-AAAATGAAT-TGAAA--TAA-TT-TGCGTATAA-TGTCAAAT-GTTACAGG-----CCAAAC-ATAT--GAATGGAACTATG---CATATCGAGGAACTCTCCCACAAAAACTGACAAATGT--TGTTC-----CATTTCCT--AGGTTATGAATTTGAA--CTATCTCTGAAAT---ATAT-GCT----GT---ATAC----GTTACTAA-------CCATCTTATATGAACAATAAC-ACTTT-ACAACTTTGCA-----TGACCTCATGACTGCA-GG-T-A--T--ATA-----TGAAATGAGTGAATAAAGGAT-ATTGTTT-TGTA---TTGTATTGTAgg
gi|7 : TGACTTCCGGTTGATATGTA-AAAGAAA-ACCCTACTAAAATTGCTATTGATTATTGTTGTCATCAC----ATG----T--ATTTC-----------------AATACTTA------------------T---TGTTATA-----------ATT-------TATTATCCATT-A----T---TG--GA-TAGCA--A---ATATAAATGTTAAA--TAG------------A-----AAAT-GT------------CGAAT-ATATT-TAATATGGATTTG---TATTTCGTGGATATCATCCACTAAAAATGGCGACTGTGATGCTC-----TTTTTTCTC-AGGTTATAt
gi|8 : aatagtaaataccagtcgtgaaccatttgtcatcattcatgcattgtatatttcattaataaacatacaaaatacacttataacaatactgttaactaacaatacaattaaaacacttcgtaaaacaagaattgtgcgacaacttcttccaaaatatacccctataactaatggcatgaattGACTTCCGGTTGAGTTGTA-AAATAACTATGCGACTAAA-TTCCTATTGACTATTGTTGTCATCAC----ATC----T--ATTTTCAAACTGTACTTGTTC-AATAATTAT--TG---TAA-T-----TATTTGTTATC----------CACTG-TTGGACAGTAAATGTT----------TT--AA-TAATA--AG-AAAATCAAT-TGAAG--TAT-TT-TGCGTATAA-TATCAAAT-GTTTCGGG-----CCAAAT-ATACT-GAATATGACCATG---TATTTCGTTGAACTGACCAACAAAAATTTACCCATGTTATGTTC-----CTTTTCCC--AGATTATAAATTTAAA--ATATATTTGAAAT---ACAT-GCC----GT---ATAT----GTTACTAA-------CCATCTTATgg
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): ATAACCAGAGACATGTTTATATAATTAAGTCACTAAGCAAAGCAATATGTGATAATACTATAGTAAACATAACCAATAGTCACTAAGTGTCACGCAAACCAATATTTGATCAAAATATTGAACACTTAATAAAAGTGTCACTTTTCATATCTCGCGGGAGAAAAATCATGGCATGTCAGACGATTCTTCGACTTTAAAATAGCAAATATCAGCCGTGAACCATTTGTCATCATACATGCGTTGTATATTTCAGTTATATGCATACAAAGTGTGCTCTTAACAAAACTTTTAACTGATAACACTGTTAAAACACTTCGTAAAACAAGTATTGCGCGACAACTTTATAAAAAAATACACCAAATGGCATGAATTTGACTTCCGGTCGAT
Unaligned ( gi|21 ): AAATACCAGCCGTGGATCCGTTGTCAGCATACATGTTTGGTTTTAATCAATTAAACATGTATAATTGTATAATTTTGTCAATACAGACAGCTACCAATATTATCTATGACATCGTAAATGTTGGAATATATTGTGCGACATGTTTTCTAACATATA
Unaligned ( gi|31 ): GACATATCTACATCCAGGGGCGTAGCTAGCTATAAGTTATGTGCAGGAACA
Alignments
lowQualScore : 11111 6666666666666666666666 222222222222222222222 33333333333 11111 11111111111111 11 11111
lowQualScore : 11 4 1 55555 2 5 9999 99999 66 8888888888888888888888 8888 666666666666666666666 55 4 4 1 0 2 99999999999 555 44 55 3 77777 1 555 88888 0 7 11111111111111 2 2 2 444 4 2 8 66666 00 0 33 444 2 5555 333 6666 6666666 2 7777 0 55555 4 2 2 33333 55555 3 1 3 0 666
lowQualScore : .. . . ..... . . .... ..... .. ...................... .... ..................... .. . . . . . ........... ... .. .. . ..... . ... ..... . . .............. . . . ... . . . ..... .. . .. ... . .... ... .... ....... . .... . ..... . . . ..... ..... . . . . ...
lowQualScore : 22 4 0 99999 6 3 4444 66666 11 6666666666666666666666 5555 333333333333333333333 55 0 0 0 4 6 66666666666 444 00 00 6 66666 0 555 55555 7 3 11111111111111 7 7 6 777 8 0 8 22222 33 7 44 444 4 0000 999 6666 8888888 2 3333 1 66666 0 0 0 66666 33333 3 7 3 5 444
consensus : TGACTTCCGGTTGATATGTA-AAANAANTACGCNACTAAAATTNCTATTGATTATTGTTGTCATCAC----ATC----T--ATTTC------G-----TACT-ATTT-AAT----ACTTAC---TG---T----AATT---TGTTA--T-CCATTG-TTGGACAGTAGATGTT-A-A--T---TT--GA-TAATA--AG-AAAATNAAT-TNAAA--TAA-TT-TGCGTATAA-TGTCAAAT-GTTACAGG-----CCAAAT-ATATT-GAATATGACCATG---TATTTCGTGGAACTCTCCCACNAAAANTGACGAATGTGATGCTC-----CTTTTCCT--AGGTTATAAATTTGAA--ATATATTTGAAAT---ATAT-GCT----GT---ATAC----GTTACTAA-------CCATCTTATATGAGCCTTAAC-ACTTT-ACAATTTTGCA-----TGACCTCATGATTTCA-TG-T-A--T--ATG-----TGAACTGAGTGAATAAAGGAT-ATTGAAT-TGAA---TTGTATTGTA
Reference ( family-3523 ) : TGACTTCCGGTTGATATGTA-AAANAANTACGCNACTAAAATTNCTATTGATTATTGTTGTCATCAC----ATC----T--ATTTC------G-----TACT-ATTT-AAT----ACTTAC---TG---T----AATT---TGTTA--T-CCATTG-TTGGATAGTAGATGTT-A-A--T---TT--GA-TAATA--AG-AAAATNAAT-TNAAA--TAA-TT-TGCGTATAA-TGTCAAAT-GTTACAGG-----CCAAAT-ATATT-GAATATGACCATG---TATTTCGTGGAACTCTCCCACNAAAANTGACGAATGTGATGCTC-----CTTTTCCT--AGGTTATAAATTTGAA--ATATATTTGAAAT---ATAT-GCT----GT---ATAC----GTTACTAA-------CCATCTTATATGAGCCTTAAC-ACTTT-ACAATTTTGCA-----TGACCTCATGATTTCA-TG-T-A--T--ATG-----TGAACTGAGTGAATAAAGGAT-ATTGAAT-TGAA---TTGTATTGTA
gi|1 : TGACTTCCGGTTAATATGTG-AAAGAAAT------------TT--TATTGATTATTGTTGTCATCAC----ATC----GAAATTTC----------------------AAT----ACTTAG---TGTTAT----ACTT---TGTTA--T-TTCTTC-TTGGATATCAAATATA-A-A-------T--GA-CAAAT--AG-GAAAT---T-TCAAA--TAT-GT-TGAATAT
gi|1 : aagcactctgtataattcctttacataaccaatagtcacttagtgttatgcaaaccaatatgtgataataacattgaacatctgatattttaatcgccgttcaaaatcacacagaaataaaatgtcactaaagtcactttccgtatctcgcgggtgaaaaaatcatggcatgtcagacgattcttcgacatcaaaataataaataccagtcgtgaaccatttgtcatcatacatgcgttgtatatttcagttacatacatacaaaatactctcttaacaataatgttaactaataatgctgttaaaacacttcataatacgagtattgtgcgacaactttatccaaaatataccaaaagcaaatggcatgatttTATAAATGACAAAT------AGGAAATTTCAAAT-ATGTT-GAATATGGTTTTG---TGTTTTGTGGATATCTCCCACTAAAACTGACGAATGTGATGCTC-----TTTCTATT--ATGTTA-AAAggttttgtgttttgtggatatctcccactaaaactgacgaatgtgatgctctttctattatgttaaaagccc
gi|10 : aagcactctgtataattcctttacataaccaatagtcacttagtgttatgcaaaccaatatgtgataataacattgaacatctgatattttaatcgccgttcaaaatcacacagaaataaaatgtcactaaagtcactttccgtatctcgcgggtgaaaaaatcatggcatgtcagacgattcttcgacatcaaaataataaataccagtcgtgaaccatttgtcatcatacatgcgttgtatatttcagttacatacatacaaaatactctcttaacaataatgttaactaataatgctgttaaaacacttcataatacgagtattgtgcgacaactttatccaaaatataccaaaagcaaatggcatgattttgacttccggttaatatgtgaaagaaattttattgattattgttgtcatcacatcgaaatttcaatacttagtgttatactttgttatttcttcttggatatcaaaTTTGAAGCAAATATTAAAGAT---ACATTGCTTACAATGAAATACT---GTTACTAA-------CCATCTTATATAAGCCCTAACAAATAT-GCAATTATATA-----TGACCTCATGA-TTGA-TG-T-A-----ATGTTTTATGATCTGAGTGAATAAAGGTT-ATTGTAC-TGTATTGTTGTATTGTAgccc
gi|11 : atatcatataaatctcagtataaatagtatgtgaatttttcaaactgatagtcagtaagtttaaattatttttctcccaacaatttGAAAGTGGA-GTT----------TT--GA-CAATATAAGTAACATTC-T-TTAAACGTAA-TT-TGCGTATAA-TGTCAATT-GTTACAGG-----CAACAT-ATATT-GAATATAACCATG---TATTTCGTGGAACTTTCCCAC-AAAACTGACAAATG--AAGTTC-----CTTTTCCA--AGGTTATAAATTTAAA--ATATCTTTGAAAT---ATAT-GCT----GT---ATAC----GTTACTAAGTTTTAACGTTTTTATATGAGCCTGAAC-ACTTT-ATAATTTTGCA-----TGACCTCATGATTTTA-TG-T-A--T--ATG-----TGAACTGAGTGAATAAAGGaactatgtaatacacagagataatatattactaaacatgtacttacgatcacacgtctacat
gi|12 : gatttat-----CCAAATTATATT-GAATTTGATTATG---TAATTCGTGGAACTCTCCCACTAAAATTGACGAGTCTGATGCGC-----GTTTTCTC--AGGTTATAGATTTAAA--ACATATCCGAAAT---GTAT-TCT----AT---ATAC----GATATTTT-------ACGTCTTTTATGAGCCTCAAC-AC-TA-ACAATTGTGCA-----TGCCCTCATCTTTCCG-TG-T-ATTT--ATG-----TGAACTAAGTGAATTGAAAAT-AAGTAAC-TGAA---TTG
gi|13 : atatataatgtaacaatagacccctttCGGTCGATACGTATAAAGAAAAACCCTACTAAAATTGTTATTGACTATTGTTGTCATCAC----ACG----T--ATTTCGA----G-----TTGT-GTTC-AAT----ACTTACTATTA---T----AATT---TGTAA--T-CTATTG-TTGGATAGCAGATAT-----------------------------AAATG----TCAAA--T--------TGTA-AA-TTTCAAAT---------------------ATATT-GAATATGGTTTTG---TATTTCGTGGAACTCTCCCACTAAAATTGTTGAATGTGATGCTCTTAGACTTTTTCTC-AGATTATAa
gi|14 : AT-ATATTTAAATAT-ACCATTAACTACTTCTCGGAACTCTCCCGCCAACATGGATGACTTTGACGCTC-----CCTTTCTC--TTGTTATCAATTTAAA--ATGTATTTAAAAT---ATAT-ATT----GT---ATAG----GTTACTAA-------CCATCTCACATGAGCCTTAAC-AC--------TTTTGCA-----TGACCTCATGATTTCA-TG-T-AT-T--GTG-----TGAACTGAGTGAATAAAGGTT-ATTGCAT-TGAA---TTGggccc
gi|15 : taatAACT-ATATT-GAATATAAGCATG---TATATCGTGGTACTCTCCCAAGAAAACTGACAAATGT--TGTTC-----CTTTTCCT--AGGTTATGAATCTGAA--ATATCTTTAAGAT---ATAT-GCT----GT---TTAC----GTTACTAA-------CCATCTTATATGAGCCTTAAC-ACTTT-ACAACTTTGCA-----TGACCTCGTGATTTCA-TG-T-A--T--ATG-----TGGACTGAGTGactttttttcaggttt
gi|16 : gaatataatacatgtattaTGACGAATGCTATGCTG-----TTTTTTTTTCAGAT-ATAGATTTAAG--ATATATTTTAAAT---GTAT------------------------ACCAA-------CCA-------------------ACTT--ACAGTTTTGCA-----TGTCCTCATAGTTTCA-TA-T-A--TTTATG-----TGAACTGAGTAAATAAAGGAA-AATGAAT-TGAA---TTG
gi|17 : agcaagaaaatcgactgcactaaatattatgtctgatgtaaattataaaatttcaaattgaatatata---ATGC----TTTATTCA-------CCATCTTAAATTAGCCATAAC-ACTTT-AAAATGTCGTAAACTATGCCCTCTTGATTTCA-TG-T-A--TTTATG-----TGAACTGAGTGAATAAAGGAT-ATTGAATATGAC---TGGTTTTAT
gi|18 : tacattatctgtcactggaagagtacTTACAGG-----CCAAAT-ATATC-GAATATGACCATG---TATTTCGTGAAAATCTCCTATAAAAAATGACGAATGTGATGTTC-----CTTTTCTT--AGGTTATAGATTTAAC--ATATATTTGAAAC---ATAT-ACT----GT---ATGC----GTTACTAA-------CCATCTTATATGAGTCTTA-----T------ATTTTGTA-----TGATATTTTG---TCA-TA-T-ATTT--ATG-----TGAACTGAGTAAATTAAGAAcggaaacacaagaaaccatatgaaaacacaaacatgtaccttttacgaacgtttctacg
gi|19 : aGATGAATGTCGCGCGC-----ATTTGTTT---GATAATAAAATTTAA--ATGAATTTGGTAT---GTAC-ATT----GT---ATAT----GTTACTAA-------CGATCTTATAT--------AT-ATTTT-TGAATTTTGTA-----TGTCTACATGATTTCA-TA-TAA--T--GTG-----TGAACCGAGTGAATAAACGAT-TTTAAAA-TGAA---
gi|2 : attcTGACTTC-GGTTGATATGTA-AAAAAATC---CTACTAAAACTAATATTGATTATTCATGTCACCTC----ATT----T--ATTTT------GAGTTGTAGT-ATTT-AATTAATATGTAT---TG---T----TATT---TTTTAAATATCATTG-TTGGATAGTACA-GTA-A-A--TA--TTCCAA-TAACA--AT-AAAATCGAC-TAAAT--TAAATG-TGAGTATGA-TGTCAAAT-AGAAAATG-----TCAAAT-TAAAT-GAATATGAGTATA---TAATTTGTGGAACTCTCCCACTGAAGTTGACGATTGTGATGCTA-----GTTTTCTC--AGGCTAAAGATTTTGA--ATATATTTCAAAA---GTGT-TAT----AC---ATAC----ACTACTTA-------CCATCTTACAAGAGCCTTAAC-AC-TT-ACAATTTTGCA-----TTCCCTCATGATTGCA-TGTT-AT-T--ATA-----TGAACCGAG-AAATAAAGGAT-ATTGACT-TGAA---TTGaagaaattcaatgaaatacaacaaa
gi|20 : taatgacactcttaacaatactgataactaatattactgttaaacgctccataaaatcaatcactgtgtgacaaatttataaaaaaatatgccaagtgagaattatataagcacatgcaagaccgTTTGAA---TGTATTTGAAAT---ACAT-GCT----GT---ACAC----GCTACTAA-------CCATCTACTATGTCCCTTAAC-ACTTC-ACAAGTTTGCA-----CGAGCCCGTGATTTCA-TG-T-AT-T--ATG-----TG-ATTATGTGAACAa
gi|22 : tattTTTG-----TATATC--AAATGTAATAT-GTT----GT---ATACCTACATTACTAA-------TC-TCCCATACGACCCTTAAG-ACTTT-GCAATTTTGCA-----TGACCTCATGATTTCG-TG-T-cacaggcggcagtatcggtgtttggattaccccctttaccgattaaaaaaaaaa
gi|23 : caaatgcattttttaagccatatcctctgCCT--AGGTTATGAATCTGAA--ATATCTTTAAGAT---ATAT-GCT----GT---TTAC----GTTACTAA-------CCATCTTATATGAGCCTTAAC-ACTTT-ACTACTTTGAA-----TGACCTCGTGTTTTCA-TG-T-A--T--ATG-----TGGACTGAGTGAATAAtcaatgaaa
gi|24 : ------G-----TATT-ATTTCAAT----ACTTAT---TA---TTATAAATT---TGTTG--T-CGATTAATTAGATAGCAAGTGTA-A-A--TATTTC--AA-TATCA--AG-AAAATCGAC-TGAAC--TAA-CTGTATGTAGGA-TGTCGAATAGTTA
gi|25 : g----GTTACTAT-------CAAT-TTA-ATGAGCATTACA-ACTTTTATAATTTTTAA-----TAAACTCAAGATTTCATTG-T-A--T--ATA-----TGAACTGAttgttaagt
gi|26 : tacatacatattTCATGATTTCA-TG-T-T--T---TA-----TGAACTAAGTGAAT-AACGATAATTGAAT-TG
gi|27 : aatcagcgacattcagaatgtcgtgtaagcagT-GCT----GT---ATGC----GTTACTAA-------CCATTTTATATGAGCCTTTAT-GCGTT-ACATTTGTGCA-----TGACCTCACAATGTC
gi|28 : ACGTCATGATTACAATA-T-T--T--ATA-----TGAGATGGGTGAATAAATGAT-ATTGTAA-TGTA---TTGt
gi|29 : CCTCATGATTTCA-TG-C-A--TT-ATG-----TAAATTGAGTGAATGAAGGGT-ATCGAAT-CGAA---CTG
gi|3 : -AAATAACTATGCGACTAAAATTCCTATTGATTATTGTTGTCATCACGAATATCACAAT--ATTTTCGAATTG-----TACT-ATTTCAAC----ACTTAC---TG---T----AATTATTTGTTA--T-CCATTG-TTGGACTGTAGGTGTTTATA--T---TT--GAATAATA--AG-ATAATAAAT-TGAAG--TAA-TT-TGCGTATTT-TGTCAAAT-GTTATTGG-----CCAAAT-ATATT-GAATATAAACATG---TATATCGTGGAACTCTCCCACAAAAAATGACAAATGT--TGTTC-----CTTTTCCT--AGGTTATGAATTTGAA--ATATCTTTGAAAT---GTAT-GCT----GT---ATAC----GTTACTTA-------CAATCGTATATGAACCCTAAC-ACT-------------------TGATTTCAT------A-TA-T-A--T--ATG-----TGAACTGAATGAATAA
gi|30 : taataagtttataaataataatacgatgtatatataacttcatactagtaagacagttacgttgctacctaataggccaataatAT-GTATT-GAATATGATTTTA---TATTTCGTGGAGCTCTCCAACt
gi|4 : gaatattaaatatACTTCCGGTTGAATTATA-AAATAACTATGCGACTAAAATTTCTATTCATCATTGTTGTCATCAT----ATC----T--ATTTTCGAATGG-----TACC-ATTT-CAA----ACCTAC---AA---T----AATAACATGTTA--T-CGATTT-TTGGACAGTAGACGTT-A-A--TATTTT--AA-TCATA--AG-TAAATGATT-TGAAC--TAA-TT-TGCGTTTAA-GGTCAAAT-GTTACAGG-----CCAAAT-ATATT-GAATATAACCATG---TATATCGTGGAAC--------------TAACAAATGT--TGTTC-----CTTTTCCT--AGGTTATGAA---------------TGAAAT---GTAT-GCT----GT---ATAT----GTTACTTA-------CCATCTTATATGAGCCTTAAC-AC----------------------------TGATTGCA-TG-T-A--T--ATG-----TGAACTGAGTGAATAAAGGAT-ATTGTAT-TGTA---TTGTATTGT
gi|5 : gacaattgtatccatacttttacgtgtgggaattctgtaaacagtctcaTGACTTCCGGTTGATACGTA-AAAGAAA-ACCCTACTAAAATTGCTATTGATTATTGTTGTCATCAC----ATG----T--ATTTC----------------------AAT----ACTTAT---TGTTAT----AATT---TGTTA--T-CCATTG-TTGGATAGCAAATATA-A-A--T---GT--TA--AAT---AG-AAAATG----TCGAA--TAtatt
gi|5 : taaaatagtaaataccagtcgtgaaccatttgtcatcattcatgcgttgtatatttcatttataaacatacaaaatacacttataacaatactgttaactaacaatacaattaaaacacttcgtaaaacaagaattgtgcgacaacttcttccaaaatatacccctataactaatggcatgaattTATAAATGTTAAAT-AGAAAATG-----TCGAAT-ATATC-TAATATGGATTTG---TATTTCGTGGATATCACCCACTAAAAATGGCGACTGTGATGCTC-----TTTTTTCTC-AGGTTATAtatctaatatggatttgtatttcgtggatatcacccactaaaaatggcgactgtgatgctcttttttctcaggttatagg
gi|6 : taaaatagtaaataccagtcgtgaaccatttgtcatcattcatgcgttgtatatttcatttataaacatacaaaatacacttataacaatactgttaactaacaatacaattaaaacacttcgtaaaacaagaattgtgcgacaacttcttccaaaatatacccctataactaatggcatgaatttgacttccggttgatacgtaaaagaaaaccctactaaaattgctattgattattgttgtcatcacatgtatttcaatacttattgttataatttgttatccattgttggatagcaaaTGACTTCCGGTTGAATTGTA-AAATAATTATGCGACTAAGATTCCTGTTGATTATTGTTGTCATCAC----ATC----T--ATTTT------G-----TACT-ATTT-AAC----ACTTAC--------------ATT----GTTA--T-CCATTG-TTAGACATTTGATGTT-A-AAAT---TT--GA-TAATA--AG-AAAATGAAT-TGAAA--TAA-TT-TGCGTATAA-TGTCAAAT-GTTACAGG-----CCAAAC-ATAT--GAATGGAACTATG---CATATCGAGGAACTCTCCCACAAAAACTGACAAATGT--TGTTC-----CATTTCCT--AGGTTATGAATTTGAA--CTATCTCTGAAAT---ATAT-GCT----GT---ATAC----GTTACTAA-------CCATCTTATATGAACAATAAC-ACTTT-ACAACTTTGCA-----TGACCTCATGACTGCA-GG-T-A--T--ATA-----TGAAATGAGTGAATAAAGGAT-ATTGTTT-TGTA---TTGTATTGTAgg
gi|7 : TGACTTCCGGTTGATATGTA-AAAGAAA-ACCCTACTAAAATTGCTATTGATTATTGTTGTCATCAC----ATG----T--ATTTC----------------------AAT----ACTTAT---TG-----------T---TATAA--T-TTATTA-TC----------CATT-A----T---TG--GA-TAGCA--A---ATATAAATGTTAAA--TAG------------A-----AAAT-GT------------CGAAT-ATATT-TAATATGGATTTG---TATTTCGTGGATATCATCCACTAAAAATGGCGACTGTGATGCTC-----TTTTTTCTC-AGGTTATAt
gi|8 : aatagtaaataccagtcgtgaaccatttgtcatcattcatgcattgtatatttcattaataaacatacaaaatacacttataacaatactgttaactaacaatacaattaaaacacttcgtaaaacaagaattgtgcgacaacttcttccaaaatatacccctataactaatggcatgaattGACTTCCGGTTGAGTTGTA-AAATAACTATGCGACTAAA-TTCCTATTGACTATTGTTGTCATCAC----ATC----T--ATTTTCAAACTG-----TACTTGTTC-AAT----AATTAT---TG---T----AATTATTTGTTA--T-CCACTG-TTGGACAGTAAATGTT----------TT--AA-TAATA--AG-AAAATCAAT-TGAAG--TAT-TT-TGCGTATAA-TATCAAAT-GTTTCGGG-----CCAAAT-ATACT-GAATATGACCATG---TATTTCGTTGAACTGACCAACAAAAATTTACCCATGTTATGTTC-----CTTTTCCC--AGATTATAAATTTAAA--ATATATTTGAAAT---ACAT-GCC----GT---ATAT----GTTACTAA-------CCATCTTATgg
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): ATAACCAGAGACATGTTTATATAATTAAGTCACTAAGCAAAGCAATATGTGATAATACTATAGTAAACATAACCAATAGTCACTAAGTGTCACGCAAACCAATATTTGATCAAAATATTGAACACTTAATAAAAGTGTCACTTTTCATATCTCGCGGGAGAAAAATCATGGCATGTCAGACGATTCTTCGACTTTAAAATAGCAAATATCAGCCGTGAACCATTTGTCATCATACATGCGTTGTATATTTCAGTTATATGCATACAAAGTGTGCTCTTAACAAAACTTTTAACTGATAACACTGTTAAAACACTTCGTAAAACAAGTATTGCGCGACAACTTTATAAAAAAATACACCAAATGGCATGAATTTGACTTCCGGTCGAT
Unaligned ( gi|21 ): AAATACCAGCCGTGGATCCGTTGTCAGCATACATGTTTGGTTTTAATCAATTAAACATGTATAATTGTATAATTTTGTCAATACAGACAGCTACCAATATTATCTATGACATCGTAAATGTTGGAATATATTGTGCGACATGTTTTCTAACATATA
Unaligned ( gi|31 ): GACATATCTACATCCAGGGGCGTAGCTAGCTATAAGTTATGTGCAGGAACA
Alignments
lowQualScore : 11111 6666666666666666666666 333333333333333333333 444444444444444 11111 11111 11111111111111 11 11111
lowQualScore : 11 4 1 55555 2 5 9999 99999 66 8888888888888888888888 8888 777777777777777777777 55 4 2 4 555555 666666666666666 3 1 55 888 22222 1 555 33333 2 11 55 66666666666666 2 2 2 444 4 2 8 66666 00 0 33 444 2 5555 333 6666 6666666 2 7777 0 55555 4 2 2 33333 55555 3 1 3 0 666
lowQualScore : .. . . ..... . . .... ..... .. ...................... .... ..................... .. . . . ...... ............... . . .. ... ..... . ... ..... . .. .. .............. . . . ... . . . ..... .. . .. ... . .... ... .... ....... . .... . ..... . . . ..... ..... . . . . ...
lowQualScore : 22 4 0 99999 6 3 4444 66666 11 6666666666666666666666 5555 222222222222222222222 55 0 3 0 000000 777777777777777 6 0 00 555 55555 0 555 33333 0 55 77 00000000000000 7 7 6 777 8 0 8 22222 33 7 44 444 4 0000 999 6666 8888888 2 3333 1 66666 0 0 0 66666 33333 3 7 3 5 444
consensus : TGACTTCCGGTTGATATGTA-AAANAANTACGCNACTAAAATTNCTATTGATTATTGTTGTCATCAC----ATC----T--ATTTC------G-----TACT-ATTT-AAT----ACTTAC---TG---T----AATT---TGTTA--T-CCATTG-TTGGACAGTAGATGTT-A-A--T---TT--GA-TAACA--AG-AAAATNAAT-TNAAA--TAA-TT-TGCGTATAA-TGTCAAAT-GTTACAGG-----CCAAAT-ATATT-GAATATGACCATG---TATTTCGTGGAACTCTCCCACNAAAANTGACGAATGTGATGCTC-----CTTTTCCT--AGGTTATAAATTTGAA--ATATATTTGAAAT---ATAT-GCT----GT---ATAC----GTTACTAA-------CCATCTTATATGAGCCTTAAC-ACTTT-ACAATTTTGCA-----TGACCTCATGATTTCA-TG-T-A--T--ATG-----TGAACTGAGTGAATAAAGGAT-ATTGAAT-TGAA---TTGTATTGTA
Reference ( family-3523 ) : TGACTTCCGGTTGATATGTA-AAANAANTACGCNACTAAAATTNCTATTGATTATTGTTGTCATCAC----ATC----T--ATTTC------G-----TACT-ATTT-AAT----ACTTAC---TG---T----AATT---TGTTA--T-CCATTG-TTGGACAGTAGATGTT-A-A--T---TT--GA-TAATA--AG-AAAATNAAT-TNAAA--TAA-TT-TGCGTATAA-TGTCAAAT-GTTACAGG-----CCAAAT-ATATT-GAATATGACCATG---TATTTCGTGGAACTCTCCCACNAAAANTGACGAATGTGATGCTC-----CTTTTCCT--AGGTTATAAATTTGAA--ATATATTTGAAAT---ATAT-GCT----GT---ATAC----GTTACTAA-------CCATCTTATATGAGCCTTAAC-ACTTT-ACAATTTTGCA-----TGACCTCATGATTTCA-TG-T-A--T--ATG-----TGAACTGAGTGAATAAAGGAT-ATTGAAT-TGAA---TTGTATTGTA
gi|1 : TGACTTCCGGTTAATATGTG-AAAGAAAT------------TT--TATTGATTATTGTTGTCATCAC----ATC----GAAATTTC----------------------AAT----ACTTAG---TGTTAT----ACTT---TGTTA--T-TTCTTC-TTGGATATCAAATATA-A-A-------T--GA-CAAAT--AG-GAAAT---T-TCAAA--TAT-GT-TGAATAT
gi|1 : aagcactctgtataattcctttacataaccaatagtcacttagtgttatgcaaaccaatatgtgataataacattgaacatctgatattttaatcgccgttcaaaatcacacagaaataaaatgtcactaaagtcactttccgtatctcgcgggtgaaaaaatcatggcatgtcagacgattcttcgacatcaaaataataaataccagtcgtgaaccatttgtcatcatacatgcgttgtatatttcagttacatacatacaaaatactctcttaacaataatgttaactaataatgctgttaaaacacttcataatacgagtattgtgcgacaactttatccaaaatataccaaaagcaaatggcatgatttTATAAATGACAAAT------AGGAAATTTCAAAT-ATGTT-GAATATGGTTTTG---TGTTTTGTGGATATCTCCCACTAAAACTGACGAATGTGATGCTC-----TTTCTATT--ATGTTA-AAAggttttgtgttttgtggatatctcccactaaaactgacgaatgtgatgctctttctattatgttaaaagccc
gi|10 : aagcactctgtataattcctttacataaccaatagtcacttagtgttatgcaaaccaatatgtgataataacattgaacatctgatattttaatcgccgttcaaaatcacacagaaataaaatgtcactaaagtcactttccgtatctcgcgggtgaaaaaatcatggcatgtcagacgattcttcgacatcaaaataataaataccagtcgtgaaccatttgtcatcatacatgcgttgtatatttcagttacatacatacaaaatactctcttaacaataatgttaactaataatgctgttaaaacacttcataatacgagtattgtgcgacaactttatccaaaatataccaaaagcaaatggcatgattttgacttccggttaatatgtgaaagaaattttattgattattgttgtcatcacatcgaaatttcaatacttagtgttatactttgttatttcttcttggatatcaaaTTTGAAGCAAATATTAAAGAT---ACATTGCTTACAATGAAATACT---GTTACTAA-------CCATCTTATATAAGCCCTAACAAATAT-GCAATTATATA-----TGACCTCATGA-TTGA-TG-T-A-----ATGTTTTATGATCTGAGTGAATAAAGGTT-ATTGTAC-TGTATTGTTGTATTGTAgccc
gi|11 : atatcatataaatctcagtataaatagtatgtgaatttttcaaactgatagtcagtaagtttaaattatttttctcccaacaatttGAAAGTGGA-GTT----------TT--GA-CAATATAAGTAACATTC-T-TTAAACGTAA-TT-TGCGTATAA-TGTCAATT-GTTACAGG-----CAACAT-ATATT-GAATATAACCATG---TATTTCGTGGAACTTTCCCAC-AAAACTGACAAATG--AAGTTC-----CTTTTCCA--AGGTTATAAATTTAAA--ATATCTTTGAAAT---ATAT-GCT----GT---ATAC----GTTACTAAGTTTTAACGTTTTTATATGAGCCTGAAC-ACTTT-ATAATTTTGCA-----TGACCTCATGATTTTA-TG-T-A--T--ATG-----TGAACTGAGTGAATAAAGGaactatgtaatacacagagataatatattactaaacatgtacttacgatcacacgtctacat
gi|12 : gatttat-----CCAAATTATATT-GAATTTGATTATG---TAATTCGTGGAACTCTCCCACTAAAATTGACGAGTCTGATGCGC-----GTTTTCTC--AGGTTATAGATTTAAA--ACATATCCGAAAT---GTAT-TCT----AT---ATAC----GATATTTT-------ACGTCTTTTATGAGCCTCAAC-AC-TA-ACAATTGTGCA-----TGCCCTCATCTTTCCG-TG-T-ATTT--ATG-----TGAACTAAGTGAATTGAAAAT-AAGTAAC-TGAA---TTG
gi|13 : atatataatgtaacaatagacccctttCGGTCGATACGTATAAAGAAAAACCCTACTAAAATTGTTATTGACTATTGTTGTCATCAC----ACG----T--ATTTCGA----G-----TTGT-GTTC-AAT----ACTTACTATTA---T----AATT---TGTAA--T-CTATTG-TTGGATAGCAGATAT-----------------------------AAATG----TCAAA--T--------TGTA-AA-TTTCAAAT---------------------ATATT-GAATATGGTTTTG---TATTTCGTGGAACTCTCCCACTAAAATTGTTGAATGTGATGCTCTTAGACTTTTTCTC-AGATTATAa
gi|14 : AT-ATATTTAAATAT-ACCATTAACTACTTCTCGGAACTCTCCCGCCAACATGGATGACTTTGACGCTC-----CCTTTCTC--TTGTTATCAATTTAAA--ATGTATTTAAAAT---ATAT-ATT----GT---ATAG----GTTACTAA-------CCATCTCACATGAGCCTTAAC-AC--------TTTTGCA-----TGACCTCATGATTTCA-TG-T-AT-T--GTG-----TGAACTGAGTGAATAAAGGTT-ATTGCAT-TGAA---TTGggccc
gi|15 : taatAACT-ATATT-GAATATAAGCATG---TATATCGTGGTACTCTCCCAAGAAAACTGACAAATGT--TGTTC-----CTTTTCCT--AGGTTATGAATCTGAA--ATATCTTTAAGAT---ATAT-GCT----GT---TTAC----GTTACTAA-------CCATCTTATATGAGCCTTAAC-ACTTT-ACAACTTTGCA-----TGACCTCGTGATTTCA-TG-T-A--T--ATG-----TGGACTGAGTGactttttttcaggttt
gi|16 : gaatataatacatgtattaTGACGAATGCTATGCTG-----TTTTTTTTTCAGAT-ATAGATTTAAG--ATATATTTTAAAT---GTAT------------------------ACCAA-------CCA-------------------ACTT--ACAGTTTTGCA-----TGTCCTCATAGTTTCA-TA-T-A--TTTATG-----TGAACTGAGTAAATAAAGGAA-AATGAAT-TGAA---TTG
gi|17 : agcaagaaaatcgactgcactaaatattatgtctgatgtaaattataaaatttcaaattgaatatata---ATGC----TTTATTCA-------CCATCTTAAATTAGCCATAAC-ACTTT-AAAATGTCGTAAACTATGCCCTCTTGATTTCA-TG-T-A--TTTATG-----TGAACTGAGTGAATAAAGGAT-ATTGAATATGAC---TGGTTTTAT
gi|18 : tacattatctgtcactggaagagtacTTACAGG-----CCAAAT-ATATC-GAATATGACCATG---TATTTCGTGAAAATCTCCTATAAAAAATGACGAATGTGATGTTC-----CTTTTCTT--AGGTTATAGATTTAAC--ATATATTTGAAAC---ATAT-ACT----GT---ATGC----GTTACTAA-------CCATCTTATATGAGTCTTA-----T------ATTTTGTA-----TGATATTTTG---TCA-TA-T-ATTT--ATG-----TGAACTGAGTAAATTAAGAAcggaaacacaagaaaccatatgaaaacacaaacatgtaccttttacgaacgtttctacg
gi|19 : aGATGAATGTCGCGCGC-----ATTTGTTT---GATAATAAAATTTAA--ATGAATTTGGTAT---GTAC-ATT----GT---ATAT----GTTACTAA-------CGATCTTATAT--------AT-ATTTT-TGAATTTTGTA-----TGTCTACATGATTTCA-TA-TAA--T--GTG-----TGAACCGAGTGAATAAACGAT-TTTAAAA-TGAA---
gi|2 : attcTGACTTC-GGTTGATATGTA-AAAAAATC---CTACTAAAACTAATATTGATTATTCATGTCACCTC----ATT----T--ATTTT------GAGTTGTAGT-ATTT-AATTAATATGTAT---TG---T----TATT---TTTTAAATATCATTG-TTGGATAGTACA-GTA-A-A--TA--TTCCAA-TAACA--AT-AAAATCGAC-TAAAT--TAAATG-TGAGTATGA-TGTCAAAT-AGAAAATG-----TCAAAT-TAAAT-GAATATGAGTATA---TAATTTGTGGAACTCTCCCACTGAAGTTGACGATTGTGATGCTA-----GTTTTCTC--AGGCTAAAGATTTTGA--ATATATTTCAAAA---GTGT-TAT----AC---ATAC----ACTACTTA-------CCATCTTACAAGAGCCTTAAC-AC-TT-ACAATTTTGCA-----TTCCCTCATGATTGCA-TGTT-AT-T--ATA-----TGAACCGAG-AAATAAAGGAT-ATTGACT-TGAA---TTGaagaaattcaatgaaatacaacaaa
gi|20 : taatgacactcttaacaatactgataactaatattactgttaaacgctccataaaatcaatcactgtgtgacaaatttataaaaaaatatgccaagtgagaattatataagcacatgcaagaccgTTTGAA---TGTATTTGAAAT---ACAT-GCT----GT---ACAC----GCTACTAA-------CCATCTACTATGTCCCTTAAC-ACTTC-ACAAGTTTGCA-----CGAGCCCGTGATTTCA-TG-T-AT-T--ATG-----TG-ATTATGTGAACAa
gi|22 : tattTTTG-----TATATC--AAATGTAATAT-GTT----GT---ATACCTACATTACTAA-------TC-TCCCATACGACCCTTAAG-ACTTT-GCAATTTTGCA-----TGACCTCATGATTTCG-TG-T-cacaggcggcagtatcggtgtttggattaccccctttaccgattaaaaaaaaaa
gi|23 : caaatgcattttttaagccatatcctctgCCT--AGGTTATGAATCTGAA--ATATCTTTAAGAT---ATAT-GCT----GT---TTAC----GTTACTAA-------CCATCTTATATGAGCCTTAAC-ACTTT-ACTACTTTGAA-----TGACCTCGTGTTTTCA-TG-T-A--T--ATG-----TGGACTGAGTGAATAAtcaatgaaa
gi|24 : ------G-----TATT-ATTTCAAT----ACTTAT---TA---TTATAAATT---TGTTG--T-CGATTAATTAGATAGCAAGTGTA-A-A--TATTTC--AA-TATCA--AG-AAAATCGAC-TGAAC--TAA-CTGTATGTAGGA-TGTCGAATAGTTA
gi|25 : g----GTTACTAT-------CAAT-TTA-ATGAGCATTACA-ACTTTTATAATTTTTAA-----TAAACTCAAGATTTCATTG-T-A--T--ATA-----TGAACTGAttgttaagt
gi|26 : tacatacatattTCATGATTTCA-TG-T-T--T---TA-----TGAACTAAGTGAAT-AACGATAATTGAAT-TG
gi|27 : aatcagcgacattcagaatgtcgtgtaagcagT-GCT----GT---ATGC----GTTACTAA-------CCATTTTATATGAGCCTTTAT-GCGTT-ACATTTGTGCA-----TGACCTCACAATGTC
gi|28 : ACGTCATGATTACAATA-T-T--T--ATA-----TGAGATGGGTGAATAAATGAT-ATTGTAA-TGTA---TTGt
gi|29 : CCTCATGATTTCA-TG-C-A--TT-ATG-----TAAATTGAGTGAATGAAGGGT-ATCGAAT-CGAA---CTG
gi|3 : -AAATAACTATGCGACTAAAATTCCTATTGATTATTGTTGTCATCACGAATATCACAAT--ATTTTCGAATTG-----TACT-ATTTCAAC----ACTTAC---TG---T----AATTATTTGTTA--T-CCATTG-TTGGACTGTAGGTGTTTATA--T---TT--GAATAATA--AG-ATAATAAAT-TGAAG--TAA-TT-TGCGTATTT-TGTCAAAT-GTTATTGG-----CCAAAT-ATATT-GAATATAAACATG---TATATCGTGGAACTCTCCCACAAAAAATGACAAATGT--TGTTC-----CTTTTCCT--AGGTTATGAATTTGAA--ATATCTTTGAAAT---GTAT-GCT----GT---ATAC----GTTACTTA-------CAATCGTATATGAACCCTAAC-ACT-------------------TGATTTCAT------A-TA-T-A--T--ATG-----TGAACTGAATGAATAA
gi|30 : taataagtttataaataataatacgatgtatatataacttcatactagtaagacagttacgttgctacctaataggccaataatAT-GTATT-GAATATGATTTTA---TATTTCGTGGAGCTCTCCAACt
gi|4 : gaatattaaatatACTTCCGGTTGAATTATA-AAATAACTATGCGACTAAAATTTCTATTCATCATTGTTGTCATCAT----ATC----T--ATTTTCGAATGG-----TACC-ATTT-CAA----ACCTAC---AA---T----AATAACATGTTA--T-CGATTT-TTGGACAGTAGACGTT-A-A--TATTTT--AA-TCATA--AG-TAAATGATT-TGAAC--TAA-TT-TGCGTTTAA-GGTCAAAT-GTTACAGG-----CCAAAT-ATATT-GAATATAACCATG---TATATCGTGGAAC--------------TAACAAATGT--TGTTC-----CTTTTCCT--AGGTTATGAA---------------TGAAAT---GTAT-GCT----GT---ATAT----GTTACTTA-------CCATCTTATATGAGCCTTAAC-AC----------------------------TGATTGCA-TG-T-A--T--ATG-----TGAACTGAGTGAATAAAGGAT-ATTGTAT-TGTA---TTGTATTGT
gi|5 : gacaattgtatccatacttttacgtgtgggaattctgtaaacagtctcaTGACTTCCGGTTGATACGTA-AAAGAAA-ACCCTACTAAAATTGCTATTGATTATTGTTGTCATCAC----ATG----T--ATTTC----------------------AAT----ACTTA-----------------T---TGTTA--T-AATTTG-TTATCCA-T---TGTT-G------------GA-TAGCA--A---ATATAAATGTTAAA--TAG------------A-----AAAT-GT------------CGAAT-ATATC-TAATATGGATTTG---TATTTCGTGGATATCACCCACTAAAAATGGCGACTGTGATGCTC-----TTTTTTCTC-AGGTTATAtatt
gi|6 : taaaatagtaaataccagtcgtgaaccatttgtcatcattcatgcgttgtatatttcatttataaacatacaaaatacacttataacaatactgttaactaacaatacaattaaaacacttcgtaaaacaagaattgtgcgacaacttcttccaaaatatacccctataactaatggcatgaattTGACTTCCGGTTGAATTGTA-AAATAATTATGCGACTAAGATTCCTGTTGATTATTGTTGTCATCAC----ATC----T--ATTTT------G-----TACT-ATTT-AAC----ACTTAC--------------ATT----GTTA--T-CCATTG-TTAGACATTTGATGTT-A-AAAT---TT--GA-TAATA--AG-AAAATGAAT-TGAAA--TAA-TT-TGCGTATAA-TGTCAAAT-GTTACAGG-----CCAAAC-ATAT--GAATGGAACTATG---CATATCGAGGAACTCTCCCACAAAAACTGACAAATGT--TGTTC-----CATTTCCT--AGGTTATGAATTTGAA--CTATCTCTGAAAT---ATAT-GCT----GT---ATAC----GTTACTAA-------CCATCTTATATGAACAATAAC-ACTTT-ACAACTTTGCA-----TGACCTCATGACTGCA-GG-T-A--T--ATA-----TGAAATGAGTGAATAAAGGAT-ATTGTTT-TGTA---TTGTATTGTAgg
gi|7 : TGACTTCCGGTTGATATGTA-AAAGAAA-ACCCTACTAAAATTGCTATTGATTATTGTTGTCATCAC----ATG----T--ATTTC----------------------AAT----ACTTAT---TG---T-----------TATAA--T-TTATTA-TC---CA-------TT-A----T---TG--GA-TAGCA--A---ATATAAATGTTAAA--TAG------------A-----AAAT-GT------------CGAAT-ATATT-TAATATGGATTTG---TATTTCGTGGATATCATCCACTAAAAATGGCGACTGTGATGCTC-----TTTTTTCTC-AGGTTATAt
gi|8 : aatagtaaataccagtcgtgaaccatttgtcatcattcatgcattgtatatttcattaataaacatacaaaatacacttataacaatactgttaactaacaatacaattaaaacacttcgtaaaacaagaattgtgcgacaacttcttccaaaatatacccctataactaatggcatgaattGACTTCCGGTTGAGTTGTA-AAATAACTATGCGACTAAA-TTCCTATTGACTATTGTTGTCATCAC----ATC----T--ATTTTCAAACTG-----TACTTGTTC-AAT----AATTAT---TG---T----AATTATTTGTTA--T-CCACTG-TTGGACAGTAAATGTT----------TT--AA-TAATA--AG-AAAATCAAT-TGAAG--TAT-TT-TGCGTATAA-TATCAAAT-GTTTCGGG-----CCAAAT-ATACT-GAATATGACCATG---TATTTCGTTGAACTGACCAACAAAAATTTACCCATGTTATGTTC-----CTTTTCCC--AGATTATAAATTTAAA--ATATATTTGAAAT---ACAT-GCC----GT---ATAT----GTTACTAA-------CCATCTTATgg
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): ATAACCAGAGACATGTTTATATAATTAAGTCACTAAGCAAAGCAATATGTGATAATACTATAGTAAACATAACCAATAGTCACTAAGTGTCACGCAAACCAATATTTGATCAAAATATTGAACACTTAATAAAAGTGTCACTTTTCATATCTCGCGGGAGAAAAATCATGGCATGTCAGACGATTCTTCGACTTTAAAATAGCAAATATCAGCCGTGAACCATTTGTCATCATACATGCGTTGTATATTTCAGTTATATGCATACAAAGTGTGCTCTTAACAAAACTTTTAACTGATAACACTGTTAAAACACTTCGTAAAACAAGTATTGCGCGACAACTTTATAAAAAAATACACCAAATGGCATGAATTTGACTTCCGGTCGAT
Unaligned ( gi|21 ): AAATACCAGCCGTGGATCCGTTGTCAGCATACATGTTTGGTTTTAATCAATTAAACATGTATAATTGTATAATTTTGTCAATACAGACAGCTACCAATATTATCTATGACATCGTAAATGTTGGAATATATTGTGCGACATGTTTTCTAACATATA
Unaligned ( gi|31 ): GACATATCTACATCCAGGGGCGTAGCTAGCTATAAGTTATGTGCAGGAACA
Alignments
lowQualScore : 11111 6666666666666666666666 22222222222222 222 444444444444444 11111 11111 11111111111111 11 11111
lowQualScore : 11 4 1 55555 2 5 9999 99999 66 8888888888888888888888 8888 66666666666666 111 55 4 88 2 1 3 666666666666666 3 1 55 888 22222 1 555 33333 2 11 55 66666666666666 2 2 2 444 4 2 8 66666 00 0 33 444 2 5555 333 6666 6666666 2 7777 0 55555 4 2 2 33333 55555 3 1 3 0 666
lowQualScore : .. . . ..... . . .... ..... .. ...................... .... .............. ... .. . .. . . . ............... . . .. ... ..... . ... ..... . .. .. .............. . . . ... . . . ..... .. . .. ... . .... ... .... ....... . .... . ..... . . . ..... ..... . . . . ...
lowQualScore : 22 4 0 99999 6 3 4444 66666 11 6666666666666666666666 5555 22222222222222 000 55 0 11 6 2 5 666666666666666 6 8 00 555 55555 0 555 33333 0 55 77 00000000000000 7 7 6 777 8 0 8 22222 33 7 44 444 4 0000 999 6666 8888888 2 3333 1 66666 0 0 0 66666 33333 3 7 3 5 444
consensus : TGACTTCCGGTTGATATGTA-AAANAANTACGCNACTAAAATTNCTATTGATTATTGTTGTCATCAC----ATC----T--ATTTC------G-----TACT-ATTT-AAT----ACTTAC---TG---T----AATT---TGTTA--T-CCATTG-TTGGACAGTAGATGTT-A-A--T---TT--GA-TAACA--AG-AAAATNAAT-TNAAA--TAA-TT-TGCGTATAA-TGTCAAAT-GTTACAGG-----CCAAAT-ATATT-GAATATGACCATG---TATTTCGTGGAACTCTCCCACNAAAANTGACGAATGTGATGCTC-----CTTTTCCT--AGGTTATAAATTTGAA--ATATATTTGAAAT---ATAT-GCT----GT---ATAC----GTTACTAA-------CCATCTTATATGAGCCTTAAC-ACTTT-ACAATTTTGCA-----TGACCTCATGATTTCA-TG-T-A--T--ATG-----TGAACTGAGTGAATAAAGGAT-ATTGAAT-TGAA---TTGTATTGTA
Reference ( family-3523 ) : TGACTTCCGGTTGATATGTA-AAANAANTACGCNACTAAAATTNCTATTGATTATTGTTGTCATCAC----ATC----T--ATTTC------G-----TACT-ATTT-AAT----ACTTAC---TG---T----AATT---TGTTA--T-CCATTG-TTGGACAGTAGATGTT-A-A--T---TT--GA-TAACA--AG-AAAATNAAT-TNAAA--TAA-TT-TGCGTATAA-TGTCAAAT-GTTACAGG-----CCAAAT-ATATT-GAATATGACCATG---TATTTCGTGGAACTCTCCCACNAAAANTGACGAATGTGATGCTC-----CTTTTCCT--AGGTTATAAATTTGAA--ATATATTTGAAAT---ATAT-GCT----GT---ATAC----GTTACTAA-------CCATCTTATATGAGCCTTAAC-ACTTT-ACAATTTTGCA-----TGACCTCATGATTTCA-TG-T-A--T--ATG-----TGAACTGAGTGAATAAAGGAT-ATTGAAT-TGAA---TTGTATTGTA
gi|1 : TGACTTCCGGTTAATATGTG-AAAGAAAT------------TT--TATTGATTATTGTTGTCATCAC----ATC----GAAATTTC----------------------AAT----ACTTAG---TGTTAT----ACTT---TGTTA--T-TTCTTC-TTGGATATCAAATATA-A-A-------T--GA-CAAAT--AG-GAAAT---T-TCAAA--TAT-GT-TGAATAT
gi|1 : aagcactctgtataattcctttacataaccaatagtcacttagtgttatgcaaaccaatatgtgataataacattgaacatctgatattttaatcgccgttcaaaatcacacagaaataaaatgtcactaaagtcactttccgtatctcgcgggtgaaaaaatcatggcatgtcagacgattcttcgacatcaaaataataaataccagtcgtgaaccatttgtcatcatacatgcgttgtatatttcagttacatacatacaaaatactctcttaacaataatgttaactaataatgctgttaaaacacttcataatacgagtattgtgcgacaactttatccaaaatataccaaaagcaaatggcatgatttTATAAATGACAAAT------AGGAAATTTCAAAT-ATGTT-GAATATGGTTTTG---TGTTTTGTGGATATCTCCCACTAAAACTGACGAATGTGATGCTC-----TTTCTATT--ATGTTA-AAAggttttgtgttttgtggatatctcccactaaaactgacgaatgtgatgctctttctattatgttaaaagccc
gi|10 : aagcactctgtataattcctttacataaccaatagtcacttagtgttatgcaaaccaatatgtgataataacattgaacatctgatattttaatcgccgttcaaaatcacacagaaataaaatgtcactaaagtcactttccgtatctcgcgggtgaaaaaatcatggcatgtcagacgattcttcgacatcaaaataataaataccagtcgtgaaccatttgtcatcatacatgcgttgtatatttcagttacatacatacaaaatactctcttaacaataatgttaactaataatgctgttaaaacacttcataatacgagtattgtgcgacaactttatccaaaatataccaaaagcaaatggcatgattttgacttccggttaatatgtgaaagaaattttattgattattgttgtcatcacatcgaaatttcaatacttagtgttatactttgttatttcttcttggatatcaaaTTTGAAGCAAATATTAAAGAT---ACATTGCTTACAATGAAATACT---GTTACTAA-------CCATCTTATATAAGCCCTAACAAATAT-GCAATTATATA-----TGACCTCATGA-TTGA-TG-T-A-----ATGTTTTATGATCTGAGTGAATAAAGGTT-ATTGTAC-TGTATTGTTGTATTGTAgccc
gi|11 : atatcatataaatctcagtataaatagtatgtgaatttttcaaactgatagtcagtaagtttaaattatttttctcccaacaatttGAAAGTGGA-GTT----------TT--GA-CAATATAAGTAACATTC-T-TTAAACGTAA-TT-TGCGTATAA-TGTCAATT-GTTACAGG-----CAACAT-ATATT-GAATATAACCATG---TATTTCGTGGAACTTTCCCAC-AAAACTGACAAATG--AAGTTC-----CTTTTCCA--AGGTTATAAATTTAAA--ATATCTTTGAAAT---ATAT-GCT----GT---ATAC----GTTACTAAGTTTTAACGTTTTTATATGAGCCTGAAC-ACTTT-ATAATTTTGCA-----TGACCTCATGATTTTA-TG-T-A--T--ATG-----TGAACTGAGTGAATAAAGGaactatgtaatacacagagataatatattactaaacatgtacttacgatcacacgtctacat
gi|12 : gatttat-----CCAAATTATATT-GAATTTGATTATG---TAATTCGTGGAACTCTCCCACTAAAATTGACGAGTCTGATGCGC-----GTTTTCTC--AGGTTATAGATTTAAA--ACATATCCGAAAT---GTAT-TCT----AT---ATAC----GATATTTT-------ACGTCTTTTATGAGCCTCAAC-AC-TA-ACAATTGTGCA-----TGCCCTCATCTTTCCG-TG-T-ATTT--ATG-----TGAACTAAGTGAATTGAAAAT-AAGTAAC-TGAA---TTG
gi|13 : atatataatgtaacaatagacccctttCGGTCGATACGTATAAAGAAAAACCCTACTAAAATTGTTATTGACTATTGTTGTCATCAC----ACG----T--ATTTCGA----G-----TTGT-GTTC-AAT----ACTTACTATTA---T----AATT---TGTAA--T-CTATTG-TTGGATAGCAGATAT-----------------------------AAATG----TCAAA--T--------TGTA-AA-TTTCAAAT---------------------ATATT-GAATATGGTTTTG---TATTTCGTGGAACTCTCCCACTAAAATTGTTGAATGTGATGCTCTTAGACTTTTTCTC-AGATTATAa
gi|14 : AT-ATATTTAAATAT-ACCATTAACTACTTCTCGGAACTCTCCCGCCAACATGGATGACTTTGACGCTC-----CCTTTCTC--TTGTTATCAATTTAAA--ATGTATTTAAAAT---ATAT-ATT----GT---ATAG----GTTACTAA-------CCATCTCACATGAGCCTTAAC-AC--------TTTTGCA-----TGACCTCATGATTTCA-TG-T-AT-T--GTG-----TGAACTGAGTGAATAAAGGTT-ATTGCAT-TGAA---TTGggccc
gi|15 : taatAACT-ATATT-GAATATAAGCATG---TATATCGTGGTACTCTCCCAAGAAAACTGACAAATGT--TGTTC-----CTTTTCCT--AGGTTATGAATCTGAA--ATATCTTTAAGAT---ATAT-GCT----GT---TTAC----GTTACTAA-------CCATCTTATATGAGCCTTAAC-ACTTT-ACAACTTTGCA-----TGACCTCGTGATTTCA-TG-T-A--T--ATG-----TGGACTGAGTGactttttttcaggttt
gi|16 : gaatataatacatgtattaTGACGAATGCTATGCTG-----TTTTTTTTTCAGAT-ATAGATTTAAG--ATATATTTTAAAT---GTAT------------------------ACCAA-------CCA-------------------ACTT--ACAGTTTTGCA-----TGTCCTCATAGTTTCA-TA-T-A--TTTATG-----TGAACTGAGTAAATAAAGGAA-AATGAAT-TGAA---TTG
gi|17 : agcaagaaaatcgactgcactaaatattatgtctgatgtaaattataaaatttcaaattgaatatata---ATGC----TTTATTCA-------CCATCTTAAATTAGCCATAAC-ACTTT-AAAATGTCGTAAACTATGCCCTCTTGATTTCA-TG-T-A--TTTATG-----TGAACTGAGTGAATAAAGGAT-ATTGAATATGAC---TGGTTTTAT
gi|18 : tacattatctgtcactggaagagtacTTACAGG-----CCAAAT-ATATC-GAATATGACCATG---TATTTCGTGAAAATCTCCTATAAAAAATGACGAATGTGATGTTC-----CTTTTCTT--AGGTTATAGATTTAAC--ATATATTTGAAAC---ATAT-ACT----GT---ATGC----GTTACTAA-------CCATCTTATATGAGTCTTA-----T------ATTTTGTA-----TGATATTTTG---TCA-TA-T-ATTT--ATG-----TGAACTGAGTAAATTAAGAAcggaaacacaagaaaccatatgaaaacacaaacatgtaccttttacgaacgtttctacg
gi|19 : aGATGAATGTCGCGCGC-----ATTTGTTT---GATAATAAAATTTAA--ATGAATTTGGTAT---GTAC-ATT----GT---ATAT----GTTACTAA-------CGATCTTATAT--------AT-ATTTT-TGAATTTTGTA-----TGTCTACATGATTTCA-TA-TAA--T--GTG-----TGAACCGAGTGAATAAACGAT-TTTAAAA-TGAA---
gi|2 : attcTGACTTC-GGTTGATATGTA-AAAAAATC---CTACTAAAACTAATATTGATTATTCATGTCACCTC----ATT----T--ATTTT------GAGTTGTAGT-ATTT-AATTAATATGTAT---TG---T----TATT---TTTTAAATATCATTG-TTGGATAGTACA-GTA-A-A--TA--TTCCAA-TAACA--AT-AAAATCGAC-TAAAT--TAAATG-TGAGTATGA-TGTCAAAT-AGAAAATG-----TCAAAT-TAAAT-GAATATGAGTATA---TAATTTGTGGAACTCTCCCACTGAAGTTGACGATTGTGATGCTA-----GTTTTCTC--AGGCTAAAGATTTTGA--ATATATTTCAAAA---GTGT-TAT----AC---ATAC----ACTACTTA-------CCATCTTACAAGAGCCTTAAC-AC-TT-ACAATTTTGCA-----TTCCCTCATGATTGCA-TGTT-AT-T--ATA-----TGAACCGAG-AAATAAAGGAT-ATTGACT-TGAA---TTGaagaaattcaatgaaatacaacaaa
gi|20 : taatgacactcttaacaatactgataactaatattactgttaaacgctccataaaatcaatcactgtgtgacaaatttataaaaaaatatgccaagtgagaattatataagcacatgcaagaccgTTTGAA---TGTATTTGAAAT---ACAT-GCT----GT---ACAC----GCTACTAA-------CCATCTACTATGTCCCTTAAC-ACTTC-ACAAGTTTGCA-----CGAGCCCGTGATTTCA-TG-T-AT-T--ATG-----TG-ATTATGTGAACAa
gi|22 : tattTTTG-----TATATC--AAATGTAATAT-GTT----GT---ATACCTACATTACTAA-------TC-TCCCATACGACCCTTAAG-ACTTT-GCAATTTTGCA-----TGACCTCATGATTTCG-TG-T-cacaggcggcagtatcggtgtttggattaccccctttaccgattaaaaaaaaaa
gi|23 : caaatgcattttttaagccatatcctctgCCT--AGGTTATGAATCTGAA--ATATCTTTAAGAT---ATAT-GCT----GT---TTAC----GTTACTAA-------CCATCTTATATGAGCCTTAAC-ACTTT-ACTACTTTGAA-----TGACCTCGTGTTTTCA-TG-T-A--T--ATG-----TGGACTGAGTGAATAAtcaatgaaa
gi|24 : ------G-----TATT-ATTTCAAT----ACTTAT---TA---TTATAAATT---TGTTG--T-CGATTAATTAGATAGCAAGTGTA-A-A--TATTTC--AA-TATCA--AG-AAAATCGAC-TGAAC--TAA-CTGTATGTAGGA-TGTCGAATAGTTA
gi|25 : g----GTTACTAT-------CAAT-TTA-ATGAGCATTACA-ACTTTTATAATTTTTAA-----TAAACTCAAGATTTCATTG-T-A--T--ATA-----TGAACTGAttgttaagt
gi|26 : tacatacatattTCATGATTTCA-TG-T-T--T---TA-----TGAACTAAGTGAAT-AACGATAATTGAAT-TG
gi|27 : aatcagcgacattcagaatgtcgtgtaagcagT-GCT----GT---ATGC----GTTACTAA-------CCATTTTATATGAGCCTTTAT-GCGTT-ACATTTGTGCA-----TGACCTCACAATGTC
gi|28 : ACGTCATGATTACAATA-T-T--T--ATA-----TGAGATGGGTGAATAAATGAT-ATTGTAA-TGTA---TTGt
gi|29 : CCTCATGATTTCA-TG-C-A--TT-ATG-----TAAATTGAGTGAATGAAGGGT-ATCGAAT-CGAA---CTG
gi|3 : -AAATAACTATGCGACTAAAATTCCTATTGATTATTGTTGTCATCACGAATATCACAAT--ATTTTCGAATTG-----TACT-ATTTCAAC----ACTTAC---TG---T----AATTATTTGTTA--T-CCATTG-TTGGACTGTAGGTGTTTATA--T---TT--GAATAATA--AG-ATAATAAAT-TGAAG--TAA-TT-TGCGTATTT-TGTCAAAT-GTTATTGG-----CCAAAT-ATATT-GAATATAAACATG---TATATCGTGGAACTCTCCCACAAAAAATGACAAATGT--TGTTC-----CTTTTCCT--AGGTTATGAATTTGAA--ATATCTTTGAAAT---GTAT-GCT----GT---ATAC----GTTACTTA-------CAATCGTATATGAACCCTAAC-ACT-------------------TGATTTCAT------A-TA-T-A--T--ATG-----TGAACTGAATGAATAA
gi|30 : taataagtttataaataataatacgatgtatatataacttcatactagtaagacagttacgttgctacctaataggccaataatAT-GTATT-GAATATGATTTTA---TATTTCGTGGAGCTCTCCAACt
gi|4 : gaatattaaatatACTTCCGGTTGAATTATA-AAATAACTATGCGACTAAAATTTCTATTCATCATTGTTGTCATCAT----ATC----T--ATTTTCGAATGG-----TACC-ATTT-CAA----ACCTAC---AA---T----AATAACATGTTA--T-CGATTT-TTGGACAGTAGACGTT-A-A--TATTTT--AA-TCATA--AG-TAAATGATT-TGAAC--TAA-TT-TGCGTTTAA-GGTCAAAT-GTTACAGG-----CCAAAT-ATATT-GAATATAACCATG---TATATCGTGGAAC--------------TAACAAATGT--TGTTC-----CTTTTCCT--AGGTTATGAA---------------TGAAAT---GTAT-GCT----GT---ATAT----GTTACTTA-------CCATCTTATATGAGCCTTAAC-AC----------------------------TGATTGCA-TG-T-A--T--ATG-----TGAACTGAGTGAATAAAGGAT-ATTGTAT-TGTA---TTGTATTGT
gi|5 : gacaattgtatccatacttttacgtgtgggaattctgtaaacagtctcaTGACTTCCGGTTGATACGTA-AAAGAAA-ACCCTACTAAAATTGCTATTGATTATTGTTGTCATCAC----ATG----T--ATTTC----------------------AAT----ACTTAT---TG---TTAT-AATT---TGTTA--T-CCAT---------------TGTT-G------------GA-TAGCA--A---ATATAAATGTTAAA--TAG------------A-----AAAT-GT------------CGAAT-ATATC-TAATATGGATTTG---TATTTCGTGGATATCACCCACTAAAAATGGCGACTGTGATGCTC-----TTTTTTCTC-AGGTTATAtatt
gi|6 : taaaatagtaaataccagtcgtgaaccatttgtcatcattcatgcgttgtatatttcatttataaacatacaaaatacacttataacaatactgttaactaacaatacaattaaaacacttcgtaaaacaagaattgtgcgacaacttcttccaaaatatacccctataactaatggcatgaattTGACTTCCGGTTGAATTGTA-AAATAATTATGCGACTAAGATTCCTGTTGATTATTGTTGTCATCAC----ATC----T--ATTTT------G-----TACT-ATTT-AAC----ACTTAC--------------ATT----GTTA--T-CCATTG-TTAGACATTTGATGTT-A-AAAT---TT--GA-TAATA--AG-AAAATGAAT-TGAAA--TAA-TT-TGCGTATAA-TGTCAAAT-GTTACAGG-----CCAAAC-ATAT--GAATGGAACTATG---CATATCGAGGAACTCTCCCACAAAAACTGACAAATGT--TGTTC-----CATTTCCT--AGGTTATGAATTTGAA--CTATCTCTGAAAT---ATAT-GCT----GT---ATAC----GTTACTAA-------CCATCTTATATGAACAATAAC-ACTTT-ACAACTTTGCA-----TGACCTCATGACTGCA-GG-T-A--T--ATA-----TGAAATGAGTGAATAAAGGAT-ATTGTTT-TGTA---TTGTATTGTAgg
gi|7 : TGACTTCCGGTTGATATGTA-AAAGAAA-ACCCTACTAAAATTGCTATTGATTATTGTTGTCATCAC----ATG----T--ATTTC----------------------AAT----ACTTAT---TG---TTAT-AATT---TATTA--T-CCATT---------------------A--T---TG--GA-TAGCA--A---ATATAAATGTTAAA--TAG------------A-----AAAT-GT------------CGAAT-ATATT-TAATATGGATTTG---TATTTCGTGGATATCATCCACTAAAAATGGCGACTGTGATGCTC-----TTTTTTCTC-AGGTTATAt
gi|8 : aatagtaaataccagtcgtgaaccatttgtcatcattcatgcattgtatatttcattaataaacatacaaaatacacttataacaatactgttaactaacaatacaattaaaacacttcgtaaaacaagaattgtgcgacaacttcttccaaaatatacccctataactaatggcatgaattGACTTCCGGTTGAGTTGTA-AAATAACTATGCGACTAAA-TTCCTATTGACTATTGTTGTCATCAC----ATC----T--ATTTTCAAACTG-----TACTTGTTC-AAT----AATTAT---TG---T----AATTATTTGTTA--T-CCACTG-TTGGACAGTAAATGTT----------TT--AA-TAATA--AG-AAAATCAAT-TGAAG--TAT-TT-TGCGTATAA-TATCAAAT-GTTTCGGG-----CCAAAT-ATACT-GAATATGACCATG---TATTTCGTTGAACTGACCAACAAAAATTTACCCATGTTATGTTC-----CTTTTCCC--AGATTATAAATTTAAA--ATATATTTGAAAT---ACAT-GCC----GT---ATAT----GTTACTAA-------CCATCTTATgg
blockSeqs : TA T G AAACC T G GAAT CACAA . CGAATTGTACTATTTC TAAT TTATTATA ATT AA A AA A G T AAATATTCC A T TA GTA AAATG T ACG AATG C TA T GTTACAGG T T C AAC T C G TTAGA TC . GTA . . . CTAC GTTTTAA . TTTT AACTA T T A TTT . A A A .
blockSeqs : TA . A CTATG T A . G . CAAACTGTACTTGTTC . CTATTAT ACA . . G T G T AAATATTTC . C . TA AAATG C A ACTG T TG T AGAAAATG . . T . T T G . C . . . . . . . . TTT . A . . TTT . . C . .
blockSeqs : AT . T CTATG G C . T . CGAATGGTACCATTT . TTGTTAT ATT . . G T C T TAATATTTT . C . GA CGAC A T ATT A GG T GTTATTGG . . T . C T G . C . . . . . . . . TTT . . . . TTT . . A . .
blockSeqs : TA . T TTATG G T . C . GAGTTGTAGTATTT . TTGTTAT . . . G T A C TTATATTT . T . GA CGAC G C ATT T TT T GTTACAGG . . C . G T T . C . . . . . . . . TTT . . . . TTT . . A . .
blockSeqs : AT . G CTATG T G . G . GAGTTGTGTTC . TTGT . . . T C G T TAAAATTT . T . GT AAAT G G ATT C TA T GTTACAGG . . G . A C G . . . . . . . . . . TTT . . . . TT . . A . .
blockSeqs : TA . T AACC G C . C . GTATTATTTC . CTGT . . . G C G T ATTG . C . GA GATT G C ATT C TA G GTTTCGGG . . C . T A C . . . . . . . . . . TTC . . . . TT . . A . .
blockSeqs : GT . G AACC T G . G . GTACTATTT . CAAT . . . G C G T TTT . T . GA GAAT T A TTT C TA T GT . . G . A T G . . . . . . . . . . TTT . . . . TT . . A . .
blockSeqs : . T TC G C . C . . . TTGT . . . . C A . TTT . C . . CAAT G A G C A T GT . . A . T A G . . . . . . . . . . TTT . . . . TT . . T . .
blockSeqs : . . C . . . . . . . TG . T . . TCT T A G . . . . . . T . A A G . . . . . . . . . . GTT . . . . T . . A . .
blockSeqs : . . . . . . . . G G G . . . . . . C . T C T . . . . . . . . . . TTT . . . . T . . T . .
blockSeqs : . . A . A A . . . . . . . . . . . TA . . . . T . . T .
blockSeqs : . . C . . T . . . . . . . . . . . TT . . . . T .
blockSeqs : . . A . . . . . . . . . . . . . . TT . . . . T .
blockSeqs : . . C . . . . . . . . . . . . T . . . . T .
blockSeqs : . . . . . . . . . . . T . . . . T .
blockSeqs : . . . . . . . . . . . . T .
blockSeqs : . . . . . . . . . T .
blockSeqs : . . . . . T .
blockSeqs : . . .
blockSeqCons : CTATG ** GAGTTGTACTATTTC******* CTGTTAT******* TAATTT********* CGAT* T* ** **** *** **** T**** ***** ***
originalCons : TGACTTCCGGTTGATATGTA-AAANAANTACGCNACTAAAATTNCTATTGATTATTGTTGTCATCAC----ATC----T--ATTTC------G-----TACT-ATTT-AAT----ACTTAC---TG---T----AATT---TGTTA--T-CCATTG-TTGGACAGTAGATGTT-A-A--T---TT--GA-TAACA--AG-AAAATNAAT-TNAAA--TAA-TT-TGCGTATAA-TGTCAAAT-GTTACAGG-----CCAAAT-ATATT-GAATATGACCATG---TATTTCGTGGAACTCTCCCACNAAAANTGACGAATGTGATGCTC-----CTTTTCCT--AGGTTATAAATTTGAA--ATATATTTGAAAT---ATAT-GCT----GT---ATAC----GTTACTAA-------CCATCTTATATGAGCCTTAAC-ACTTT-ACAATTTTGCA-----TGACCTCATGATTTCA-TG-T-A--T--ATG-----TGAACTGAGTGAATAAAGGAT-ATTGAAT-TGAA---TTGTATTGTA
finalCons : TGACTTCCGGTTGATATGTA-AAANAACTATGCNACTAAAATTNCTATTGATTATTGTTGTCATCAC----ATC----T--ATTTCGAGTTGTACTATTTC-------AAT----ACTTACTGTTAT-------AATT---TGTTA--T-CCATTG-TTGGACAGTAGATGTTAATTT---------GA-TAACA--AG-AAAATCGAT-TNAAA--TAA-TT-TGCGTATAAT-GTCAAAT-GTTACAGG-----CCAAAT-ATATT-GAATATGACCATG---TATTTCGTGGAACTCTCCCACNAAAANTGACGAATGTGATGCTC-----CTTTTCCT--AGGTTATAAATTTGAA--ATATATTTGAAAT---ATAT-GCT----GT---ATAC----GTTACTAA-------CCATCTTATATGAGCCTTAAC-ACTTT-ACAATTTTGCA-----TGACCTCATGATTTCA-TG-T-AT----ATG-----TGAACTGAGTGAATAAAGGAT-ATTGAAT-TGAA---TTGTATTGTA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): ATAACCAGAGACATGTTTATATAATTAAGTCACTAAGCAAAGCAATATGTGATAATACTATAGTAAACATAACCAATAGTCACTAAGTGTCACGCAAACCAATATTTGATCAAAATATTGAACACTTAATAAAAGTGTCACTTTTCATATCTCGCGGGAGAAAAATCATGGCATGTCAGACGATTCTTCGACTTTAAAATAGCAAATATCAGCCGTGAACCATTTGTCATCATACATGCGTTGTATATTTCAGTTATATGCATACAAAGTGTGCTCTTAACAAAACTTTTAACTGATAACACTGTTAAAACACTTCGTAAAACAAGTATTGCGCGACAACTTTATAAAAAAATACACCAAATGGCATGAATTTGACTTCCGGTCGAT
Unaligned ( gi|21 ): AAATACCAGCCGTGGATCCGTTGTCAGCATACATGTTTGGTTTTAATCAATTAAACATGTATAATTGTATAATTTTGTCAATACAGACAGCTACCAATATTATCTATGACATCGTAAATGTTGGAATATATTGTGCGACATGTTTTCTAACATATA
Unaligned ( gi|31 ): GACATATCTACATCCAGGGGCGTAGCTAGCTATAAGTTATGTGCAGGAACA
Alignments
lowQualScore : 22 4444444444444444444444 44444444444444444444 1111 2222 11 11111
lowQualScore : 11 4 1 11 3 2 11 9999 6666666666666666666666 777 0 1 77 777 3 4 1 1 55555555555555555555 1111 3 6666 1 99 666 4 8 4 2 1 88888 2 2 2 444 4 2 8 66666 00 0 33 444 2 5555 333 6666 6666666 2 7777 0 55555 4 2 2 33333 55555 3 1 3 0 666
lowQualScore : .. . . .. . . .. .... ...................... ... . . .. ... . . . . .................... .... . .... . .. ... . . . . . ..... . . . ... . . . ..... .. . .. ... . .... ... .... ....... . .... . ..... . . . ..... ..... . . . . ...
lowQualScore : 22 4 0 33 9 6 11 4444 2222222222222222222222 000 5 2 55 000 2 0 0 3 22222222222222222222 6666 6 5555 0 55 666 0 0 0 4 6 33333 7 7 6 777 8 0 8 22222 33 7 44 444 4 0000 999 6666 8888888 2 3333 1 66666 0 0 0 66666 33333 3 7 3 5 444
consensus : TGACTTCCGGTTGATATGTA-AAANAANTACGCNACTAAAATTNCTATTGATTATTGTTGTCATCAC----ATC----TA-TTT-CGAATTGTACTATTT---CAATACTTACTGTTAT-AATTTGT---TATCCATT-GTTGGATAGCAGATGT---T-A-A---T-TT--GA-TAANA--AG-AAAAT-CGATTNAAA--TA-A-TT-TGCGTATAA-TGTCAAAT-GTTACAGG-----CCAAAT-ATATT-GAATATGACCATG---TATTTCGTGGAACTCTCCCACNAAAANTGACGAATGTGATGCTC-----CTTTTCCT--AGGTTATAAATTTGAA--ATATATTTGAAAT---ATAT-GCT----GT---ATAC----GTTACTAA-------CCATCTTATATGAGCCTTAAC-ACTTT-ACAATTTTGCA-----TGACCTCATGATTTCA-TG-T-A--T--ATG-----TGAACTGAGTGAATAAAGGAT-ATTGAAT-TGAA---TTGTATTGTA
Reference ( family-3523 ) : TGACTTCCGGTTGATATGTA-AAANAACTATGCNACTAAAATTNCTATTGATTATTGTTGTCATCAC----ATC----TA-TTT-CGAGTTGTACTATTT---CAATACTTACTGTTAT-AATTTGT---TATCCATT-GTTGGACAGTAGATGT---T-A-A---T-TT--GA-TAACA--AG-AAAAT-CGATTNAAA--TA-A-TT-TGCGTATAA-TGTCAAAT-GTTACAGG-----CCAAAT-ATATT-GAATATGACCATG---TATTTCGTGGAACTCTCCCACNAAAANTGACGAATGTGATGCTC-----CTTTTCCT--AGGTTATAAATTTGAA--ATATATTTGAAAT---ATAT-GCT----GT---ATAC----GTTACTAA-------CCATCTTATATGAGCCTTAAC-ACTTT-ACAATTTTGCA-----TGACCTCATGATTTCA-TG-T-A--T--ATG-----TGAACTGAGTGAATAAAGGAT-ATTGAAT-TGAA---TTGTATTGTA
gi|1 : TGACTTCCGGTTAATATGTG-AAAGAA-------------ATTT-TATTGATTATTGTTGTCATCAC----ATC------------GAA-------ATTT---CAATACTTAGTGTTAT-ACTTTGT---TATTTCTT-CTTGGATATCAAATAT---A-A-A------T--GA-CAAAT--AG-GAAAT----TTCAAA--TA-T-GT-TGAATAT
gi|1 : aagcactctgtataattcctttacataaccaatagtcacttagtgttatgcaaaccaatatgtgataataacattgaacatctgatattttaatcgccgttcaaaatcacacagaaataaaatgtcactaaagtcactttccgtatctcgcgggtgaaaaaatcatggcatgtcagacgattcttcgacatcaaaataataaataccagtcgtgaaccatttgtcatcatacatgcgttgtatatttcagttacatacatacaaaatactctcttaacaataatgttaactaataatgctgttaaaacacttcataatacgagtattgtgcgacaactttatccaaaatataccaaaagcaaatggcatgatttTATAAATGACAAAT------AGGAAATTTCAAAT-ATGTT-GAATATGGTTTTG---TGTTTTGTGGATATCTCCCACTAAAACTGACGAATGTGATGCTC-----TTTCTATT--ATGTTA-AAAggttttgtgttttgtggatatctcccactaaaactgacgaatgtgatgctctttctattatgttaaaagccc
gi|10 : aagcactctgtataattcctttacataaccaatagtcacttagtgttatgcaaaccaatatgtgataataacattgaacatctgatattttaatcgccgttcaaaatcacacagaaataaaatgtcactaaagtcactttccgtatctcgcgggtgaaaaaatcatggcatgtcagacgattcttcgacatcaaaataataaataccagtcgtgaaccatttgtcatcatacatgcgttgtatatttcagttacatacatacaaaatactctcttaacaataatgttaactaataatgctgttaaaacacttcataatacgagtattgtgcgacaactttatccaaaatataccaaaagcaaatggcatgattttgacttccggttaatatgtgaaagaaattttattgattattgttgtcatcacatcgaaatttcaatacttagtgttatactttgttatttcttcttggatatcaaaTTTGAAGCAAATATTAAAGAT---ACATTGCTTACAATGAAATACT---GTTACTAA-------CCATCTTATATAAGCCCTAACAAATAT-GCAATTATATA-----TGACCTCATGA-TTGA-TG-T-A-----ATGTTTTATGATCTGAGTGAATAAAGGTT-ATTGTAC-TGTATTGTTGTATTGTAgccc
gi|11 : atatcatataaatctcagtataaatagtatgtgaatttttcaaactgatagtcagtaagtttaaattatttttctcccaacaatttGAAAGTGGA-GT---T---------TT--GA-CAATATAAGTAACATTC--TTTAAACGTA-A-TT-TGCGTATAA-TGTCAATT-GTTACAGG-----CAACAT-ATATT-GAATATAACCATG---TATTTCGTGGAACTTTCCCAC-AAAACTGACAAATG--AAGTTC-----CTTTTCCA--AGGTTATAAATTTAAA--ATATCTTTGAAAT---ATAT-GCT----GT---ATAC----GTTACTAAGTTTTAACGTTTTTATATGAGCCTGAAC-ACTTT-ATAATTTTGCA-----TGACCTCATGATTTTA-TG-T-A--T--ATG-----TGAACTGAGTGAATAAAGGaactatgtaatacacagagataatatattactaaacatgtacttacgatcacacgtctacat
gi|12 : gatttat-----CCAAATTATATT-GAATTTGATTATG---TAATTCGTGGAACTCTCCCACTAAAATTGACGAGTCTGATGCGC-----GTTTTCTC--AGGTTATAGATTTAAA--ACATATCCGAAAT---GTAT-TCT----AT---ATAC----GATATTTT-------ACGTCTTTTATGAGCCTCAAC-AC-TA-ACAATTGTGCA-----TGCCCTCATCTTTCCG-TG-T-ATTT--ATG-----TGAACTAAGTGAATTGAAAAT-AAGTAAC-TGAA---TTG
gi|13 : atatataatgtaacaatagacccctttCGGTCGATACGTATAAAGAAAAACCCTACTAAAATTGTTATTGACTATTGTTGTCATCAC----ACG----TA-TTT-CGAGTTGTG----TT---CAATACTTACTATTAT-AATTTGT---AATCTATT-GTTGGATAGCAGATAT-------------------------------AAAT--G--TCAAA--T---------TGTA-AA-TTTCAAAT-AT--------------------ATT-GAATATGGTTTTG---TATTTCGTGGAACTCTCCCACTAAAATTGTTGAATGTGATGCTCTTAGACTTTTTCTC-AGATTATAa
gi|14 : AT-ATATTTAAATAT-ACCATTAACTACTTCTCGGAACTCTCCCGCCAACATGGATGACTTTGACGCTC-----CCTTTCTC--TTGTTATCAATTTAAA--ATGTATTTAAAAT---ATAT-ATT----GT---ATAG----GTTACTAA-------CCATCTCACATGAGCCTTAAC-AC--------TTTTGCA-----TGACCTCATGATTTCA-TG-T-AT-T--GTG-----TGAACTGAGTGAATAAAGGTT-ATTGCAT-TGAA---TTGggccc
gi|15 : taatAACT-ATATT-GAATATAAGCATG---TATATCGTGGTACTCTCCCAAGAAAACTGACAAATGT--TGTTC-----CTTTTCCT--AGGTTATGAATCTGAA--ATATCTTTAAGAT---ATAT-GCT----GT---TTAC----GTTACTAA-------CCATCTTATATGAGCCTTAAC-ACTTT-ACAACTTTGCA-----TGACCTCGTGATTTCA-TG-T-A--T--ATG-----TGGACTGAGTGactttttttcaggttt
gi|16 : gaatataatacatgtattaTGACGAATGCTATGCTG-----TTTTTTTTTCAGAT-ATAGATTTAAG--ATATATTTTAAAT---GTAT------------------------ACCAA-------CCA-------------------ACTT--ACAGTTTTGCA-----TGTCCTCATAGTTTCA-TA-T-A--TTTATG-----TGAACTGAGTAAATAAAGGAA-AATGAAT-TGAA---TTG
gi|17 : agcaagaaaatcgactgcactaaatattatgtctgatgtaaattataaaatttcaaattgaatatata---ATGC----TTTATTCA-------CCATCTTAAATTAGCCATAAC-ACTTT-AAAATGTCGTAAACTATGCCCTCTTGATTTCA-TG-T-A--TTTATG-----TGAACTGAGTGAATAAAGGAT-ATTGAATATGAC---TGGTTTTAT
gi|18 : tacattatctgtcactggaagagtacTTACAGG-----CCAAAT-ATATC-GAATATGACCATG---TATTTCGTGAAAATCTCCTATAAAAAATGACGAATGTGATGTTC-----CTTTTCTT--AGGTTATAGATTTAAC--ATATATTTGAAAC---ATAT-ACT----GT---ATGC----GTTACTAA-------CCATCTTATATGAGTCTTA-----T------ATTTTGTA-----TGATATTTTG---TCA-TA-T-ATTT--ATG-----TGAACTGAGTAAATTAAGAAcggaaacacaagaaaccatatgaaaacacaaacatgtaccttttacgaacgtttctacg
gi|19 : aGATGAATGTCGCGCGC-----ATTTGTTT---GATAATAAAATTTAA--ATGAATTTGGTAT---GTAC-ATT----GT---ATAT----GTTACTAA-------CGATCTTATAT--------AT-ATTTT-TGAATTTTGTA-----TGTCTACATGATTTCA-TA-TAA--T--GTG-----TGAACCGAGTGAATAAACGAT-TTTAAAA-TGAA---
gi|2 : attcTGACTTC-GGTTGATATGTA-AAAAAA---TCCTACTAAAACTAATATTGATTATTCATGTCACCTC----ATT----TA-TTT-TGAGTTGTAGTATTTAATTAATATGTATTGTTAT---TTTTTAAATATC-ATT-GTTGGATAGTACA-GT---A-A-A---TATTCCAA-TAACA--AT-AAAAT-CGACTAAAT--TA-AATG-TGAGTATGA-TGTCAAAT-AGAAAATG-----TCAAAT-TAAAT-GAATATGAGTATA---TAATTTGTGGAACTCTCCCACTGAAGTTGACGATTGTGATGCTA-----GTTTTCTC--AGGCTAAAGATTTTGA--ATATATTTCAAAA---GTGT-TAT----AC---ATAC----ACTACTTA-------CCATCTTACAAGAGCCTTAAC-AC-TT-ACAATTTTGCA-----TTCCCTCATGATTGCA-TGTT-AT-T--ATA-----TGAACCGAG-AAATAAAGGAT-ATTGACT-TGAA---TTGaagaaattcaatgaaatacaacaaa
gi|20 : taatgacactcttaacaatactgataactaatattactgttaaacgctccataaaatcaatcactgtgtgacaaatttataaaaaaatatgccaagtgagaattatataagcacatgcaagaccgTTTGAA---TGTATTTGAAAT---ACAT-GCT----GT---ACAC----GCTACTAA-------CCATCTACTATGTCCCTTAAC-ACTTC-ACAAGTTTGCA-----CGAGCCCGTGATTTCA-TG-T-AT-T--ATG-----TG-ATTATGTGAACAa
gi|22 : tattTTTG-----TATATC--AAATGTAATAT-GTT----GT---ATACCTACATTACTAA-------TC-TCCCATACGACCCTTAAG-ACTTT-GCAATTTTGCA-----TGACCTCATGATTTCG-TG-T-cacaggcggcagtatcggtgtttggattaccccctttaccgattaaaaaaaaaa
gi|23 : caaatgcattttttaagccatatcctctgCCT--AGGTTATGAATCTGAA--ATATCTTTAAGAT---ATAT-GCT----GT---TTAC----GTTACTAA-------CCATCTTATATGAGCCTTAAC-ACTTT-ACTACTTTGAA-----TGACCTCGTGTTTTCA-TG-T-A--T--ATG-----TGGACTGAGTGAATAAtcaatgaaa
gi|24 : GTATTATTT---CAATACTTATTATTATAAATTTGT---TGTCGATTAATTAGATAGCAAGTGTAAAT-A-T---T-TC--AA-TATCA--AG-AAAAT-CGACTGAAC--TA-A-CTGTATGTAGGA-TGTCGAATAGTTA
gi|25 : g----GTTACTAT-------CAAT-TTA-ATGAGCATTACA-ACTTTTATAATTTTTAA-----TAAACTCAAGATTTCATTG-T-A--T--ATA-----TGAACTGAttgttaagt
gi|26 : tacatacatattTCATGATTTCA-TG-T-T--T---TA-----TGAACTAAGTGAAT-AACGATAATTGAAT-TG
gi|27 : aatcagcgacattcagaatgtcgtgtaagcagT-GCT----GT---ATGC----GTTACTAA-------CCATTTTATATGAGCCTTTAT-GCGTT-ACATTTGTGCA-----TGACCTCACAATGTC
gi|28 : ACGTCATGATTACAATA-T-T--T--ATA-----TGAGATGGGTGAATAAATGAT-ATTGTAA-TGTA---TTGt
gi|29 : CCTCATGATTTCA-TG-C-A--TT-ATG-----TAAATTGAGTGAATGAAGGGT-ATCGAAT-CGAA---CTG
gi|3 : -AAATAACTATGCGACTAAAATTCCTATTGATTATTGTTGTCATCACGAATATCACAATA-TTTTCGAATTGTACTATTT---CAACACTTACTGTAAT-TATTTGT---TATCCATT-GTTGGACTGTAGGTGT---TTATA---T-TT--GAATAATA--AG-ATAAT-AAATTGAAG--TA-A-TT-TGCGTATTT-TGTCAAAT-GTTATTGG-----CCAAAT-ATATT-GAATATAAACATG---TATATCGTGGAACTCTCCCACAAAAAATGACAAATGT--TGTTC-----CTTTTCCT--AGGTTATGAATTTGAA--ATATCTTTGAAAT---GTAT-GCT----GT---ATAC----GTTACTTA-------CAATCGTATATGAACCCTAAC-ACT-------------------TGATTTCAT------A-TA-T-A--T--ATG-----TGAACTGAATGAATAA
gi|30 : taataagtttataaataataatacgatgtatatataacttcatactagtaagacagttacgttgctacctaataggccaataatAT-GTATT-GAATATGATTTTA---TATTTCGTGGAGCTCTCCAACt
gi|4 : gaatattaaatatACTTCCGGTTGAATTATA-AAATAACTATGCGACTAAAATTTCTATTCATCATTGTTGTCATCAT----ATC----TATTTT-CGAATGGTACCATTT---CAA-ACCTACAATAAT-AACATGT---TATCGATT-TTTGGACAGTAGACGT---T-A-ATATT-TT--AA-TCATA--AG-TAAAT--GATTTGAAC-TA-A-TT-TGCGTTTAA-GGTCAAAT-GTTACAGG-----CCAAAT-ATATT-GAATATAACCATG---TATATCGTGGAAC--------------TAACAAATGT--TGTTC-----CTTTTCCT--AGGTTATGAA---------------TGAAAT---GTAT-GCT----GT---ATAT----GTTACTTA-------CCATCTTATATGAGCCTTAAC-AC----------------------------TGATTGCA-TG-T-A--T--ATG-----TGAACTGAGTGAATAAAGGAT-ATTGTAT-TGTA---TTGTATTGT
gi|5 : gacaattgtatccatacttttacgtgtgggaattctgtaaacagtctcaTGACTTCCGGTTGATACGTA-AAAGAAA-ACCCTACTAAAATTGCTATTGATTATTGTTGTCATCAC----AT-------------G--------TATTT---CAATACTTATTGTTAT-AATTTGT---TATCCATT-GTTGGATAGCAAATAT---A-A-A---T-GT-----TAAAT--AG-AAAAT-tatt
gi|5 : taaaatagtaaataccagtcgtgaaccatttgtcatcattcatgcgttgtatatttcatttataaacatacaaaatacacttataacaatactgttaactaacaatacaattaaaacacttcgtaaaacaagaattgtgcgacaacttcttccaaaatatacccctataactaatggcatgaattG-----TCGAAT-ATATC-TAATATGGATTTG---TATTTCGTGGATATCACCCACTAAAAATGGCGACTGTGATGCTC-----TTTTTTCTC-AGGTTATAgtcgaatatatctaatatggatttgtatttcgtggatatcacccactaaaaatggcgactgtgatgctcttttttctcaggttatagg
gi|6 : taaaatagtaaataccagtcgtgaaccatttgtcatcattcatgcgttgtatatttcatttataaacatacaaaatacacttataacaatactgttaactaacaatacaattaaaacacttcgtaaaacaagaattgtgcgacaacttcttccaaaatatacccctataactaatggcatgaatttgacttccggttgatacgtaaaagaaaaccctactaaaattgctattgattattgttgtcatcacatgtatttcaatacttattgttataatttgttatccattgttggatagcaaatataaatgttaaatagaaaatTGACTTCCGGTTGAATTGTA-AAATAATTATGCGACTAAGATTCCTGTTGATTATTGTTGTCATCAC----ATC----TA-TTT------TGTACTATTT----AACACTTAC--------ATT-GT---TATCCATT-GTTAGACATTTGATGT---T-A-AAA-T-TT--GA-TAATA--AG-AAAAT-GAATTGAAA--TA-A-TT-TGCGTATAA-TGTCAAAT-GTTACAGG-----CCAAAC-ATAT--GAATGGAACTATG---CATATCGAGGAACTCTCCCACAAAAACTGACAAATGT--TGTTC-----CATTTCCT--AGGTTATGAATTTGAA--CTATCTCTGAAAT---ATAT-GCT----GT---ATAC----GTTACTAA-------CCATCTTATATGAACAATAAC-ACTTT-ACAACTTTGCA-----TGACCTCATGACTGCA-GG-T-A--T--ATA-----TGAAATGAGTGAATAAAGGAT-ATTGTTT-TGTA---TTGTATTGTAgg
gi|7 : TGACTTCCGGTTGATATGTA-AAAGAAA-ACCCTACTAAAATTGCTATTGATTATTGTTGTCATCAC----AT-------------G--------TATTT---CAATACTTATTGTTAT-AATTTAT---TATCCATT-ATTGGATAGCAAATAT---A-A-A---T-GT-----TAAAT--AG-AAAAT--G--TCGAA--TATA-TT-Tt
gi|7 : aatagtaaataccagtcgtgaaccatttgtcatcattcatgcattgtatatttcattaataaacatacaaaatacacttataacaatactgttaactaacaatacaattaaaacacttcgtaaaacaagaattgtgcgacaacttcttccaaaatatacccctataactaatggcatgaattTATAAATGTTAAAT-AGAAAATG-----TCGAAT-ATATT-TAATATGGATTTG---TATTTCGTGGATATCATCCACTAAAAATGGCGACTGTGATGCTC-----TTTTTTCTC-AGGTTATAaatatggatttgtatttcgtggatatcatccactaaaaatggcgactgtgatgctcttttttctcaggttatagg
gi|8 : aatagtaaataccagtcgtgaaccatttgtcatcattcatgcattgtatatttcattaataaacatacaaaatacacttataacaatactgttaactaacaatacaattaaaacacttcgtaaaacaagaattgtgcgacaacttcttccaaaatatacccctataactaatggcatgaatttgacttccggttgatatgtaaaagaaaaccctactaaaattgctattgattattgttgtcatcacatgtatttcaatacttattgttataatttattatccattattggatagcaaaGACTTCCGGTTGAGTTGTA-AAATAACTATGCGACTAAA-TTCCTATTGACTATTGTTGTCATCAC----ATC----TA-TTTTCAAACTGTACTTGTT---CAATAATTATTGTAAT-TATTTGT---TATCCACT-GTTGGACAGTAAATGT---T---------TT--AA-TAATA--AG-AAAAT-CAATTGAAG--TA-T-TT-TGCGTATAA-TATCAAAT-GTTTCGGG-----CCAAAT-ATACT-GAATATGACCATG---TATTTCGTTGAACTGACCAACAAAAATTTACCCATGTTATGTTC-----CTTTTCCC--AGATTATAAATTTAAA--ATATATTTGAAAT---ACAT-GCC----GT---ATAT----GTTACTAA-------CCATCTTATgg
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): ATAACCAGAGACATGTTTATATAATTAAGTCACTAAGCAAAGCAATATGTGATAATACTATAGTAAACATAACCAATAGTCACTAAGTGTCACGCAAACCAATATTTGATCAAAATATTGAACACTTAATAAAAGTGTCACTTTTCATATCTCGCGGGAGAAAAATCATGGCATGTCAGACGATTCTTCGACTTTAAAATAGCAAATATCAGCCGTGAACCATTTGTCATCATACATGCGTTGTATATTTCAGTTATATGCATACAAAGTGTGCTCTTAACAAAACTTTTAACTGATAACACTGTTAAAACACTTCGTAAAACAAGTATTGCGCGACAACTTTATAAAAAAATACACCAAATGGCATGAATTTGACTTCCGGTCGAT
Unaligned ( gi|21 ): AAATACCAGCCGTGGATCCGTTGTCAGCATACATGTTTGGTTTTAATCAATTAAACATGTATAATTGTATAATTTTGTCAATACAGACAGCTACCAATATTATCTATGACATCGTAAATGTTGGAATATATTGTGCGACATGTTTTCTAACATATA
Unaligned ( gi|31 ): GACATATCTACATCCAGGGGCGTAGCTAGCTATAAGTTATGTGCAGGAACA