lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 22 1 22222 1111 11111111111111111111111111111111111111111111111111111111111111111111111111111111 1 11111 2222 1 11
lowQualScore : 5 6 5 88 5 0 33333 0000 77777777777777777777777777777777777777777777777777777777777777777777777777777777 0 44 3 77 8 3 6 33 33 6666 88888 77 2 6666 9 333 99 2 2 3 3 0 3 3 55 88 3 6
lowQualScore : . . . .. . . ..... .... ................................................................................ . .. . .. . . . .. .. .... ..... .. . .... . ... .. . . . . . . . .. .. . .
lowQualScore : 0 8 0 88 0 8 55555 6666 00000000000000000000000000000000000000000000000000000000000000000000000000000000 7 66 3 33 8 1 2 99 99 9999 66666 66 9 4444 2 888 22 9 9 1 4 3 6 6 00 22 5 0
consensus : GTAAAACAC-TTTTTATT-AGC-A-AGAACTTTATTTT---CGCTATT----ATTCNCGTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTNT-----TATCCG--A-AT--AAAA-A-T--GCATTT--CCGGCGGTTTCACTTTTCGAA-CGTC-GCGAATTCAACATTTCGCGAATAAATAAAA-T-AGGACAAATCAGAGCAAATTCGCGAA-A-TAA-AGTTCACGCGAATTTA-A-AGTGTTT--TAAAGTATATGCAAC
Reference ( gi|2 ) : GTAAAACAC-TTTTAATT-AG--A-AGACCTTTATTTT---AACTATT----ATTCACGAGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----TATCCG--A-AT--AACA-A-T--GCATTT--CCGGCAGTTGCACATTTTGAA-CATTTGCGAATTCAACATTTCGCGAATAAATCAAA-T-AGAACAAATCAGAGCAAATTCGCGAA-A-TAA-AGTTCCTGCGAATTTA-A-AGTGTTT--TAGTGTATATGTAACGCCCCTAAGAGAACTGACAAACAATAAGTTCGAAT
gi|7 : GCAAAGCAT-TTTTTATTCAC--A-AGAACCTTATTTT---TGCTATT----ATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTT-----------------AT--AAAAGA-T--GTATTT--CTGGTGGTTCCAC-TTTTCAA-AACTCGCAAATTCAACATTTCGCAAATTAATAAAA-T-AGGACAAATCAGAGCAAATTTACAAA-A-T-A-AGTTCACCCAAATTTA-G-AGTGTTT--TA
gi|8 : GTAAAACAC-TTTTTATT-AGC-A-AGATCTTTATTTTCGCAATTATT----ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTCCATAATAT--AAAA-A-T--GTATTG--CAGACAGTTTAATCTTTCGAA-TGTT-GCGATGTCACCATTTCACGATTAAATCATA-T-AGGACAAATCGGAGCAAATTCGTGAA-A-TAAGAGTTCcagtttgtgagaatacatcgagcaatctgaaaagattttgactaaaat
gi|5 : GTTAACCAC-TTCTTATC-AGC-G-AGAACTTTATTTT---CACTATT----ATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------TATCTA--A-AT--GA-A-A-TTTGCCTTG--CCGG---TTTCGCTTTTCGAA-TGTC-GCGAATTCAACATTTTCCGAGTAAAAATAA-T-AAGATAAATCAGAGCAAATTTACGAA-A-TAA-AGTTCACCCGAAAATG-A-AGTGTTT--TAAAGTATaagccagttataagtagatttgaata
gi|10 : GTGAAACAC-TATTTATA-AGC-A-AGAACTTCATTTT---CGCTATT----ATTCGCGTGTTtcggcgagatttaaagtaatattgtatttttcgtaaacaac
gi|13 : actGTAAAACACATTTTTATT-AG--A-GAAACTTTATTTT---TGCTACTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----TATCCG--A-ATTAAAAA-A-T--GTCCTT--CC------TGC-------GAA-CG-TTGCGAATTCAACATTTCGtaaactcccgcaaattcaatcaataggttcactgtcagaatatttacaatatccgattcaaaaatgcatttctggcagtttcacttgtggaacgtcgtgaattgaacattttgcaaataaatcgaagaggccaaatctgagccaattggaaaa
gi|1 : attTAAACCAC-TTTTTAAT-AG--AGAGAACTTTATTTT---CGCTATT----ATTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTA----TGT--G--A-AT--AAAA-A-T--ACATTT--CCTACGGTTTCACTTTTCGAA-AATC-GCAAATTCAACATTTTGCAAATAAATCAAA-T-ACTTCAAATCAGAGCAAATTTGCAAA-A-TAA-AGTTTATGCGAATTTA-A-AGTGTTT--TA
gi|4 : AAAACAC-TTTTTATT-AGCGA-AAAC-TTTATATT---CGCTATT----ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--------TATCCG--A-AT--AA-A-A-T--TTTTTTTTCCTACTGTTACAGTTTTCGAA-CGTC-GCGAATCAAACATTTCGCGAATAAATAAAAAG-AGAAAAAGTCAGAGCAAATCCGCAAA-A-TAA-AGCTCACGGGAATTTA-A-AGTGTTTAACAG----TATGCAACcagtaattttttttaattttaaacattttttattctgattgaaatttatacaag
gi|3 : aACAC-TTTTCATT-AGCCA-AAAATTTTATTTT---CGCTATT----ATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----TATTCG--A-AT--AAAA-G-G--ACATTT--TAGGCTGTTTCACTTTTCTAA-CGTC-GCGAATTCAACAATTCGCGAATTAATACAA-T-ATGACAAAGCAGAGCAAATTTGCGAA-A-TAA-A-----TATAACTTTATACAGTGTTT--TGATGAAAATGCAACtttatagatacttatgaggaccaattgcacagaaaatag
gi|10 : tcac----TATCCG--A-TTC-AAAA-A-T--GCATTT--CTGGCAGTTTCACTTGTGGAA-CG-TCGTGAATTGAACATTTTGCAAATAAATCGAA-G-AGGCCAAATCTGAGCCAATTtatcaaaatttaaacattgatttgataagctcaaatga
gi|11 : actgtgaaacactatttataagcaagaacttcattttcgctattattcgcgtgtttaaactcccgcaaattcaatcaataggttcactgtcagaatatttacaa----TATTCC--A-AT--AA-A-A-T--GTATTT--CCGGTGGTTTCACTTTTCGAA-CGTT-----------------ACGAATAAATAAAA-T-T-----AATCAAAGCAA-TTCGTGAA-A-TAA-AGTTCggaaaa
gi|14 : aacactgttttattagcgacaattttattttccctattatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCCA--A-AT--AAAA-A-T--GCATTT--CCAGCGGTTTCACTTTTCGAA-C-TTTGCAAATTCAACATTTTGC---------------AG-ACAAGTCAGAGAATATTCATGAA-A-TAA-AGTCCATGTGAATTTA-A-AGTGTTT--TGAAGTATGTaagcttag
gi|6 : G--A-AT--AAAA-AGT--ACATTT--CTAGCAGTTTCA-ATTTTTAATCATC-ACAAATTCAACATTTTGCGAATAAATAATA-T-AGGACAAATCAGAGCAAATTCGCAAA-A-TAA-AGTTCATGTGAATTTA-A-AGTGTTT--TAcaatagaaatatttataatatttatattcc
gi|9 : caagaacttttttttccaattatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacctgtactt--A-AT--AAAA-AAG--GCATTT--CCAGCGGTTTCACTTTTCTAA-CGTC-GTGAATTCAACATTTCATGAATAAATAAAA-T-AAGACAAATCAGAGCAATTTCGCGAA-A-TAA-GGTCCATGCGAATTTA-A-AGTGTTT--cagtaccgtagttataattatgttcacaacattggttttatgtgtgaactcggattt
gi|15 : tgttagcaagaactttttttgtattatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn--AACA-A-T--GCATTT--CT----------CGTTT-----CATTT-----TTTAACGT--CGCTAA-AAATAAAA-TCGGGACAAATCAGAGCAAATTCGCAAA-A-
gi|12 : --GTATTT--CAGGCGGTTTTACTTTTCAAA-CGTC-GCGAATTCAAGATTTCACGAATAAATAAAA-C-AGGACCTATC--AACAAAGTCGCGAA-A-TAA-AGTTCACGCGTATGTA-A-AATATTT--
gi|8 : AATT-GCGAA-AATAA-AGATCTTGCTAATAAA-A-AGTGTTT--TAattaacaatgtatgacactatccgtggtttaatactgtatttaatctaatatttagattttgtttgaaaac
gi|4 : gGCGAATA-TAA-AGTTTTCGCTAATAAA-A-AGTGTTT--Tattannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtccataatataaaaatgtattgcagacagtttaatctttcgaatgttgcgatgtcaccatttcacgattaaatcatataggacaaatcggagcaaattcgtgaaataagagttcaagccagttataagtagatttgaata
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): ATAAGACTGGGTACTGTATACTACATATTAATGCAATAATTCCGGCTTTAATTGA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 4 4 55 4 666 99999 888888888888888888888888888888888888888888888888888888888888888888888888888888888 44 3 66 777 2 2 1 0 2 222 3 0 3 3 3 55 66
lowQualScore : . . .. . ... ..... ................................................................................. .. . .. ... . . . . . ... . . . . . .. ..
lowQualScore : 0 0 00 3 444 11111 444444444444444444444444444444444444444444444444444444444444444444444444444444444 22 1 88 999 7 7 5 9 7 999 3 8 6 6 6 00 11
consensus : GTAAAACAC-T-TTTTATTAGC-GAGAACTTTATTTTCGC---TATT-----ATTCGCGNGTTATTCGCGTGTTTAAACTCCCGCAAATTCAATCAATAGGTTCACTGTCAGAATATTTACAANNCTTNT-----TATCCG--A-AT--AAAA-A-T-GCATTT-CCGGCGGTTTCACTTTTCGAACGTC-GCGAATTCAACATTTCGCGAATAAATAAAA-T-AGGACAAATCAGAGCAAATTCGCGAAATAA-AGTTCACGCGAATTTA-A-AGT-GTT--TTAN-AGTATATGCAAC
Reference ( family-34 ) : GTAAAACAC-T-TTTTATTAGC-AAGAACTTTATTTTCGC---TATT-----ATTCNCGTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTNT-----TATCCG--A-AT--AAAA-A-T-GCATTT-CCGGCGGTTTCACTTTTCGAACGTC-GCGAATTCAACATTTCGCGAATAAATAAAA-T-AGGACAAATCAGAGCAAATTCGCGAAATAA-AGTTCACGCGAATTTA-A-AGT-GTT--TTAA-AGTATATGCAAC
gi|1 : TAAACCAC-T-TTTTAATAGA-GAGAACTTTATTTTCGC---TATT-----ATTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT------ATGTG--A-AT--AAAA-A-T-ACATTT-CCTACGGTTTCACTTTTCGAAAATC-GCAAATTCAACATTTTGCAAATAAATCAAA-T-ACTTCAAATCAGAGCAAATTTGCAAAATAA-AGTTTATGCGAATTTA-A-AGT-GTT--TTAC-AGTA
gi|10 : GTGAAACAC-T-ATTTATAAGC-AAGAACT------TC------ATT------TTCGC-TATTATTCGCGTGTTTAAACTCCCGCAAATTCAATCAATAGGTTCACTGTCAGAATATTTACAA------------TATCCG--A-TTC-AAAA-A-T-GCATTT-CTGGCAGTTTCACTTGTGGAACGTC-GTGAATTGAACATTTTGCAAATAAATCGAA-G-AGGCCAAATCTGAGCCAATTattttttttaattttaaacattttttattctgattgaaatttatacaag
gi|11 : actAACAC-TGTTTTATTAGC-GACAATTTTATTTTCCC------T-----ATT------------ATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----TATTCC--A-AT--AAAA---T-GTATTT-CCGGTGGTTTCACTTTTCGAACG-----------------TTACGAATAAATAAAA-T------TAATCAAAGC-AATTCGTGAAATAA-AGTTCAAGCggaaaa
gi|12 : -GTATTT-CAGGCGGTTTTACTTTTCAAACGTC-GCGAATTCAAGATTTCACGAATAAATAAAA-C-AGGACCTATC--AACAAAGTCGCGAAATAA-AGTTCACGCGTATGTA-A-AAT-ATTTATTAACAATGTATGttag
gi|13 : GTAAAACACAT-TTTTATTAG--AGAAACTTTATTTTTGC---TACTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----TATCCG--A-ATTAAAAA-A-T-GTCCTT-CCTG-------------CGAACGTT-GCGAATTCAACATTTCGacactatccgtggtttaatactgtatttaatctaatatttagattttgtttgaaaac
gi|14 : attCCA--A-AT--AAAA-A-T-GCATTT-CCAGCGGTTTCACTTTTCGAACTTT-GCAAATTCAACATTTTGC----------------AGACAAGTCAGAGAATATTCATGAAATAA-AGTCCATGTGAATTTA-A-AGT-GTT--TTGA-AGTATGT-CAA
gi|15 : --AACA-A-T-GCATTT-CT--CG-TTTCATTTTTT-AACGTC-GCTAA-----------------AAATAAAA-TCGGGACAAATCAGAGCAAATTCGCAAAAtagaaatatttataatatttatattcc
gi|2 : GTAAAACAC-T-TTTAATTAG--AAGACCTTTATTTTAAC---TATT-----ATTCACGAGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----TATCCG--A-AT--AACA-A-T-GCATTT-CCGGCAGTTGCACATTTTGAACATTTGCGAATTCAACATTTCGCGAATAAATCAAA-T-AGAACAAATCAGAGCAAATTCGCGAAATAA-AGTTCCTGCGAATTTA-A-AGT-GTT--TTAG-TGTATATGTAAC
gi|3 : ACAC-T-TTTCATTAGCCAAAAATTTTATTTTCGC---TATT-----ATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----TATTCG--A-AT--AAAA-G-G-ACATTT-TAGGCTGTTTCACTTTTCTAACGTC-GCGAATTCAACAATTCGCGAATTAATACAA-T-ATGACAAAGCAGAGCAAATTTGCGAAATAA-ATATAAC-----TTTATACAGT-GTT--TTGA-TGAAAATGCAACgcccctaagagaactgacaaacaataagttcgaat
gi|4 : tcacAAAACAC-T-TTTTATTAGC-GAAAACTTTATATTCGC---TATT-----ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT--------ATCCG--A-AT--AAAA-T-T-TTTTTTTCCTACTGTTACAGTTTTCGAACGTC-GCGAATCAAACATTTCGCGAATAAATAAAAAG-AGAAAAAGTCAGAGCAAATCCGCAAAATAA-AGCTCACGGGAATTTA-A-AGT-GTT--TAAC-AG--TATGCAACtatcaaaatttaaacattgatttgataagctcaaatga
gi|5 : aGTTAACCAC-T-TCTTATCAGC-GAGAACTTTATTTTCAC---TATT-----ATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT------ATCTA--A-AT--GAAA-T-TTGCCTTG-CCGG---TTTCGCTTTTCGAATGTC-GCGAATTCAACATTTTCCGAGTAAAAATAA-T-AAGATAAATCAGAGCAAATTTACGAAATAA-AGTTCACCCGAAAATG-A-AGT-GTT--TTAA-AGTATtttatagatacttatgaggaccaattgcacagaaaatag
gi|6 : C-AAGAACTTTTTTTTC-C---AATT-----ATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACCTGTACTTG--A-AT--AAAA-AGT-ACATTT-CTAGCAGTTTCAATTTTTAATCATC-ACAAATTCAACATTTTGCGAATAAATAATA-T-AGGACAAATCAGAGCAAATTCGCAAAATAA-AGTTCATGTGAATTTA-A-AGT-GTT--TTAC-AGTAtcggcgagatttaaagtaatattgtatttttcgtaaacaac
gi|7 : GCAAAGCAT-T-TTTTATTCAC-AAGAACCTTATTTTTGC---TATT-----ATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTT-----------------AT--AAAAGA-T-GTATTT-CTGGTGGTTCCACTTTTCAAAACTC-GCAAATTCAACATTTCGCAAATTAATAAAA-T-AGGACAAATCAGAGCAAATTTACAAAAT-A-AGTTCACCCAAATTTA-G-AGT-GTT--TTAC-AGTTTGTGccgtagttataattatgttcacaacattggttttatgtgtgaactcggattt
gi|8 : GTAAAACAC-T-TTTTATTAGC-AAGATCTTTATTTTCGCAATTATT-----ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTCCATAATAT--AAAA-A-T-GTATTG-CAGACAGTTTAATCTTTCGAATGTT-GCGATGTCACCATTTCACGATTAAATCATA-T-AGGACAAATCGGAGCAAATTCGTGAAATAAGAGTTCAAGCCAGTTAT-A-AGTAGAT--TTGA-agaatacatcgagcaatctgaaaagattttgactaaaat
gi|9 : --A-AT--AAAA-AAG-GCATTT-CCAGCGGTTTCACTTTTCTAACGTC-GTGAATTCAACATTTCATGAATAAATAAAA-T-AAGACAAATCAGAGCAATTTCGCGAAATAA-GGTCCATGCGAATTTA-A-AGT-GTT--Tta
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): ATAAGACTGGGTACTGTATACTACATATTAATGCAATAATTCCGGCTTTAATTGA
Alignments
lowQualScore : 8888888888888888888888888888888888888888888888888888888888888888888888888888888888
lowQualScore : 4 4 3 666 99999 6666666666666666666666666666666666666666666666666666666666666666666666666666666666 44 3 66 777 2 2 1 0 2 222 3 0 3 3 4 66 1
lowQualScore : . . . ... ..... .................................................................................. .. . .. ... . . . . . ... . . . . . .. .
lowQualScore : 0 0 6 444 11111 6666666666666666666666666666666666666666666666666666666666666666666666666666666666 22 1 88 999 7 7 5 9 7 999 3 8 6 6 0 11 0
consensus : GTAAAACAC-T-TTTTATTAGC-GAGAACTTTATTTTCGC---TATT-----ATTCACGAGTTATTCGCGTGTTTAAACTCCCGCAAATTCAATCAATAGGTTCACTGTCAGAATATTTACAANNCTT-T-----TATCCG--A-AT--AAAA-A-T-GCATTT-CCGGCGGTTTCACTTTTCGAACGTC-GCGAATTCAACATTTCGCGAATAAATAAAA-T-AGGACAAATCAGAGCAAATTCGCGAAATAA-AGTTCACGCGAATTTA-A-AGTGTTT-T--ACAGTATATGCAAC
Reference ( family-34 ) : GTAAAACAC-T-TTTTATTAGC-GAGAACTTTATTTTCGC---TATT-----ATTCGCGNGTTATTCGCGTGTTTAAACTCCCGCAAATTCAATCAATAGGTTCACTGTCAGAATATTTACAANNCTTNT-----TATCCG--A-AT--AAAA-A-T-GCATTT-CCGGCGGTTTCACTTTTCGAACGTC-GCGAATTCAACATTTCGCGAATAAATAAAA-T-AGGACAAATCAGAGCAAATTCGCGAAATAA-AGTTCACGCGAATTTA-A-AGTGTTT-T--ANAGTATATGCAAC
gi|1 : TAAACCAC-T-TTTTAATAGA-GAGAACTTTATTTTCGC---TATT-----ATTT-TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----TATGTG--A-AT--AAAA-A-T-ACATTT-CCTACGGTTTCACTTTTCGAAAATC-GCAAATTCAACATTTTGCAAATAAATCAAA-T-ACTTCAAATCAGAGCAAATTTGCAAAATAA-AGTTTATGCGAATTTA-A-AGTGTTT-T--ACAGTA
gi|10 : GTGAAACAC-T-ATTTATAAGC-AAGAACTTCATTTTCGC---TATT-----AT-----------TCGCGTGTTTAAACTCCCGCAAATTCAATCAATAGGTTCACTGTCAGAATATTTACAA------------TATCCG--A-TTC-AAAA-A-T-GCATTT-CTGGCAGTTTCACTTGTGGAACGTC-GTGAATTGAACATTTTGCAAATAAATCGAA-G-AGGCCAAATCTGAGCCAATTattttttttaattttaaacattttttattctgattgaaatttatacaag
gi|11 : actAACAC-TGTTTTATTAGC-GACAATTTTATTTTCCC---TAT----------------TATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT---------ATTCC--A-AT--AAAA---T-GTATTT-CCGGTGGTTTCACTTTTCGAACG-----------------TTACGAATAAATAAAA-T------TAATCAAAGC-AATTCGTGAAATAA-AGTTCAAGCggaaaa
gi|12 : -GTATTT-CAGGCGGTTTTACTTTTCAAACGTC-GCGAATTCAAGATTTCACGAATAAATAAAA-C-AGGACCTATC--AACAAAGTCGCGAAATAA-AGTTCACGCGTATGTA-A-AATATTTATTAACAATGTATGttag
gi|13 : GTAAAACACAT-TTTTATTAGA-GA-AACTTTATTTTTGC---TACTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----TATCCG--A-ATTAAAAA-A-T-GTCCTT-CCTG-------------CGAACGTT-GCGAATTCAACATTTCGacactatccgtggtttaatactgtatttaatctaatatttagattttgtttgaaaac
gi|14 : attCCA--A-AT--AAAA-A-T-GCATTT-CCAGCGGTTTCACTTTTCGAACTTT-GCAAATTCAACATTTTGC----------------AGACAAGTCAGAGAATATTCATGAAATAA-AGTCCATGTGAATTTA-A-AGTGTTT-T--GAAGTATGT-CAA
gi|15 : --AACA-A-T-GCATTT-CT--CG-TTTCATTTTTT-AACGTC-GCTAA-----------------AAATAAAA-TCGGGACAAATCAGAGCAAATTCGCAAAAtagaaatatttataatatttatattcc
gi|2 : GTAAAACAC-T-TTTAATTAG--AAGACCTTTATTTTAAC---TATT-----ATTCACGAGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----TATCCG--A-AT--AACA-A-T-GCATTT-CCGGCAGTTGCACATTTTGAACATTTGCGAATTCAACATTTCGCGAATAAATCAAA-T-AGAACAAATCAGAGCAAATTCGCGAAATAA-AGTTCCTGCGAATTTA-A-AGTGTTT-T--AGTGTATATGTAAC
gi|3 : ACAC-T-TTTCATTAGCCAAAAATTTTATTTTCGC---TATT-----ATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----TATTCG--A-AT--AAAA-G-G-ACATTT-TAGGCTGTTTCACTTTTCTAACGTC-GCGAATTCAACAATTCGCGAATTAATACAA-T-ATGACAAAGCAGAGCAAATTTGCGAAATAA-ATATAAC-----TTTATACAGTGTTT-T--GATGAAAATGCAACgcccctaagagaactgacaaacaataagttcgaat
gi|4 : tcacAAAACAC-T-TTTTATTAGC-GAAAACTTTATATTCGC---TATT-----ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT--------ATCCG--A-AT--AAAA-T-T-TTTTTTTCCTACTGTTACAGTTTTCGAACGTC-GCGAATCAAACATTTCGCGAATAAATAAAAAG-AGAAAAAGTCAGAGCAAATCCGCAAAATAA-AGCTCACGGGAATTTA-A-AGTGTTT-A--ACAG--TATGCAACtatcaaaatttaaacattgatttgataagctcaaatga
gi|5 : aGTTAACCAC-T-TCTTATCAGC-GAGAACTTTATTTTCAC---TATT-----ATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT------ATCTA--A-AT--GAAA-T-TTGCCTTG-CCGG---TTTCGCTTTTCGAATGTC-GCGAATTCAACATTTTCCGAGTAAAAATAA-T-AAGATAAATCAGAGCAAATTTACGAAATAA-AGTTCACCCGAAAATG-A-AGTGTTT-T--AAAGTATtttatagatacttatgaggaccaattgcacagaaaatag
gi|6 : C-AAGAACTTTTTTTTC-C---AATT-----ATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACCTGTACTTG--A-AT--AAAA-AGT-ACATTT-CTAGCAGTTTCAATTTTTAATCATC-ACAAATTCAACATTTTGCGAATAAATAATA-T-AGGACAAATCAGAGCAAATTCGCAAAATAA-AGTTCATGTGAATTTA-A-AGTGTTT-T--ACAGTAtcggcgagatttaaagtaatattgtatttttcgtaaacaac
gi|7 : GCAAAGCAT-T-TTTTATTCAC-AAGAACCTTATTTTTGC---TATT-----ATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTT-----------------AT--AAAAGA-T-GTATTT-CTGGTGGTTCCACTTTTCAAAACTC-GCAAATTCAACATTTCGCAAATTAATAAAA-T-AGGACAAATCAGAGCAAATTTACAAAAT-A-AGTTCACCCAAATTTA-G-AGTGTTT-T--ACAGTTTGTGccgtagttataattatgttcacaacattggttttatgtgtgaactcggattt
gi|8 : GTAAAACAC-T-TTTTATTAGC-AAGATCTTTATTTTCGCAATTATT-----ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTCCATAATAT--AAAA-A-T-GTATTG-CAGACAGTTTAATCTTTCGAATGTT-GCGATGTCACCATTTCACGATTAAATCATA-T-AGGACAAATCGGAGCAAATTCGTGAAATAAGAGTTCAAGCCAGTTAT-A-AGTagaatacatcgagcaatctgaaaagattttgactaaaat
gi|9 : --A-AT--AAAA-AAG-GCATTT-CCAGCGGTTTCACTTTTCTAACGTC-GTGAATTCAACATTTCATGAATAAATAAAA-T-AAGACAAATCAGAGCAATTTCGCGAAATAA-GGTCCATGCGAATTTA-A-AGTGTTT-agatttgaata
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): ATAAGACTGGGTACTGTATACTACATATTAATGCAATAATTCCGGCTTTAATTGA
Alignments
lowQualScore : 888888888888888888888888888888888888888888888888888888888888888888888888888888888 111111
lowQualScore : 4 4 3 555 999999 000000000000000000000000000000000000000000000000000000000000000000000000000000000 333333 3 66 555 2 2 1 0 2 222 3 0 3 3 4 66 1
lowQualScore : . . . ... ...... ................................................................................. ...... . .. ... . . . . . ... . . . . . .. .
lowQualScore : 0 0 3 888 666666 111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111 1 88 000 7 7 5 9 7 999 3 8 6 6 0 11 1
consensus : GTAAAACAC-T-TTTTATTAGC-GAGAACTTTATTTTCGC---TATT------ATTCNCGAGTTATNCGCGNGNNNNNNCNCCCGCNNNNNCNNNCNNNNGGNNCNCNGNCNGNNNNNNNNCNAANCTT-------TATCCG------A-AT--AAAA-A-T-GCATTT-CCGGCGGTTTCACTTTTCGAACGTC-GCGAATTCAACATTTCGCGAATAAATAAAA-T-AGGACAAATCAGAGCAAATTCGCGAAATAA-AGTTCACGCGAATTTA-A-AGTGTTT-T--ACAGTATATGCAAC
Reference ( family-34 ) : GTAAAACAC-T-TTTTATTAGC-GAGAACTTTATTTTCGC---TATT------ATTCACGAGTTATTCGCGTGTTTAAACTCCCGCAAATTCAATCAATAGGTTCACTGTCAGAATATTTACAANNCTTT------TATCCG------A-AT--AAAA-A-T-GCATTT-CCGGCGGTTTCACTTTTCGAACGTC-GCGAATTCAACATTTCGCGAATAAATAAAA-T-AGGACAAATCAGAGCAAATTCGCGAAATAA-AGTTCACGCGAATTTA-A-AGTGTTT-T--ACAGTATATGCAAC
gi|1 : TAAACCAC-T-TTTTAATAGA-GAGAACTTTATTTTCGC---TATT------ATTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------TATGTG------A-AT--AAAA-A-T-ACATTT-CCTACGGTTTCACTTTTCGAAAATC-GCAAATTCAACATTTTGCAAATAAATCAAA-T-ACTTCAAATCAGAGCAAATTTGCAAAATAA-AGTTTATGCGAATTTA-A-AGTGTTT-T--ACAGTA
gi|10 : GTGAAACAC-T-ATTTATAAGC-AAGAACTTCATTTTCGC---TATT------AT-----------TCGCGTGTTTAAACTCCCGCAAATTCAATCAATAGGTTCACTGTCAGAATATTTACAA------------TATCCG------A-TTC-AAAA-A-T-GCATTT-CTGGCAGTTTCACTTGTGGAACGTC-GTGAATTGAACATTTTGCAAATAAATCGAA-G-AGGCCAAATCTGAGCCAATTattttttttaattttaaacattttttattctgattgaaatttatacaag
gi|11 : actAACAC-TGTTTTATTAGC-GACAATTTTATTTTCCC---TAT-----------------TATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT---------ATTCC------A-AT--AAAA---T-GTATTT-CCGGTGGTTTCACTTTTCGAACG-----------------TTACGAATAAATAAAA-T------TAATCAAAGC-AATTCGTGAAATAA-AGTTCAAGCggaaaa
gi|12 : -GTATTT-CAGGCGGTTTTACTTTTCAAACGTC-GCGAATTCAAGATTTCACGAATAAATAAAA-C-AGGACCTATC--AACAAAGTCGCGAAATAA-AGTTCACGCGTATGTA-A-AATATTTATTAACAATGTATGttag
gi|13 : GTAAAACACAT-TTTTATTAGA-GA-AACTTTATTTTTGC---TACTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------TATCCG------A-ATTAAAAA-A-T-GTCCTT-CCTG-------------CGAACGTT-GCGAATTCAACATTTCGacactatccgtggtttaatactgtatttaatctaatatttagattttgtttgaaaac
gi|14 : attCCA------A-AT--AAAA-A-T-GCATTT-CCAGCGGTTTCACTTTTCGAACTTT-GCAAATTCAACATTTTGC----------------AGACAAGTCAGAGAATATTCATGAAATAA-AGTCCATGTGAATTTA-A-AGTGTTT-T--GAAGTATGT-CAA
gi|15 : --AACA-A-T-GCATTT-CT--CG-TTTCATTTTTT-AACGTC-GCTAA-----------------AAATAAAA-TCGGGACAAATCAGAGCAAATTCGCAAAAtagaaatatttataatatttatattcc
gi|2 : GTAAAACAC-T-TTTAATTAG--AAGACCTTTATTTTAAC---TATT------ATTCACGAGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----TATCCG------A-AT--AACA-A-T-GCATTT-CCGGCAGTTGCACATTTTGAACATTTGCGAATTCAACATTTCGCGAATAAATCAAA-T-AGAACAAATCAGAGCAAATTCGCGAAATAA-AGTTCCTGCGAATTTA-A-AGTGTTT-T--AGTGTATATGTAAC
gi|3 : ACAC-T-TTTCATTAGCCAAAAATTTTATTTTCGC---TATT------ATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----TATTCG------A-AT--AAAA-G-G-ACATTT-TAGGCTGTTTCACTTTTCTAACGTC-GCGAATTCAACAATTCGCGAATTAATACAA-T-ATGACAAAGCAGAGCAAATTTGCGAAATAA-ATATAAC-----TTTATACAGTGTTT-T--GATGAAAATGCAACgcccctaagagaactgacaaacaataagttcgaat
gi|4 : tcacAAAACAC-T-TTTTATTAGC-GAAAACTTTATATTCGC---TATT------ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT--------ATCCG------A-AT--AAAA-T-T-TTTTTTTCCTACTGTTACAGTTTTCGAACGTC-GCGAATCAAACATTTCGCGAATAAATAAAAAG-AGAAAAAGTCAGAGCAAATCCGCAAAATAA-AGCTCACGGGAATTTA-A-AGTGTTT-A--ACAG--TATGCAACtatcaaaatttaaacattgatttgataagctcaaatga
gi|5 : aGTTAACCAC-T-TCTTATCAGC-GAGAACTTTATTTTCAC---TATT------ATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------TATCTA------A-AT--GAAA-T-TTGCCTTG-CCGG---TTTCGCTTTTCGAATGTC-GCGAATTCAACATTTTCCGAGTAAAAATAA-T-AAGATAAATCAGAGCAAATTTACGAAATAA-AGTTCACCCGAAAATG-A-AGTGTTT-T--AAAGTATtttatagatacttatgaggaccaattgcacagaaaatag
gi|6 : C-AAGAACTTTTTTTTC-C---AATT------ATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------TACCTGTACTTGA-AT--AAAA-AGT-ACATTT-CTAGCAGTTTCAATTTTTAATCATC-ACAAATTCAACATTTTGCGAATAAATAATA-T-AGGACAAATCAGAGCAAATTCGCAAAATAA-AGTTCATGTGAATTTA-A-AGTGTTT-T--ACAGTAtcggcgagatttaaagtaatattgtatttttcgtaaacaac
gi|7 : GCAAAGCAT-T-TTTTATTCAC-AAGAACCTTATTTTTGC---TATT------ATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTT---------------------AT--AAAAGA-T-GTATTT-CTGGTGGTTCCACTTTTCAAAACTC-GCAAATTCAACATTTCGCAAATTAATAAAA-T-AGGACAAATCAGAGCAAATTTACAAAAT-A-AGTTCACCCAAATTTA-G-AGTGTTT-T--ACAGTTTGTGccgtagttataattatgttcacaacattggttttatgtgtgaactcggattt
gi|8 : GTAAAACAC-T-TTTTATTAGC-AAGATCTTTATTTTCGCAATTATT------ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTCCATA----ATAT--AAAA-A-T-GTATTG-CAGACAGTTTAATCTTTCGAATGTT-GCGATGTCACCATTTCACGATTAAATCATA-T-AGGACAAATCGGAGCAAATTCGTGAAATAAGAGTTCAAGCCAGTTAT-A-AGTagaatacatcgagcaatctgaaaagattttgactaaaat
gi|9 : TGTTAGC-AAGAACTTT--TTTTG----TATT------ATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAA-----------TA----------------AAAA-A-G-GCATTT-CCAGCGGTTTCACTTTTCTAACGTC-GTGAATTCAACATTTCATGAATAAATAAAA-T-AAGACAAATCAGAGCAATTTCGCGAAATAA-GGTCCATGCGAATTTA-A-AGTGTTT-agatttgaata
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): ATAAGACTGGGTACTGTATACTACATATTAATGCAATAATTCCGGCTTTAATTGA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 4 4 3 666 1111111 5555555555555555555555555555555555555555555555555555555555555555555555555555555 44 3 66 555 2 2 1 0 2 222 3 0 3 3 4 66 1
lowQualScore : . . . ... ....... ............................................................................... .. . .. ... . . . . . ... . . . . . .. .
lowQualScore : 0 0 6 444 8888888 9999999999999999999999999999999999999999999999999999999999999999999999999999999 22 1 88 000 7 7 5 9 7 999 3 8 6 6 0 11 1
consensus : GTAAAACAC-T-TTTTATTAGC-GAGAACTTTATTTTCGC---TATT-------ATTCNCGAGTTNNNNGCGTGTTTAAACTCCCGCAAATTCAATCAATAGGTTCACTGTCAGAATATTTACAAACCTT-------TATCCG--A-AT--AAAA-A-T-GCATTT-CCGGCGGTTTCACTTTTCGAACGTC-GCGAATTCAACATTTCGCGAATAAATAAAA-T-AGGACAAATCAGAGCAAATTCGCGAAATAA-AGTTCACGCGAATTTA-A-AGTGTTT-T--ACAGTATATGCAAC
Reference ( family-34 ) : GTAAAACAC-T-TTTTATTAGC-GAGAACTTTATTTTCGC---TATT-------ATTCNCGAGTTATNCGCGNGNNNNNNCNCCCGCNNNNNCNNNCNNNNGGNNCNCNGNCNGNNNNNNNNCNAANCTT-------TATCCG--A-AT--AAAA-A-T-GCATTT-CCGGCGGTTTCACTTTTCGAACGTC-GCGAATTCAACATTTCGCGAATAAATAAAA-T-AGGACAAATCAGAGCAAATTCGCGAAATAA-AGTTCACGCGAATTTA-A-AGTGTTT-T--ACAGTATATGCAAC
gi|1 : TAAACCAC-T-TTTTAATAGA-GAGAACTTTATTTTCGC---TATT-------ATTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------TATGTG--A-AT--AAAA-A-T-ACATTT-CCTACGGTTTCACTTTTCGAAAATC-GCAAATTCAACATTTTGCAAATAAATCAAA-T-ACTTCAAATCAGAGCAAATTTGCAAAATAA-AGTTTATGCGAATTTA-A-AGTGTTT-T--ACAGTA
gi|10 : GTGAAACAC-T-ATTTATAAGC-AAGAACTTCATTTTCGC---TATT-------ATTC-----------GCGTGTTTAAACTCCCGCAAATTCAATCAATAGGTTCACTGTCAGAATATTTACAA------------TATCCG--A-TTC-AAAA-A-T-GCATTT-CTGGCAGTTTCACTTGTGGAACGTC-GTGAATTGAACATTTTGCAAATAAATCGAA-G-AGGCCAAATCTGAGCCAATTattttttttaattttaaacattttttattctgattgaaatttatacaag
gi|11 : actAACAC-TGTTTTATTAGC-GACAATTTTATTTTCCC---TATT-------ATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--------------------TATTCC--A-AT--AAAA---T-GTATTT-CCGGTGGTTTCACTTTTCGAACG-----------------TTACGAATAAATAAAA-T------TAATCAAAGC-AATTCGTGAAATAA-AGTTCAAGCggaaaa
gi|12 : -GTATTT-CAGGCGGTTTTACTTTTCAAACGTC-GCGAATTCAAGATTTCACGAATAAATAAAA-C-AGGACCTATC--AACAAAGTCGCGAAATAA-AGTTCACGCGTATGTA-A-AATATTTATTAACAATGTATGttag
gi|13 : GTAAAACACAT-TTTTATTAGA-GA-AACTTTATTTTTGC---TACTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------TATCCG--A-ATTAAAAA-A-T-GTCCTT-CCTG-------------CGAACGTT-GCGAATTCAACATTTCGacactatccgtggtttaatactgtatttaatctaatatttagattttgtttgaaaac
gi|14 : attCCA--A-AT--AAAA-A-T-GCATTT-CCAGCGGTTTCACTTTTCGAACTTT-GCAAATTCAACATTTTGC----------------AGACAAGTCAGAGAATATTCATGAAATAA-AGTCCATGTGAATTTA-A-AGTGTTT-T--GAAGTATGT-CAA
gi|15 : --AACA-A-T-GCATTT-CT--CG-TTTCATTTTTT-AACGTC-GCTAA-----------------AAATAAAA-TCGGGACAAATCAGAGCAAATTCGCAAAAtagaaatatttataatatttatattcc
gi|2 : GTAAAACAC-T-TTTAATTAG--AAGACCTTTATTTTAAC---TATT-------ATTCACGAGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----TATCCG--A-AT--AACA-A-T-GCATTT-CCGGCAGTTGCACATTTTGAACATTTGCGAATTCAACATTTCGCGAATAAATCAAA-T-AGAACAAATCAGAGCAAATTCGCGAAATAA-AGTTCCTGCGAATTTA-A-AGTGTTT-T--AGTGTATATGTAAC
gi|3 : ACAC-T-TTTCATTAGCCAAAAATTTTATTTTCGC---TATT-------ATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----TATTCG--A-AT--AAAA-G-G-ACATTT-TAGGCTGTTTCACTTTTCTAACGTC-GCGAATTCAACAATTCGCGAATTAATACAA-T-ATGACAAAGCAGAGCAAATTTGCGAAATAA-ATATAAC-----TTTATACAGTGTTT-T--GATGAAAATGCAACgcccctaagagaactgacaaacaataagttcgaat
gi|4 : tcacAAAACAC-T-TTTTATTAGC-GAAAACTTTATATTCGC---TATT-------ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT--------ATCCG--A-AT--AAAA-T-T-TTTTTTTCCTACTGTTACAGTTTTCGAACGTC-GCGAATCAAACATTTCGCGAATAAATAAAAAG-AGAAAAAGTCAGAGCAAATCCGCAAAATAA-AGCTCACGGGAATTTA-A-AGTGTTT-A--ACAG--TATGCAACtatcaaaatttaaacattgatttgataagctcaaatga
gi|5 : aGTTAACCAC-T-TCTTATCAGC-GAGAACTTTATTTTCAC---TATT-------ATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------TATCTA--A-AT--GAAA-T-TTGCCTTG-CCGG---TTTCGCTTTTCGAATGTC-GCGAATTCAACATTTTCCGAGTAAAAATAA-T-AAGATAAATCAGAGCAAATTTACGAAATAA-AGTTCACCCGAAAATG-A-AGTGTTT-T--AAAGTATtttatagatacttatgaggaccaattgcacagaaaatag
gi|6 : ACCTG-------TACTTG--A-AT--AAAA-AGT-ACATTT-CTAGCAGTTTCAATTTTTAATCATC-ACAAATTCAACATTTTGCGAATAAATAATA-T-AGGACAAATCAGAGCAAATTCGCAAAATAA-AGTTCATGTGAATTTA-A-AGTGTTT-T--ACAGTAtcggcgagatttaaagtaatattgtatttttcgtaaacaac
gi|7 : caagaacttttttttccaattatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntGCAAAGCAT-T-TTTTATTCAC-AAGAACCTTATTTTTGC---TATT-------ATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTT-----------------AT--AAAAGA-T-GTATTT-CTGGTGGTTCCACTTTTCAAAACTC-GCAAATTCAACATTTCGCAAATTAATAAAA-T-AGGACAAATCAGAGCAAATTTACAAAAT-A-AGTTCACCCAAATTTA-G-AGTGTTT-T--ACAGTTTGTGccgtagttataattatgttcacaacattggttttatgtgtgaactcggattt
gi|8 : GTAAAACAC-T-TTTTATTAGC-AAGATCTTTATTTTCGCAATTATT-------ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTCCATAATAT--AAAA-A-T-GTATTG-CAGACAGTTTAATCTTTCGAATGTT-GCGATGTCACCATTTCACGATTAAATCATA-T-AGGACAAATCGGAGCAAATTCGTGAAATAAGAGTTCAAGCCAGTTAT-A-AGTagaatacatcgagcaatctgaaaagattttgactaaaat
gi|9 : TGTTAGC-AAGAACTTT--TTTTG----TATT-------ATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAA-----------TA------------AAAA-A-G-GCATTT-CCAGCGGTTTCACTTTTCTAACGTC-GTGAATTCAACATTTCATGAATAAATAAAA-T-AAGACAAATCAGAGCAATTTCGCGAAATAA-GGTCCATGCGAATTTA-A-AGTGTTT-agatttgaata
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): ATAAGACTGGGTACTGTATACTACATATTAATGCAATAATTCCGGCTTTAATTGA
Alignments
lowQualScore : 1111111 8888888888888888888888888888888888888888888888888888888888888888888888888888888
lowQualScore : 4 4 3 666 1111111 3333333333333333333333333333333333333333333333333333333333333333333333333333333 44 3 66 555 2 2 1 0 2 222 3 0 3 3 4 66 1
lowQualScore : . . . ... ....... ............................................................................... .. . .. ... . . . . . ... . . . . . .. .
lowQualScore : 0 0 6 444 8888888 2222222222222222222222222222222222222222222222222222222222222222222222222222222 22 1 88 000 7 7 5 9 7 999 3 8 6 6 0 11 1
consensus : GTAAAACAC-T-TTTTATTAGC-GAGAACTTTATTTTCGC---TATT-------ATTCNCGAGTTNNNNGCGTGTTTAAACTCCCGCAAATTCAATCAATAGGTTCACTGTCAGAATATTTACAAACCTT-------TATCCG--A-AT--AAAA-A-T-GCATTT-CCGGCGGTTTCACTTTTCGAACGTC-GCGAATTCAACATTTCGCGAATAAATAAAA-T-AGGACAAATCAGAGCAAATTCGCGAAATAA-AGTTCACGCGAATTTA-A-AGTGTTT-T--ACAGTATATGCAAC
Reference ( family-34 ) : GTAAAACAC-T-TTTTATTAGC-GAGAACTTTATTTTCGC---TATT-------ATTCNCGAGTTNNNNGCGTGTTTAAACTCCCGCAAATTCAATCAATAGGTTCACTGTCAGAATATTTACAAACCTT-------TATCCG--A-AT--AAAA-A-T-GCATTT-CCGGCGGTTTCACTTTTCGAACGTC-GCGAATTCAACATTTCGCGAATAAATAAAA-T-AGGACAAATCAGAGCAAATTCGCGAAATAA-AGTTCACGCGAATTTA-A-AGTGTTT-T--ACAGTATATGCAAC
gi|1 : TAAACCAC-T-TTTTAATAGA-GAGAACTTTATTTTCGC---TATT-------ATTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------TATGTG--A-AT--AAAA-A-T-ACATTT-CCTACGGTTTCACTTTTCGAAAATC-GCAAATTCAACATTTTGCAAATAAATCAAA-T-ACTTCAAATCAGAGCAAATTTGCAAAATAA-AGTTTATGCGAATTTA-A-AGTGTTT-T--ACAGTA
gi|10 : GTGAAACAC-T-ATTTATAAGC-AAGAACTTCATTTTCGC---TATT-------ATTC-----------GCGTGTTTAAACTCCCGCAAATTCAATCAATAGGTTCACTGTCAGAATATTTACAA------------TATCCG--A-TTC-AAAA-A-T-GCATTT-CTGGCAGTTTCACTTGTGGAACGTC-GTGAATTGAACATTTTGCAAATAAATCGAA-G-AGGCCAAATCTGAGCCAATTattttttttaattttaaacattttttattctgattgaaatttatacaag
gi|11 : actAACAC-TGTTTTATTAGC-GACAATTTTATTTTCCC---TATT-------ATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--------------------TATTCC--A-AT--AAAA---T-GTATTT-CCGGTGGTTTCACTTTTCGAACG-----------------TTACGAATAAATAAAA-T------TAATCAAAGC-AATTCGTGAAATAA-AGTTCAAGCggaaaa
gi|12 : -GTATTT-CAGGCGGTTTTACTTTTCAAACGTC-GCGAATTCAAGATTTCACGAATAAATAAAA-C-AGGACCTATC--AACAAAGTCGCGAAATAA-AGTTCACGCGTATGTA-A-AATATTTATTAACAATGTATGttag
gi|13 : GTAAAACACAT-TTTTATTAGA-GA-AACTTTATTTTTGC---TACTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------TATCCG--A-ATTAAAAA-A-T-GTCCTT-CCTG-------------CGAACGTT-GCGAATTCAACATTTCGacactatccgtggtttaatactgtatttaatctaatatttagattttgtttgaaaac
gi|14 : attCCA--A-AT--AAAA-A-T-GCATTT-CCAGCGGTTTCACTTTTCGAACTTT-GCAAATTCAACATTTTGC----------------AGACAAGTCAGAGAATATTCATGAAATAA-AGTCCATGTGAATTTA-A-AGTGTTT-T--GAAGTATGT-CAA
gi|15 : --AACA-A-T-GCATTT-CT--CG-TTTCATTTTTT-AACGTC-GCTAA-----------------AAATAAAA-TCGGGACAAATCAGAGCAAATTCGCAAAAtagaaatatttataatatttatattcc
gi|2 : GTAAAACAC-T-TTTAATTAG--AAGACCTTTATTTTAAC---TATT-------ATTCACGAGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----TATCCG--A-AT--AACA-A-T-GCATTT-CCGGCAGTTGCACATTTTGAACATTTGCGAATTCAACATTTCGCGAATAAATCAAA-T-AGAACAAATCAGAGCAAATTCGCGAAATAA-AGTTCCTGCGAATTTA-A-AGTGTTT-T--AGTGTATATGTAAC
gi|3 : ACAC-T-TTTCATTAGCCAAAAATTTTATTTTCGC---TATT-------ATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----TATTCG--A-AT--AAAA-G-G-ACATTT-TAGGCTGTTTCACTTTTCTAACGTC-GCGAATTCAACAATTCGCGAATTAATACAA-T-ATGACAAAGCAGAGCAAATTTGCGAAATAA-ATATAAC-----TTTATACAGTGTTT-T--GATGAAAATGCAACgcccctaagagaactgacaaacaataagttcgaat
gi|4 : tcacAAAACAC-T-TTTTATTAGC-GAAAACTTTATATTCGC---TATT-------ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT--------ATCCG--A-AT--AAAA-T-T-TTTTTTTCCTACTGTTACAGTTTTCGAACGTC-GCGAATCAAACATTTCGCGAATAAATAAAAAG-AGAAAAAGTCAGAGCAAATCCGCAAAATAA-AGCTCACGGGAATTTA-A-AGTGTTT-A--ACAG--TATGCAACtatcaaaatttaaacattgatttgataagctcaaatga
gi|5 : aGTTAACCAC-T-TCTTATCAGC-GAGAACTTTATTTTCAC---TATT-------ATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------TATCTA--A-AT--GAAA-T-TTGCCTTG-CCGG---TTTCGCTTTTCGAATGTC-GCGAATTCAACATTTTCCGAGTAAAAATAA-T-AAGATAAATCAGAGCAAATTTACGAAATAA-AGTTCACCCGAAAATG-A-AGTGTTT-T--AAAGTATtttatagatacttatgaggaccaattgcacagaaaatag
gi|6 : ACCTG-------TACTTG--A-AT--AAAA-AGT-ACATTT-CTAGCAGTTTCAATTTTTAATCATC-ACAAATTCAACATTTTGCGAATAAATAATA-T-AGGACAAATCAGAGCAAATTCGCAAAATAA-AGTTCATGTGAATTTA-A-AGTGTTT-T--ACAGTAtcggcgagatttaaagtaatattgtatttttcgtaaacaac
gi|7 : caagaacttttttttccaattatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntGCAAAGCAT-T-TTTTATTCAC-AAGAACCTTATTTTTGC---TATT-------ATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTT-----------------AT--AAAAGA-T-GTATTT-CTGGTGGTTCCACTTTTCAAAACTC-GCAAATTCAACATTTCGCAAATTAATAAAA-T-AGGACAAATCAGAGCAAATTTACAAAAT-A-AGTTCACCCAAATTTA-G-AGTGTTT-T--ACAGTTTGTGccgtagttataattatgttcacaacattggttttatgtgtgaactcggattt
gi|8 : GTAAAACAC-T-TTTTATTAGC-AAGATCTTTATTTTCGCAATTATT-------ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTCCATAATAT--AAAA-A-T-GTATTG-CAGACAGTTTAATCTTTCGAATGTT-GCGATGTCACCATTTCACGATTAAATCATA-T-AGGACAAATCGGAGCAAATTCGTGAAATAAGAGTTCAAGCCAGTTAT-A-AGTagaatacatcgagcaatctgaaaagattttgactaaaat
gi|9 : TGTTAGC-AAGAACTTT--TTTTG----TATT-------ATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAA-----------TA------------AAAA-A-G-GCATTT-CCAGCGGTTTCACTTTTCTAACGTC-GTGAATTCAACATTTCATGAATAAATAAAA-T-AAGACAAATCAGAGCAATTTCGCGAAATAA-GGTCCATGCGAATTTA-A-AGTGTTT-agatttgaata
blockSeqs : A G C AAT TCNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN TA T TA AG T T G T TC G T C A TA C
blockSeqs : . . . . . ACGAGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN . . C GA . . G . AG . . . . . A
blockSeqs : . . . . . NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN . . . A . . G . G . . . . . G
blockSeqs : . . . . . NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN . . . A . . T . T . . . . . A
blockSeqs : . . . . . NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN . . . A . . A . C . . . . . C
blockSeqs : . . . . . NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT . . . A . . G . T . . . . . A
blockSeqs : . . . . . NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTT . . . A . . G . T . . . . . C
blockSeqs : . . . . . NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAA . . . G . . T . T . . . . . C
blockSeqs : . . . . . NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN . . . T . . G . T . . . .
blockSeqs : . . . GCGTGTTTAAACTCCCGCAAATTCAATCAATAGGTTCACTGTCAGAATATTTACAA . . . T . . A . T . . .
blockSeqs : . . . A . . G . T .
blockSeqs : . . . A . . G . T
blockSeqs : . . . . A . .
blockSeqs : . . . .
blockSeqCons :
originalCons : GTAAAACAC-T-TTTTATTAGC-GAGAACTTTATTTTCGC---TATT-------ATTCNCGAGTTNNNNGCGTGTTTAAACTCCCGCAAATTCAATCAATAGGTTCACTGTCAGAATATTTACAAACCTT-------TATCCG--A-AT--AAAA-A-T-GCATTT-CCGGCGGTTTCACTTTTCGAACGTC-GCGAATTCAACATTTCGCGAATAAATAAAA-T-AGGACAAATCAGAGCAAATTCGCGAAATAA-AGTTCACGCGAATTTA-A-AGTGTTT-T--ACAGTATATGCAAC
finalCons : GTAAAACAC-T-TTTTATTAGC-GAGAACTTTATTTTCGC---TATT-------ATTCNCGAGTTNNNNGCGTGTTTAAACTCCCGCAAATTCAATCAATAGGTTCACTGTCAGAATATTTACAAACCTT-------TATCCG--A-AT--AAAA-A-T-GCATTT-CCGGCGGTTTCACTTTTCGAACGTC-GCGAATTCAACATTTCGCGAATAAATAAAA-T-AGGACAAATCAGAGCAAATTCGCGAAATAA-AGTTCACGCGAATTTA-A-AGTGTTT-T--ACAGTATATGCAAC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): ATAAGACTGGGTACTGTATACTACATATTAATGCAATAATTCCGGCTTTAATTGA
Alignments
lowQualScore : 1111111 8888888888888888888888888888888888888888888888888888888888888888888888888888888
lowQualScore : 4 4 3 666 1111111 3333333333333333333333333333333333333333333333333333333333333333333333333333333 44 3 66 555 2 2 1 0 2 222 3 0 3 3 4 66 1
lowQualScore : . . . ... ....... ............................................................................... .. . .. ... . . . . . ... . . . . . .. .
lowQualScore : 0 0 6 444 8888888 2222222222222222222222222222222222222222222222222222222222222222222222222222222 22 1 88 000 7 7 5 9 7 999 3 8 6 6 0 11 1
consensus : GTAAAACAC-T-TTTTATTAGC-GAGAACTTTATTTTCGC---TATT-------ATTCNCGAGTTNNNNGCGTGTTTAAACTCCCGCAAATTCAATCAATAGGTTCACTGTCAGAATATTTACAAACCTT-------TATCCG--A-AT--AAAA-A-T-GCATTT-CCGGCGGTTTCACTTTTCGAACGTC-GCGAATTCAACATTTCGCGAATAAATAAAA-T-AGGACAAATCAGAGCAAATTCGCGAAATAA-AGTTCACGCGAATTTA-A-AGTGTTT-T--ACAGTATATGCAAC
Reference ( family-34 ) : GTAAAACAC-T-TTTTATTAGC-GAGAACTTTATTTTCGC---TATT-------ATTCNCGAGTTNNNNGCGTGTTTAAACTCCCGCAAATTCAATCAATAGGTTCACTGTCAGAATATTTACAAACCTT-------TATCCG--A-AT--AAAA-A-T-GCATTT-CCGGCGGTTTCACTTTTCGAACGTC-GCGAATTCAACATTTCGCGAATAAATAAAA-T-AGGACAAATCAGAGCAAATTCGCGAAATAA-AGTTCACGCGAATTTA-A-AGTGTTT-T--ACAGTATATGCAAC
gi|1 : TAAACCAC-T-TTTTAATAGA-GAGAACTTTATTTTCGC---TATT-------ATTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------TATGTG--A-AT--AAAA-A-T-ACATTT-CCTACGGTTTCACTTTTCGAAAATC-GCAAATTCAACATTTTGCAAATAAATCAAA-T-ACTTCAAATCAGAGCAAATTTGCAAAATAA-AGTTTATGCGAATTTA-A-AGTGTTT-T--ACAGTA
gi|10 : GTGAAACAC-T-ATTTATAAGC-AAGAACTTCATTTTCGC---TATT-------ATTC-----------GCGTGTTTAAACTCCCGCAAATTCAATCAATAGGTTCACTGTCAGAATATTTACAA------------TATCCG--A-TTC-AAAA-A-T-GCATTT-CTGGCAGTTTCACTTGTGGAACGTC-GTGAATTGAACATTTTGCAAATAAATCGAA-G-AGGCCAAATCTGAGCCAATTattttttttaattttaaacattttttattctgattgaaatttatacaag
gi|11 : actAACAC-TGTTTTATTAGC-GACAATTTTATTTTCCC---TATT-------ATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--------------------TATTCC--A-AT--AAAA---T-GTATTT-CCGGTGGTTTCACTTTTCGAACG-----------------TTACGAATAAATAAAA-T------TAATCAAAGC-AATTCGTGAAATAA-AGTTCAAGCggaaaa
gi|12 : -GTATTT-CAGGCGGTTTTACTTTTCAAACGTC-GCGAATTCAAGATTTCACGAATAAATAAAA-C-AGGACCTATC--AACAAAGTCGCGAAATAA-AGTTCACGCGTATGTA-A-AATATTTATTAACAATGTATGttag
gi|13 : GTAAAACACAT-TTTTATTAGA-GA-AACTTTATTTTTGC---TACTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------TATCCG--A-ATTAAAAA-A-T-GTCCTT-CCTG-------------CGAACGTT-GCGAATTCAACATTTCGacactatccgtggtttaatactgtatttaatctaatatttagattttgtttgaaaac
gi|14 : attCCA--A-AT--AAAA-A-T-GCATTT-CCAGCGGTTTCACTTTTCGAACTTT-GCAAATTCAACATTTTGC----------------AGACAAGTCAGAGAATATTCATGAAATAA-AGTCCATGTGAATTTA-A-AGTGTTT-T--GAAGTATGT-CAA
gi|15 : --AACA-A-T-GCATTT-CT--CG-TTTCATTTTTT-AACGTC-GCTAA-----------------AAATAAAA-TCGGGACAAATCAGAGCAAATTCGCAAAAtagaaatatttataatatttatattcc
gi|2 : GTAAAACAC-T-TTTAATTAG--AAGACCTTTATTTTAAC---TATT-------ATTCACGAGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----TATCCG--A-AT--AACA-A-T-GCATTT-CCGGCAGTTGCACATTTTGAACATTTGCGAATTCAACATTTCGCGAATAAATCAAA-T-AGAACAAATCAGAGCAAATTCGCGAAATAA-AGTTCCTGCGAATTTA-A-AGTGTTT-T--AGTGTATATGTAAC
gi|3 : ACAC-T-TTTCATTAGCCAAAAATTTTATTTTCGC---TATT-------ATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----TATTCG--A-AT--AAAA-G-G-ACATTT-TAGGCTGTTTCACTTTTCTAACGTC-GCGAATTCAACAATTCGCGAATTAATACAA-T-ATGACAAAGCAGAGCAAATTTGCGAAATAA-ATATAAC-----TTTATACAGTGTTT-T--GATGAAAATGCAACgcccctaagagaactgacaaacaataagttcgaat
gi|4 : tcacAAAACAC-T-TTTTATTAGC-GAAAACTTTATATTCGC---TATT-------ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT--------ATCCG--A-AT--AAAA-T-T-TTTTTTTCCTACTGTTACAGTTTTCGAACGTC-GCGAATCAAACATTTCGCGAATAAATAAAAAG-AGAAAAAGTCAGAGCAAATCCGCAAAATAA-AGCTCACGGGAATTTA-A-AGTGTTT-A--ACAG--TATGCAACtatcaaaatttaaacattgatttgataagctcaaatga
gi|5 : aGTTAACCAC-T-TCTTATCAGC-GAGAACTTTATTTTCAC---TATT-------ATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------TATCTA--A-AT--GAAA-T-TTGCCTTG-CCGG---TTTCGCTTTTCGAATGTC-GCGAATTCAACATTTTCCGAGTAAAAATAA-T-AAGATAAATCAGAGCAAATTTACGAAATAA-AGTTCACCCGAAAATG-A-AGTGTTT-T--AAAGTATtttatagatacttatgaggaccaattgcacagaaaatag
gi|6 : ACCTG-------TACTTG--A-AT--AAAA-AGT-ACATTT-CTAGCAGTTTCAATTTTTAATCATC-ACAAATTCAACATTTTGCGAATAAATAATA-T-AGGACAAATCAGAGCAAATTCGCAAAATAA-AGTTCATGTGAATTTA-A-AGTGTTT-T--ACAGTAtcggcgagatttaaagtaatattgtatttttcgtaaacaac
gi|7 : caagaacttttttttccaattatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntGCAAAGCAT-T-TTTTATTCAC-AAGAACCTTATTTTTGC---TATT-------ATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTT-----------------AT--AAAAGA-T-GTATTT-CTGGTGGTTCCACTTTTCAAAACTC-GCAAATTCAACATTTCGCAAATTAATAAAA-T-AGGACAAATCAGAGCAAATTTACAAAAT-A-AGTTCACCCAAATTTA-G-AGTGTTT-T--ACAGTTTGTGccgtagttataattatgttcacaacattggttttatgtgtgaactcggattt
gi|8 : GTAAAACAC-T-TTTTATTAGC-AAGATCTTTATTTTCGCAATTATT-------ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTCCATAATAT--AAAA-A-T-GTATTG-CAGACAGTTTAATCTTTCGAATGTT-GCGATGTCACCATTTCACGATTAAATCATA-T-AGGACAAATCGGAGCAAATTCGTGAAATAAGAGTTCAAGCCAGTTAT-A-AGTagaatacatcgagcaatctgaaaagattttgactaaaat
gi|9 : TGTTAGC-AAGAACTTT--TTTTG----TATT-------ATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAA-----------TA------------AAAA-A-G-GCATTT-CCAGCGGTTTCACTTTTCTAACGTC-GTGAATTCAACATTTCATGAATAAATAAAA-T-AAGACAAATCAGAGCAATTTCGCGAAATAA-GGTCCATGCGAATTTA-A-AGTGTTT-agatttgaata
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): ATAAGACTGGGTACTGTATACTACATATTAATGCAATAATTCCGGCTTTAATTGA