lowQualScore                  :                             2222      111                            2222222222222222             11111     4444444444444444444444444444444444444                    2222                   1                22222                            1                1            777777777777777777777777777777777777      1111                             22222222222222222222222222       1         11111   11111111111111          1                                    11                  11       1              
lowQualScore                  :                    2   6    2222   0  555   7         4    3   44    7777777777777777   33  555   00000 0   4444444444444444444444444444444444444 33   99999   33    2222  4444 2  333 6    2         22     77777 1  555555           9999   5   44444  1     2     2   2  777777777777777777777777777777777777      8888                  33 33  333 44444444444444444444444444       5    2    00000   99999999999999          8    2     2      333 2          4   55                  99       1       1  2   
lowQualScore                  :                    .   .    ....   .  ...   .         .    .   ..    ................   ..  ...   ..... .   ..................................... ..   .....   ..    ....  .... .  ... .    .         ..     ..... .  ......           ....   .   .....  .     .     .   .  ....................................      ....                  .. ..  ... ..........................       .    .    .....   ..............          .    .     .      ... .          .   ..                  ..       .       .  .   
lowQualScore                  :                    8   8    3333   2  999   1         7    1   22    8888888888888888   77  000   44444 2   8888888888888888888888888888888888888 77   33333   44    0000  5555 1  555 9    9         22     22222 9  555555           2222   1   88888  9     2     0   0  777777777777777777777777777777777777      5555                  11 11  999 11111111111111111111111111       1    8    22222   11111111111111          2    2     2      555 0          0   55                  77       3       7  5   
consensus                     :                TTTTNAGTATACGCCC-GGGGGAG--GGTGTGGGAGGGGGTTGT-CCC--CCTCCT--ACT---------TGC--GG---GGGAT---TGGGG-----------T-C--C--CC-CCC---G-A------T--TTT-----TTT--TTAAT-T-GA----A-CT---GCAAATGAGTAGTTTT-TAGCGACT---T-TG------ACACGGACTGT---GAAGTCAT-----TC-AAATTGCCCGA-AAT-TA-----------T--A----CGGG-T--TTT-TT-TATTTCCTA---AAGCACGAACCCCTTACC--C--CA---T-A-C-----CC------N---C-TTCGGCTTCATTTTTTATTGCA-T-TTT------------C-GCATTTTAAC-TTTT-TTTTA-TTTTCC---A-CATTCAACTC-TGAGTTATACGCCCGGGCGTATAGGAGTATGCCTAGGAACGCCCCTG
Reference ( gi|5 )            :                TTTTGAGTGTACGTTT-GGGGGAT--GGTATGGGAGGGGGTTGT-CCC--CCTCGT--TCC---------TGC--GG---GGGAT---TGGGG-----------T-C--C--CC-CTC---A-A------T--TTT-----TTT--TTAAC-T-GA----A-CT---GTAAATTAGTAGTTTT-TAGCGAAG---T-TG------ACACGGACTGT---AAAGACAT-----TC-AAATTCCCCGA-AAT-TA-----------T--A----C----T--TTTATTATATTTCCTT---AAGCACGAACCCCTTACC--C--CA---T-A-T-----CC------A---C-TTAGGCTTCATTTTTTATTGTA-T-TTT------------C-GCATTTTAACATTTT-TTTTA-TTTTCC---A-CATTCAACTC-TGATCTATACGCCCGGGCGTATATAAGTATGCATAGGAACACCTCTG
gi|6                          :                TTTGGAGTTAACGTTT-GGGGGAT--GGTGTGGGAGGGGGTTGT-CCC--CCTCGT--TCC---------TGC--GG---GGGAT---TGGGG-----------T-C--C--CC-CTC---A-A------T--TTTC----TTT--TTAAT-T-GA----A-GT---GCAAATAAGTAGTTTT-TAGCGAAG---T-TG------ACACGGACTGT---AAAGACAT-----TC-AAATTCCCCGA-AAT-TA-----------T--A----C----T--TTTATTATATTTCCTT---AAGCACGTACCCCTTACC--C--CA---T-A-C-----CC------A---C-TTAGGCTTCATTTTTTATTGTA-T-TTT------------C-GCATTTTAACATTTT-TTTTA-TTTTCC---A-CATTCAACTC-TGATCTTTACGCCCGGGCGTATATAAGTATGCATAGGAACGCCTCT
gi|2                          :                TTTTTAGTATACGTCC-GTGGGAG--GGTATGGGAGGGA-TTAC-CCC--CCTCGA--ACT---------TGC--GATGTGGGAG---TAGGG-----------T-C--CTTCC-CCC---G-AGA----TCATTT-----TCT--TTAAT-A-GA----A-CTTCTGTCGTTGAATAGTTTT--AGCGACT---T-TG------ATACGGACTGT---GAGTTCAT-----TT-AAATTACCCGA-AAG-TA-----------T--ACGGGC----T--TTC----TATTTCCTCCTAAAGCACGAATCCATTACCAAA--CA---C-A-CTA---CC------A---T-TTCGGCTTCA-TTTTTATTGCATT-TTT------------C-GGATTCT--CATTTT-TAATT-TTTTCC---A-CATTCAACTCTTGAGTTATACGACCGGGTGTAAAGGAGTATGCCTAGGAACGCCCCT
gi|4                          :          cctagtTTTTGAGTATATACC--AGTGAAG--GGTGTGTCAGGGG-CTGT-CCC--CCTCCT--ACT---------TGC--GG---GGTAT---TGGGGATGTTCGGGGCT-C--T--CC-TCC---G-A------G--ATT-----TTT--TTAATAT-GA------CT---GCAAATAAGTTGTTTT--GGCGACT---T-TT------ACACTAACAGT---AAAGTCAT-----TA-AAATTGCCCGA-ATT-TA-----------T--A----CGGGTT--TTCA----ATTTCCTA---AAGCATGA------T-CC--C--CA---T-A-C-----CC------T---T-TTCGGTTTCATTTTT-ATTGCACT-TTT------------C-GCATTTTAACTTTTTCTTTTA-TTTTCC---A-CAGTCAACTC-TGAGTTATACGCCCGGGCGTATAGGCGTATACCTATGAACGCCt
gi|1                          :    ttcctagatggtTTTTTAGTAAACGCCC-GGG--AA--GGTGTGGGAGGGGGTTGT-CTC--TCTCCT--CCT---------TGC--GG---GGG-T---TGTGG-----------TGCAGC--CC-CT------A------T--ATT-----TTT--TTAAT-A-GA----A-CT---GCAAATGAGAAGTTTT-TATCAGAGACATATGTCAACAACACGGACCGT---GAAGCAAT-----TC-AAATTGCCGGA-TAG-TA-----------T--A----CGGG-T--T---TTCTATTTCCTA---CAGCACGAACCCCTTACT--CAACAGGCT-A-C-----TC----------C-TTCGGCTCCAAATTGTATTGCA-T-TTT------------C-GCATGTTAAC--CCT-TTATA-TTTTCC---A-CATTCAACTC-Tc
gi|14                         : ggcggtcctgtatgtTTTTG-GTATACACCCCGGGGGAG--GGTATGGGACGGGGTTGTCCCC--CCTCGT--ACT---------TGC--cagtataggtgccaaaccgccaaggaacacacctgacttagttatgc
gi|19                         :  gttcctagatgattTTTTTAGTATACGTCC-GGAAGAG--GGGGTGGGAGGGTGTTGT-CTC--CCATGT--ACT---------TGC--TG---GG------TGGGGGTGGTTG----T-C--C--CCTCCC---A-A------T--TTT-----TTT----AAT-A-GA----A-CT---GCAAATGAGTAGTTTT-TAGCGACT---T-TG------ACATGGCCTG-----AAGTGTT-----TC-AAATTGCCTGA-AAT-TA-----------aaatgagtagtttttaatgactttggcactgactgtgaagttattcaaattgcccgaaattttacgggtattctatcttccaaagcactaaccccttacccaataatcccattcggcttaattttattacatttttgcagttgaacctattttcattttccacattcagctcagagtaatacga
gi|15                         :        ttagatgtTTTTATGTATACGCCC-GGGAGAG--GGTGTTGGAGGATGTTGT-CCCCTCCTAGT--------------TGC--GG---GGGAT---T-GGG-----------T-C--C--TC-CCCCGAG-A------T--TTTCTCTCTTT--TAAAT-T-AATAGCA-CT---GCAAATGAGTAGTTTGATAAC---T---T-TG------ACACGAACTTT---AAAGTCAT-----TA-ATATTGCCGAA-AAT-TAGCATTTCAACCT--A----T----T--TTTATT---TTTCaaaatatctttttcctaaagtg
gi|23                         :   attcctagttagtTTTTGAGTATACG-----GAGGAA--GATGTGAGAGTGGGTTG--ACT--CCTCCT--ACT---------TGT--GG---GGGAT---T-----------------------------------------------------CT--TTAAT-T-GA----A-CT---GCAAATGAGTAGTCTT-TAGTGACT---T-TG------ACACAGACTGT----AAGTCAT-----TC-AATTTGCCCacattcatttctgagtaatgggcgtataggagcatgcct
gi|3                          :  gtattcctagatggaTTAGAGTATACGCCC-GGTGGGG--GGTCTGGGAGTGG-TTGT-CCC--CCCCCC--CCCCCCCCCACCTACTTGA---GTGA-----GGGG-----------T-C--C--TC-TCCCGAG-A------T--TTC-----TTT--TTAGA-TAGA----A-CT---GCAAATTGGTAGTTTT-TAGCGAAT---T-TA------TCTCTAACTGG---GAAGTCAT-----TT-AAATGGTCTGA-AAT-TA-----------G--A----CGGG-T--T---TTCTATTTCCTA---AAGCACGAACCCCTTACG--T--CA---T-A-T-----AC------C---C-TCCGGCTTCA-TTTTTATTGCATT-TTT------------C-GCATTTTAAC--CTT-TTTTA-TTTTTC---A-CATTCAACTC-TAAGTTTTA---CCATGTATATAGAAGTATTTCTAGGAACGCCC
gi|7                          :          gattgtcTTTTAGTATAC-TCC-CGGAGAG--AGTGTATAAGGGTGTT-T-TCC--CCTCCT--ACT---------TGC--AG---TGTGTGTGTGGGG-----------C-C--C--TT-CTCCT-ATA------T--TTT-----TTTCTTTTAT-A-GA----A-CT---GCAAATT-------TT-TAGCGGCT---T-TG------ACATGGACTGT---GAAATCAT-----TC-AAATTGCCCGA-AAA-TA-----------T--A----CGGGAT--TTC----TGTTTCCAA---AAGCACGAACCCCTTACC--C--GA---T-A-C-----CC-------------CAAGC-ACA-TTTTTATTGCA-TCTTT------------T-GCATTATAAC--CGT-TTTCA-GTTTCC---G-TATTCAACTC-TAAATTATGCGCCCGGGCGTTTACGAGTATGCCTAGGAAAGCCCCTg
gi|9                          :         ctataatgTTTCAGTATACGACC-AGGTGAG--GGTGTGGGAGGGGATTG--CCT--CCTCATACTTT---------TGT--GG---GG
gi|22                         :               agtcgttcctggatgtttaGGGGATGGGGT-TGTGAGGTGTTTTT-CCG--CCTCCA--ACT---------TGC--GT---GGG-T---TAGGT-----------C-C--T--CC-CCT---G-A------G--ATT-----TCT--TTAAT-A-GA----A-CT---GCAAATAAGCAG-TTT-TAGC--AG---------------ATGGA-GGG---AAAGGT-T-----TCAAAATTC----A-AATATA-----------TAAA----T----T--TTTAtttagcgactgacacggactgtggagtcattcaagttgcccgaaattatacggttttctatttcctaaagcatgaattccttatcccgtacacccctctttggcttcattttcattgcatatttcgtattttaacttttttttatttttctatcttcaactctcagtaatacgcccaggtgtattgcaatatgcctaggaacgcccctgagtgtggccagttacca
gi|10                         :                                    gcattttgagcaggggctGGGTGT-CCA--CCTTCT--ACT---------TGC--AG---CAGGT---TGGGAGGAC-------T-C--T--CC-C-C---A-AAGAT--T--TTT-----TTC--TTAAA-TAGA----A-CT---GCAAATGAGTAGCTTT-TAGCGACT---T-TG------GCAGGGACTTT---GAAGTCAT-----TC-AAACTGCCTGA-AAT-TA-----------T--A----TGGG-T--TTTCT---ATTTTCTG---AAGCATGAACCACTTACC--T--CA---T-A-C-----CC------A---C-TTCGGCTTCATTTTTT----------TT----------------ATT---GCATTTT-TCGCA-TTTTCC---A-CATTCAG--------TTATAGTCCTGGATGTATAGGAATATGCTTAGAAACGTCCCTatt
gi|11                         :                                                           gcttcctagatgttttttagtatacaccca--GG---GGGAA---TGG-------------T-C--A--CC-CGGG--A-A------T--TTA-----TTT--TTAAA-T-AA----AACT---GCGAATGAGTAGTTTT-TAACGACT---T-TG------ACACGGACTGT---CAAGTTAT-----TA-AAATTTCCCTA-AAT-TA-----------T--A----CGAG-T--TTTCTAAT---TCCTA---AAGCACGATCGCCT-ACC--C--CA---T---T-----C----------------GGCTTCA-TTTTTATTGCA-T-TTTC-----------C-GTATTTTAACCTTTT-TTTTA-TTTTCC---A-CATTCAACTC-TGAGTTATACGCCCGCGTGGATAGGAGAATGCCTAGGAACACCCCTG
gi|16                         :                                                     tgtgtttacatggtattgggggaggggtggggggag--GG---GGGAG----GGGG-----------T-C--C--TT-CCC---G-A------T--AAT-----TTC--T--------A----A-TT---G------AGTAGTTTT-TAGCGACT---T-TG------AAATGGACTCT---TAAGTCATCATGTTC-TAATTGCCCAA-AAT-TA------------------------------------------------GCACAGACCTCTTACC--C--CA---T-A-C-----CC------C---C-T----CCACAC----------A-C-TT-------------C-GCGTTC--A-ATCCT-TTTTA-T----C---A-CTTCCAACTC-TGAGTTATACATCCGGGCGGGTAGGAGTATGCATAGGAACGTCTCT
gi|13                         :                                                                          gggcgttcctagatgatttttgagtactcccaGGG-----------T-C--CT-CC-CCC---G-AGATTTGT--TTT-----CTT--TTA---TAGA----A-CT---GCAAGCGAGTAGCTTT--AGCG--GC--T-TA------ACACGGATTGTGTCAAAGTCAT-----TT-AAATTGCCCAA-AAC-TG-----------C--A----T----CAGTTT-TCA-ATTTTCTA---AAGCACGAACAATTTACT--C--TA---TTA-C-----CC------C---A-TTCGGCTTCATTTTCTATTGAA-TATTT------------C-GCATTTTAACCTTTT-TTTCA-TTTTCC---A-CATTCAACTCTTGAGTTACACGCCCGGGCGAACCGGAGTATGCGCAGGAATACCTCTG
gi|18                         :                                                                                                            t-----------T-T--C--TC-CTG---A-A------T--TTT-----TTT--TTA-C-TAGA----A-CT---GCAAATGAGTACTTTT-TAATGATT---T-TG------CCACAGACTG-----AAGTCAT-----TC-AAATTGCCCAA-AAT-TA-----------T--A----CGGG-T--T---TTCTATTTCCTA---AAGCACAAACC---------------------------CC------A---C-TTTGGCTTCA-TTTTTATT-----------------------GCATTTTAAC-CTTT-TTTTA-TTTTCC---A-TATTCAGCTC-CGAGTTATACGCCTGAACATATAGGAGTAT
gi|8                          :                                                                                                                                                         gtgtcTT--TTAAT-A-GA----A-CT---GCGTATGAGTAATTGT--AG--ACT---T-TG------ACATG-ACTGT---GAAGTCAT-----TC-AAATTGCCCGA-AAT-TA-----------T--A----CGGG-T--TATCTT---TTTCCTA---AAGCACGAGCCTCTTACC--C--TA---T-ACT-----CC------A---T-TTCGGCTTCATTTTCAAT-GCA-T-TTTT-----------C-GCATTTTAAC-TTTT-TTTTA-TTTTCC---A-CATTCAACTC-TGAGTTATACGCCCAGGCATATAGGAATATGCCTAAGAACACCCCTGt
gi|20                         :                                                                                               gacattattagatgggttttgagtatatgccttgggaaggggatggttcccttagtatttctcccatgaggtaa-GA----A-CT---GCAAATGAGTAGTTTT-TAGTGACT---T-TG------ACAAGGACTGT---GAAGTCAT-----TC-AAATTGCTTGA-AAT-T------------T------------------------------------GCACGAACCCCTGACC--C--CA---T-A-T-----CC------C---CATTTGGCTTCA-TTTTTGTTGCA-T-TTTAACTACTACATAT-GCATTTTAAC
gi|12                         :                                                                                                                                                                          aA----A-CT---GCAAATGGGTAGTTAT-TAGCGACT---T-TC------GCA-GGATTGT---GAAGTCAT-----TC-ATATTGCCTTT-AAT-CA-----------T--A----C----GGATTTCTTA-ATT-CCTA---AAGCAGAAACTCCTTACC--C---A---T-A-C-----CCCCTCCCATCTC-TTCGGCTTCATTTTTAATTGCT-T-TTT------------CCGTATTTTAACCTATT-TTTAA-GTGTGC---AACATTCAACTC-TGAGTTATACGCCAGGGCGTATAGTAGTATGACTAGGAACGCCCCTGtactacatatgcattttaactggacttttccaaactca
gi|17                         :                                                                                                                           ggggcgttccttgatggtttgagtattcaacagggatattgaataatat----A-CT---GCAAGTGAGTAGGTGA-TAACGACT---T-TG------ACACGGACTGT---GCTGTCAT-----TC-GAATTACTAAACAAT-TA-----------T--A----CGGG-T--TTTCT---ATTTCCTA---AAGCGTGCACACCTTACA--C--TA---C-G-TTTCCACC------A---C-TTCGTATTCATTTTT-ATTGCA-T-TTT------------CCGCATTTTGATATTTA-----A-TTATCC---A-CATTCAACTC-TGCTTTATACGCCCGGACGTATAGGAGTATGTCTAGGAAAGCCCCT
gi|14                         :                                                                                                                                                                            tttcattT---GCAAATGAGTAGTTTT-TAATGACT---T-TG------GCACTGACTGT---GAAGTTAT-----TC-AAATTGCCCGA-AAT-TT-----------T--A----C----G--GGTATTCTATCTTCCA---AAGCACTAACCCCTTACC--C--AA---TAA-T-----CC------C---A-TTCGGCTTAA--TTTTATTACA-T-TTT------------T-GCAGTTGAAC-CTAT-TTTCA-TTTTCC---A-CATTCAGCTC-AGAGTAATACG
gi|9                          :                                                                                                                                 gttcctagatgattttttggtatacaccccgggggagggtatgggacggggttgtcccccctcgtactTT-TAGCGA-----C-TG------ACACGGACTGT---GGAGTCAT-----TC-AAGTTGCCCGA-AAT-TA-----------T--A----C----G--GTT-TTCTATTTCCTA---AAGCATGAATTCCTTATC--C--CG---T-A-CACC--CC------T---C-TTTGGCTTCA-TTTTCATTGCA-TATTT------------C-GTATTTTAAC-TTTT-TTTTATTTTTCT---A-TCTTCAACTC-TCAGTAATACGCCCAGGTGTATTGCAATATGCCTAGGAACGCCCCTGa
gi|21                         :                                                                                                                                                                                                                                agtcgttcctggatgtttatttcagtatacgaccaggtgagggtgtgggaggggattgcctcctcatacttttgtggggTGTTTCTTA---AAGCATACAGCCCTTATT--C--CA---T-A-C-----CC------C---C-TTCGGCTTCATTTT--ATTGCA-T-TTTT-----------C-ACATTTTAA-ACTTT-T-TTA-TTTTCC---A-CATTCAACTC-TGAGTTATGCGTCAGGGC--------GTATGCCTAGGAACACCCCTGagtgtggccagttacca
gi|15                         :                                                                                                                                                                                                                                                                                                                                                                tcatttaaagccgccggaatgtgccgagtcagcaaatatacTT------------A-GCATTTCAAC-CTAT-TTTTA-TTTTTC---A-CATTCATTTC-TGAGTAAT------GGGCGTATAGGAGCATGC
gi|17                         :                                                                                                                                                                                                                                                              attcctagttagtttttatgtatacgcccgggagagggtgttggaggatgttgtcccctcctagttgcgggggattgggtcctcccccgagattttctctcttttaaattaatagcactgcaaatgagtagtttgataactttgacacgaactttaaagtcattaatattgccgaaaaTTTCCTAGA-CAT---ACTC-----CTATACGTCCGGGCGTATA-AAGCAct
gi|25                         :                                                                                                                                                                                                                                                       tttcattactgcaagtgagtaggtgataacgactttgacacggactgtgctgtcattcgaattactaaacaattatacgggttttctatttcctaaagcgtgcacaccttacactacgtttccaccacttcgtattcatttttattgcattttccgcattttgatatttaattatccacattcaactcCC---A-CGTTCGACTC-TGAGTTATACGCCCGTGCGTTTAGGAGTATGTCTAGGAACgcccct
gi|4                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                         CTATACGCCCGGGCGTATAcgctgcccct
gi|12                         :                                                                                                                                                                      ttcctagatggtttttgagtatataccagtgaagggtgtgtcaggggctgtccccctcctacttgcggggtattggggatgttcggggctctcctccgagatttttttaatatgactgcaaataagttgttttggcgacttttacactaacagtaaagtcattaaaattgcccgaatttatacgggttttcaatttcctaaagcatgatccccatacccttttcggtttcatttttattgcacttttcgcattttaactttttcttttattttccacagtcaactctgagtCTATACGCCCTGGCGTATAgcgtatacctatgaacgccc

Unaligned ( gi|24 ): AGGGATCAGGGGCGTGGCTAGACAGTGCTTGAGTATACGCCCGGGAGAGGGCGTGGAAAGGTGTTG
Unaligned ( gi|26 ): CCATTTAAATGTCAGTCTGTAGCTCAAACGTCCCTGACATATA

lowQualScore                  :                                                                                                                                                                                  11111111111111                         22222222222            22222222222222222222222                                                                                                                     1111111111                                             1111111                        1             111   111111111111              11                                                                                       
lowQualScore                  :                                                                                                                                  1 2         33      33    0         33  2       55555555555555         444  666666 2   22222222222 2  88  2   44444444444444444444444   22  22 2  88  4444 1  555                 333      1    555555            333      44444              2       2 0 7777777777   333                       22 333 333 2 22 5555555  666 888888888         5    666      111   444444444444 4       2  2 11    22   2 22      2           2 2                      22      2           5555       
lowQualScore                  :                                                                                                                                  . .         ..      ..    .         ..  .       ..............         ...  ...... .   ........... .  ..  .   .......................   ..  .. .  ..  .... .  ...                 ...      .    ......            ...      .....              .       . . ..........   ...                       .. ... ... . .. .......  ... .........         .    ...      ...   ............ .       .  . ..    ..   . ..      .           . .                      ..      .           ....       
lowQualScore                  :                                                                                                                                  0 5         22      22    2         33  6       44444444444444         111  777777 9   55555555555 2  33  2   33333333333333333333333   99  88 0  11  0000 9  222                 222      9    555555            333      88888              0       1 1 3333333333   555                       99 888 777 1 99 5555555  333 444444444         6    333      777   222222222222 0       0  0 00    99   1 99      0           0 0                      99      1           0000       
consensus                     :                                                                                                                              TTTTNA-GTATACGCCC-GGGGGA--GGGTGTGGGAGGGGGTTGTCCCCCTCC-------------TACTTGCGG---GGGAT---TGGGG-----------T-CC--CC-CCC---G-A------T--TTT-----TTT--TT--A-AT-NGA----A-CT---GCAAATGAGTAGTTTTT---AGCGAC-TTTG------ACACGGACTGTG---AAGTCA-----TTCAAATTGCCCGA-AATTATA-CGGGTTTT-TC-TATT---TCCTAAAGCACGAACCCCTTACC--C--CA---T-A--C-------CCNC-T---------TCGGCTTCATTTTTT--ATTGCA-T-TTT------------C-GCATTTT-AA-C-TTTTT--TTT-A--TTTTCC-ACATTCAACTC-T-GAGTTATACGCCCGGGCGTATA--GGAGTA-TGCCTAGGAAC----GCCCCTG
Reference ( family-2958 )     :                                                                                                                              TTTTNA-GTATACGCCC-GGGGGA--GGGTGTGGGAGGGGGTTGTCCCCCTCC-------------TACTTGCGG---GGGAT---TGGGG-----------T-CC--CC-CCC---G-A------T--TTT-----TTT--TT--A-AT-TGA----A-CT---GCAAATGAGTAGTTTTT---AGCGAC-TTTG------ACACGGACTGTG---AAGTCA-----TTCAAATTGCCCGA-AATTATA-CGGGTTTT-TT-TATT---TCCTAAAGCACGAACCCCTTACC--C--CA---T-A--C-------CCNC-T---------TCGGCTTCATTTTTT--ATTGCA-T-TTT------------C-GCATTTT-AA-C-TTTTT--TTT-A--TTTTCC-ACATTCAACTC-T-GAGTTATACGCCCGGGCGTATA--GGAGTA-TGCCTAGGAAC----GCCCCTG
gi|1                          :                                                                                                                              TTTTTA-GTAAACGCCC-GGG--A--AGGTGTGGGAGGGGGTTGTCTCTCTCC-------------TCCTTGCGG---GGG-T---TGTGG-----------TGCA--GC-CCC---T-A------T--ATT-----TTT--TT--A-AT-AGA----A-CT---GCAAATGAGAAGTTTTTATCAGAGACATATGTCAACAACACGGACCGTG---AAGCAA-----TTCAAATTGCCGGA-TAGTATA-CGGG-TTT-TC-TATT---TCCTACAGCACGAACCCCTTACT--CAACAGGCT-A--C-------TC-C-T---------TCGGCTCCAAATTGT--ATTGCA-T-TTT------------C-GCATGTT-AA-C--CCTT--TAT-A--TTTTCC-ACATTCAACTC-T-CAG-TATA
gi|10                         :                                                                                                               ggcggtcctgtatgtTTTTTA-GTATACACCC-AGGG--------------------TGTCCACCTTC-------------TACTTGCAG---CAGGT---TGGGAGGAC-------T-CT--CC-CCAAA-G-A------T--TTT-----TTT--CTTAA-AT-AGA----A-CT---GCAAATGAGTAGCTTTT---AGCGAC-TTTG------GCAGGGACTTTG---AAGTCA-----TTCAAACTGCCTGA-AATTATA-TGGGTTTT-CT--ATT---TTCTGAAGCATGAACCACTTACC--T--CA---T-A--C-------CCAC-T---------TCGGCTTCATTTTTTTTATTGCA-T-TTTT-----------C-GCATTTT------------------------CC-ACATTCA---------GTTATAGTCCTGGATGTATA--GGAATA-TGCTTAGAAAC----GTCCCTggtgccaaaccgccaaggaacacacctgacttagttatgc
gi|11                         :                                                                                                                                  gcttcctagatgt-GGGGGA--GGG-GTGGGGGGAGG--------------------------------GG---GGAAT------GG-----------T-CA--CC-CGG---G-A------A--TTTA----TTT--TT--A-AA-TAA----AACT---GCGAATGAGTAGTTTTT---AACGAC-TTTG------ACACGGACTGTC---AAGTTA-----TTAAAATTTCCCTA-AATTATA-CGAG-TTT-TC-TAAT---TCCTAAAGCACGATCGCC-TACC--C--CA---------------------T---------TCGGCTTCA-TTTTT--ATTGCA-T-TTTC-----------C-GTATTTT-AACC-TTTTT--TTT-A--TTTTCC-ACATTCAACTC-T-GAGTTATACGCCCGCGTGGATA--GGAGAA-TGCCTAGGAAC----ACCCCTG
gi|12                         :                                                                                                                                                                                                                                                            tgtgtttacatggtattT--A-AT-ATA----A-CT---GCAAATGGGTAGTTATT---AGCGAC-TTTC------GCA-GGATTGTG---AAGTCA-----TTCATATTGCCTTT-AATCATA-CGGATTTC-TT-AATT----CCTAAAGCAGAAACTCCTTACC--C---A---T-A--C-------CCCC-TCCCATCTCTTCGGCTTCATTTTTA--ATTGCT-T-TTT------------CCGTATTTT-AA-C-CTATT--TTT-AAGTGTGCA-ACATTCAACTC-T-GAGTTATACGCCAGGGCGTATA--GTAGTA-TGACTAGGAAC----GCCCCTG
gi|13                         :                                                                                                                                                                           ggggcgttccttgatggtttgagtattcaacagggatattgaaGGG-----------T-CCT-CC-CCC---G-AGATTTGT--TTT-----CTT--TT--A--T-AGA----A-CT---GCAAGCGAGTAGCTTT----AGCGGC-TT-A------ACACGGATTGTGTCAAAGTCA-----TTTAAATTGCCCAA-AACTGCATCAG--TTT-TC-AATT---TTCTAAAGCACGAACAATTTACT--C--TA---TTA--C-------CCCA-T---------TCGGCTTCATTTTCT--ATTGAA-TATTT------------C-GCATTTT-AA-C-CTTTT--TTTCA--TTTTCC-ACATTCAACTC-TTGAGTTACACGCCCGGGCGAACC--GGAGTA-TGCGCAGGAAT----ACCTCTG
gi|14                         :                                                                                                                             tTTTTTG-GTATACACCCCGGGGGA--GGGTAT------GGG------------------------------ACGG---GG--T---TG--------------T-CC--CC-CC------------------------------------T-CGT----A-CTT--GCAAATGAGTAGTTTTT---AATGAC-TTTG------GCACTGACTGTG---AAGTTA-----TTCAAATTGCCCGA-AATTTTA-CGGG-TAT-TC-TATC---TTCCAAAGCACTAACCCCTTACC--C--AA---T-AATC-------CCA--T---------TCGGCTTAA--TTTT--ATTACA-T-TTT------------T-GCAGTTG-AA-C-CTATT--TTC-A--TTTTCC-ACATTCAGCTC-A-GAGTAATACG
gi|15                         :                                                                                                                 gttcctagatgatTTTTTATGTATACGCCC-GGGAGA--GGGTGTTGGAGGATGTTGT-CCCCTCC-------------TAGTTGCGG---GGGAT---T-GGG-----------T-CC--TC-CCCCGAG-A------T--TTTCTCTCTTT--TA--A-AT-TAATAGCA-CT---GCAAATGAGTAG--TTT---GATAAC-TTTG------ACACGAACTTTA---AAGTCA-----TTAATATTGCCGAA-AATTAa
gi|15                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        attcctagttagTT------------A-GCATTTC-AA-C-CTATT--TTT-A--TTTTTC-ACATTCATTTC-T-GAGTAAT------GGGCGTATA--GGAGCA-TGCCTgcatttcaacctatttttatttttcacattcatttctgagtaatgggcgtataggagcatgcct
gi|16                         : attcctagttagtttttatgtatacgcccgggagagggtgttggaggatgttgtcccctcctagttgcgggggattgggtcctcccccgagattttctctcttttaaattaatagcactgcaaatgagtagtttgataactttgacacgaactttaaagtcattaatattgccgaaaa-------------TACTCCCAG---GGGGA---GGGGG-----------T-CC--TT-CCC---G-A------T-------------------A-AT-T---------T---CTAATTGAGTAGTTTTT---AGCGAC-TTTG------AAATGGACTCTT---AAGTCATCATGTTCTAATTGCCCAA-AATT-----------------------------AGCACAGACCTCTTACC--C--CA---T-A--C-------CCCC-T---------CCA----CA------------CA---CTT------------C-GCG-TTC-AA---TCCTT--TTT-A--T----C-ACTTCCAACTC-T-GAGTTATACATCCGGGCGGGTA--GGAGTA-TGCATAGGAAC----GTCTCT
gi|17                         :                                                                                                                                                                                                                                                 gggcgttcctagatgatttttgagT--TT--C-AT-T------A-CT---GCAAGTGAGTAGGTGAT---AACGAC-TTTG------ACACGGACTGTG---CTGTCA-----TTCGAATTACTAAACAATTATA-CGGGTTTT-CT--ATT---TCCTAAAGCGTGCACACCTTACA--C-------T-A--CGTTTCCACCAC-T---------TCGTATTCATTTTT---ATTGCA-T-TTT------------CCGCATTTT-GA-----TAT--TTA-A--TTATCC-ACATTCAACTC-T-GCTTTATACGCCCGGACGTATA--GGAGTA-TGTCTAGGAAA----GCCCCT
gi|18                         :                                                                                                                                                                                                                        G-----------T-CT--TC-TCCTG-A-A------T--TTT-----TTT--TT--A-CT-AGA----A-CT---GCAAATGAGTACTTTTT---AATGAT-TTTG------CCACAGAC--TG---AAGTCA-----TTCAAATTGCCCAA-AATTATA-CGGG-TTT-TC-TATT---TCCTAAAGCACAAAC-----------------------C-------CCAC-T---------TTGGCTTCA-TTTTT--ATT-----------------------GCATTTT-AA-C-CTTTT--TTT-A--TTTTCC-ATATTCAGCTC-C-GAGTTATACGCCTGAACATATA--GGAGTA-T
gi|19                         :                                                                                                                            gtTTTTTA-GTATACGTCC-GGAAGA--GGGGGTGGGAGGGTGTTGTCTCCCATG-------------TACTTGCTG---GG------TGGGGGTGGTTG----T-CC--CCTCCC---A-A------T--TTT-----TTT------A-AT-AGA----A-CT---GCAAATGAGTAGTTTTT---AGCGAC-TTTG------ACATGGCC--TG---AAGTGT-----TTCAAATTGCCTGA-AATTAAA---AATATC-TT---TT---TCCTAAAGt
gi|2                          :                                                                                                                      ttagatgtTTTTTA-GTATACGTCC-GTGGGA--GGGTATGGGAGGGA-TTACCCCCCTCG-------------AACTTGCGATGTGGGAG---TAGGG-----------T-CCTTCC-CCC---G-AGA----TCATTT-----TCT--TT--A-AT-AGA----A-CTTCTGTCGTTGAATAGTTTT----AGCGAC-TTTG------ATACGGACTGTG---AGTTCA-----TTTAAATTACCCGA-AAGTATA-CGGG-CTT-TC-TATTTCCTCCTAAAGCACGAATCCATTACCAAA--CA---C-A--CTA-----CCAT-T---------TCGGCTTCA-TTTTT--ATTGCATT-TTT------------C-GGATTCT-CA-T-TTTTA--ATT----TTTTCC-ACATTCAACTCTT-GAGTTATACGACCGGGTGTAAA--GGAGTA-TGCCTAGGAAC----GCCCCTtg
gi|20                         :                                                                                                                                                                                                                                                                                cctagtGA----A-CT---GCAAATGAGTAGTTTTT---AGTGAC-TTTG------ACAAGGACTGTG---AAGTCA-----TTCAAATTGCTTGA-AATT-T----------------------------GCACGAACCCCTGACC--C--CA---T-A--T-------CCCCAT---------TTGGCTTCA-TTTTT--GTTGCA-T-TTTAACTACTACATAT-GCATTTT-AA-C-Tt
gi|21                         :                                                                                                                                                                                                                                                                                                                                                                                                   a-TGTT---TCTTAAAGCATACAGCCCTTATT--C--CA---T-A--C-------CCCC-T---------TCGGCTTCATTTT----ATTGCATT-TTT------------C-ACATTTTAAA-C---TTT--TTT-A--TTTTCC-ACATTCAACTC-T-GAGTTATGCGTCAGGGC----------GTA-TGCCTAGGAAC----ACCCCTGactacatatgcattttaactggacttttccaaactca
gi|22                         :                                                                                     tcatttaaagccgccggaatgtgccgagtcagcaaatatacTTTTGA-GCAGGGGCT---GGGGATGGGGT-TGTGAGGTGTTTTTCCGCCTCC-------------AACTTGCGT---GGG-T---TAGGT-----------C-CT--CC-CCT---G-A------G--ATT-----TCT--TT--A-AT-AGA----A-CT---GCAAATAAGCAG-TTTT---AGC
gi|23                         :                                                                                                                           gcaTTTTGA-GTATACG-----GAGGA--AGATGTGAGAGTGGGTTG-ACTCCTCC-------------TACTTGTGG---GGGAT---T---------------------------------------------------CT--TT--A-AT-TGA----A-CT---GCAAATGAGTAGTCTTT---AGTGAC-TTTG------ACACAGACTGT----AAGTCA-----TTCAATTTGCCCagatggagggaaaggtttcaaaattcaaatatataaatttttaatt
gi|24                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               gtattcctagatggaCCCGGGCGTATACTCAAGCACTGTCTAGCCAC----GCCCCTG
gi|24                         :                                                                                                                          agggatTTGA-GTATACGCCC-GGGAGA--GGGCGTGGAAAGGTGTTGagagggcgtggaaaggtgttg
gi|25                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       agggatcaggggcgtggctagacagtgcCC-ACGTTCGACTC-T-GAGTTATACGCCCGTGCGTTTA--GGAGTA-TGTCTAGGAACCGCTGCCCCT
gi|3                          :                                                                                                                                   A-GTATACGCCC-GGTGGG--GGGTCTGGGAGTGG-TTGTCCCCCCCCCCCCCCCCCCACCTACTTG--A---GTGA-----GGGG-----------T-CC--TC-TCCCGAG-A------T--TTC-----TTT--TT--AGAT-AGA----A-CT---GCAAATTGGTAGTTTTT---AGCGAA-TTTA------TCTCTAACTGGG---AAGTCA-----TTTAAATGGTCTGA-AATTAGA-CGGGTTTT-CT--ATT---TCCTAAAGCACGAACCCCTTACG--T--CA---T-A--T-------ACCC-T---------CCGGCTTCA-TTTTT--ATTGCATT-TTT------------C-GCATTTT-AA-C--CTTT--TTT-A--TTTTTC-ACATTCAACTC-T-AAGTTTTA---CCATGTATATA--GAAGTA-TTTCTAGGAAC----GCCCC
gi|4                          :                                                                                                                   gattgtcttagTTTTGA-GTATATACC--AGTGAA--GGGTGTGTCAGGGG-CTGTCCCCCTCC-------------TACTTGCGG---GGTAT---TGGGGATGTTCGGGGCT-CT--CC-TCC---G-A------G--ATT-----TTT--TT--A-ATATGA------CT---GCAAATAAGTTGTTTT----GGCGAC-TTTT------ACACTAACAGTA---AAGTCA-----TTAAAATTGCCCGA-ATTTATA-CGGGTTTT-CA--ATT---TCCTAAAGCATGA------T-CC--C--CA---T-A--C-------CCTT-T---------TCGGTTTCATTTTT---ATTGCACT-TTT------------C-GCATTTT-AA-C-TTTTTCTTTT-A--TTTTCC-ACAGTCAACTC-T-GAGTTATACGCCCGGGCGTATA--GGCGTA-TACCTATGAAC----GCCCg
gi|5                          :                                                                                                                  ttcctagatggtTTTTGA-GTGTACGTTT-GGGGGA--TGGTATGGGAGGGGGTTGTCCCCCTCG-------------TTCCTGCGG---GGGAT---TGGGG-----------T-CC--CC-CTC---A-A------T--TTT-----TTT--TT--A-AC-TGA----A-CT---GTAAATTAGTAGTTTTT---AGCGAA-GTTG------ACACGGACTGTA---AAGACA-----TTCAAATTCCCCGA-AATTATA-C---TTTTATTATATT---TCCTTAAGCACGAACCCCTTACC--C--CA---T-A--T-------CCAC-T---------TAGGCTTCATTTTTT--ATTGTA-T-TTT------------C-GCATTTT-AA-CATTTTT--TTT-A--TTTTCC-ACATTCAACTC-T-GATCTATACGCCCGGGCGTATA--TAAGTA-TGCATAGGAAC----ACCTCTG
gi|6                          :                                                                                                                              TTTGGA-GTTAACGTTT-GGGGGA--TGGTGTGGGAGGGGGTTGTCCCCCTCG-------------TTCCTGCGG---GGGAT---TGGGG-----------T-CC--CC-CTC---A-A------T--TTTC----TTT--TT--A-AT-TGA----A-GT---GCAAATAAGTAGTTTTT---AGCGAA-GTTG------ACACGGACTGTA---AAGACA-----TTCAAATTCCCCGA-AATTATA-C---TTTTATTATATT---TCCTTAAGCACGTACCCCTTACC--C--CA---T-A--C-------CCAC-T---------TAGGCTTCATTTTTT--ATTGTA-T-TTT------------C-GCATTTT-AA-CATTTTT--TTT-A--TTTTCC-ACATTCAACTC-T-GATCTTTACGCCCGGGCGTATA--TAAGTA-TGCATAGGAAC----GCCTCT
gi|7                          :                                                                                                                               TTTTA-GTATACTCCC-GGAG-A--GAGTGTATAAGGGTGTT-TTCCCCTCC-------------TACTTGCAG---TGTGTGTGTGGGG-----------C-CCTTCT-CCT---ATA------T--TTT-----TTTCTTT--T-AT-AGA----A-CT---GCAAAT-------TTTT---AGCGGC-TTTG------ACATGGACTGTG---AAATCA-----TTCAAATTGCCCGA-AAATATA-CGGG-ATT-TC-TGTT---TCCAAAAGCACGAACCCCTTACC--C--GA---T-A--C-------CCC-------------AAGC-ACA-TTTTT--ATTGCA-TCTTT------------T-GCATTAT-AA-C--CGTT--TTC-A--GTTTCC-GTATTCAACTC-T-AAATTATGCGCCCGGGCGTTTA--CGAGTA-TGCCTAGGAAA----GCCCCT
gi|8                          :                                                                                                                      ctataatgTTTTGA-GTATATGCCT--------------TGGGAAGGGGATGGTTCCCT---------------TA-----------GTAT---T---------------T-CT--CC-CAT---G-A------G--GTA-----ATT--TT--A-AT-AGA----A-CT---GCGTATGAGTAATTGT----AG--AC-TTTG------ACATG-ACTGTG---AAGTCA-----TTCAAATTGCCCGA-AATTATA-CGGGTTAT-CT-T-TT---TCCTAAAGCACGAGCCTCTTACC--C--TA---T-A--CT------CCAT-T---------TCGGCTTCA-TTTTC--AATGCATT-TTT------------C-GCATTTT-AA-C-TTTTT--TTT-A--TTTTCC-ACATTCAACTC-T-GAGTTATACGCCCAGGCATATA--GGAATA-TGCCTAAGAAC----ACCCCTG
gi|9                          :                                                                                                               gacattattagatgggTTTCA-GTATACGACC-AGGTGA--GGGTGTGGGAGGGGATTG-CCTCCTCA-------------TACTTTTGT---GGGGT---T
gi|9                          :                                                                                                                                                                                                                                                                                              agtcgttcctggatgtttaTTT---AGCGAC-T--G------ACACGGACTGTG---GAGTCA-----TTCAAGTTGCCCGA-AATTATA-CGG--TTT-TC-TATT---TCCTAAAGCATGAATTCCTTATC--C--CG---T-A--CACC----CCTC-T---------TTGGCTTCATTTTC---ATTGCA-TATTT------------C-GTATTTT-AA-C-TTTTT--TTT-A--TTTTTCTATCTTCAACTC-T-CAGTAATACGCCCAGGTGTATT--GCAATA-TGCCTAGGAAC----GCCCCTGtagcgactgacacggactgtggagtcattcaagttgcccgaaattatacggttttctatttcctaaagcatgaattccttatcccgtacacccctctttggcttcattttcattgcatatttcgtattttaacttttttttatttttctatcttcaactctcagtaatacgcccaggtgtattgcaatatgcctaggaacgcccctgagtgtggccagttacca

Unaligned ( gi|26 ): CCATTTAAATGTCAGTCTGTAGCTCAAACGTCCCTGACATATA

lowQualScore                  :                                                                                                                                                                                  11111111111111                         22222222222            22222222222222222222222                                                                                                                  11111111                                               1111111                        1             1     111111111111              11                                                                                       
lowQualScore                  :                                                                                                                                  1 2         33      33    0         4   2       55555555555555         444  666666 2   22222222222 2  88  2   11111111111111111111111   7777  22 2 2 3     555                 333      1    555555            333       44444             2       2   66666666     333                       22 333 333 2 22 5555555  666 888888888         3    888      0 6   444444444444 4       2  2 11    22   2 22      2           2 2                      22      2           5555       
lowQualScore                  :                                                                                                                                  . .         ..      ..    .         .   .       ..............         ...  ...... .   ........... .  ..  .   .......................   ....  .. . . .     ...                 ...      .    ......            ...       .....             .       .   ........     ...                       .. ... ... . .. .......  ... .........         .    ...      . .   ............ .       .  . ..    ..   . ..      .           . .                      ..      .           ....       
lowQualScore                  :                                                                                                                                  0 5         22      22    2         2   6       44444444444444         111  777777 9   55555555555 2  33  2   88888888888888888888888   8888  99 1 1 1     222                 222      9    555555            333       88888             0       1   66666666     555                       99 888 777 1 99 5555555  333 444444444         0    999      5 3   222222222222 0       0  0 00    99   1 99      0           0 0                      99      1           0000       
consensus                     :                                                                                                                              TTTTNA-GTATACGCCC-GGGGGA--GGGTGTGGGAGGGGGTTGTCCCCCTCC-------------TACTTGCGG---GGGAT---TGGGG-----------T-CC--CC-CCC---G-A------T--TTT-----TTT----TT--A-A-TAGAACT---GCAAATGAGTAGTTTTT---AGCGAC-TTTG------ACACGGACTGTG---AAGTCAT-----TCAAATTGCCCGA-AATTATA-CGGGTTT--TTCTATT---TCCTAAAGCACGAACCCCTTACC--C--CA---T-A--C-------CCNC-T---------TCGGCTTCATTTTTT--ATTGCA-T-TTT------------C-GCATTTT-AA-C-TTTTT--TTT-A--TTTTCC-ACATTCAACTC-T-GAGTTATACGCCCGGGCGTATA--GGAGTA-TGCCTAGGAAC----GCCCCTG
Reference ( family-2958 )     :                                                                                                                              TTTTNA-GTATACGCCC-GGGGGA--GGGTGTGGGAGGGGGTTGTCCCCCTCC-------------TACTTGCGG---GGGAT---TGGGG-----------T-CC--CC-CCC---G-A------T--TTT-----TTT----TT--A-A-TNGAACT---GCAAATGAGTAGTTTTT---AGCGAC-TTTG------ACACGGACTGTG---AAGTCAT-----TCAAATTGCCCGA-AATTATA-CGGGTTT--TTCTATT---TCCTAAAGCACGAACCCCTTACC--C--CA---T-A--C-------CCNC-T---------TCGGCTTCATTTTTT--ATTGCA-T-TTT------------C-GCATTTT-AA-C-TTTTT--TTT-A--TTTTCC-ACATTCAACTC-T-GAGTTATACGCCCGGGCGTATA--GGAGTA-TGCCTAGGAAC----GCCCCTG
gi|1                          :                                                                                                                              TTTTTA-GTAAACGCCC-GGG--A--AGGTGTGGGAGGGGGTTGTCTCTCTCC-------------TCCTTGCGG---GGG-T---TGTGG-----------TGCA--GC-CCC---T-A------T--ATT-----TTT----TT--A-A-TAGAACT---GCAAATGAGAAGTTTTTATCAGAGACATATGTCAACAACACGGACCGTG---AAGCAAT-----TCAAATTGCCGGA-TAGTATA-CGGG-TT--TTCTATT---TCCTACAGCACGAACCCCTTACT--CAACAGGCT-A--C-------TC-C-T---------TCGGCTCCAAATTGT--ATTGCA-T-TTT------------C-GCATGTT-AA-C--CCTT--TAT-A--TTTTCC-ACATTCAACTC-T-CAG-TATA
gi|10                         :                                                                                                               ggcggtcctgtatgtTTTTTA-GTATACACCC-AGGG--------------------TGTCCACCTTC-------------TACTTGCAG---CAGGT---TGGGAGGAC-------T-CT--CC-CCAAA-G-A------T--TTT-----TTT----CTTAA-A-TAGAACT---GCAAATGAGTAGCTTTT---AGCGAC-TTTG------GCAGGGACTTTG---AAGTCAT-----TCAAACTGCCTGA-AATTATA-TGGGTTT--T-CTATT---TTCTGAAGCATGAACCACTTACC--T--CA---T-A--C-------CCAC-T---------TCGGCTTCATTTTTTTTATTGCA-T-TTTT-----------C-GCATTTT------------------------CC-ACATTCA---------GTTATAGTCCTGGATGTATA--GGAATA-TGCTTAGAAAC----GTCCCTggtgccaaaccgccaaggaacacacctgacttagttatgc
gi|11                         :                                                                                                                                  gcttcctagatgt-GGGGGA--GGG-GTGGGGGGAGG--------------------------------GG---GGAAT------GG-----------T-CA--CC-CGG---G-A------A--TTTA----TTT----TT--A-AATAAAACT---GCGAATGAGTAGTTTTT---AACGAC-TTTG------ACACGGACTGTC---AAGTTAT-----TAAAATTTCCCTA-AATTATA-CGAG-TT--TTCTAAT---TCCTAAAGCACGATCGCC-TACC--C--CA---------------------T---------TCGGCTTCA-TTTTT--ATTGCA-T-TTTC-----------C-GTATTTT-AACC-TTTTT--TTT-A--TTTTCC-ACATTCAACTC-T-GAGTTATACGCCCGCGTGGATA--GGAGAA-TGCCTAGGAAC----ACCCCTG
gi|12                         :                                                                                                                                                                                                                                                              tgtgtttacatggtattT--A-A-TATAACT---GCAAATGGGTAGTTATT---AGCGAC-TTTC------GCA-GGATTGTG---AAGTCAT-----TCATATTGCCTTT-AATCATA-CGGATTT--CT-TAAT---TCCTAAAGCAGAAACTCCTTACC--C---A---T-A--C-------CCCC-TCCCATCTCTTCGGCTTCATTTTTA--ATTGCT-T-TTT------------CCGTATTTT-AA-C-CTATT--TTT-AAGTGTGCA-ACATTCAACTC-T-GAGTTATACGCCAGGGCGTATA--GTAGTA-TGACTAGGAAC----GCCCCTG
gi|13                         :                                                                                                                                                                           ggggcgttccttgatggtttgagtattcaacagggatattgaaGGG-----------T-CCT-CC-CCC---G-AGATTTGT--TTT-----CTT----TT--A---TAGAACT---GCAAGCGAGTAGCTTT----AGCGGC-TT-A------ACACGGATTGTGTCAAAGTCAT-----TTAAATTGCCCAA-AACTGCATCAG--TT--TTCAATT---TTCTAAAGCACGAACAATTTACT--C--TA---TTA--C-------CCCA-T---------TCGGCTTCATTTTCT--ATTGAA-TATTT------------C-GCATTTT-AA-C-CTTTT--TTTCA--TTTTCC-ACATTCAACTC-TTGAGTTACACGCCCGGGCGAACC--GGAGTA-TGCGCAGGAAT----ACCTCTG
gi|14                         :                                                                                                                             tTTTTTG-GTATACACCCCGGGGGA--GGGTATGGGA------------------------------------CGG---GG--T---TG--------------T-CC--CC-CC---------------------------------------TCGTACTT--GCAAATGAGTAGTTTTT---AATGAC-TTTG------GCACTGACTGTG---AAGTTAT-----TCAAATTGCCCGA-AATTTTA-CGGG-TA--TTCTATC---TTCCAAAGCACTAACCCCTTACC--C--AA---T-AATC-------CCA--T---------TCGGCTTAA--TTTT--ATTACA-T-TTT------------T-GCAGTTG-AA-C-CTATT--TTC-A--TTTTCC-ACATTCAGCTC-A-GAGTAATACG
gi|15                         :                                                                                                                 gttcctagatgatTTTTTATGTATACGCCC-GGGAGA--GGGTGTTGGAGGATGTTGT-CCCCTCC-------------TAGTTGCGG---GGGAT---T-GGG-----------T-CC--TC-CCCCGAG-A------T--TTTCTCTCTTTTAAATT--A-A-TAGCACT---GCAAATGAGTAG--TTT---GATAAC-TTTG------ACACGAACTTTA---AAGTCAT-----TAATATTGCCGAA-AATTAa
gi|15                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     attcctagttagTT------------A-GCATTTC-AA-C-CTATT--TTT-A--TTTTTC-ACATTCATTTC-T-GAGTAAT------GGGCGTATA--GGAGCA-TGCCTgcatttcaacctatttttatttttcacattcatttctgagtaatgggcgtataggagcatgcct
gi|16                         : attcctagttagtttttatgtatacgcccgggagagggtgttggaggatgttgtcccctcctagttgcgggggattgggtcctcccccgagattttctctcttttaaattaatagcactgcaaatgagtagtttgataactttgacacgaactttaaagtcattaatattgccgaaaa-------------TACTCCCAG---GGGGA---GGGGG-----------T-CC--TT-CCC---G-A------T--AAT-----TTC----T---A-A-T--------------TGAGTAGTTTTT---AGCGAC-TTTG------AAATGGACTCTT---AAGTCATCATGTTCTAATTGCCCAA-AATTA-----------------------------GCACAGACCTCTTACC--C--CA---T-A--C-------CCCC-T---------CCA----CA------------CA-C-TT-------------C-GCGTTC--AA---TCCTT--TTT-A--T----C-ACTTCCAACTC-T-GAGTTATACATCCGGGCGGGTA--GGAGTA-TGCATAGGAAC----GTCTCT
gi|17                         :                                                                                                                                                                                                                                                                  gggcgttcctagatgatttttgagACT---GCAAGTGAGTAGGTGAT---AACGAC-TTTG------ACACGGACTGTG---CTGTCAT-----TCGAATTACTAAACAATTATA-CGGGTTT--T-CTATT---TCCTAAAGCGTGCACACCTTACA--C-------T-A--CGTTTCCACCAC-T---------TCGTATTCATTTTT---ATTGCA-T-TTT------------CCGCATTTT-GA-----TAT--TTA-A--TTATCC-ACATTCAACTC-T-GCTTTATACGCCCGGACGTATA--GGAGTA-TGTCTAGGAAA----GCCCCT
gi|18                         :                                                                                                                                                                                                                 tttcattG-----------T-CT--TC-TCCTG-A-A------T--TTT-----TTT----TT--A-C-TAGAACT---GCAAATGAGTACTTTTT---AATGAT-TTTG------CCACAGACTG-----AAGTCAT-----TCAAATTGCCCAA-AATTATA-CGGGTTT--T-CTATT---TCCTAAAGCACAAACCCC------------------------------AC-T---------TTGGCTTCATTTTT--------A-T-T----------------GCATTTT-AA-C-CTTTT--TTT-A--TTTTCC-ATATTCAGCTC-C-GAGTTATACGCCTGAACATATA--GGAGTA-T
gi|19                         :                                                                                                                            gtTTTTTA-GTATACGTCC-GGAAGA--GGGGGTGGGAGGGTGTTGTCTCCCATG-------------TACTTGCTG---GG------TGGGGGTGGTTG----T-CC--CCTCCC---A-A------T--TTT-----TTT--------A-A-TAGAACT---GCAAATGAGTAGTTTTT---AGCGAC-TTTG------ACATGGCC--TG---AAGTGTT-----TCAAATTGCCTGA-AATTAAA-AA----T--ATCTTTT---TCCTAAAGt
gi|2                          :                                                                                                                      ttagatgtTTTTTA-GTATACGTCC-GTGGGA--GGGTATGGGAGGGA-TTACCCCCCTCG-------------AACTTGCGATGTGGGAG---TAGGG-----------T-CCTTCC-CCC---G-AGA----TCATTT-----TCT----TT--A-A-TAGAACTTCTGTCGTTGAATAGTTTT----AGCGAC-TTTG------ATACGGACTGTG---AGTTCAT-----TTAAATTACCCGA-AAGTATA-CGGG-CT--TTCTATTTCCTCCTAAAGCACGAATCCATTACCAAA--CA---C-A--CTA-----CCAT-T---------TCGGCTTCA-TTTTT--ATTGCATT-TTT------------C-GGATTCT-CA-T-TTTTA--ATT----TTTTCC-ACATTCAACTCTT-GAGTTATACGACCGGGTGTAAA--GGAGTA-TGCCTAGGAAC----GCCCCTtg
gi|20                         :                                                                                                                                                                                                                                                                                  cctagtGAACT---GCAAATGAGTAGTTTTT---AGTGAC-TTTG------ACAAGGACTGTG---AAGTCAT-----TCAAATTGCTTGA-AATT-T----------------------------GCACGAACCCCTGACC--C--CA---T-A--T-------CCCCAT---------TTGGCTTCA-TTTTT--GTTGCA-T-TTTAACTACTACATAT-GCATTTT-AA-C-Tt
gi|21                         :                                                                                                                                                                                                                                                                                                                                                                                                aCTGTT---TCTTAAAGCATACAGCCCTTATT--C--CA---T-A--C-------CCCC-T---------TCGGCTTCATTTT----ATTGCATT-TTT------------C-ACATTTTAAA-C---TTT--TTT-A--TTTTCC-ACATTCAACTC-T-GAGTTATGCGTCAGGGC----------GTA-TGCCTAGGAAC----ACCCCTGactacatatgcattttaactggacttttccaaactca
gi|22                         :                                                                                      tcatttaaagccgccggaatgtgccgagtcagcaaatataTTTTGA-GCAGGGGCT---GGGGATGGGGT-TGTGAGGTGTTTTTCCGCCTCC-------------AACTTGCGT---GGG-T---TAGGT-----------C-CT--CC-CCT---G-A------G--ATT-----TCT----TT--A-A-TAGAACT---GCAAATAAGCAG-TTTT---AGC
gi|23                         :                                                                                                                           gcaTTTTGA-GTATACG-----GAGGA--AGATGTGAGAGTGGGTTG-ACTCCTCC-------------TACTTGTGG---GGGAT---T---------------------------------------------------CT----TT--A-A-TTGAACT---GCAAATGAGTAGTCTTT---AGTGAC-TTTG------ACACAGACTGT----AAGTCAT-----TCAATTTGCCCagatggagggaaaggtttcaaaattcaaatatataaatttttaatt
gi|24                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            gtattcctagatggaCCCGGGCGTATACTCAAGCACTGTCTAGCCAC----GCCCCTG
gi|24                         :                                                                                                                          agggatTTGA-GTATACGCCC-GGGAGA--GGGCGTGGAAAGGTGTTGagagggcgtggaaaggtgttg
gi|25                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    agggatcaggggcgtggctagacagtgcCC-ACGTTCGACTC-T-GAGTTATACGCCCGTGCGTTTA--GGAGTA-TGTCTAGGAACCGCTGCCCCT
gi|3                          :                                                                                                                                   A-GTATACGCCC-GGTGGG--GGGTCTGGGAGTGG-TTGTCCCCCCCCCCCCCCCCCCACCTACTTG--A---GTGA-----GGGG-----------T-CC--TC-TCCCGAG-A------T--TTC-----TTT----TT--AGA-TAGAACT---GCAAATTGGTAGTTTTT---AGCGAA-TTTA------TCTCTAACTGGG---AAGTCAT-----TTAAATGGTCTGA-AATTAGA-CGGGTTT--T-CTATT---TCCTAAAGCACGAACCCCTTACG--T--CA---T-A--T-------ACCC-T---------CCGGCTTCA-TTTTT--ATTGCATT-TTT------------C-GCATTTT-AA-C--CTTT--TTT-A--TTTTTC-ACATTCAACTC-T-AAGTTTTA---CCATGTATATA--GAAGTA-TTTCTAGGAAC----GCCCC
gi|4                          :                                                                                                                   gattgtcttagTTTTGA-GTATATACC--AGTGAA--GGGTGTGTCAGGGG-CTGTCCCCCTCC-------------TACTTGCGG---GGTAT---TGGGGATGTTCGGGGCT-CT--CC-TCC---G-A------G--ATT-----TTT----TT--A-A-TATGACT---GCAAATAAGTTGTTTT----GGCGAC-TTTT------ACACTAACAGTA---AAGTCAT-----TAAAATTGCCCGA-ATTTATA-CGGGTTT--T-CAATT---TCCTAAAGCATGA------T-CC--C--CA---T-A--C-------CCTT-T---------TCGGTTTCATTTTT---ATTGCACT-TTT------------C-GCATTTT-AA-C-TTTTTCTTTT-A--TTTTCC-ACAGTCAACTC-T-GAGTTATACGCCCGGGCGTATA--GGCGTA-TACCTATGAAC----GCCCg
gi|5                          :                                                                                                                  ttcctagatggtTTTTGA-GTGTACGTTT-GGGGGA--TGGTATGGGAGGGGGTTGTCCCCCTCG-------------TTCCTGCGG---GGGAT---TGGGG-----------T-CC--CC-CTC---A-A------T--TTT-----TTT----TT--A-A-CTGAACT---GTAAATTAGTAGTTTTT---AGCGAA-GTTG------ACACGGACTGTA---AAGACAT-----TCAAATTCCCCGA-AATTATA-C---TTTTATTATATT---TCCTTAAGCACGAACCCCTTACC--C--CA---T-A--T-------CCAC-T---------TAGGCTTCATTTTTT--ATTGTA-T-TTT------------C-GCATTTT-AA-CATTTTT--TTT-A--TTTTCC-ACATTCAACTC-T-GATCTATACGCCCGGGCGTATA--TAAGTA-TGCATAGGAAC----ACCTCTG
gi|6                          :                                                                                                                              TTTGGA-GTTAACGTTT-GGGGGA--TGGTGTGGGAGGGGGTTGTCCCCCTCG-------------TTCCTGCGG---GGGAT---TGGGG-----------T-CC--CC-CTC---A-A------T--TTTC----TTT----TT--A-A-TTGAAGT---GCAAATAAGTAGTTTTT---AGCGAA-GTTG------ACACGGACTGTA---AAGACAT-----TCAAATTCCCCGA-AATTATA-C---TTTTATTATATT---TCCTTAAGCACGTACCCCTTACC--C--CA---T-A--C-------CCAC-T---------TAGGCTTCATTTTTT--ATTGTA-T-TTT------------C-GCATTTT-AA-CATTTTT--TTT-A--TTTTCC-ACATTCAACTC-T-GATCTTTACGCCCGGGCGTATA--TAAGTA-TGCATAGGAAC----GCCTCT
gi|7                          :                                                                                                                               TTTTA-GTATACTCCC-GGAG-A--GAGTGTATAAGGGTGTT-TTCCCCTCC-------------TACTTGCAG---TGTGTGTGTGGGG-----------C-CCTTCT-CCT---ATA------T--TTT-----TTTCT--TT--T-A-TAGAACT---GCAAAT-------TTTT---AGCGGC-TTTG------ACATGGACTGTG---AAATCAT-----TCAAATTGCCCGA-AAATATA-CGGG-AT--TTCTGTT---TCCAAAAGCACGAACCCCTTACC--C--GA---T-A--C-------CCC-------------AAGC-ACA-TTTTT--ATTGCA-TCTTT------------T-GCATTAT-AA-C--CGTT--TTC-A--GTTTCC-GTATTCAACTC-T-AAATTATGCGCCCGGGCGTTTA--CGAGTA-TGCCTAGGAAA----GCCCCT
gi|8                          :                                                                                                                      ctataatgTTTTGA-GTATATGCCT--------------TGGGAAGGGGATGGTTCCCT---------------TA-----------GTAT---T---------------T-CT--CC-CAT---G-A------G--GTA-----ATT----TT--A-A-TAGAACT---GCGTATGAGTAATTGT----AG--AC-TTTG------ACATG-ACTGTG---AAGTCAT-----TCAAATTGCCCGA-AATTATA-CGGG-TT--ATCTTTT---TCCTAAAGCACGAGCCTCTTACC--C--TA---T-A--CT------CCAT-T---------TCGGCTTCA-TTTTC--AATGCATT-TTT------------C-GCATTTT-AA-C-TTTTT--TTT-A--TTTTCC-ACATTCAACTC-T-GAGTTATACGCCCAGGCATATA--GGAATA-TGCCTAAGAAC----ACCCCTG
gi|9                          :                                                                                                               gacattattagatgggTTTCA-GTATACGACC-AGGTGA--GGGTGTGGGAGGGGATTG-CCTCCTCA-------------TACTTTTGT---GGGGT---T
gi|9                          :                                                                                                                                                                                                                                                                                           agtcgttcctggatgtttaTTT---AGCGAC-T--G------ACACGGACTGTG---GAGTCAT-----TCAAGTTGCCCGA-AATTATA-CGG--TT--TTCTATT---TCCTAAAGCATGAATTCCTTATC--C--CG---T-A--CACC----CCTC-T---------TTGGCTTCATTTTC---ATTGCA-TATTT------------C-GTATTTT-AA-C-TTTTT--TTT-A--TTTTTCTATCTTCAACTC-T-CAGTAATACGCCCAGGTGTATT--GCAATA-TGCCTAGGAAC----GCCCCTGtagcgactgacacggactgtggagtcattcaagttgcccgaaattatacggttttctatttcctaaagcatgaattccttatcccgtacacccctctttggcttcattttcattgcatatttcgtattttaacttttttttatttttctatcttcaactctcagtaatacgcccaggtgtattgcaatatgcctaggaacgcccctgagtgtggccagttacca

Unaligned ( gi|26 ): CCATTTAAATGTCAGTCTGTAGCTCAAACGTCCCTGACATATA

lowQualScore                  :                                                                                                                                                                                  11111111111111                         22222222222            111111111111111   11111                                                                                                                  11                                                     1111111                        1             1     111111111111              11                                                                                       
lowQualScore                  :                                                                                                                                 1 2         33      33    0         2   33       55555555555555         444   6666666   33333333333 2  88  2   888888888888888   00000   8888  33 2 2       333                 333      1    555555            333       44444             2       2   88  6666     333                       22 333 333 2 22 5555555  666 888888888         5    666      0 6   444444444444 4       2  2 11    22   2 22      2           2 2                      22      2           5555       
lowQualScore                  :                                                                                                                                 . .         ..      ..    .         .   ..       ..............         ...   .......   ........... .  ..  .   ...............   .....   ....  .. . .       ...                 ...      .    ......            ...       .....             .       .   ..  ....     ...                       .. ... ... . .. .......  ... .........         .    ...      . .   ............ .       .  . ..    ..   . ..      .           . .                      ..      .           ....       
lowQualScore                  :                                                                                                                                 0 5         22      22    2         7   66       44444444444444         444   3333333   88888888888 4  88  4   555555555555555   66666   2222  11 2 2       333                 222      9    555555            333       88888             0       1   11  7777     555                       99 888 777 1 99 5555555  333 444444444         6    333      5 3   222222222222 0       0  0 00    99   1 99      0           0 0                      99      1           0000       
consensus                     :                                                                                                                             TTTTNA-GTATACGCCC-GGGGGA--GGGTGTGGGAGGGGGTTGT-CCCCCTCC-------------TACTTGCGG---GGGAT---TGGGG-----------T-CC--CC-CCC---G-A------T--TTT-----TTT----TT--A-A-TAGAACT---GCAAATGAGTAGTTTTT---AGCGAC-TTTG------ACACGGACTGTG---AAGTCAT-----TCAAATTGCCCGA-AATTATA-CGGG-TT--TTCTATT---TCCTAAAGCACGAACCCCTTACC--C--CA---T-A--C-------CCNC-T---------TCGGCTTCATTTTTT--ATTGCA-T-TTT------------C-GCATTTT-AA-C-TTTTT--TTT-A--TTTTCC-ACATTCAACTC-T-GAGTTATACGCCCGGGCGTATA--GGAGTA-TGCCTAGGAAC----GCCCCTG
Reference ( family-2958 )     :                                                                                                                             TTTTNA-GTATACGCCC-GGGGGA--GGGTGTGGGAGGGGGTTGT-CCCCCTCC-------------TACTTGCGG---GGGAT---TGGGG-----------T-CC--CC-CCC---G-A------T--TTT-----TTT----TT--A-A-TAGAACT---GCAAATGAGTAGTTTTT---AGCGAC-TTTG------ACACGGACTGTG---AAGTCAT-----TCAAATTGCCCGA-AATTATA-CGGGTTT--TTCTATT---TCCTAAAGCACGAACCCCTTACC--C--CA---T-A--C-------CCNC-T---------TCGGCTTCATTTTTT--ATTGCA-T-TTT------------C-GCATTTT-AA-C-TTTTT--TTT-A--TTTTCC-ACATTCAACTC-T-GAGTTATACGCCCGGGCGTATA--GGAGTA-TGCCTAGGAAC----GCCCCTG
gi|1                          :                                                                                                                             TTTTTA-GTAAACGCCC-GGG--A--AGGTGTGGGAGGGGGTTGT-CTCTCTCC-------------TCCTTGCGG---GGG-T---TGTGG-----------TGCA--GC-CCC---T-A------T--ATT-----TTT----TT--A-A-TAGAACT---GCAAATGAGAAGTTTTTATCAGAGACATATGTCAACAACACGGACCGTG---AAGCAAT-----TCAAATTGCCGGA-TAGTATA-CGGG-TT--TTCTATT---TCCTACAGCACGAACCCCTTACT--CAACAGGCT-A--C-------TC-C-T---------TCGGCTCCAAATTGT--ATTGCA-T-TTT------------C-GCATGTT-AA-C--CCTT--TAT-A--TTTTCC-ACATTCAACTC-T-CAG-TATA
gi|10                         :                                                                                                              ggcggtcctgtatgtTTTTTA-GTATACACCC-AGGG--------------------TGT-CCACCTTC-------------TACTTGCAG---CAGGT---TGGGAGGAC-------T-CT--CC-CCAAA-G-A------T--TTT-----TTT----CTTAA-A-TAGAACT---GCAAATGAGTAGCTTTT---AGCGAC-TTTG------GCAGGGACTTTG---AAGTCAT-----TCAAACTGCCTGA-AATTATA-TGGGTTT--T-CTATT---TTCTGAAGCATGAACCACTTACC--T--CA---T-A--C-------CCAC-T---------TCGGCTTCATTTTTTTTATTGCA-T-TTTT-----------C-GCATTTT------------------------CC-ACATTCA---------GTTATAGTCCTGGATGTATA--GGAATA-TGCTTAGAAAC----GTCCCTggtgccaaaccgccaaggaacacacctgacttagttatgc
gi|11                         :                                                                                                                                 gcttcctagatgt-GGGGGA--GGG-GTGGGGGGAGG---------------------------------GG---GGAAT------GG-----------T-CA--CC-CGG---G-A------A--TTTA----TTT----TT--A-AATAAAACT---GCGAATGAGTAGTTTTT---AACGAC-TTTG------ACACGGACTGTC---AAGTTAT-----TAAAATTTCCCTA-AATTATA-CGAG-TT--TTCTAAT---TCCTAAAGCACGATCGCC-TACC--C--CA---------------------T---------TCGGCTTCA-TTTTT--ATTGCA-T-TTTC-----------C-GTATTTT-AACC-TTTTT--TTT-A--TTTTCC-ACATTCAACTC-T-GAGTTATACGCCCGCGTGGATA--GGAGAA-TGCCTAGGAAC----ACCCCTG
gi|12                         :                                                                                                                                                                                                                                                              tgtgtttacatggtattT--A-A-TATAACT---GCAAATGGGTAGTTATT---AGCGAC-TTTC------GCA-GGATTGTG---AAGTCAT-----TCATATTGCCTTT-AATCATA-CGGATTT--CT-TAAT---TCCTAAAGCAGAAACTCCTTACC--C---A---T-A--C-------CCCC-TCCCATCTCTTCGGCTTCATTTTTA--ATTGCT-T-TTT------------CCGTATTTT-AA-C-CTATT--TTT-AAGTGTGCA-ACATTCAACTC-T-GAGTTATACGCCAGGGCGTATA--GTAGTA-TGACTAGGAAC----GCCCCTG
gi|13                         :                                                                                                                                                                           ggggcgttccttgatggtttgagtattcaacagggatattgaaGGG-----------T-CCT-CC-CCC---G-AGATTTGT--TTT-----CTT----TT--A---TAGAACT---GCAAGCGAGTAGCTTT----AGCGGC-TT-A------ACACGGATTGTGTCAAAGTCAT-----TTAAATTGCCCAA-AACTGCATCAG--TT--TTCAATT---TTCTAAAGCACGAACAATTTACT--C--TA---TTA--C-------CCCA-T---------TCGGCTTCATTTTCT--ATTGAA-TATTT------------C-GCATTTT-AA-C-CTTTT--TTTCA--TTTTCC-ACATTCAACTC-TTGAGTTACACGCCCGGGCGAACC--GGAGTA-TGCGCAGGAAT----ACCTCTG
gi|14                         :                                                                                                                            tTTTTTG-GTATACACCCCGGGGGA--GGGTATGGGACGGGGTTGTCCCCCCTCG-------------TACTTGC
gi|14                         :                                                                                                                                                                                                                                                                               gttcctagatgatT---GCAAATGAGTAGTTTTT---AATGAC-TTTG------GCACTGACTGTG---AAGTTAT-----TCAAATTGCCCGA-AATTTTA-CGGG-TA--TTCTATC---TTCCAAAGCACTAACCCCTTACC--C--AA---T-AATC-------CCA--T---------TCGGCTTAA--TTTT--ATTACA-T-TTT------------T-GCAGTTG-AA-C-CTATT--TTC-A--TTTTCC-ACATTCAGCTC-A-GAGTAATACGaaatgagtagtttttaatgactttggcactgactgtgaagttattcaaattgcccgaaattttacgggtattctatcttccaaagcactaaccccttacccaataatcccattcggcttaattttattacatttttgcagttgaacctattttcattttccacattcagctcagagtaatacga
gi|15                         :                                                         gttcctagatgattttttggtatacaccccgggggagggtatgggacggggttgtcccccctcgtactTTTTTATGTATACGCCC-GGGAGA--GGGTGTTGGAGGATGTTGT--CCCCTCC-------------TAGTTGCGG---GGGAT---T-GGG-----------T-CC--TC-CCCCGAG-A------T--TTTCTCTCTTTTAAATT--A-A-TAGCACT---GCAAATGAGTAG--TTT---GATAAC-TTTG------ACACGAACTTTA---AAGTCAT-----TAATATTGCCGAA-AATTAa
gi|15                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     attcctagttagTT------------A-GCATTTC-AA-C-CTATT--TTT-A--TTTTTC-ACATTCATTTC-T-GAGTAAT------GGGCGTATA--GGAGCA-TGCCTgcatttcaacctatttttatttttcacattcatttctgagtaatgggcgtataggagcatgcct
gi|16                         : attcctagttagtttttatgtatacgcccgggagagggtgttggaggatgttgtcccctcctagttgcgggggattgggtcctcccccgagattttctctcttttaaattaatagcactgcaaatgagtagtttgataactttgacacgaactttaaagtcattaatattgccgaaaa-------------TACTCCCAG---GGGGA---GGGGG-----------T-CC--TT-CCC---G-A------T--AAT-----TTC----T---A-A-T--------------TGAGTAGTTTTT---AGCGAC-TTTG------AAATGGACTCTT---AAGTCATCATGTTCTAATTGCCCAA-AATTA-----------------------------GCACAGACCTCTTACC--C--CA---T-A--C-------CCCC-T---------CCA----CA------------CA-C-TT-------------C-GCGTTC--AA---TCCTT--TTT-A--T----C-ACTTCCAACTC-T-GAGTTATACATCCGGGCGGGTA--GGAGTA-TGCATAGGAAC----GTCTCT
gi|17                         :                                                                                                                                                                                                                                                                  gggcgttcctagatgatttttgagACT---GCAAGTGAGTAGGTGAT---AACGAC-TTTG------ACACGGACTGTG---CTGTCAT-----TCGAATTACTAAACAATTATA-CGGGTTT--T-CTATT---TCCTAAAGCGTGCACACCTTACA--C-------T-A--CGTTTCCACCAC-T---------TCGTATTCATTTTT---ATTGCA-T-TTT------------CCGCATTTT-GA-----TAT--TTA-A--TTATCC-ACATTCAACTC-T-GCTTTATACGCCCGGACGTATA--GGAGTA-TGTCTAGGAAA----GCCCCT
gi|18                         :                                                                                                                                                                                                                 tttcattG-----------T-CT--TC-TCCTG-A-A------T--TTT-----TTT----TT--A-C-TAGAACT---GCAAATGAGTACTTTTT---AATGAT-TTTG------CCACAGAC--TG---AAGTCAT-----TCAAATTGCCCAA-AATTATA-CGGG-TT--TTCTATT---TCCTAAAGCACAAAC-----------------------C-------CCAC-T---------TTGGCTTCA-TTTTT--ATT-----------------------GCATTTT-AA-C-CTTTT--TTT-A--TTTTCC-ATATTCAGCTC-C-GAGTTATACGCCTGAACATATA--GGAGTA-T
gi|19                         :                                                                                                                           gtTTTTTA-GTATACGTCC-GGAAGA--GGGGGTGGGAGGGTGTTGT-CTCCCATG-------------TACTTGCTG---GG------TGGGGGTGGTTG----T-CC--CCTCCC---A-A------T--TTT-------T----TT--A-A-TAGAACT---GCAAATGAGTAGTTTTT---AGCGAC-TTTG------ACATGGCC--TG---AAGTGTT-----TCAAATTGCCTGA-AATTAAA-AA----T--ATCTTTT---TCCTAAAGt
gi|2                          :                                                                                                                     ttagatgtTTTTTA-GTATACGTCC-GTGGGA--GGGTATGGGAGGGA-TTAC-CCCCCTCG-------------AACTTGCGATGTGGGAG---TAGGG-----------T-CCTTCC-CCC---G-AGA----TCATTT-----TCT----TT--A-A-TAGAACTTCTGTCGTTGAATAGTTTT----AGCGAC-TTTG------ATACGGACTGTG---AGTTCAT-----TTAAATTACCCGA-AAGTATA-CGGG-CT--TTCTATTTCCTCCTAAAGCACGAATCCATTACCAAA--CA---C-A--CTA-----CCAT-T---------TCGGCTTCA-TTTTT--ATTGCATT-TTT------------C-GGATTCT-CA-T-TTTTA--ATT----TTTTCC-ACATTCAACTCTT-GAGTTATACGACCGGGTGTAAA--GGAGTA-TGCCTAGGAAC----GCCCCTtg
gi|20                         :                                                                                                                                                                                                                                                                                 cctagtAGAACT---GCAAATGAGTAGTTTTT---AGTGAC-TTTG------ACAAGGACTGTG---AAGTCAT-----TCAAATTGCTTGA-AATT-T----------------------------GCACGAACCCCTGACC--C--CA---T-A--T-------CCCCAT---------TTGGCTTCA-TTTTT--GTTGCA-T-TTTAACTACTACATAT-GCATTTT-AA-C-Tt
gi|21                         :                                                                                                                                                                                                                                                                                                                                                                                                 CTGTT---TCTTAAAGCATACAGCCCTTATT--C--CA---T-A--C-------CCCC-T---------TCGGCTTCATTTT----ATTGCATT-TTT------------C-ACATTTTAAA-C---TTT--TTT-A--TTTTCC-ACATTCAACTC-T-GAGTTATGCGTCAGGGC----------GTA-TGCCTAGGAAC----ACCCCTGactacatatgcattttaactggacttttccaaactca
gi|22                         :                                                                                     tcatttaaagccgccggaatgtgccgagtcagcaaatataTTTTGA-GCAGGGGCT---GGGGATGGGGT-TGTGAGGTGTTTTT-CCGCCTCC-------------AACTTGCGT---GGG-T---TAGGT-----------C-CT--CC-CCT---G-A------G--ATT-----TCT----TT--A-A-TAGAACT---GCAAATAAGCAG-TTTT---AGC
gi|23                         :                                                                                                                          gcaTTTTGA-GTATACG-----GAGGA--AGATGTGAGAGTGGGTTG--ACTCCTCC-------------TACTTGTGG---GGGAT---T---------------------------------------------------CT----TT--A-A-TTGAACT---GCAAATGAGTAGTCTTT---AGTGAC-TTTG------ACACAGACTGT----AAGTCAT-----TCAATTTGCCCagatggagggaaaggtttcaaaattcaaatatataaatttttaatt
gi|24                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            gtattcctagatggaCCCGGGCGTATACTCAAGCACTGTCTAGCCAC----GCCCCTG
gi|24                         :                                                                                                                         agggatTTGA-GTATACGCCC-GGGAGA--GGGCGTGGAAAGGTGTTGagagggcgtggaaaggtgttg
gi|25                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    agggatcaggggcgtggctagacagtgcCC-ACGTTCGACTC-T-GAGTTATACGCCCGTGCGTTTA--GGAGTA-TGTCTAGGAACCGCTGCCCCT
gi|3                          :                                                                                                                                  A-GTATACGCCC-GGTGGG--GGGTCTGGGAGTGG-TTGT-CCCCCCCCCCCCCCCCCCACCTACTTG--A---GTGA-----GGGG-----------T-CC--TC-TCCCGAG-A------T--TTC-----TTT----TT--AGA-TAGAACT---GCAAATTGGTAGTTTTT---AGCGAA-TTTA------TCTCTAACTGGG---AAGTCAT-----TTAAATGGTCTGA-AATTAGA-CGGGTTT--T-CTATT---TCCTAAAGCACGAACCCCTTACG--T--CA---T-A--T-------ACCC-T---------CCGGCTTCA-TTTTT--ATTGCATT-TTT------------C-GCATTTT-AA-C--CTTT--TTT-A--TTTTTC-ACATTCAACTC-T-AAGTTTTA---CCATGTATATA--GAAGTA-TTTCTAGGAAC----GCCCC
gi|4                          :                                                                                                                  gattgtcttagTTTTGA-GTATATACC--AGTGAA--GGGTGTGTCAGGGG-CTGT-CCCCCTCC-------------TACTTGCGG---GGTAT---TGGGGATGTTCGGGGCT-CT--CC-TCC---G-A------G--ATT-----TTT----TT--A-A-TATGACT---GCAAATAAGTTGTTTT----GGCGAC-TTTT------ACACTAACAGTA---AAGTCAT-----TAAAATTGCCCGA-ATTTATA-CGGGTTT--T-CAATT---TCCTAAAGCATGA------T-CC--C--CA---T-A--C-------CCTT-T---------TCGGTTTCATTTTT---ATTGCACT-TTT------------C-GCATTTT-AA-C-TTTTTCTTTT-A--TTTTCC-ACAGTCAACTC-T-GAGTTATACGCCCGGGCGTATA--GGCGTA-TACCTATGAAC----GCCCg
gi|5                          :                                                                                                                 ttcctagatggtTTTTGA-GTGTACGTTT-GGGGGA--TGGTATGGGAGGGGGTTGT-CCCCCTCG-------------TTCCTGCGG---GGGAT---TGGGG-----------T-CC--CC-CTC---A-A------T--TTT-----TTT----TT--A-A-CTGAACT---GTAAATTAGTAGTTTTT---AGCGAA-GTTG------ACACGGACTGTA---AAGACAT-----TCAAATTCCCCGA-AATTATA-C---TTTTATTATATT---TCCTTAAGCACGAACCCCTTACC--C--CA---T-A--T-------CCAC-T---------TAGGCTTCATTTTTT--ATTGTA-T-TTT------------C-GCATTTT-AA-CATTTTT--TTT-A--TTTTCC-ACATTCAACTC-T-GATCTATACGCCCGGGCGTATA--TAAGTA-TGCATAGGAAC----ACCTCTG
gi|6                          :                                                                                                                             TTTGGA-GTTAACGTTT-GGGGGA--TGGTGTGGGAGGGGGTTGT-CCCCCTCG-------------TTCCTGCGG---GGGAT---TGGGG-----------T-CC--CC-CTC---A-A------T--TTTC----TTT----TT--A-A-TTGAAGT---GCAAATAAGTAGTTTTT---AGCGAA-GTTG------ACACGGACTGTA---AAGACAT-----TCAAATTCCCCGA-AATTATA-C---TTTTATTATATT---TCCTTAAGCACGTACCCCTTACC--C--CA---T-A--C-------CCAC-T---------TAGGCTTCATTTTTT--ATTGTA-T-TTT------------C-GCATTTT-AA-CATTTTT--TTT-A--TTTTCC-ACATTCAACTC-T-GATCTTTACGCCCGGGCGTATA--TAAGTA-TGCATAGGAAC----GCCTCT
gi|7                          :                                                                                                                              TTTTA-GTATACTCCC-GGAG-A--GAGTGTATAAGGGTGTT-T-TCCCCTCC-------------TACTTGCAG---TGTGTGTGTGGGG-----------C-CCTTCT-CCT---ATA------T--TTT-----TTTCT--TT--T-A-TAGAACT---GCAAAT-------TTTT---AGCGGC-TTTG------ACATGGACTGTG---AAATCAT-----TCAAATTGCCCGA-AAATATA-CGGG-AT--TTCTGTT---TCCAAAAGCACGAACCCCTTACC--C--GA---T-A--C-------CCC-------------AAGC-ACA-TTTTT--ATTGCA-TCTTT------------T-GCATTAT-AA-C--CGTT--TTC-A--GTTTCC-GTATTCAACTC-T-AAATTATGCGCCCGGGCGTTTA--CGAGTA-TGCCTAGGAAA----GCCCCT
gi|8                          :                                                                                                                     ctataatgTTTTGA-GTATATGCCT--------------TGGGAAGGGGATGG-TTCCCT---------------TA-----------GTAT---T---------------T-CT--CC-CAT---G-A------G--GTA-----ATT----TT--A-A-TAGAACT---GCGTATGAGTAATTGT----AG--AC-TTTG------ACATG-ACTGTG---AAGTCAT-----TCAAATTGCCCGA-AATTATA-CGGG-TT--ATCTTTT---TCCTAAAGCACGAGCCTCTTACC--C--TA---T-A--CT------CCAT-T---------TCGGCTTCA-TTTTC--AATGCATT-TTT------------C-GCATTTT-AA-C-TTTTT--TTT-A--TTTTCC-ACATTCAACTC-T-GAGTTATACGCCCAGGCATATA--GGAATA-TGCCTAAGAAC----ACCCCTG
gi|9                          :                                                                                                              gacattattagatgggTTTCA-GTATACGACC-AGGTGA--GGGTGTGGGAGGGGATTG--CCTCCTCA-------------TACTTTTGT---GGGGT---T
gi|9                          :                                                                                                                                                                                                                                                                                           agtcgttcctggatgtttaTTT---AGCGAC-T--G------ACACGGACTGTG---GAGTCAT-----TCAAGTTGCCCGA-AATTATA-CGG--TT--TTCTATT---TCCTAAAGCATGAATTCCTTATC--C--CG---T-A--CACC----CCTC-T---------TTGGCTTCATTTTC---ATTGCA-TATTT------------C-GTATTTT-AA-C-TTTTT--TTT-A--TTTTTCTATCTTCAACTC-T-CAGTAATACGCCCAGGTGTATT--GCAATA-TGCCTAGGAAC----GCCCCTGtagcgactgacacggactgtggagtcattcaagttgcccgaaattatacggttttctatttcctaaagcatgaattccttatcccgtacacccctctttggcttcattttcattgcatatttcgtattttaacttttttttatttttctatcttcaactctcagtaatacgcccaggtgtattgcaatatgcctaggaacgcccctgagtgtggccagttacca

Unaligned ( gi|26 ): CCATTTAAATGTCAGTCTGTAGCTCAAACGTCCCTGACATATA

lowQualScore                  :                                                                                                                                                                                  11111111111111                         22222222222            111111111111111   11111                                                                                                                                                                          1111111                        1             1     111111111111            1111                                                                                     
lowQualScore                  :                                                                                                                                 1 2         33      33    0         2   33       55555555555555         444   6666666   33333333333 2  88  2   888888888888888   00000   8888  33 2 2       333                 333      1    555555            333       44444             2        0 0  333    333   333                       22 333 555  22 5555555  666 888888888         5    666      0 6   444444444444 4       2  1111   22     22      2           4                       22      2           5555       
lowQualScore                  :                                                                                                                                 . .         ..      ..    .         .   ..       ..............         ...   .......   ........... .  ..  .   ...............   .....   ....  .. . .       ...                 ...      .    ......            ...       .....             .        . .  ...    ...   ...                       .. ... ...  .. .......  ... .........         .    ...      . .   ............ .       .  ....   ..     ..      .           .                       ..      .           ....       
lowQualScore                  :                                                                                                                                 0 5         22      22    2         7   66       44444444444444         444   3333333   88888888888 4  88  4   555555555555555   66666   2222  11 2 2       333                 222      9    555555            333       88888             0        1 1  777    555   555                       99 888 888  99 5555555  333 444444444         6    333      5 3   222222222222 0       0  2222   99     99      0           0                       99      1           0000       
consensus                     :                                                                                                                             TTTTNA-GTATACGCCC-GGGGGA--GGGTGTGGGAGGGGGTTGT-CCCCCTCC-------------TACTTGCGG---GGGAT---TGGGG-----------T-CC--CC-CCC---G-A------T--TTT-----TTT----TT--A-A-TAGAACT---GCAAATGAGTAGTTTTT---AGCGAC-TTTG------ACACGGACTGTG---AAGTCAT-----TCAAATTGCCCGA-AATTATACGGGTT---TTCT---ATT---TCCTAAAGCACGAACCCCTTACC--C--CA---TA--C-------CCNC-T---------TCGGCTTCATTTTTT--ATTGCA-T-TTT------------C-GCATTTT-AA-C-TTTT--TTTTA--TTTTCC-ACATTCAACTC-TGAGTTATACGCCCGGGCGTATA--GGAGTA-TGCCTAGGAAC----GCCCCTG
Reference ( family-2958 )     :                                                                                                                             TTTTNA-GTATACGCCC-GGGGGA--GGGTGTGGGAGGGGGTTGT-CCCCCTCC-------------TACTTGCGG---GGGAT---TGGGG-----------T-CC--CC-CCC---G-A------T--TTT-----TTT----TT--A-A-TAGAACT---GCAAATGAGTAGTTTTT---AGCGAC-TTTG------ACACGGACTGTG---AAGTCAT-----TCAAATTGCCCGA-AATTATACGGGTT---TTCT---ATT---TCCTAAAGCACGAACCCCTTACC--C--CA---TA--C-------CCNC-T---------TCGGCTTCATTTTTT--ATTGCA-T-TTT------------C-GCATTTT-AA-C-TTTT--TTTTA--TTTTCC-ACATTCAACTC-TGAGTTATACGCCCGGGCGTATA--GGAGTA-TGCCTAGGAAC----GCCCCTG
gi|1                          :                                                                                                                             TTTTTA-GTAAACGCCC-GGG--A--AGGTGTGGGAGGGGGTTGT-CTCTCTCC-------------TCCTTGCGG---GGG-T---TGTGG-----------TGCA--GC-CCC---T-A------T--ATT-----TTT----TT--A-A-TAGAACT---GCAAATGAGAAGTTTTTATCAGAGACATATGTCAACAACACGGACCGTG---AAGCAAT-----TCAAATTGCCGGA-TAGTATACGGGTT---TTCT---ATT---TCCTACAGCACGAACCCCTTACT--CAACAGGCTA--C-------TC-C-T---------TCGGCTCCAAATTGT--ATTGCA-T-TTT------------C-GCATGTT-AA-C--CCT--TTATA--TTTTCC-ACATTCAACTC-TCAG-TATA
gi|10                         :                                                                                                              ggcggtcctgtatgtTTTTTA-GTATACACCC-AGGG--------------------TGT-CCACCTTC-------------TACTTGCAG---CAGGT---TGGGAGGAC-------T-CT--CC-CCAAA-G-A------T--TTT-----TTT----CTTAA-A-TAGAACT---GCAAATGAGTAGCTTTT---AGCGAC-TTTG------GCAGGGACTTTG---AAGTCAT-----TCAAACTGCCTGA-AATTATATGGGTT---TTCT---ATT---TTCTGAAGCATGAACCACTTACC--T--CA---TA--C-------CCAC-T---------TCGGCTTCATTTTTTTTATTGCA-T-TTTT-----------C-GCATTTT-----------------------CC-ACATTCA--------GTTATAGTCCTGGATGTATA--GGAATA-TGCTTAGAAAC----GTCCCTggtgccaaaccgccaaggaacacacctgacttagttatgc
gi|11                         :                                                                                                                                 gcttcctagatgt-GGGGGA--GGG-GTGGGGGGAGG---------------------------------GG---GGAAT------GG-----------T-CA--CC-CGG---G-A------A--TTTA----TTT----TT--A-AATAAAACT---GCGAATGAGTAGTTTTT---AACGAC-TTTG------ACACGGACTGTC---AAGTTAT-----TAAAATTTCCCTA-AATTATACGAGTT---TTCT---AAT---TCCTAAAGCACGATCGCC-TACC--C--CA--------------------T---------TCGGCTTCA-TTTTT--ATTGCA-T-TTTC-----------C-GTATTTT-AACC-TTTT--TTTTA--TTTTCC-ACATTCAACTC-TGAGTTATACGCCCGCGTGGATA--GGAGAA-TGCCTAGGAAC----ACCCCTG
gi|12                         :                                                                                                                                                                                                                                                              tgtgtttacatggtattT--A-A-TATAACT---GCAAATGGGTAGTTATT---AGCGAC-TTTC------GCA-GGATTGTG---AAGTCAT-----TCATATTGCCTTT-AATCATACGGATT---TCTT---AAT---TCCTAAAGCAGAAACTCCTTACC--C---A---TA--C-------CCCC-TCCCATCTCTTCGGCTTCATTTTTA--ATTGCT-T-TTT------------CCGTATTTT-AA-C-CTAT--TTTTAAGTGTGCA-ACATTCAACTC-TGAGTTATACGCCAGGGCGTATA--GTAGTA-TGACTAGGAAC----GCCCCTG
gi|13                         :                                                                                                                                                                           ggggcgttccttgatggtttgagtattcaacagggatattgaaGGG-----------T-CCT-CC-CCC---G-AGATTTGT--TTT-----CTT----TT--A---TAGAACT---GCAAGCGAGTAGCTTT----AGCGGC-TT-A------ACACGGATTGTGTCAAAGTCAT-----TTAAATTGCCCAA-AACTGCATCAGTT---TTCA---ATT---TTCTAAAGCACGAACAATTTACT--C--TAT--TA--C-------CCCA-T---------TCGGCTTCATTTTCT--ATTGAA-TATTT------------C-GCATTTT-AACC-TTTT--TTTCA--TTTTCC-ACATTCAACTCTTGAGTTACACGCCCGGGCGAACC--GGAGTA-TGCGCAGGAAT----ACCTCTG
gi|14                         :                                                                                                                            tTTTTTG-GTATACACCCCGGGGGA--GGGTATGGGACGGGGTTGTCCCCCCTCG-------------TACTTGC
gi|14                         :                                                                                                                                                                                                                                                                               gttcctagatgatT---GCAAATGAGTAGTTTTT---AATGAC-TTTG------GCACTGACTGTG---AAGTTAT-----TCAAATTGCCCGA-AATTTTACGGGTA---TTCT---ATC---TTCCAAAGCACTAACCCCTTACC--C--AA---TAATC-------CCA--T---------TCGGCTTAA--TTTT--ATTACA-T-TTT------------T-GCAGTTG-AA-C-CTAT--TTTCA--TTTTCC-ACATTCAGCTC-AGAGTAATACGaaatgagtagtttttaatgactttggcactgactgtgaagttattcaaattgcccgaaattttacgggtattctatcttccaaagcactaaccccttacccaataatcccattcggcttaattttattacatttttgcagttgaacctattttcattttccacattcagctcagagtaatacga
gi|15                         :                                                         gttcctagatgattttttggtatacaccccgggggagggtatgggacggggttgtcccccctcgtactTTTTTATGTATACGCCC-GGGAGA--GGGTGTTGGAGGATGTTGT--CCCCTCC-------------TAGTTGCGG---GGGAT---T-GGG-----------T-CC--TC-CCCCGAG-A------T--TTTCTCTCTTTTAAATT--A-A-TAGCACT---GCAAATGAGTAG--TTT---GATAAC-TTTG------ACACGAACTTTA---AAGTCAT-----TAATATTGCCGAA-AATTAa
gi|15                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      attcctagttagTT------------A-GCATTTC-AA-C-CTAT--TTTTA--TTTTTC-ACATTCATTTC-TGAGTAAT------GGGCGTATA--GGAGCA-TGCCTgcatttcaacctatttttatttttcacattcatttctgagtaatgggcgtataggagcatgcct
gi|16                         : attcctagttagtttttatgtatacgcccgggagagggtgttggaggatgttgtcccctcctagttgcgggggattgggtcctcccccgagattttctctcttttaaattaatagcactgcaaatgagtagtttgataactttgacacgaactttaaagtcattaatattgccgaaaa-------------TACTCCCAG---GGGGA---GGGGG-----------T-CC--TT-CCC---G-A------T--AAT-----TTC----T---A-A-T--------------TGAGTAGTTTTT---AGCGAC-TTTG------AAATGGACTCTT---AAGTCATCATGTTCTAATTGCCCAA-AATTA-------------------------------GCACAGACCTCTTACC--C--CA---TA--C-------CCCC-T---------CCA----CA------------CA-C-TT-------------C-GCGTTC--AA---TCCT--TTTTA--T----C-ACTTCCAACTC-TGAGTTATACATCCGGGCGGGTA--GGAGTA-TGCATAGGAAC----GTCTCT
gi|17                         :                                                                                                                                                                                                                                                                  gggcgttcctagatgatttttgagACT---GCAAGTGAGTAGGTGAT---AACGAC-TTTG------ACACGGACTGTG---CTGTCAT-----TCGAATTACTAAACAATTATACGGGTT---TTCT---ATT---TCCTAAAGCGTGCACACCTTACA--C-------TA--CGTTTCCACCAC-T---------TCGTATTCATTTTT---ATTGCA-T-TTT------------CCGCATTTT-GA-----TA--TTTAA--TTATCC-ACATTCAACTC-TGCTTTATACGCCCGGACGTATA--GGAGTA-TGTCTAGGAAA----GCCCCT
gi|18                         :                                                                                                                                                                                                                 tttcattG-----------T-CT--TC-TCCTG-A-A------T--TTT-----TTT----TT--A-C-TAGAACT---GCAAATGAGTACTTTTT---AATGAT-TTTG------CCACAGACTG-----AAGTCAT-----TCAAATTGCCCAA-AATTATACGGGTT---TTCT---ATT---TCCTAAAGCACAAACCCC-----------------------------AC-T---------TTGGCTTCATTTTT--------A-T-T----------------GCATTTT-AA-C-CTTT--TTTTA--TTTTCC-ATATTCAGCTC-CGAGTTATACGCCTGAACATATA--GGAGTA-T
gi|19                         :                                                                                                                           gtTTTTTA-GTATACGTCC-GGAAGA--GGGGGTGGGAGGGTGTTGT-CTCCCATG-------------TACTTGCTG---GG------TGGGGGTGGTTG----T-CC--CCTCCC---A-A------T--TTT-------T----TT--A-A-TAGAACT---GCAAATGAGTAGTTTTT---AGCGAC-TTTG------ACATGGCC--TG---AAGTGTT-----TCAAATTGCCTGA-AATTAAAAA---T---ATCT---TTT---TCCTAAAGt
gi|2                          :                                                                                                                     ttagatgtTTTTTA-GTATACGTCC-GTGGGA--GGGTATGGGAGGGA-TTAC-CCCCCTCG-------------AACTTGCGATGTGGGAG---TAGGG-----------T-CCTTCC-CCC---G-AGA----TCATTT-----TCT----TT--A-A-TAGAACTTCTGTCGTTGAATAGTTTT----AGCGAC-TTTG------ATACGGACTGTG---AGTTCAT-----TTAAATTACCCGA-AAGTATACGGGCT---TTCT---ATTTCCTCCTAAAGCACGAATCCATTACCAAA--CA---CA--CTA-----CCAT-T---------TCGGCTTCA-TTTTT--ATTGCATT-TTT------------C-GGATTCT-CA-T-TTTT--AATT---TTTTCC-ACATTCAACTCTTGAGTTATACGACCGGGTGTAAA--GGAGTA-TGCCTAGGAAC----GCCCCTtg
gi|20                         :                                                                                                                                                                                                                                                                                 cctagtAGAACT---GCAAATGAGTAGTTTTT---AGTGAC-TTTG------ACAAGGACTGTG---AAGTCAT-----TCAAATTGCTTGA-AATT-T------------------------------GCACGAACCCCTGACC--C--CA---TA--T-------CCCCAT---------TTGGCTTCA-TTTTT--GTTGCA-T-TTTAACTACTACATAT-GCATTTT-AA-C-Tt
gi|21                         :                                                                                                                                                                                                                                                                                                                                                                                                CT---GTT---TCTTAAAGCATACAGCCCTTATT--C--CA---TA--C-------CCCC-T---------TCGGCTTCATTTT----ATTGCATT-TTT------------C-ACATTTTAAA-C---TT--TTTTA--TTTTCC-ACATTCAACTC-TGAGTTATGCGTCAGGGC----------GTA-TGCCTAGGAAC----ACCCCTGactacatatgcattttaactggacttttccaaactca
gi|22                         :                                                                                     tcatttaaagccgccggaatgtgccgagtcagcaaatataTTTTGA-GCAGGGGCT---GGGGATGGGGT-TGTGAGGTGTTTTT-CCGCCTCC-------------AACTTGCGT---GGG-T---TAGGT-----------C-CT--CC-CCT---G-A------G--ATT-----TCT----TT--A-A-TAGAACT---GCAAATAAGCAG-TTTT---AGC
gi|23                         :                                                                                                                          gcaTTTTGA-GTATACG-----GAGGA--AGATGTGAGAGTGGGTTG--ACTCCTCC-------------TACTTGTGG---GGGAT---T---------------------------------------------------CT----TT--A-A-TTGAACT---GCAAATGAGTAGTCTTT---AGTGAC-TTTG------ACACAGACTGT----AAGTCAT-----TCAATTTGCCCagatggagggaaaggtttcaaaattcaaatatataaatttttaatt
gi|24                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           gtattcctagatggaCCCGGGCGTATACTCAAGCACTGTCTAGCCAC----GCCCCTG
gi|24                         :                                                                                                                         agggatTTGA-GTATACGCCC-GGGAGA--GGGCGTGGAAAGGTGTTGagagggcgtggaaaggtgttg
gi|25                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    agggatcaggggcgtggctagacagtgcCC-ACGTTCGACTC-TGAGTTATACGCCCGTGCGTTTA--GGAGTA-TGTCTAGGAACCGCTGCCCCT
gi|3                          :                                                                                                                                  A-GTATACGCCC-GGTGGG--GGGTCTGGGAGTGG-TTGT-CCCCCCCCCCCCCCCCCCACCTACTTG--A---GTGA-----GGGG-----------T-CC--TC-TCCCGAG-A------T--TTC-----TTT----TT--AGA-TAGAACT---GCAAATTGGTAGTTTTT---AGCGAA-TTTA------TCTCTAACTGGG---AAGTCAT-----TTAAATGGTCTGA-AATTAGACGGGTT---TTCT---ATT---TCCTAAAGCACGAACCCCTTACG--T--CA---TA--T-------ACCC-T---------CCGGCTTCA-TTTTT--ATTGCATT-TTT------------C-GCATTTT-AA-C--CTT--TTTTA--TTTTTC-ACATTCAACTC-TAAGTTTTA---CCATGTATATA--GAAGTA-TTTCTAGGAAC----GCCCC
gi|4                          :                                                                                                                  gattgtcttagTTTTGA-GTATATACC--AGTGAA--GGGTGTGTCAGGGG-CTGT-CCCCCTCC-------------TACTTGCGG---GGTAT---TGGGGATGTTCGGGGCT-CT--CC-TCC---G-A------G--ATT-----TTT----TT--A-A-TATGACT---GCAAATAAGTTGTTTT----GGCGAC-TTTT------ACACTAACAGTA---AAGTCAT-----TAAAATTGCCCGA-ATTTATACGGGTT---TTCA---ATT---TCCTAAAGCATGA-----T--CC--C--CA---TA--C-------CCTT-T---------TCGGTTTCA-TTTTT--ATTGCACT-TTT------------C-GCATTTT-AA-C-TTTTTCTTTTA--TTTTCC-ACAGTCAACTC-TGAGTTATACGCCCGGGCGTATA--GGCGTA-TACCTATGAAC----GCCCg
gi|5                          :                                                                                                                 ttcctagatggtTTTTGA-GTGTACGTTT-GGGGGA--TGGTATGGGAGGGGGTTGT-CCCCCTCG-------------TTCCTGCGG---GGGAT---TGGGG-----------T-CC--CC-CTC---A-A------T--TTT-----TTT----TT--A-A-CTGAACT---GTAAATTAGTAGTTTTT---AGCGAA-GTTG------ACACGGACTGTA---AAGACAT-----TCAAATTCCCCGA-AATTATAC---TTTTATTAT---ATT---TCCTTAAGCACGAACCCCTTACC--C--CA---TA--T-------CCAC-T---------TAGGCTTCATTTTTT--ATTGTA-T-TTT------------C-GCATTTT-AA-CATTTT--TTTTA--TTTTCC-ACATTCAACTC-TGATCTATACGCCCGGGCGTATA--TAAGTA-TGCATAGGAAC----ACCTCTG
gi|6                          :                                                                                                                             TTTGGA-GTTAACGTTT-GGGGGA--TGGTGTGGGAGGGGGTTGT-CCCCCTCG-------------TTCCTGCGG---GGGAT---TGGGG-----------T-CC--CC-CTC---A-A------T--TTTC----TTT----TT--A-A-TTGAAGT---GCAAATAAGTAGTTTTT---AGCGAA-GTTG------ACACGGACTGTA---AAGACAT-----TCAAATTCCCCGA-AATTATAC---TT---TTATTATATT---TCCTTAAGCACGTACCCCTTACC--C--CA---TA--C-------CCAC-T---------TAGGCTTCATTTTTT--ATTGTA-T-TTT------------C-GCATTTT-AA-CATTTT--TTTTA--TTTTCC-ACATTCAACTC-TGATCTTTACGCCCGGGCGTATA--TAAGTA-TGCATAGGAAC----GCCTCT
gi|7                          :                                                                                                                              TTTTA-GTATACTCCC-GGAG-A--GAGTGTATAAGGGTGTT-T-TCCCCTCC-------------TACTTGCAG---TGTGTGTGTGGGG-----------C-CCTTCT-CCT---ATA------T--TTT-----TTTCT--TT--T-A-TAGAACT---GCAAAT-------TTTT---AGCGGC-TTTG------ACATGGACTGTG---AAATCAT-----TCAAATTGCCCGA-AAATATACGGGAT---TTCT---GTT---TCCAAAAGCACGAACCCCTTACC--C--GA---TA--C-------CCC-------------AAGC-ACA-TTTTT--ATTGCA-TCTTT------------T-GCATTAT-AA-C--CGT--TTTCA--GTTTCC-GTATTCAACTC-TAAATTATGCGCCCGGGCGTTTA--CGAGTA-TGCCTAGGAAA----GCCCCT
gi|8                          :                                                                                                                     ctataatgTTTTGA-GTATATGCCT--------------TGGGAAGGGGATGG-TTCCCT---------------TA-----------GTAT---T---------------T-CT--CC-CAT---G-A------G--GTA-----ATT----TT--A-A-TAGAACT---GCGTATGAGTAATTGT----AG--AC-TTTG------ACATG-ACTGTG---AAGTCAT-----TCAAATTGCCCGA-AATTATACGGGTT---ATCT---TTT---TCCTAAAGCACGAGCCTCTTACC--C--TA---TA--CT------CCAT-T---------TCGGCTTCA-TTTTC--AATGCATT-TTT------------C-GCATTTT-AA-C-TTTT--TTTTA--TTTTCC-ACATTCAACTC-TGAGTTATACGCCCAGGCATATA--GGAATA-TGCCTAAGAAC----ACCCCTG
gi|9                          :                                                                                                              gacattattagatgggTTTCA-GTATACGACC-AGGTGA--GGGTGTGGGAGGGGATTG--CCTCCTCA-------------TACTTTTGT---GGGGT---T
gi|9                          :                                                                                                                                                                                                                                                                                           agtcgttcctggatgtttaTTT---AGCGAC-T--G------ACACGGACTGTG---GAGTCAT-----TCAAGTTGCCCGA-AATTATACGG-TT---TTCT---ATT---TCCTAAAGCATGAATTCCTTATC--C--CG---TA--CACC----CCTC-T---------TTGGCTTCATTTTC---ATTGCA-TATTT------------C-GTATTTT-AA-C-TTTT--TTTTA--TTTTTCTATCTTCAACTC-TCAGTAATACGCCCAGGTGTATT--GCAATA-TGCCTAGGAAC----GCCCCTGtagcgactgacacggactgtggagtcattcaagttgcccgaaattatacggttttctatttcctaaagcatgaattccttatcccgtacacccctctttggcttcattttcattgcatatttcgtattttaacttttttttatttttctatcttcaactctcagtaatacgcccaggtgtattgcaatatgcctaggaacgcccctgagtgtggccagttacca

Unaligned ( gi|26 ): CCATTTAAATGTCAGTCTGTAGCTCAAACGTCCCTGACATATA

lowQualScore                  :                                                                                                                                                                                  11111111111111                         22222222222            111111111111111   11111                                                                                                                                                                          1111111                        1             1     111111111111            1111                                                                                     
lowQualScore                  :                                                                                                                                 1 2         33      33    0         2   33       55555555555555         444   6666666   33333333333 2  88  2   888888888888888   00000   8888  33 2 2       333                 333      1    555555            333       44444             2        0 0  333    333   333                       22 333 555  22 5555555  666 888888888         5    666      0 6   444444444444 4       2  1111   22     22      2           4                       22      2           5555       
lowQualScore                  :                                                                                                                                 . .         ..      ..    .         .   ..       ..............         ...   .......   ........... .  ..  .   ...............   .....   ....  .. . .       ...                 ...      .    ......            ...       .....             .        . .  ...    ...   ...                       .. ... ...  .. .......  ... .........         .    ...      . .   ............ .       .  ....   ..     ..      .           .                       ..      .           ....       
lowQualScore                  :                                                                                                                                 0 5         22      22    2         7   66       44444444444444         444   3333333   88888888888 4  88  4   555555555555555   66666   2222  11 2 2       333                 222      9    555555            333       88888             0        1 1  777    555   555                       99 888 888  99 5555555  333 444444444         6    333      5 3   222222222222 0       0  2222   99     99      0           0                       99      1           0000       
consensus                     :                                                                                                                             TTTTNA-GTATACGCCC-GGGGGA--GGGTGTGGGAGGGGGTTGT-CCCCCTCC-------------TACTTGCGG---GGGAT---TGGGG-----------T-CC--CC-CCC---G-A------T--TTT-----TTT----TT--A-A-TAGAACT---GCAAATGAGTAGTTTTT---AGCGAC-TTTG------ACACGGACTGTG---AAGTCAT-----TCAAATTGCCCGA-AATTATACGGGTT---TTCT---ATT---TCCTAAAGCACGAACCCCTTACC--C--CA---TA--C-------CCNC-T---------TCGGCTTCATTTTTT--ATTGCA-T-TTT------------C-GCATTTT-AA-C-TTTT--TTTTA--TTTTCC-ACATTCAACTC-TGAGTTATACGCCCGGGCGTATA--GGAGTA-TGCCTAGGAAC----GCCCCTG
Reference ( family-2958 )     :                                                                                                                             TTTTNA-GTATACGCCC-GGGGGA--GGGTGTGGGAGGGGGTTGT-CCCCCTCC-------------TACTTGCGG---GGGAT---TGGGG-----------T-CC--CC-CCC---G-A------T--TTT-----TTT----TT--A-A-TAGAACT---GCAAATGAGTAGTTTTT---AGCGAC-TTTG------ACACGGACTGTG---AAGTCAT-----TCAAATTGCCCGA-AATTATACGGGTT---TTCT---ATT---TCCTAAAGCACGAACCCCTTACC--C--CA---TA--C-------CCNC-T---------TCGGCTTCATTTTTT--ATTGCA-T-TTT------------C-GCATTTT-AA-C-TTTT--TTTTA--TTTTCC-ACATTCAACTC-TGAGTTATACGCCCGGGCGTATA--GGAGTA-TGCCTAGGAAC----GCCCCTG
gi|1                          :                                                                                                                             TTTTTA-GTAAACGCCC-GGG--A--AGGTGTGGGAGGGGGTTGT-CTCTCTCC-------------TCCTTGCGG---GGG-T---TGTGG-----------TGCA--GC-CCC---T-A------T--ATT-----TTT----TT--A-A-TAGAACT---GCAAATGAGAAGTTTTTATCAGAGACATATGTCAACAACACGGACCGTG---AAGCAAT-----TCAAATTGCCGGA-TAGTATACGGGTT---TTCT---ATT---TCCTACAGCACGAACCCCTTACT--CAACAGGCTA--C-------TC-C-T---------TCGGCTCCAAATTGT--ATTGCA-T-TTT------------C-GCATGTT-AA-C--CCT--TTATA--TTTTCC-ACATTCAACTC-TCAG-TATA
gi|10                         :                                                                                                              ggcggtcctgtatgtTTTTTA-GTATACACCC-AGGG--------------------TGT-CCACCTTC-------------TACTTGCAG---CAGGT---TGGGAGGAC-------T-CT--CC-CCAAA-G-A------T--TTT-----TTT----CTTAA-A-TAGAACT---GCAAATGAGTAGCTTTT---AGCGAC-TTTG------GCAGGGACTTTG---AAGTCAT-----TCAAACTGCCTGA-AATTATATGGGTT---TTCT---ATT---TTCTGAAGCATGAACCACTTACC--T--CA---TA--C-------CCAC-T---------TCGGCTTCATTTTTTTTATTGCA-T-TTTT-----------C-GCATTTT-----------------------CC-ACATTCA--------GTTATAGTCCTGGATGTATA--GGAATA-TGCTTAGAAAC----GTCCCTggtgccaaaccgccaaggaacacacctgacttagttatgc
gi|11                         :                                                                                                                                 gcttcctagatgt-GGGGGA--GGG-GTGGGGGGAGG---------------------------------GG---GGAAT------GG-----------T-CA--CC-CGG---G-A------A--TTTA----TTT----TT--A-AATAAAACT---GCGAATGAGTAGTTTTT---AACGAC-TTTG------ACACGGACTGTC---AAGTTAT-----TAAAATTTCCCTA-AATTATACGAGTT---TTCT---AAT---TCCTAAAGCACGATCGCC-TACC--C--CA--------------------T---------TCGGCTTCA-TTTTT--ATTGCA-T-TTTC-----------C-GTATTTT-AACC-TTTT--TTTTA--TTTTCC-ACATTCAACTC-TGAGTTATACGCCCGCGTGGATA--GGAGAA-TGCCTAGGAAC----ACCCCTG
gi|12                         :                                                                                                                                                                                                                                                              tgtgtttacatggtattT--A-A-TATAACT---GCAAATGGGTAGTTATT---AGCGAC-TTTC------GCA-GGATTGTG---AAGTCAT-----TCATATTGCCTTT-AATCATACGGATT---TCTT---AAT---TCCTAAAGCAGAAACTCCTTACC--C---A---TA--C-------CCCC-TCCCATCTCTTCGGCTTCATTTTTA--ATTGCT-T-TTT------------CCGTATTTT-AA-C-CTAT--TTTTAAGTGTGCA-ACATTCAACTC-TGAGTTATACGCCAGGGCGTATA--GTAGTA-TGACTAGGAAC----GCCCCTG
gi|13                         :                                                                                                                                                                           ggggcgttccttgatggtttgagtattcaacagggatattgaaGGG-----------T-CCT-CC-CCC---G-AGATTTGT--TTT-----CTT----TT--A---TAGAACT---GCAAGCGAGTAGCTTT----AGCGGC-TT-A------ACACGGATTGTGTCAAAGTCAT-----TTAAATTGCCCAA-AACTGCATCAGTT---TTCA---ATT---TTCTAAAGCACGAACAATTTACT--C--TAT--TA--C-------CCCA-T---------TCGGCTTCATTTTCT--ATTGAA-TATTT------------C-GCATTTT-AACC-TTTT--TTTCA--TTTTCC-ACATTCAACTCTTGAGTTACACGCCCGGGCGAACC--GGAGTA-TGCGCAGGAAT----ACCTCTG
gi|14                         :                                                                                                                            tTTTTTG-GTATACACCCCGGGGGA--GGGTATGGGACGGGGTTGTCCCCCCTCG-------------TACTTGC
gi|14                         :                                                                                                                                                                                                                                                                               gttcctagatgatT---GCAAATGAGTAGTTTTT---AATGAC-TTTG------GCACTGACTGTG---AAGTTAT-----TCAAATTGCCCGA-AATTTTACGGGTA---TTCT---ATC---TTCCAAAGCACTAACCCCTTACC--C--AA---TAATC-------CCA--T---------TCGGCTTAA--TTTT--ATTACA-T-TTT------------T-GCAGTTG-AA-C-CTAT--TTTCA--TTTTCC-ACATTCAGCTC-AGAGTAATACGaaatgagtagtttttaatgactttggcactgactgtgaagttattcaaattgcccgaaattttacgggtattctatcttccaaagcactaaccccttacccaataatcccattcggcttaattttattacatttttgcagttgaacctattttcattttccacattcagctcagagtaatacga
gi|15                         :                                                         gttcctagatgattttttggtatacaccccgggggagggtatgggacggggttgtcccccctcgtactTTTTTATGTATACGCCC-GGGAGA--GGGTGTTGGAGGATGTTGT--CCCCTCC-------------TAGTTGCGG---GGGAT---T-GGG-----------T-CC--TC-CCCCGAG-A------T--TTTCTCTCTTTTAAATT--A-A-TAGCACT---GCAAATGAGTAG--TTT---GATAAC-TTTG------ACACGAACTTTA---AAGTCAT-----TAATATTGCCGAA-AATTAa
gi|15                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      attcctagttagTT------------A-GCATTTC-AA-C-CTAT--TTTTA--TTTTTC-ACATTCATTTC-TGAGTAAT------GGGCGTATA--GGAGCA-TGCCTgcatttcaacctatttttatttttcacattcatttctgagtaatgggcgtataggagcatgcct
gi|16                         : attcctagttagtttttatgtatacgcccgggagagggtgttggaggatgttgtcccctcctagttgcgggggattgggtcctcccccgagattttctctcttttaaattaatagcactgcaaatgagtagtttgataactttgacacgaactttaaagtcattaatattgccgaaaa-------------TACTCCCAG---GGGGA---GGGGG-----------T-CC--TT-CCC---G-A------T--AAT-----TTC----T---A-A-T--------------TGAGTAGTTTTT---AGCGAC-TTTG------AAATGGACTCTT---AAGTCATCATGTTCTAATTGCCCAA-AATTA-------------------------------GCACAGACCTCTTACC--C--CA---TA--C-------CCCC-T---------CCA----CA------------CA-C-TT-------------C-GCGTTC--AA---TCCT--TTTTA--T----C-ACTTCCAACTC-TGAGTTATACATCCGGGCGGGTA--GGAGTA-TGCATAGGAAC----GTCTCT
gi|17                         :                                                                                                                                                                                                                                                                  gggcgttcctagatgatttttgagACT---GCAAGTGAGTAGGTGAT---AACGAC-TTTG------ACACGGACTGTG---CTGTCAT-----TCGAATTACTAAACAATTATACGGGTT---TTCT---ATT---TCCTAAAGCGTGCACACCTTACA--C-------TA--CGTTTCCACCAC-T---------TCGTATTCATTTTT---ATTGCA-T-TTT------------CCGCATTTT-GA-----TA--TTTAA--TTATCC-ACATTCAACTC-TGCTTTATACGCCCGGACGTATA--GGAGTA-TGTCTAGGAAA----GCCCCT
gi|18                         :                                                                                                                                                                                                                 tttcattG-----------T-CT--TC-TCCTG-A-A------T--TTT-----TTT----TT--A-C-TAGAACT---GCAAATGAGTACTTTTT---AATGAT-TTTG------CCACAGACTG-----AAGTCAT-----TCAAATTGCCCAA-AATTATACGGGTT---TTCT---ATT---TCCTAAAGCACAAACCCC-----------------------------AC-T---------TTGGCTTCATTTTT--------A-T-T----------------GCATTTT-AA-C-CTTT--TTTTA--TTTTCC-ATATTCAGCTC-CGAGTTATACGCCTGAACATATA--GGAGTA-T
gi|19                         :                                                                                                                           gtTTTTTA-GTATACGTCC-GGAAGA--GGGGGTGGGAGGGTGTTGT-CTCCCATG-------------TACTTGCTG---GG------TGGGGGTGGTTG----T-CC--CCTCCC---A-A------T--TTT-------T----TT--A-A-TAGAACT---GCAAATGAGTAGTTTTT---AGCGAC-TTTG------ACATGGCC--TG---AAGTGTT-----TCAAATTGCCTGA-AATTAAAAA---T---ATCT---TTT---TCCTAAAGt
gi|2                          :                                                                                                                     ttagatgtTTTTTA-GTATACGTCC-GTGGGA--GGGTATGGGAGGGA-TTAC-CCCCCTCG-------------AACTTGCGATGTGGGAG---TAGGG-----------T-CCTTCC-CCC---G-AGA----TCATTT-----TCT----TT--A-A-TAGAACTTCTGTCGTTGAATAGTTTT----AGCGAC-TTTG------ATACGGACTGTG---AGTTCAT-----TTAAATTACCCGA-AAGTATACGGGCT---TTCT---ATTTCCTCCTAAAGCACGAATCCATTACCAAA--CA---CA--CTA-----CCAT-T---------TCGGCTTCA-TTTTT--ATTGCATT-TTT------------C-GGATTCT-CA-T-TTTT--AATT---TTTTCC-ACATTCAACTCTTGAGTTATACGACCGGGTGTAAA--GGAGTA-TGCCTAGGAAC----GCCCCTtg
gi|20                         :                                                                                                                                                                                                                                                                                 cctagtAGAACT---GCAAATGAGTAGTTTTT---AGTGAC-TTTG------ACAAGGACTGTG---AAGTCAT-----TCAAATTGCTTGA-AATT-T------------------------------GCACGAACCCCTGACC--C--CA---TA--T-------CCCCAT---------TTGGCTTCA-TTTTT--GTTGCA-T-TTTAACTACTACATAT-GCATTTT-AA-C-Tt
gi|21                         :                                                                                                                                                                                                                                                                                                                                                                                                CT---GTT---TCTTAAAGCATACAGCCCTTATT--C--CA---TA--C-------CCCC-T---------TCGGCTTCATTTT----ATTGCATT-TTT------------C-ACATTTTAAA-C---TT--TTTTA--TTTTCC-ACATTCAACTC-TGAGTTATGCGTCAGGGC----------GTA-TGCCTAGGAAC----ACCCCTGactacatatgcattttaactggacttttccaaactca
gi|22                         :                                                                                     tcatttaaagccgccggaatgtgccgagtcagcaaatataTTTTGA-GCAGGGGCT---GGGGATGGGGT-TGTGAGGTGTTTTT-CCGCCTCC-------------AACTTGCGT---GGG-T---TAGGT-----------C-CT--CC-CCT---G-A------G--ATT-----TCT----TT--A-A-TAGAACT---GCAAATAAGCAG-TTTT---AGC
gi|23                         :                                                                                                                          gcaTTTTGA-GTATACG-----GAGGA--AGATGTGAGAGTGGGTTG--ACTCCTCC-------------TACTTGTGG---GGGAT---T---------------------------------------------------CT----TT--A-A-TTGAACT---GCAAATGAGTAGTCTTT---AGTGAC-TTTG------ACACAGACTGT----AAGTCAT-----TCAATTTGCCCagatggagggaaaggtttcaaaattcaaatatataaatttttaatt
gi|24                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           gtattcctagatggaCCCGGGCGTATACTCAAGCACTGTCTAGCCAC----GCCCCTG
gi|24                         :                                                                                                                         agggatTTGA-GTATACGCCC-GGGAGA--GGGCGTGGAAAGGTGTTGagagggcgtggaaaggtgttg
gi|25                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    agggatcaggggcgtggctagacagtgcCC-ACGTTCGACTC-TGAGTTATACGCCCGTGCGTTTA--GGAGTA-TGTCTAGGAACCGCTGCCCCT
gi|3                          :                                                                                                                                  A-GTATACGCCC-GGTGGG--GGGTCTGGGAGTGG-TTGT-CCCCCCCCCCCCCCCCCCACCTACTTG--A---GTGA-----GGGG-----------T-CC--TC-TCCCGAG-A------T--TTC-----TTT----TT--AGA-TAGAACT---GCAAATTGGTAGTTTTT---AGCGAA-TTTA------TCTCTAACTGGG---AAGTCAT-----TTAAATGGTCTGA-AATTAGACGGGTT---TTCT---ATT---TCCTAAAGCACGAACCCCTTACG--T--CA---TA--T-------ACCC-T---------CCGGCTTCA-TTTTT--ATTGCATT-TTT------------C-GCATTTT-AA-C--CTT--TTTTA--TTTTTC-ACATTCAACTC-TAAGTTTTA---CCATGTATATA--GAAGTA-TTTCTAGGAAC----GCCCC
gi|4                          :                                                                                                                  gattgtcttagTTTTGA-GTATATACC--AGTGAA--GGGTGTGTCAGGGG-CTGT-CCCCCTCC-------------TACTTGCGG---GGTAT---TGGGGATGTTCGGGGCT-CT--CC-TCC---G-A------G--ATT-----TTT----TT--A-A-TATGACT---GCAAATAAGTTGTTTT----GGCGAC-TTTT------ACACTAACAGTA---AAGTCAT-----TAAAATTGCCCGA-ATTTATACGGGTT---TTCA---ATT---TCCTAAAGCATGA-----T--CC--C--CA---TA--C-------CCTT-T---------TCGGTTTCA-TTTTT--ATTGCACT-TTT------------C-GCATTTT-AA-C-TTTTTCTTTTA--TTTTCC-ACAGTCAACTC-TGAGTTATACGCCCGGGCGTATA--GGCGTA-TACCTATGAAC----GCCCg
gi|5                          :                                                                                                                 ttcctagatggtTTTTGA-GTGTACGTTT-GGGGGA--TGGTATGGGAGGGGGTTGT-CCCCCTCG-------------TTCCTGCGG---GGGAT---TGGGG-----------T-CC--CC-CTC---A-A------T--TTT-----TTT----TT--A-A-CTGAACT---GTAAATTAGTAGTTTTT---AGCGAA-GTTG------ACACGGACTGTA---AAGACAT-----TCAAATTCCCCGA-AATTATAC---TTTTATTAT---ATT---TCCTTAAGCACGAACCCCTTACC--C--CA---TA--T-------CCAC-T---------TAGGCTTCATTTTTT--ATTGTA-T-TTT------------C-GCATTTT-AA-CATTTT--TTTTA--TTTTCC-ACATTCAACTC-TGATCTATACGCCCGGGCGTATA--TAAGTA-TGCATAGGAAC----ACCTCTG
gi|6                          :                                                                                                                             TTTGGA-GTTAACGTTT-GGGGGA--TGGTGTGGGAGGGGGTTGT-CCCCCTCG-------------TTCCTGCGG---GGGAT---TGGGG-----------T-CC--CC-CTC---A-A------T--TTTC----TTT----TT--A-A-TTGAAGT---GCAAATAAGTAGTTTTT---AGCGAA-GTTG------ACACGGACTGTA---AAGACAT-----TCAAATTCCCCGA-AATTATAC---TT---TTATTATATT---TCCTTAAGCACGTACCCCTTACC--C--CA---TA--C-------CCAC-T---------TAGGCTTCATTTTTT--ATTGTA-T-TTT------------C-GCATTTT-AA-CATTTT--TTTTA--TTTTCC-ACATTCAACTC-TGATCTTTACGCCCGGGCGTATA--TAAGTA-TGCATAGGAAC----GCCTCT
gi|7                          :                                                                                                                              TTTTA-GTATACTCCC-GGAG-A--GAGTGTATAAGGGTGTT-T-TCCCCTCC-------------TACTTGCAG---TGTGTGTGTGGGG-----------C-CCTTCT-CCT---ATA------T--TTT-----TTTCT--TT--T-A-TAGAACT---GCAAAT-------TTTT---AGCGGC-TTTG------ACATGGACTGTG---AAATCAT-----TCAAATTGCCCGA-AAATATACGGGAT---TTCT---GTT---TCCAAAAGCACGAACCCCTTACC--C--GA---TA--C-------CCC-------------AAGC-ACA-TTTTT--ATTGCA-TCTTT------------T-GCATTAT-AA-C--CGT--TTTCA--GTTTCC-GTATTCAACTC-TAAATTATGCGCCCGGGCGTTTA--CGAGTA-TGCCTAGGAAA----GCCCCT
gi|8                          :                                                                                                                     ctataatgTTTTGA-GTATATGCCT--------------TGGGAAGGGGATGG-TTCCCT---------------TA-----------GTAT---T---------------T-CT--CC-CAT---G-A------G--GTA-----ATT----TT--A-A-TAGAACT---GCGTATGAGTAATTGT----AG--AC-TTTG------ACATG-ACTGTG---AAGTCAT-----TCAAATTGCCCGA-AATTATACGGGTT---ATCT---TTT---TCCTAAAGCACGAGCCTCTTACC--C--TA---TA--CT------CCAT-T---------TCGGCTTCA-TTTTC--AATGCATT-TTT------------C-GCATTTT-AA-C-TTTT--TTTTA--TTTTCC-ACATTCAACTC-TGAGTTATACGCCCAGGCATATA--GGAATA-TGCCTAAGAAC----ACCCCTG
gi|9                          :                                                                                                              gacattattagatgggTTTCA-GTATACGACC-AGGTGA--GGGTGTGGGAGGGGATTG--CCTCCTCA-------------TACTTTTGT---GGGGT---T
gi|9                          :                                                                                                                                                                                                                                                                                           agtcgttcctggatgtttaTTT---AGCGAC-T--G------ACACGGACTGTG---GAGTCAT-----TCAAGTTGCCCGA-AATTATACGG-TT---TTCT---ATT---TCCTAAAGCATGAATTCCTTATC--C--CG---TA--CACC----CCTC-T---------TTGGCTTCATTTTC---ATTGCA-TATTT------------C-GTATTTT-AA-C-TTTT--TTTTA--TTTTTCTATCTTCAACTC-TCAGTAATACGCCCAGGTGTATT--GCAATA-TGCCTAGGAAC----GCCCCTGtagcgactgacacggactgtggagtcattcaagttgcccgaaattatacggttttctatttcctaaagcatgaattccttatcccgtacacccctctttggcttcattttcattgcatatttcgtattttaacttttttttatttttctatcttcaactctcagtaatacgcccaggtgtattgcaatatgcctaggaacgcccctgagtgtggccagttacca


blockSeqs                     :                                                                                                                                 T T         CC      TG              G   TC       CCCCCCCCCCCACC         TGT   GTGTGTG   ATGTTCGGGGC .  TT  T   GAGATTTGT         CTCTC   TAAA  TA G A       TCT                 .        .    .                 TCA       CATGT             C             TTA    TAT   TCC                       AA C   T    AT GTTTCCA  CCA CCCATCTCT         T    TTT      T A   AACTACTACATA C       A  CCT    TC     AG      T           T                       CT      C           CGCT
blockSeqs                     :                                                                                                                                 T .         C       .               G   T        C                      .     GTTG      GTGGTTG     .  TT  .   GAGATCA           A       CT    .  . .       .                   .        .    .                 .         .                 .             .      .     .                         .  C   .    .  ACC      AC  .                 T    T        T C   T            C       .  CCT    .      .       .           T                       .       .           .   
blockSeqs                     :                                                                                                                                 T .         C       .               G   T        G                      .     GAGG      GGAC        .  T   .   CGAGAT            C       .     .  . .       .                   .        .    .                 .         .                 .             .      .     .                         .  T   .    .  TA       CC  .                 T    A        T A   C            .       .  CAT    .      .       .           .                       .       .           .   
blockSeqs                     :                                                                                                                                 T .         C       .               G   T        C                      .     AGTA      .           .  .   .   CGAGAT            .       .     .  . .       .                   .        .    .                 .         .                 .             .      .     .                         .  A   .    .  T        CA  .                 T    T        C .   .            .       .  CAT    .      .       .           .                       .       .           .   
blockSeqs                     :                                                                                                                                 T .         C       .               T   C        G                      .     ATTG      .           .  .   .   AAGAT             .       .     .  . .       .                   .        .    .                 .         .                 .             .      .     .                         .  C   .    .  .        CC  .                 T    T        T .   .            .       .  CC     .      .       .           .                       .       .           .   
blockSeqs                     :                                                                                                                                 G .         C       .               G   T        G                      .     ATTG      .           .  .   .   TGAAT             .       .     .  . .       .                   .        .    .                 .         .                 .             .      .     .                         .  C   .    .  .        AC  .                 T    T        . .   .            .       .  CC     .      .       .           .                       .       .           .   
blockSeqs                     :                                                                                                                                 G .         C       .               G   T        C                      .     ATTG      .           .  .   .   ATAT              .       .     .  . .       .                   .        .    .                 .         .                 .             .      .     .                         .  C   .    .  .        AC  .                 T    T        . .   .            .       .  CC     .      .       .           .                       .       .           .   
blockSeqs                     :                                                                                                                                 G .         T       .               G   T        C                      .     ATT       .           .  .   .   GAA               .       .     .  . .       .                   .        .    .                 .         .                 .             .      .     .                         .  C   .    .  .        AT  .                 T    T        . .   .            .       .  CC     .      .       .           .                       .       .           .   
blockSeqs                     :                                                                                                                                 G .         T       .               G   T        C                      .     TTA       .           .  .   .   GAT               .       .     .  . .       .                   .        .    .                 .         .                 .             .      .     .                         .  C   .    .  .        CC  .                 T    T        . .   .            .       .  TT     .      .       .           .                       .       .           .   
blockSeqs                     :                                                                                                                                 G .         C       .               G   T        G                      .     ATT       .           .  .   .   AAT               .       .     .  . .       .                   .        .    .                 .         .                 .             .      .     .                         .  C   .    .  .        CC  .                 .    T        . .   .            .       .  CT     .      .       .           .                       .       .           .   
blockSeqs                     :                                                                                                                                 G .         T       .               G   T        G                      .     ATT       .           .  .   .   GAG               .       .     .  . .       .                   .        .    .                 .         .                 .             .      .     .                         .  C   .    .  .        TT  .                 .    T        . .   .            .       .  CT     .      .       .           .                       .       .           .   
blockSeqs                     :                                                                                                                                 T .         C       .               A   G        C                      .     AT        .           .  .   .   GAG               .       .     .  . .       .                   .        .    .                 .         .                 .             .      .     .                         .  C   .    .  .        AC  .                 .    T        . .   .            .       .  CT     .      .       .           .                       .       .           .   
blockSeqs                     :                                                                                                                                 G .         .       .               .   .        A                      .     TG        .           .  .   .   AAT               .       .     .  . .       .                   .        .    .                 .         .                 .             .      .     .                         .  G   .    .  .        AC  .                 .    C        . .   .            .       .  CT     .      .       .           .                       .       .           .   
blockSeqs                     :                                                                                                                                 C .         .       .               .   .        .                      .     AG        .           .  .   .   AAT               .       .     .  . .       .                   .        .    .                 .         .                 .             .      .     .                         .  T   .    .  .        AT  .                 .    .        . .   .            .       .  T      .      .       .           .                       .       .           .   
blockSeqs                     :                                                                                                                                   .         .       .               .   .        .                      .               .           .  .   .   GAG               .       .     .  . .       .                   .        .    .                 .         .                 .             .      .     .                         .  C   .    .  .        TC  .                 .    .        . .   .            .       .  C      .      .       .           .                       .       .           .   
blockSeqs                     :                                                                                                                                                     .               .                                                   .           .  .   .   .                 .       .     .  . .       .                   .        .    .                 .         .                 .             .      .     .                         .  .   .    .  .        A   .                 .    .        . .   .            .       .  C      .      .       .           .                       .       .           .   
blockSeqs                     :                                                                                                                                                                                                                                                                                .  . .       .                   .        .    .                 .         .                 .             .      .     .                         .  .   .    .  .        C   .                 .    .        . .   .            .       .  C      .      .       .           .                       .       .               
blockSeqs                     :                                                                                                                                                                                                                                                                                             .                   .        .    .                 .         .                 .             .      .     .                         .  .   .    .  .        .   .                 .    .        . .   .            .       .  .      .      .       .           .                       .       .               
blockSeqs                     :                                                                                                                                                                                                                                                                                             .                   .        .    .                 .         .                 .                    .     .                                                                                           .            .       .  .                     .           .                                               
blockSeqs                     :                                                                                                                                                                                                                                                                                             .                   .        .    .                 .         .                                                                                                                                                                                                                                                  
blockSeqs                     :                                                                                                                                                                                                                                                                                                                 .                                                                                                                                                                                                                                                                                            


blockSeqCons                  :                                                                                                                                                                                                               ATTG***                                                                                           ***           ******                                                                                                C** ***              NC*                                                               CT**
originalCons                  :                                                                                                                             TTTTNA-GTATACGCCC-GGGGGA--GGGTGTGGGAGGGGGTTGT-CCCCCTCC-------------TACTTGCGG---GGGAT---TGGGG-----------T-CC--CC-CCC---G-A------T--TTT-----TTT----TT--A-A-TAGAACT---GCAAATGAGTAGTTTTT---AGCGAC-TTTG------ACACGGACTGTG---AAGTCAT-----TCAAATTGCCCGA-AATTATACGGGTT---TTCT---ATT---TCCTAAAGCACGAACCCCTTACC--C--CA---TA--C-------CCNC-T---------TCGGCTTCATTTTTT--ATTGCA-T-TTT------------C-GCATTTT-AA-C-TTTT--TTTTA--TTTTCC-ACATTCAACTC-TGAGTTATACGCCCGGGCGTATA--GGAGTA-TGCCTAGGAAC----GCCCCTG
finalCons                     :                                                                                                                             TTTTNA-GTATACGCCC-GGGGGA--GGGTGTGGGAGGGGGTTGT-CCCCCTCC-------------TACTTGCGG---GGGATTG---GGG-----------T-CC--CC-CCC---G-A------T--TTT-----TTT----TT--A-A-TAGAACT---GCAAATGAGTAGTTTTT---AGCGAC-TTTG------ACACGGACTGTG---AAGTCAT-----TCAAATTGCCCGA-AATTATACGGGTT---TTCT---ATT---TCCTAAAGCACGAACCCCTTACC--CC--A---TA--C-------CCNC-T---------TCGGCTTCATTTTTT--ATTGCA-T-TTT------------C-GCATTTT-AACT--TTT--TTTTA--TTTTCC-ACATTCAACTC-TGAGTTATACGCCCGGGCGTATA--GGAGTA-TGCCTAGGAAC----GCCCCTG

Unaligned ( gi|26 ): CCATTTAAATGTCAGTCTGTAGCTCAAACGTCCCTGACATATA

lowQualScore                  :                                                                                                                                                                                  11111111111111                         22222222222            111111111111111   11111                                                                                                                                                                          1111111                        1             1     111111111111            1111                                                                                     
lowQualScore                  :                                                                                                                                 1 2         33      33    0         2   33       55555555555555         444   6666666   33333333333 2  88  2   888888888888888   00000   8888  33 2 2       333                 333      1    555555            333       44444             2        0 0  333    333   333                       22 333 555  22 5555555  666 888888888         5    666      0 6   444444444444 4       2  1111   22     22      2           4                       22      2           5555       
lowQualScore                  :                                                                                                                                 . .         ..      ..    .         .   ..       ..............         ...   .......   ........... .  ..  .   ...............   .....   ....  .. . .       ...                 ...      .    ......            ...       .....             .        . .  ...    ...   ...                       .. ... ...  .. .......  ... .........         .    ...      . .   ............ .       .  ....   ..     ..      .           .                       ..      .           ....       
lowQualScore                  :                                                                                                                                 0 5         22      22    2         7   66       44444444444444         444   3333333   88888888888 4  88  4   555555555555555   66666   2222  11 2 2       333                 222      9    555555            333       88888             0        1 1  777    555   555                       99 888 888  99 5555555  333 444444444         6    333      5 3   222222222222 0       0  2222   99     99      0           0                       99      1           0000       
consensus                     :                                                                                                                             TTTTNA-GTATACGCCC-GGGGGA--GGGTGTGGGAGGGGGTTGT-CCCCCTCC-------------TACTTGCGG---GGGAT---TGGGG-----------T-CC--CC-CCC---G-A------T--TTT-----TTT----TT--A-A-TAGAACT---GCAAATGAGTAGTTTTT---AGCGAC-TTTG------ACACGGACTGTG---AAGTCAT-----TCAAATTGCCCGA-AATTATACGGGTT---TTCT---ATT---TCCTAAAGCACGAACCCCTTACC--C--CA---TA--C-------CCNC-T---------TCGGCTTCATTTTTT--ATTGCA-T-TTT------------C-GCATTTT-AA-C-TTTT--TTTTA--TTTTCC-ACATTCAACTC-TGAGTTATACGCCCGGGCGTATA--GGAGTA-TGCCTAGGAAC----GCCCCTG
Reference ( family-2958 )     :                                                                                                                             TTTTNA-GTATACGCCC-GGGGGA--GGGTGTGGGAGGGGGTTGT-CCCCCTCC-------------TACTTGCGG---GGGAT---TGGGG-----------T-CC--CC-CCC---G-A------T--TTT-----TTT----TT--A-A-TAGAACT---GCAAATGAGTAGTTTTT---AGCGAC-TTTG------ACACGGACTGTG---AAGTCAT-----TCAAATTGCCCGA-AATTATACGGGTT---TTCT---ATT---TCCTAAAGCACGAACCCCTTACC--C--CA---TA--C-------CCNC-T---------TCGGCTTCATTTTTT--ATTGCA-T-TTT------------C-GCATTTT-AA-C-TTTT--TTTTA--TTTTCC-ACATTCAACTC-TGAGTTATACGCCCGGGCGTATA--GGAGTA-TGCCTAGGAAC----GCCCCTG
gi|1                          :                                                                                                                             TTTTTA-GTAAACGCCC-GGG--A--AGGTGTGGGAGGGGGTTGT-CTCTCTCC-------------TCCTTGCGG---GGG-T---TGTGG-----------TGCA--GC-CCC---T-A------T--ATT-----TTT----TT--A-A-TAGAACT---GCAAATGAGAAGTTTTTATCAGAGACATATGTCAACAACACGGACCGTG---AAGCAAT-----TCAAATTGCCGGA-TAGTATACGGGTT---TTCT---ATT---TCCTACAGCACGAACCCCTTACT--CAACAGGCTA--C-------TC-C-T---------TCGGCTCCAAATTGT--ATTGCA-T-TTT------------C-GCATGTT-AA-C--CCT--TTATA--TTTTCC-ACATTCAACTC-TCAG-TATA
gi|10                         :                                                                                                              ggcggtcctgtatgtTTTTTA-GTATACACCC-AGGG--------------------TGT-CCACCTTC-------------TACTTGCAG---CAGGT---TGGGAGGAC-------T-CT--CC-CCAAA-G-A------T--TTT-----TTT----CTTAA-A-TAGAACT---GCAAATGAGTAGCTTTT---AGCGAC-TTTG------GCAGGGACTTTG---AAGTCAT-----TCAAACTGCCTGA-AATTATATGGGTT---TTCT---ATT---TTCTGAAGCATGAACCACTTACC--T--CA---TA--C-------CCAC-T---------TCGGCTTCATTTTTTTTATTGCA-T-TTTT-----------C-GCATTTT-----------------------CC-ACATTCA--------GTTATAGTCCTGGATGTATA--GGAATA-TGCTTAGAAAC----GTCCCTggtgccaaaccgccaaggaacacacctgacttagttatgc
gi|11                         :                                                                                                                                 gcttcctagatgt-GGGGGA--GGG-GTGGGGGGAGG---------------------------------GG---GGAAT------GG-----------T-CA--CC-CGG---G-A------A--TTTA----TTT----TT--A-AATAAAACT---GCGAATGAGTAGTTTTT---AACGAC-TTTG------ACACGGACTGTC---AAGTTAT-----TAAAATTTCCCTA-AATTATACGAGTT---TTCT---AAT---TCCTAAAGCACGATCGCC-TACC--C--CA--------------------T---------TCGGCTTCA-TTTTT--ATTGCA-T-TTTC-----------C-GTATTTT-AACC-TTTT--TTTTA--TTTTCC-ACATTCAACTC-TGAGTTATACGCCCGCGTGGATA--GGAGAA-TGCCTAGGAAC----ACCCCTG
gi|12                         :                                                                                                                                                                                                                                                              tgtgtttacatggtattT--A-A-TATAACT---GCAAATGGGTAGTTATT---AGCGAC-TTTC------GCA-GGATTGTG---AAGTCAT-----TCATATTGCCTTT-AATCATACGGATT---TCTT---AAT---TCCTAAAGCAGAAACTCCTTACC--C---A---TA--C-------CCCC-TCCCATCTCTTCGGCTTCATTTTTA--ATTGCT-T-TTT------------CCGTATTTT-AA-C-CTAT--TTTTAAGTGTGCA-ACATTCAACTC-TGAGTTATACGCCAGGGCGTATA--GTAGTA-TGACTAGGAAC----GCCCCTG
gi|13                         :                                                                                                                                                                           ggggcgttccttgatggtttgagtattcaacagggatattgaaGGG-----------T-CCT-CC-CCC---G-AGATTTGT--TTT-----CTT----TT--A---TAGAACT---GCAAGCGAGTAGCTTT----AGCGGC-TT-A------ACACGGATTGTGTCAAAGTCAT-----TTAAATTGCCCAA-AACTGCATCAGTT---TTCA---ATT---TTCTAAAGCACGAACAATTTACT--C--TAT--TA--C-------CCCA-T---------TCGGCTTCATTTTCT--ATTGAA-TATTT------------C-GCATTTT-AACC-TTTT--TTTCA--TTTTCC-ACATTCAACTCTTGAGTTACACGCCCGGGCGAACC--GGAGTA-TGCGCAGGAAT----ACCTCTG
gi|14                         :                                                                                                                            tTTTTTG-GTATACACCCCGGGGGA--GGGTATGGGACGGGGTTGTCCCCCCTCG-------------TACTTGC
gi|14                         :                                                                                                                                                                                                                                                                               gttcctagatgatT---GCAAATGAGTAGTTTTT---AATGAC-TTTG------GCACTGACTGTG---AAGTTAT-----TCAAATTGCCCGA-AATTTTACGGGTA---TTCT---ATC---TTCCAAAGCACTAACCCCTTACC--C--AA---TAATC-------CCA--T---------TCGGCTTAA--TTTT--ATTACA-T-TTT------------T-GCAGTTG-AA-C-CTAT--TTTCA--TTTTCC-ACATTCAGCTC-AGAGTAATACGaaatgagtagtttttaatgactttggcactgactgtgaagttattcaaattgcccgaaattttacgggtattctatcttccaaagcactaaccccttacccaataatcccattcggcttaattttattacatttttgcagttgaacctattttcattttccacattcagctcagagtaatacga
gi|15                         :                                                         gttcctagatgattttttggtatacaccccgggggagggtatgggacggggttgtcccccctcgtactTTTTTATGTATACGCCC-GGGAGA--GGGTGTTGGAGGATGTTGT--CCCCTCC-------------TAGTTGCGG---GGGAT---T-GGG-----------T-CC--TC-CCCCGAG-A------T--TTTCTCTCTTTTAAATT--A-A-TAGCACT---GCAAATGAGTAG--TTT---GATAAC-TTTG------ACACGAACTTTA---AAGTCAT-----TAATATTGCCGAA-AATTAa
gi|15                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      attcctagttagTT------------A-GCATTTC-AA-C-CTAT--TTTTA--TTTTTC-ACATTCATTTC-TGAGTAAT------GGGCGTATA--GGAGCA-TGCCTgcatttcaacctatttttatttttcacattcatttctgagtaatgggcgtataggagcatgcct
gi|16                         : attcctagttagtttttatgtatacgcccgggagagggtgttggaggatgttgtcccctcctagttgcgggggattgggtcctcccccgagattttctctcttttaaattaatagcactgcaaatgagtagtttgataactttgacacgaactttaaagtcattaatattgccgaaaa-------------TACTCCCAG---GGGGA---GGGGG-----------T-CC--TT-CCC---G-A------T--AAT-----TTC----T---A-A-T--------------TGAGTAGTTTTT---AGCGAC-TTTG------AAATGGACTCTT---AAGTCATCATGTTCTAATTGCCCAA-AATTA-------------------------------GCACAGACCTCTTACC--C--CA---TA--C-------CCCC-T---------CCA----CA------------CA-C-TT-------------C-GCGTTC--AA---TCCT--TTTTA--T----C-ACTTCCAACTC-TGAGTTATACATCCGGGCGGGTA--GGAGTA-TGCATAGGAAC----GTCTCT
gi|17                         :                                                                                                                                                                                                                                                                  gggcgttcctagatgatttttgagACT---GCAAGTGAGTAGGTGAT---AACGAC-TTTG------ACACGGACTGTG---CTGTCAT-----TCGAATTACTAAACAATTATACGGGTT---TTCT---ATT---TCCTAAAGCGTGCACACCTTACA--C-------TA--CGTTTCCACCAC-T---------TCGTATTCATTTTT---ATTGCA-T-TTT------------CCGCATTTT-GA-----TA--TTTAA--TTATCC-ACATTCAACTC-TGCTTTATACGCCCGGACGTATA--GGAGTA-TGTCTAGGAAA----GCCCCT
gi|18                         :                                                                                                                                                                                                                 tttcattG-----------T-CT--TC-TCCTG-A-A------T--TTT-----TTT----TT--A-C-TAGAACT---GCAAATGAGTACTTTTT---AATGAT-TTTG------CCACAGACTG-----AAGTCAT-----TCAAATTGCCCAA-AATTATACGGGTT---TTCT---ATT---TCCTAAAGCACAAACCCC-----------------------------AC-T---------TTGGCTTCATTTTT--------A-T-T----------------GCATTTT-AA-C-CTTT--TTTTA--TTTTCC-ATATTCAGCTC-CGAGTTATACGCCTGAACATATA--GGAGTA-T
gi|19                         :                                                                                                                           gtTTTTTA-GTATACGTCC-GGAAGA--GGGGGTGGGAGGGTGTTGT-CTCCCATG-------------TACTTGCTG---GG------TGGGGGTGGTTG----T-CC--CCTCCC---A-A------T--TTT-------T----TT--A-A-TAGAACT---GCAAATGAGTAGTTTTT---AGCGAC-TTTG------ACATGGCC--TG---AAGTGTT-----TCAAATTGCCTGA-AATTAAAAA---T---ATCT---TTT---TCCTAAAGt
gi|2                          :                                                                                                                     ttagatgtTTTTTA-GTATACGTCC-GTGGGA--GGGTATGGGAGGGA-TTAC-CCCCCTCG-------------AACTTGCGATGTGGGAG---TAGGG-----------T-CCTTCC-CCC---G-AGA----TCATTT-----TCT----TT--A-A-TAGAACTTCTGTCGTTGAATAGTTTT----AGCGAC-TTTG------ATACGGACTGTG---AGTTCAT-----TTAAATTACCCGA-AAGTATACGGGCT---TTCT---ATTTCCTCCTAAAGCACGAATCCATTACCAAA--CA---CA--CTA-----CCAT-T---------TCGGCTTCA-TTTTT--ATTGCATT-TTT------------C-GGATTCT-CA-T-TTTT--AATT---TTTTCC-ACATTCAACTCTTGAGTTATACGACCGGGTGTAAA--GGAGTA-TGCCTAGGAAC----GCCCCTtg
gi|20                         :                                                                                                                                                                                                                                                                                 cctagtAGAACT---GCAAATGAGTAGTTTTT---AGTGAC-TTTG------ACAAGGACTGTG---AAGTCAT-----TCAAATTGCTTGA-AATT-T------------------------------GCACGAACCCCTGACC--C--CA---TA--T-------CCCCAT---------TTGGCTTCA-TTTTT--GTTGCA-T-TTTAACTACTACATAT-GCATTTT-AA-C-Tt
gi|21                         :                                                                                                                                                                                                                                                                                                                                                                                                CT---GTT---TCTTAAAGCATACAGCCCTTATT--C--CA---TA--C-------CCCC-T---------TCGGCTTCATTTT----ATTGCATT-TTT------------C-ACATTTTAAA-C---TT--TTTTA--TTTTCC-ACATTCAACTC-TGAGTTATGCGTCAGGGC----------GTA-TGCCTAGGAAC----ACCCCTGactacatatgcattttaactggacttttccaaactca
gi|22                         :                                                                                     tcatttaaagccgccggaatgtgccgagtcagcaaatataTTTTGA-GCAGGGGCT---GGGGATGGGGT-TGTGAGGTGTTTTT-CCGCCTCC-------------AACTTGCGT---GGG-T---TAGGT-----------C-CT--CC-CCT---G-A------G--ATT-----TCT----TT--A-A-TAGAACT---GCAAATAAGCAG-TTTT---AGC
gi|23                         :                                                                                                                          gcaTTTTGA-GTATACG-----GAGGA--AGATGTGAGAGTGGGTTG--ACTCCTCC-------------TACTTGTGG---GGGAT---T---------------------------------------------------CT----TT--A-A-TTGAACT---GCAAATGAGTAGTCTTT---AGTGAC-TTTG------ACACAGACTGT----AAGTCAT-----TCAATTTGCCCagatggagggaaaggtttcaaaattcaaatatataaatttttaatt
gi|24                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           gtattcctagatggaCCCGGGCGTATACTCAAGCACTGTCTAGCCAC----GCCCCTG
gi|24                         :                                                                                                                         agggatTTGA-GTATACGCCC-GGGAGA--GGGCGTGGAAAGGTGTTGagagggcgtggaaaggtgttg
gi|25                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    agggatcaggggcgtggctagacagtgcCC-ACGTTCGACTC-TGAGTTATACGCCCGTGCGTTTA--GGAGTA-TGTCTAGGAACCGCTGCCCCT
gi|3                          :                                                                                                                                  A-GTATACGCCC-GGTGGG--GGGTCTGGGAGTGG-TTGT-CCCCCCCCCCCCCCCCCCACCTACTTG--A---GTGA-----GGGG-----------T-CC--TC-TCCCGAG-A------T--TTC-----TTT----TT--AGA-TAGAACT---GCAAATTGGTAGTTTTT---AGCGAA-TTTA------TCTCTAACTGGG---AAGTCAT-----TTAAATGGTCTGA-AATTAGACGGGTT---TTCT---ATT---TCCTAAAGCACGAACCCCTTACG--T--CA---TA--T-------ACCC-T---------CCGGCTTCA-TTTTT--ATTGCATT-TTT------------C-GCATTTT-AA-C--CTT--TTTTA--TTTTTC-ACATTCAACTC-TAAGTTTTA---CCATGTATATA--GAAGTA-TTTCTAGGAAC----GCCCC
gi|4                          :                                                                                                                  gattgtcttagTTTTGA-GTATATACC--AGTGAA--GGGTGTGTCAGGGG-CTGT-CCCCCTCC-------------TACTTGCGG---GGTAT---TGGGGATGTTCGGGGCT-CT--CC-TCC---G-A------G--ATT-----TTT----TT--A-A-TATGACT---GCAAATAAGTTGTTTT----GGCGAC-TTTT------ACACTAACAGTA---AAGTCAT-----TAAAATTGCCCGA-ATTTATACGGGTT---TTCA---ATT---TCCTAAAGCATGA-----T--CC--C--CA---TA--C-------CCTT-T---------TCGGTTTCA-TTTTT--ATTGCACT-TTT------------C-GCATTTT-AA-C-TTTTTCTTTTA--TTTTCC-ACAGTCAACTC-TGAGTTATACGCCCGGGCGTATA--GGCGTA-TACCTATGAAC----GCCCg
gi|5                          :                                                                                                                 ttcctagatggtTTTTGA-GTGTACGTTT-GGGGGA--TGGTATGGGAGGGGGTTGT-CCCCCTCG-------------TTCCTGCGG---GGGAT---TGGGG-----------T-CC--CC-CTC---A-A------T--TTT-----TTT----TT--A-A-CTGAACT---GTAAATTAGTAGTTTTT---AGCGAA-GTTG------ACACGGACTGTA---AAGACAT-----TCAAATTCCCCGA-AATTATAC---TTTTATTAT---ATT---TCCTTAAGCACGAACCCCTTACC--C--CA---TA--T-------CCAC-T---------TAGGCTTCATTTTTT--ATTGTA-T-TTT------------C-GCATTTT-AA-CATTTT--TTTTA--TTTTCC-ACATTCAACTC-TGATCTATACGCCCGGGCGTATA--TAAGTA-TGCATAGGAAC----ACCTCTG
gi|6                          :                                                                                                                             TTTGGA-GTTAACGTTT-GGGGGA--TGGTGTGGGAGGGGGTTGT-CCCCCTCG-------------TTCCTGCGG---GGGAT---TGGGG-----------T-CC--CC-CTC---A-A------T--TTTC----TTT----TT--A-A-TTGAAGT---GCAAATAAGTAGTTTTT---AGCGAA-GTTG------ACACGGACTGTA---AAGACAT-----TCAAATTCCCCGA-AATTATAC---TT---TTATTATATT---TCCTTAAGCACGTACCCCTTACC--C--CA---TA--C-------CCAC-T---------TAGGCTTCATTTTTT--ATTGTA-T-TTT------------C-GCATTTT-AA-CATTTT--TTTTA--TTTTCC-ACATTCAACTC-TGATCTTTACGCCCGGGCGTATA--TAAGTA-TGCATAGGAAC----GCCTCT
gi|7                          :                                                                                                                              TTTTA-GTATACTCCC-GGAG-A--GAGTGTATAAGGGTGTT-T-TCCCCTCC-------------TACTTGCAG---TGTGTGTGTGGGG-----------C-CCTTCT-CCT---ATA------T--TTT-----TTTCT--TT--T-A-TAGAACT---GCAAAT-------TTTT---AGCGGC-TTTG------ACATGGACTGTG---AAATCAT-----TCAAATTGCCCGA-AAATATACGGGAT---TTCT---GTT---TCCAAAAGCACGAACCCCTTACC--C--GA---TA--C-------CCC-------------AAGC-ACA-TTTTT--ATTGCA-TCTTT------------T-GCATTAT-AA-C--CGT--TTTCA--GTTTCC-GTATTCAACTC-TAAATTATGCGCCCGGGCGTTTA--CGAGTA-TGCCTAGGAAA----GCCCCT
gi|8                          :                                                                                                                     ctataatgTTTTGA-GTATATGCCT--------------TGGGAAGGGGATGG-TTCCCT---------------TA-----------GTAT---T---------------T-CT--CC-CAT---G-A------G--GTA-----ATT----TT--A-A-TAGAACT---GCGTATGAGTAATTGT----AG--AC-TTTG------ACATG-ACTGTG---AAGTCAT-----TCAAATTGCCCGA-AATTATACGGGTT---ATCT---TTT---TCCTAAAGCACGAGCCTCTTACC--C--TA---TA--CT------CCAT-T---------TCGGCTTCA-TTTTC--AATGCATT-TTT------------C-GCATTTT-AA-C-TTTT--TTTTA--TTTTCC-ACATTCAACTC-TGAGTTATACGCCCAGGCATATA--GGAATA-TGCCTAAGAAC----ACCCCTG
gi|9                          :                                                                                                              gacattattagatgggTTTCA-GTATACGACC-AGGTGA--GGGTGTGGGAGGGGATTG--CCTCCTCA-------------TACTTTTGT---GGGGT---T
gi|9                          :                                                                                                                                                                                                                                                                                           agtcgttcctggatgtttaTTT---AGCGAC-T--G------ACACGGACTGTG---GAGTCAT-----TCAAGTTGCCCGA-AATTATACGG-TT---TTCT---ATT---TCCTAAAGCATGAATTCCTTATC--C--CG---TA--CACC----CCTC-T---------TTGGCTTCATTTTC---ATTGCA-TATTT------------C-GTATTTT-AA-C-TTTT--TTTTA--TTTTTCTATCTTCAACTC-TCAGTAATACGCCCAGGTGTATT--GCAATA-TGCCTAGGAAC----GCCCCTGtagcgactgacacggactgtggagtcattcaagttgcccgaaattatacggttttctatttcctaaagcatgaattccttatcccgtacacccctctttggcttcattttcattgcatatttcgtattttaacttttttttatttttctatcttcaactctcagtaatacgcccaggtgtattgcaatatgcctaggaacgcccctgagtgtggccagttacca