lowQualScore : 1111111 11 222222 1111 1 1 222 222 1 1111 1111111111 111111 1111111 2222222222222 1 1 1 2 1
lowQualScore : 4 1111111 4 00 000000 2222 3 7 0 3 8 3 2 2 4 5 1 3 55 666 555 1 2 0 333 1 0 3 555 555 2 555 66 3333 3 555 6666666666 1 4 111111 4 3333333 4 6666666666666 4 2 77777 0 5 44 99 55 2 3 4 5 4 1 0 55 0 0 4 1
lowQualScore : . ....... . .. ...... .... . . . . . . . . . . . . .. ... ... . . . ... . . . ... ... . ... .. .... . ... .......... . . ...... . ....... . ............. . . ..... . . .. .. .. . . . . . . . .. . . . .
lowQualScore : 4 8888888 1 00 999999 3333 6 3 5 6 2 6 3 8 2 9 2 6 00 444 666 2 1 5 888 2 8 1 444 444 8 444 44 1111 3 888 7777777777 6 0 555555 0 0000000 4 7777777777777 4 0 77777 1 2 77 55 55 5 6 0 0 0 1 8 55 3 0 3 2
consensus : GGAAGACCGGTGACCTCT-TGTTCA-------AGAGGTCGTT--GT------GTGCAGAAGTAG---GTCCA-T-TTAAA-ATATAAACTGTG-CATTTCATTTGTGTTTATGTTTACATTGGCTGTAATTCCTCCAATATTATTCATCCCATGTGAAAGTNTAAGTCTTTATNTACTAAGGTA-CAGGATA--TT---TTT--GTATTTTTCAGGGACTATTTTGTCAGAGTGTANGACGATAGAGACAACTTGAATGAAACTCGGGC-ACC---AGCAT---TTTCNTGAC---A-TT----TTGGATAGAG-T---GAT--------GGGACGAATGGA-TA------TAGTGA-AA-------AAA-CGAGA--TT-AT-----CATGATG-GCATTACAGAGACACAGAAAGACTGCTAAATAGGTCTCCTGCATGGATTAACTTGTGC--TAT--ATGTGTGGGAACGTTTTT-AAATTTGTGACAGAACNCCAAAACTA-TAGAATTTCAGTT--GAAATATATAGGCGAAAAAGTGACCGGTCTGACTC
Reference ( gi|5 ) : GGAAGACCGGTGACCTCT-TGTTCA-------AGAGTTCGTT--GT------GTGCAGAAATAG---GTCCA-T-TTCAA-ATATAAACTGTG-CATTTCATTTGTGTTTATGTTAACATTGGCTGTAATTCCTCCAATATTATTCATCCCATGTGAAAGTGTAAGTCTTTATGTACTAAGATA-CAGGATA--TT---TTT--ATATTTTTCAGGGACTATTTTGTCAGAGTGTATGACGATAGAGACAAATAGACTGAAACTCGGGC-ACC---AGCAT---TTTCCTGAC---A-TT----TTGGATAGAG-T---GGT--------GGGACGAATGGA-TA------TAGTGA-AA-------AAA-CGAGA--GT-AT-----CATGATG-GCATTACAGAGACACAGAAAGACTGCTAAATAGGTCTCCTGCATTGATTAACTTGTGC--TAT--ATGTGTGGGAATGTTTTT-AAATTTGTGACAGAACTCCAACACTA-TAGAATTTCAGTT--GAAATACATAGGCGAACAAGTTACCGGTCTGACTC
gi|4 : GGAAGACCTGTGACCTCT-TGTTAA-------AGAGGTCATT--GT------GTGCAGTAATAG---GTCCA-T-TTAAA-ATATAAACTGTG-CAATTCATTTGTGTTTATGTTTACATTGGCTGTAATTCCTCCAATATTATTCATCCCATGTGAAAGTTTAAGTCTTTATGTACTAAGATA-CAGGATA--TT---TTT--GTATTTTTCAGTGACTACTTTGTCAGAGTGTATGAGGATAGAGACAACTTGACTGAAACTCGGGC-ACC---AGCAT---TTTCCTGAC---A-TT----TTGGATAGAG-T---GAT--------GGGACGAATGGA-TA------TAGTGA-AA-------AAA-TGAGA--TT-AT-----CATGATG-GCATTACAGAGACACAGAAAGACTGCTAAATAGGTCTCCTGCGTGGATTAACTTGTGC--TAT--ATGTGTGGGAATGGTTTT-AAATTTGTGACAGAACACCAAAACTA-TAGAATTTCAGTT--GAAATATATAGGCAAAAAAGGGACTGGTCTGACTC
gi|2 : GGAAGACTGGTGACCTCT-TGTTCA-------AGAGTTTGTT--GT------GTGCAGAAGTAG---GTCCA-T-TTAAA-ATGTAAACTGTG-CATTTCATTTGTGTTTATGTTTACATTGGCTGTAATTCCTCCAATATTATTCATCCCATGTGAAAGTGTAAGTCTTTATGTACTAAGATA-CAGGATA--TT---TTTT-GTATTTTTCAGGGACTATTTTGTCAGAGTGTATGACGATAGACACAACTTGAATGAAACTCGGGC-ACC---AGCAT---TTTCCTTAC---A-TT----TTGGATAGAG-T---GAT--------GGGACGAATGGA-TA------TTGTGA-AA-------AAA-CGAGA--TT-AT-----TATGATG-GCATTACAGAGACACAGAAAGACTGCTAAATAGGTCTCCTGCATGGATTAACTTGTAC--TAT--ATGTGTGGGAATGTTTTT-AAATATGTGACAGAACACCATAACTA-TAGAATTTCAGTT--TAAATATATAAGCGAAAAAGTGACTGATCTGACTC
gi|6 : GGAAGACCAGTCACCTCT-TGTTCA-------AGAGTTCGTT--GT------GTGCAGAAGTAG---GTCCA-T-TTAAA-ATATAAACTTTG-CATTACATTTGTGTTTATGTTTACATTGGCTGTAATTCCTCCAATATTATTAATCCCATGTGAAAGTGTAAGTCTTTATTTACTAAGGTA-CAGGATATTTT---TTT--ATATTTTTCAGGGACTATTTTGTCAGAGTGTATGACGATAGAGACAACTTGAATGAAACTCGGGC-ACC---AGCAT---TTTCCTGAC---A-TT----TTGGATAGAG-T---GAT--------GGGACGAATGGA-TA------TAGTGATAA-------AAA-CGAG--------------ATTATG-GTATAACAAAGACACAGACAGACTGCTAATTATGTCTCCTGCATGGATTTACTTG-ACA-TAT--ATGTGTGGGAACGTTTTT-AAATTTGTGACAAAACACCAAAACTA-TAGAATTTCAGTT--GAAATATACTGGCGAAAAAGTGAATTGTCTGACTC
gi|11 : GGAAGAACGGTGACCTCT-TGTTCA-------AGAGGTCGTT--GT------GTGCAGAAATAG---GTCCA-T-TTGAA-ATATAAACTGTG-CATTTCATTTGTGTTTATGTTTACAATGGCTGTACTTCCTCCAATATTCTTCATCCCATGTGAAAGTGTAAGTCTTTATGTATTAAGATA-CAGGATA--TT---TTT--GTATTTTTCAGGGACTATTTTGTCAGAGTGTATGACGATAGAGACAACTTGAATGAAACTCGGGC-ACC---AGCAT---TTTCCTGAC---A-TT----TTGGATc
gi|9 : GGAAGACCAGTGACCTCT-TGTTCA-------AAAATGCATT--GT------GTGTGTTAATAG-----CCA-A-ATAAAGATATAAACT-TGACATTTTATTTGTGTTTACGTGTATATTGGCTATAAGTCATCCAATATTATTCACCCAATGTGAAAGTATAGG-CTTTATTTCCTAGGTTA-CAGGATA--TT---TTT--GTATTTTTCAGGGACTGTTTTGCCAGAGTGTAGGATGAC--AGGCAACTGGA-TGTACCTCAGCC-ACC---AGCTT---TATCATGGC---A-GT----TTTGATAGAA-T---GAA--------GGGGCAAATGCA-TA------AAGCGA-AA-------AA
gi|8 : GGAACAACGGTAGCAACTGTGTTCA-------AAAGGTCGTA--GG------GTAAAAAAATAG---TTCTA-T-TAAGA-ATCAAAGCT-TG-TTGTGTACTTGTTTTAATGTGATGATTGACTATAATTCTTCCAATATTATACACCCCCTGTGGACACTTGAGGCTTTAT-TCCTCAGGTATTAAGACA--TTGTGTTT---TATTTTTCAGGGACTATTTGATTAGAGTGCATGATGGCAGAGAT-----GACTAAGA----GGT-GCCTTTGTCATAAAGTGCTTGATCAAA-GT----TTGGATAGAGAT---AAT---------GGACACTTGAA-TA------TAGC-A-AA-------AAA-CGAGA--TT-GTGAAGACATCATA-ACATT-CA-----ATAGAAATACTGAAAAGGAAGTCTCCGCCATAGATTAATTTGTGT--TAA--ATG--------TGTTTTT-GAACTTGTGA---AAATTCA-----G-TTGAATT---ATT--AAAATA-GTAA--GAA-AATTGACCGGTC
gi|3 : GAAGACCGGTGACCTCT-TATTAA-------AGAGGTCGTT--GT------GTGCAGAAATAG---GTCCA-T-TTAGA-ATATAAACTGTG-CATTTCATTTGTGTTTATGTTAACATTGGCTGTAATTCCTCCAATAATATTCATCCCATGTGAAAGTGTAAGTCTTTATGTACTAAGATA-CAGCATA--TT---TTTTTGTATTTTTCAGGCACTATTTTGTCAGAGTGTATGACGATAGAGGAAACTTGACAGACACTCGGGC-ACC---ATCAT---TTTCCTGAC---A-TT----TTGGATAGAG-T---GAT--------GGGATGAATGGA-TA------TAGTGA-AA-------AAA-CGAGA--TT-AT-----CATGATG-GCATTACAGAGACACAGAAAGACTGCTAATTAGGTCTCCTGCATGGATTAACTTGTGC--TAT--ATGTGTGGGAATGTTTTT-AAATTTGTGACAGAACACCAAAACTA-TAGAATTTCGGTT--GAAATATATAGGCGAAAAAGTGACTGGTCTGACT
gi|7 : GAAGACCGGTGACCTCT-TGTTCA-------AGAGTTTGTT--GT------GTGCAGAAGTAG---GTCCA-T-TTAAA-ATATAAACTGTG-CATTTCATTTGTGTTTATGTTTACATTGGCTGTAATTCCTACAATATTATTCATCCCATGTGAAAGTGTAAATCTTTATGTACTAAGATA-CAGGATA--TT---TTT--GTATTTTTCAGGGACTATTTTGTCAGAGTGTATGACGATAGAGACAACTTGAATGAAACATGGGC-ACC---AGCAT---TTTCCTTCC---A-TT----TTGGATAGAG-T---GAT--------GGGACGAATGGA-TA------TTGTGA-AA-------AAA-CGAGA--TT-AT-----CATGATG-GCATTACAGAGACACAGAAAGACTGCTAAATAGGTC-ACTGCATGGATTAACTTGTGC--TAT--ATGTGTGGGAATGTTTTTAAAATTTGTGACAGAACACCAAATCTA-TAGAATTTCAGTT--GATATATATAAGCGAAAAAGTGACTGATCTGACT
gi|1 : AGACTGGTGACCTCT-TGTTCAGCAGGTTAAAGT-CGAA--GT------GTGCGAAAATAGAGCGTTCAGT-TTAAA-ATATAAACTTGG-AATTGCATTTGTGTTTATGTGTATAGTGGTTGTAATTCTACCAATATATTTCATCCCGTC----AGTTTAAGGCTATATTTCTTAAGTTA-CAGGATA--TT---TTT----------CAAGGACTATTTTGTCAGAGTGTAGGATTGCAGAGACAACTTGAATGTAACTCGGCC-ACC---AGCTT---TTTCATATC---A-GT----TTAGATAAAG-T---GAT--------GAACCGAATGCAGTA-------AATGA-AAAAAAAACAAA-CGAGATGGTGAT-----GATGATG-GCATTACAGTGGAACAGAAAGACTACTTAATCGGTCTCTTGTACGGATTAAAGCGTGC--TTT--ATGTGTGGCAACGTTTTT-AAACTTGTG-CAAAACTCCAAAATTA-CAGTATTTCAGTTAAAAAATATAAAGGCGAAAAATTGACTGGTCTCACTC
gi|14 : GTTCA-------AGAGGTCACCAGGTCACCAGGTCCAAAAGTAG-----TCG-TATTCAA-A----AACTTTG-CATTTCATTTGTGTTTATGTTTATATTGGCTGTAATTTCTCCAATATTATTCATTCAATGTGAATGTTTAAGGCTTCAATTACTAAAGTA-CGGGATA--TT---TTT-----TTT----------------TCAGAATGTAGGTTTATAGAGACAACTTGAATGAAATTCGGCC-ACC---AGCAT---TTTCATGAC---AGTTGAGATTGTATACAG-T---Gc
gi|13 : GTTCA-------AGAGGTCACCAGGTCACCAGGTCCAAAAGTAG-----TCG-TATTCAA-A----AACTTTG-CATTTCATTTGTGTTTATGTTTATATTGGCTGTAATTTCTCCAATATTATTCATTCAATGTGAATGTTTAAGGCTTCAATTACTAAAGTA-CGGGATA--TT---TTT-----TTT----------------TCAGAATGTAGGTTTATAGAGACAACTTGAATGAAATTCGGCC-ACC---AGCAT---TTTCATGAC---AGTTGAGATTGTATACAG-T---Gaga
gi|10 : TTTTAAAGGACTATTTTGTCAGAGTG-AGGATGACAGAGACAACTTGAATATAACTCGGCC-ACC---AGTTT---CTTCGTGAC---A-GT----TTGGACAGAG-TTTGGATAGAGCAAAGGGACAAAAGTA-TAGAAAAATAGTGA-AA-------AAAACGAGA---T-A-------ATGATG-CCATTCCA---------------------ATGGGTCTCCTGCATGGATAAAAGTATAC--TAT--ATGTGTGGCAACTTTTTT-AAAGTTATGACAAAACTCAAAAATTA-AAGAATTTCAGTT--GAAAT--ATAGGCGAAATATTAATCAGTCTGACTaga
gi|12 : GAGTGTAGGATTACAGAGACAACTTGAATGTAAGTCTGACCACC---AGCTT---TTTCATGAC---A-GT----TTGGGTAGAG-G---GAA--------GGGACAAATGTA-TA------TAGTG--AA-------AAA-C---A--AT-AT-----GATGATGAGGATTTCAG----------TGACTGCTAAATTGGCATCCTGTCTGGATTAAAGTGTGT--TATTCATGTATG----TG---TT-AAATTTGTGACAGAACTCTAAAATTG-TAG--TTTAAGTT--GAAATATATAGGCGAA-AATTCACTGATCTGATTCt
gi|15 : AAAGGCTGCAAACTATGTCTGCTCTGTGGATTAAA--GTGCCTTAT--ATTTGCAGCAACGCTAAC-AAACCTGTGACAc
gi|16 : agtgttaaaaatctagattataattcaacataaattTT-ATACTTGTAACAGAACTCCAAAATCAGCAGTATT---------AAGTATATAGGAGAAAAAGTGACCAGTC-GACcatctgataaatcagtgaattccagctcagttatac
Alignments
lowQualScore : 111111 1111 1111 11111111 111111 1111111 111111
lowQualScore : 4 44 7777 0 99 999999 0000 6 3 3 6 3 3 1 3 4 2 3 44 555 77 9 0 1 0 1 2 555 1 1 5 2222 3 555 33333333 0 3 000000 44 3 0000000 3 55 3 111111 3 55 0 22 88 55 1 3 2 3 1 44 0 7777 0
lowQualScore : . .. .... . .. ...... .... . . . . . . . . . . . .. ... .. . . . . . . ... . . . .... . ... ........ . . ...... .. . ....... . .. . ...... . .. . .. .. .. . . . . . .. . .... .
lowQualScore : 0 66 1111 4 22 222222 4444 7 3 3 7 3 3 0 1 2 2 3 66 888 99 3 4 0 3 9 9 000 9 0 7 1111 1 444 22222222 5 6 555555 66 3 8888888 6 00 6 999999 6 00 5 55 66 00 8 3 2 3 4 66 7 1111 2
consensus : GGAAGACCGGTGACCTCT-TGTTCA--AG----AGGTCGTT--GT------GTGCAGAAATAG---GTC-CA-TTTAAA-ATATAAACTGTG-CATTTCATTTGTGTTTATGTT-TACATTGGCTGTAATTCCTCCAATATTATTCATCCCATGTGAAAGTGTAAGTCTTTATGTACTAAGATAC-AGGATA--TT---TT--TGTATTTTTCAGGGACTATTTTGTCAGAGTGTATGACGATAGAGACAACTTGAATGAAACTCGGGC-ACCA---GCATTTTCNTGACA-TT----TTGGATAGAG-T---GAT--------GGGACGAATGGA-TA------TAGTG--A-AA-------AAA-CGAGAT--T-AT-----CATGATG-GCATTACAGAGACACAGAAAGACTGCTAAATAGGTCTCCTGCATGGATTAACTTGTGC--TAT--ATGTGTGGGAACGTTTTT-AAATTTGTGACAGAACNCCAAAACTA-TAGAATTTCAGTT--GAAATAT----ATAGGCGAAAAAGTGACCGGTCTGACTC
Reference ( family-2953 ) : GGAAGACCGGTGACCTCT-TGTTCA--AG----AGGTCGTT--GT------GTGCAGAAGTAG---GTC-CA-TTTAAA-ATATAAACTGTG-CATTTCATTTGTGTTTATGTT-TACATTGGCTGTAATTCCTCCAATATTATTCATCCCATGTGAAAGTNTAAGTCTTTATNTACTAAGGTAC-AGGATA--TT---TT--TGTATTTTTCAGGGACTATTTTGTCAGAGTGTANGACGATAGAGACAACTTGAATGAAACTCGGGC-ACCA---GCATTTTCNTGACA-TT----TTGGATAGAG-T---GAT--------GGGACGAATGGA-TA------TAGTG--A-AA-------AAA-CGAGAT--T-AT-----CATGATG-GCATTACAGAGACACAGAAAGACTGCTAAATAGGTCTCCTGCATGGATTAACTTGTGC--TAT--ATGTGTGGGAACGTTTTT-AAATTTGTGACAGAACNCCAAAACTA-TAGAATTTCAGTT--GAAATAT----ATAGGCGAAAAAGTGACCGGTCTGACTC
gi|1 : AGACTGGTGACCTCT-TGTTCAGCAGGTTAAAGTCGAA--GT------GTGCGAAAATAGAGCGTT-CAGTTTAAA-ATATAAACTTGG-AATTGCATTTGTGTTTATGTG-TATAGTGGTTGTAATTCTACCAATATATTTCATCCCGTC----AGTTTAAGGCTATATTTCTTAAGTTAC-AGGATA--TT---TT--T--------CAAGGACTATTTTGTCAGAGTGTAGGATTGCAGAGACAACTTGAATGTAACTCGGCC-ACCA---GCTTTTTCATATCA-GT----TTAGATAAAG-T---GAT--------GAACCGAATGCAGTA-------AATG--A-AAAAAAAACAAA-CGAGATGGTGAT-----GATGATG-GCATTACAGTGGAACAGAAAGACTACTTAATCGGTCTCTTGTACGGATTAAAGCGTGC--TTT--ATGTGTGGCAACGTTTTT-AAACTTGTG-CAAAACTCCAAAATTA-CAGTATTTCAGTTAAAAAATAT----AAAGGCGAAAAATTGACTGGTCTCACTC
gi|10 : TTTTAAAGGACTATTTTGTCAGAGTG-AGGATGACAGAGACAACTTGAATATAACTCGGCC-ACCA---GTTTCTTCGTGACA-GT----TTGGACAGAG-TTTGGATAGAGCAAAGGGACAAAAGTA-TAGAAAAATAGTG--A-AA-------AAAACGAGAT----A-------ATGATG-CCATTCCA---------------------ATGGGTCTCCTGCATGGATAAAAGTATAC--TAT--ATGTGTGGCAACTTTTTT-AAAGTTATGACAAAACTCAAAAATTA-AAGAATTTCAGTT--GAA--AT----ATAGGCGAAATATTAATCAGTCTGACTc
gi|11 : GGAAGAACGGTGACCTCT-TGTTCA--AG----AGGTCGTT--GT------GTGCAGAAATAG---GTC-CA-TTTGAA-ATATAAACTGTG-CATTTCATTTGTGTTTATGTT-TACAATGGCTGTACTTCCTCCAATATTCTTCATCCCATGTGAAAGTGTAAGTCTTTATGTATTAAGATAC-AGGATA--TT---TT--TGTATTTTTCAGGGACTATTTTGTCAGAGTGTATGACGATAGAGACAACTTGAATGAAACTCGGGC-ACCA---GCATTTTCCTGACA-TT----TTGGATt
gi|12 : GAGTGTAGGATTACAGAGACAACTTGAATGTAAGTCTGACCACCA---GCTTTTTCATGACA-GT----TTGGGTAGAG-G---GAA--------GGGACAAATGTA-TA------TAGTG----AA-------AAA-CAA-----T-AT-----GATGATGAGGATTTCAG----------TGACTGCTAAATTGGCATCCTGTCTGGATTAAAGTGTGT--TATTCATGTATGTG-------TT-AAATTTGTGACAGAACTCTAAAATTG-TAG--TTTAAGTT--GAAATAT----ATAGGCG-AAAATTCACTGATCTGATTC
gi|13 : GTTCA--AG----AGGTCACCAGGTCACCAGGTCCAAAAGTAG----TCGTA-TTCAAA-A-----ACTTTG-CATTTCATTTGTGTTTATGTT-TATATTGGCTGTAATTTCTCCAATATTATTCATTCAATGTGAATGTTTAAGGCTTCAATTACTAAAGTAC-GGGATA--TT---TT--T---TTT----------------TCAGAATGTAGGTTTATAGAGACAACTTGAATGAAATTCGGCC-ACCA---GCATTTTCATGACAGTTGAGATTGTATACAG-T---GAc
gi|14 : GTTCA--AG----AGGTCACCAGGTCACCAGGTCCAAAAGTAG----TCGTA-TTCAAA-A-----ACTTTG-CATTTCATTTGTGTTTATGTT-TATATTGGCTGTAATTTCTCCAATATTATTCATTCAATGTGAATGTTTAAGGCTTCAATTACTAAAGTAC-GGGATA--TT---TT--T---TTT----------------TCAGAATGTAGGTTTATAGAGACAACTTGAATGAAATTCGGCC-ACCA---GCATTTTCATGACAGTTGAGATTGTATACAG-T---GAga
gi|15 : AGTGTTA-AA-------AAT-CTAGAT--T-AT-----AAT--T---CA--ACATAAAT---TAAAGGCTGCAAACTATGTCTGCTCTGTGGATTAAA--GTGCCTTAT--ATTTGCAGCAACGCTAAC-AAACCTGTGACACATCTGATAAATCA-GTGAATTCCAGCT--CAGTTAT----ga
gi|16 : TT-ATACTTGTAACAGAACTCCAAAATCAGCAGTATT---------AAGTAT----ATAGGAGAAAAAGTGACCAGTC-GACc
gi|2 : GGAAGACTGGTGACCTCT-TGTTCA--AG----AGTTTGTT--GT------GTGCAGAAGTAG---GTC-CA-TTTAAA-ATGTAAACTGTG-CATTTCATTTGTGTTTATGTT-TACATTGGCTGTAATTCCTCCAATATTATTCATCCCATGTGAAAGTGTAAGTCTTTATGTACTAAGATAC-AGGATA--TT---TTT-TGTATTTTTCAGGGACTATTTTGTCAGAGTGTATGACGATAGACACAACTTGAATGAAACTCGGGC-ACCA---GCATTTTCCTTACA-TT----TTGGATAGAG-T---GAT--------GGGACGAATGGA-TA------TTGTG--A-AA-------AAA-CGAGAT--T-AT-----TATGATG-GCATTACAGAGACACAGAAAGACTGCTAAATAGGTCTCCTGCATGGATTAACTTGTAC--TAT--ATGTGTGGGAATGTTTTT-AAATATGTGACAGAACACCATAACTA-TAGAATTTCAGTT--TAAATAT----ATAAGCGAAAAAGTGACTGATCTGACTC
gi|3 : GAAGACCGGTGACCTCT-TATTAA--AG----AGGTCGTT--GT------GTGCAGAAATAG---GTC-CA-TTTAGA-ATATAAACTGTG-CATTTCATTTGTGTTTATGTT-AACATTGGCTGTAATTCCTCCAATAATATTCATCCCATGTGAAAGTGTAAGTCTTTATGTACTAAGATAC-AGCATA--TT---TTTTTGTATTTTTCAGGCACTATTTTGTCAGAGTGTATGACGATAGAGGAAACTTGACAGACACTCGGGC-ACCA---TCATTTTCCTGACA-TT----TTGGATAGAG-T---GAT--------GGGATGAATGGA-TA------TAGTG--A-AA-------AAA-CGAGAT--T-AT-----CATGATG-GCATTACAGAGACACAGAAAGACTGCTAATTAGGTCTCCTGCATGGATTAACTTGTGC--TAT--ATGTGTGGGAATGTTTTT-AAATTTGTGACAGAACACCAAAACTA-TAGAATTTCGGTT--GAAATAT----ATAGGCGAAAAAGTGACTGGTCTGACT
gi|4 : GGAAGACCTGTGACCTCT-TGTTAA--AG----AGGTCATT--GT------GTGCAGTAATAG---GTC-CA-TTTAAA-ATATAAACTGTG-CAATTCATTTGTGTTTATGTT-TACATTGGCTGTAATTCCTCCAATATTATTCATCCCATGTGAAAGTTTAAGTCTTTATGTACTAAGATAC-AGGATA--TT---TT--TGTATTTTTCAGTGACTACTTTGTCAGAGTGTATGAGGATAGAGACAACTTGACTGAAACTCGGGC-ACCA---GCATTTTCCTGACA-TT----TTGGATAGAG-T---GAT--------GGGACGAATGGA-TA------TAGTG--A-AA-------AAA-TGAGAT--T-AT-----CATGATG-GCATTACAGAGACACAGAAAGACTGCTAAATAGGTCTCCTGCGTGGATTAACTTGTGC--TAT--ATGTGTGGGAATGGTTTT-AAATTTGTGACAGAACACCAAAACTA-TAGAATTTCAGTT--GAAATAT----ATAGGCAAAAAAGGGACTGGTCTGACTC
gi|5 : GGAAGACCGGTGACCTCT-TGTTCA--AG----AGTTCGTT--GT------GTGCAGAAATAG---GTC-CA-TTTCAA-ATATAAACTGTG-CATTTCATTTGTGTTTATGTT-AACATTGGCTGTAATTCCTCCAATATTATTCATCCCATGTGAAAGTGTAAGTCTTTATGTACTAAGATAC-AGGATA--TT---TT--TATATTTTTCAGGGACTATTTTGTCAGAGTGTATGACGATAGAGACAAATAGACTGAAACTCGGGC-ACCA---GCATTTTCCTGACA-TT----TTGGATAGAG-T---GGT--------GGGACGAATGGA-TA------TAGTG--A-AA-------AAA-CGAGAG--T-AT-----CATGATG-GCATTACAGAGACACAGAAAGACTGCTAAATAGGTCTCCTGCATTGATTAACTTGTGC--TAT--ATGTGTGGGAATGTTTTT-AAATTTGTGACAGAACTCCAACACTA-TAGAATTTCAGTT--GAAATAC----ATAGGCGAACAAGTTACCGGTCTGACTC
gi|6 : GGAAGACCAGTCACCTCT-TGTTCA--AG----AGTTCGTT--GT------GTGCAGAAGTAG---GTC-CA-TTTAAA-ATATAAACTTTG-CATTACATTTGTGTTTATGTT-TACATTGGCTGTAATTCCTCCAATATTATTAATCCCATGTGAAAGTGTAAGTCTTTATTTACTAAGGTAC-AGGATATTTT---TT--TATATTTTTCAGGGACTATTTTGTCAGAGTGTATGACGATAGAGACAACTTGAATGAAACTCGGGC-ACCA---GCATTTTCCTGACA-TT----TTGGATAGAG-T---GAT--------GGGACGAATGGA-TA------TAGTG--ATAA-------AAA-CGAGAT--T------------ATG-GTATAACAAAGACACAGACAGACTGCTAATTATGTCTCCTGCATGGATTTACTTG-ACA-TAT--ATGTGTGGGAACGTTTTT-AAATTTGTGACAAAACACCAAAACTA-TAGAATTTCAGTT--GAAATAT----ACTGGCGAAAAAGTGAATTGTCTGACTC
gi|7 : GAAGACCGGTGACCTCT-TGTTCA--AG----AGTTTGTT--GT------GTGCAGAAGTAG---GTC-CA-TTTAAA-ATATAAACTGTG-CATTTCATTTGTGTTTATGTT-TACATTGGCTGTAATTCCTACAATATTATTCATCCCATGTGAAAGTGTAAATCTTTATGTACTAAGATAC-AGGATA--TT---TT--TGTATTTTTCAGGGACTATTTTGTCAGAGTGTATGACGATAGAGACAACTTGAATGAAACATGGGC-ACCA---GCATTTTCCTTCCA-TT----TTGGATAGAG-T---GAT--------GGGACGAATGGA-TA------TTGTG--A-AA-------AAA-CGAGAT--T-AT-----CATGATG-GCATTACAGAGACACAGAAAGACTGCTAAATAGGTC-ACTGCATGGATTAACTTGTGC--TAT--ATGTGTGGGAATGTTTTTAAAATTTGTGACAGAACACCAAATCTA-TAGAATTTCAGTT--GATATAT----ATAAGCGAAAAAGTGACTGATCTGACTc
gi|8 : GGAACAACGGTAGCAACTGTGTTCA--AA----AGGTCGTA--GG------GTAAAAAAATAG---TTC-TA-TTAAGA-ATCAAAGCT-TG-TTGTGTACTTGTTTTAATGTGATG-ATTGACTATAATTCTTCCAATATTATACACCCCCTGTGGACACTTGAGGCTTTAT-TCCTCAGGTATTAAGACA--TTGTGTT--T-TATTTTTCAGGGACTATTTGATTAGAGTGCATGATGGCAGAGATGACTAAGAGGTGCCTTTGTC-ATAAAGTGC---TTGATCAAA-GT----TTGGATAGAGAT---AAT---------GGACACTTGAA-TA------TAGC---A-AA-------AAA-CGAGAT--T-GTGAAGACATCATA-ACATT-CA-----ATAGAAATACTGAAAAGGAAGTCTCCGCCATAGATTAATTTGTGT--TAA--ATGT--------GTTTTT-GAACTTGTGA---------AAA-----------TTCAGTT--GAATTATTAAAATAGTAAGAAAATTGACCGGTC
gi|9 : GGAAGACCAGTGACCTCT-TGTTCA--AA----AATGCATT--GT------GTGTGTTAATAG-----C-CA-AATAAAGATATAAACT-TGACATTTTATTTGTGTTTACGTG-TATATTGGCTATAAGTCATCCAATATTATTCACCCAATGTGAAAGTATAGG-CTTTATTTCCTAGGTTAC-AGGATA--TT---TT--TGTATTTTTCAGGGACTGTTTTGCCAGAGTGTAGGATGAC--AGGCAAC-TGGATGTACCTCAGCC-ACCA---GCTTTATCATGGCA-GT----TTTGATAGAA-T---GAA--------GGGGCAAATGCA-TA------AAGCG--A-AA-------AA
Alignments
lowQualScore : 111111 1111 1111 11111111 111111 1111111 111111
lowQualScore : 4 44 7777 0 99 999999 0000 6 3 3 6 3 3 1 3 4 0 3 44 555 77 9 0 1 0 1 2 555 1 1 5 2222 3 555 33333333 0 3 000000 44 3 0000000 3 55 3 111111 3 55 0 22 88 55 1 3 2 3 1 44 0 7777 0
lowQualScore : . .. .... . .. ...... .... . . . . . . . . . . . .. ... .. . . . . . . ... . . . .... . ... ........ . . ...... .. . ....... . .. . ...... . .. . .. .. .. . . . . . .. . .... .
lowQualScore : 0 66 1111 4 22 222222 4444 7 3 3 7 3 3 8 1 6 3 3 66 888 99 3 4 3 3 9 9 000 9 0 7 1111 1 444 22222222 5 6 555555 66 3 8888888 6 00 6 999999 6 00 5 55 66 00 8 3 2 3 4 66 7 1111 2
consensus : GGAAGACCGGTGACCTCT-TGTTCA--AG----AGGTCGTT--GT------GTGCAGAAATAG---GTC-CA-TTTAAA-ATATAAACTGTG-CATTTCATTTGTGTTTATGTT-TACATTGGCTGTAATTCCTCCAATATTATTCATCCCATGTGAAAGTGTAAGTCTTTATGTACTAAGATAC-AGGATA--TT---TT--TGTATTTTTCAGGGACTATTTTGTCAGAGTGTATGACGATAGAGACAACTTGAATGAAACTCGGGC-ACCA---GCATTTTCNTGACA-TT----TTGGATAGAG-T---GAT--------GGGACGAATGGA-TA------TAGTG--A-AA-------AAA-CGAGAT--T-AT-----CATGATG-GCATTACAGAGACACAGAAAGACTGCTAAATAGGTCTCCTGCATGGATTAACTTGTGC--TAT--ATGTGTGGGAACGTTTTT-AAATTTGTGACAGAACNCCAAAACTA-TAGAATTTCAGTT--GAAATAT----ATAGGCGAAAAAGTGACCGGTCTGACTC
Reference ( family-2953 ) : GGAAGACCGGTGACCTCT-TGTTCA--AG----AGGTCGTT--GT------GTGCAGAAATAG---GTC-CA-TTTAAA-ATATAAACTGTG-CATTTCATTTGTGTTTATGTT-TACATTGGCTGTAATTCCTCCAATATTATTCATCCCATGTGAAAGTGTAAGTCTTTATGTACTAAGATAC-AGGATA--TT---TT--TGTATTTTTCAGGGACTATTTTGTCAGAGTGTATGACGATAGAGACAACTTGAATGAAACTCGGGC-ACCA---GCATTTTCNTGACA-TT----TTGGATAGAG-T---GAT--------GGGACGAATGGA-TA------TAGTG--A-AA-------AAA-CGAGAT--T-AT-----CATGATG-GCATTACAGAGACACAGAAAGACTGCTAAATAGGTCTCCTGCATGGATTAACTTGTGC--TAT--ATGTGTGGGAACGTTTTT-AAATTTGTGACAGAACNCCAAAACTA-TAGAATTTCAGTT--GAAATAT----ATAGGCGAAAAAGTGACCGGTCTGACTC
gi|1 : AGACTGGTGACCTCT-TGTTCAGCAGGTTAAAGTCGAA--GT------GTGCGAAAATAGAGCGTT-CAGTTTAAA-ATATAAACTTGG-AATTGCATTTGTGTTTATGTG-TATAGTGGTTGTAATTCTACCAATATATTTCATCCCGTC----AGTTTAAGGCTATATTTCTTAAGTTAC-AGGATA--TT---TT--T--------CAAGGACTATTTTGTCAGAGTGTAGGATTGCAGAGACAACTTGAATGTAACTCGGCC-ACCA---GCTTTTTCATATCA-GT----TTAGATAAAG-T---GAT--------GAACCGAATGCAGTA-------AATG--A-AAAAAAAACAAA-CGAGATGGTGAT-----GATGATG-GCATTACAGTGGAACAGAAAGACTACTTAATCGGTCTCTTGTACGGATTAAAGCGTGC--TTT--ATGTGTGGCAACGTTTTT-AAACTTGTG-CAAAACTCCAAAATTA-CAGTATTTCAGTTAAAAAATAT----AAAGGCGAAAAATTGACTGGTCTCACTC
gi|10 : TTTTAAAGGACTATTTTGTCAGAGTG-AGGATGACAGAGACAACTTGAATATAACTCGGCC-ACCA---GTTTCTTCGTGACA-GT----TTGGACAGAG-TTTGGATAGAGCAAAGGGACAAAAGTA-TAGAAAAATAGTG--A-AA-------AAAACGAGAT----A-------ATGATG-CCATTCCA---------------------ATGGGTCTCCTGCATGGATAAAAGTATAC--TAT--ATGTGTGGCAACTTTTTT-AAAGTTATGACAAAACTCAAAAATTA-AAGAATTTCAGTT--GAA--AT----ATAGGCGAAATATTAATCAGTCTGACTc
gi|11 : GGAAGAACGGTGACCTCT-TGTTCA--AG----AGGTCGTT--GT------GTGCAGAAATAG---GTC-CA-TTTGAA-ATATAAACTGTG-CATTTCATTTGTGTTTATGTT-TACAATGGCTGTACTTCCTCCAATATTCTTCATCCCATGTGAAAGTGTAAGTCTTTATGTATTAAGATAC-AGGATA--TT---TT--TGTATTTTTCAGGGACTATTTTGTCAGAGTGTATGACGATAGAGACAACTTGAATGAAACTCGGGC-ACCA---GCATTTTCCTGACA-TT----TTGGATt
gi|12 : GAGTGTAGGATTACAGAGACAACTTGAATGTAAGTCTGACCACCA---GCTTTTTCATGACA-GT----TTGGGTAGAG-G---GAA--------GGGACAAATGTA-TA------TAGTG----AA-------AAA-CAA-----T-AT-----GATGATGAGGATTTCAG----------TGACTGCTAAATTGGCATCCTGTCTGGATTAAAGTGTGT--TATTCATGTATGTG-------TT-AAATTTGTGACAGAACTCTAAAATTG-TAG--TTTAAGTT--GAAATAT----ATAGGCG-AAAATTCACTGATCTGATTC
gi|13 : GTTCA--AG----AGGTCACCAGGTCACCAGGTCCAAAAGTAG----TCGTA-TTCAAA-A-----ACTTTG-CATTTCATTTGTGTTTATGTT-TATATTGGCTGTAATTTCTCCAATATTATTCATTCAATGTGAATGTTTAAGGCTTCAATTACTAAAGTAC-GGGATA--TT---TT--T---TTT----------------TCAGAATGTAGGTTTATAGAGACAACTTGAATGAAATTCGGCC-ACCA---GCATTTTCATGACAGTTGAGATTGTATACAG-T---GAc
gi|14 : GTTCA--AG----AGGTCACCAGGTCACCAGGTCCAAAAGTAG----TCGTA-TTCAAA-A-----ACTTTG-CATTTCATTTGTGTTTATGTT-TATATTGGCTGTAATTTCTCCAATATTATTCATTCAATGTGAATGTTTAAGGCTTCAATTACTAAAGTAC-GGGATA--TT---TT--T---TTT----------------TCAGAATGTAGGTTTATAGAGACAACTTGAATGAAATTCGGCC-ACCA---GCATTTTCATGACAGTTGAGATTGTATACAG-T---GAga
gi|15 : AGTGTTA-AA-------AAT-CTAGAT--T-AT-----AAT--T---CA--ACATAAAT---TAAAGGCTGCAAACTATGTCTGCTCTGTGGATTAAA--GTGCCTTAT--ATTTGCAGCAACGCTAAC-AAACCTGTGACACATCTGATAAATCA-GTGAATTCCAGCT--CAGTTAT----ga
gi|16 : TT-ATACTTGTAACAGAACTCCAAAATCAGCAGTATT---------AAGTAT----ATAGGAGAAAAAGTGACCAGTC-GACc
gi|2 : GGAAGACTGGTGACCTCT-TGTTCA--AG----AGTTTGTT--GT------GTGCAGAAGTAG---GTC-CA-TTTAAA-ATGTAAACTGTG-CATTTCATTTGTGTTTATGTT-TACATTGGCTGTAATTCCTCCAATATTATTCATCCCATGTGAAAGTGTAAGTCTTTATGTACTAAGATAC-AGGATA--TT---TTT-TGTATTTTTCAGGGACTATTTTGTCAGAGTGTATGACGATAGACACAACTTGAATGAAACTCGGGC-ACCA---GCATTTTCCTTACA-TT----TTGGATAGAG-T---GAT--------GGGACGAATGGA-TA------TTGTG--A-AA-------AAA-CGAGAT--T-AT-----TATGATG-GCATTACAGAGACACAGAAAGACTGCTAAATAGGTCTCCTGCATGGATTAACTTGTAC--TAT--ATGTGTGGGAATGTTTTT-AAATATGTGACAGAACACCATAACTA-TAGAATTTCAGTT--TAAATAT----ATAAGCGAAAAAGTGACTGATCTGACTC
gi|3 : GAAGACCGGTGACCTCT-TATTAA--AG----AGGTCGTT--GT------GTGCAGAAATAG---GTC-CA-TTTAGA-ATATAAACTGTG-CATTTCATTTGTGTTTATGTT-AACATTGGCTGTAATTCCTCCAATAATATTCATCCCATGTGAAAGTGTAAGTCTTTATGTACTAAGATAC-AGCATA--TT---TTTTTGTATTTTTCAGGCACTATTTTGTCAGAGTGTATGACGATAGAGGAAACTTGACAGACACTCGGGC-ACCA---TCATTTTCCTGACA-TT----TTGGATAGAG-T---GAT--------GGGATGAATGGA-TA------TAGTG--A-AA-------AAA-CGAGAT--T-AT-----CATGATG-GCATTACAGAGACACAGAAAGACTGCTAATTAGGTCTCCTGCATGGATTAACTTGTGC--TAT--ATGTGTGGGAATGTTTTT-AAATTTGTGACAGAACACCAAAACTA-TAGAATTTCGGTT--GAAATAT----ATAGGCGAAAAAGTGACTGGTCTGACT
gi|4 : GGAAGACCTGTGACCTCT-TGTTAA--AG----AGGTCATT--GT------GTGCAGTAATAG---GTC-CA-TTTAAA-ATATAAACTGTG-CAATTCATTTGTGTTTATGTT-TACATTGGCTGTAATTCCTCCAATATTATTCATCCCATGTGAAAGTTTAAGTCTTTATGTACTAAGATAC-AGGATA--TT---TT--TGTATTTTTCAGTGACTACTTTGTCAGAGTGTATGAGGATAGAGACAACTTGACTGAAACTCGGGC-ACCA---GCATTTTCCTGACA-TT----TTGGATAGAG-T---GAT--------GGGACGAATGGA-TA------TAGTG--A-AA-------AAA-TGAGAT--T-AT-----CATGATG-GCATTACAGAGACACAGAAAGACTGCTAAATAGGTCTCCTGCGTGGATTAACTTGTGC--TAT--ATGTGTGGGAATGGTTTT-AAATTTGTGACAGAACACCAAAACTA-TAGAATTTCAGTT--GAAATAT----ATAGGCAAAAAAGGGACTGGTCTGACTC
gi|5 : GGAAGACCGGTGACCTCT-TGTTCA--AG----AGTTCGTT--GT------GTGCAGAAATAG---GTC-CA-TTTCAA-ATATAAACTGTG-CATTTCATTTGTGTTTATGTT-AACATTGGCTGTAATTCCTCCAATATTATTCATCCCATGTGAAAGTGTAAGTCTTTATGTACTAAGATAC-AGGATA--TT---TT--TATATTTTTCAGGGACTATTTTGTCAGAGTGTATGACGATAGAGACAAATAGACTGAAACTCGGGC-ACCA---GCATTTTCCTGACA-TT----TTGGATAGAG-T---GGT--------GGGACGAATGGA-TA------TAGTG--A-AA-------AAA-CGAGAG--T-AT-----CATGATG-GCATTACAGAGACACAGAAAGACTGCTAAATAGGTCTCCTGCATTGATTAACTTGTGC--TAT--ATGTGTGGGAATGTTTTT-AAATTTGTGACAGAACTCCAACACTA-TAGAATTTCAGTT--GAAATAC----ATAGGCGAACAAGTTACCGGTCTGACTC
gi|6 : GGAAGACCAGTCACCTCT-TGTTCA--AG----AGTTCGTT--GT------GTGCAGAAGTAG---GTC-CA-TTTAAA-ATATAAACTTTG-CATTACATTTGTGTTTATGTT-TACATTGGCTGTAATTCCTCCAATATTATTAATCCCATGTGAAAGTGTAAGTCTTTATTTACTAAGGTAC-AGGATATTTT---TT--TATATTTTTCAGGGACTATTTTGTCAGAGTGTATGACGATAGAGACAACTTGAATGAAACTCGGGC-ACCA---GCATTTTCCTGACA-TT----TTGGATAGAG-T---GAT--------GGGACGAATGGA-TA------TAGTG--ATAA-------AAA-CGAGAT--T------------ATG-GTATAACAAAGACACAGACAGACTGCTAATTATGTCTCCTGCATGGATTTACTTG-ACA-TAT--ATGTGTGGGAACGTTTTT-AAATTTGTGACAAAACACCAAAACTA-TAGAATTTCAGTT--GAAATAT----ACTGGCGAAAAAGTGAATTGTCTGACTC
gi|7 : GAAGACCGGTGACCTCT-TGTTCA--AG----AGTTTGTT--GT------GTGCAGAAGTAG---GTC-CA-TTTAAA-ATATAAACTGTG-CATTTCATTTGTGTTTATGTT-TACATTGGCTGTAATTCCTACAATATTATTCATCCCATGTGAAAGTGTAAATCTTTATGTACTAAGATAC-AGGATA--TT---TT--TGTATTTTTCAGGGACTATTTTGTCAGAGTGTATGACGATAGAGACAACTTGAATGAAACATGGGC-ACCA---GCATTTTCCTTCCA-TT----TTGGATAGAG-T---GAT--------GGGACGAATGGA-TA------TTGTG--A-AA-------AAA-CGAGAT--T-AT-----CATGATG-GCATTACAGAGACACAGAAAGACTGCTAAATAGGTC-ACTGCATGGATTAACTTGTGC--TAT--ATGTGTGGGAATGTTTTTAAAATTTGTGACAGAACACCAAATCTA-TAGAATTTCAGTT--GATATAT----ATAAGCGAAAAAGTGACTGATCTGACTc
gi|8 : GGAACAACGGTAGCAACTGTGTTCA--AA----AGGTCGTA--GG------GTAAAAAAATAG---TTC-TA-TTAAGA-ATCAAAGCT-TG-TTGTGTACTTGTTTTAATGTGATG-ATTGACTATAATTCTTCCAATATTATACACCCCCTGTGGACACTTGAGGCTTTAT-TCCTCAGGTATTAAGACA--TTGTGTT--T-TATTTTTCAGGGACTATTTGATTAGAGTGCATGATGGCAGAGATGACTAAGAGGTGCCTTTGTC-ATAAAGTGC---TTGATCAAA-GT----TTGGATAGAGAT---AAT---------GGACACTTGAA-TA------TAGC---A-AA-------AAA-CGAGAT--T-GTGAAGACATCATA-ACATT-CA-----ATAGAAATACTGAAAAGGAAGTCTCCGCCATAGATTAATTTGTGT--TAA--ATGT--------GTTTTT-GAACTTGTGA---------AAA-----------TTCAGTT--GAATTATTAAAATAGTAAGAAAATTGACCGGTC
gi|9 : GGAAGACCAGTGACCTCT-TGTTCA--AA----AATGCATT--GT------GTGTGTTAATAG-----C-CA-AATAAAGATATAAACT-TGACATTTTATTTGTGTTTACGTG-TATATTGGCTATAAGTCATCCAATATTATTCACCCAATGTGAAAGTATAGG-CTTTATTTCCTAGGTTAC-AGGATA--TT---TT--TGTATTTTTCAGGGACTGTTTTGCCAGAGTGTAGGATGAC--AGGCAAC-TGGATGTACCTCAGCC-ACCA---GCTTTATCATGGCA-GT----TTTGATAGAA-T---GAA--------GGGGCAAATGCA-TA------AAGCG--A-AA-------AA
blockSeqs : G . . AG CACCAG G G . G G A A G T G T TT GTG TT G G C C AGT T G G GAGA A TTG AGAGCAAA . GAAAAA TT T . A . . GAAGAC A TA AG CT TC C A T G A . TAAA
blockSeqs : . . . AG CACCAG G G . . T . . T G T . . . T G T G . . A C G GAGA . . . . . . . . . . . G . GA AG A . C . T . A . .
blockSeqs : . . . . . G . . . T . . T G T . . . . G G A . . T A . . . . . . . . . . . . . A . GA CT . . T . T . T . .
blockSeqs : . . . . . G . . . G . . G T G . . . . G G C . . A A . . . . . . . . . . . . . T . GA CT . . T . T . A . .
blockSeqs : . . . . . G . . . G . . G T G . . . . A G C . . A A . . . . . . . . . . . . . C . GA CT . . T . A . A . .
blockSeqs : . . . . . G . . . G . . T T G . . . . A T G . . A C . . . . . . . . . . . . . C . AA CT . . T . A . A . .
blockSeqs : . . . . . G . . . G . . G T G . . . . G T G . . A C . . . . . . . . . . . . . C . GA CT . . C . A . A . .
blockSeqs : . . . . . T . . . T . . G T T . . . . G T G . . A C . . . . . . . . . . . . . C . G CT . . T . T . A . .
blockSeqs : . . . . . . . . . G . . G T G . . . . . T G . . A C . . . . . . . . . . . . . . . . TT . . . . A . A . .
blockSeqs : . . . . . . . . . . . T G T . . . . . T G . . A C . . . . . . . . . . . . . . . . A . . . . A . . . .
blockSeqs : . . . . . . . . . . . A . . . . . . . T G . . A C . . . . . . . . . . . . .
blockSeqs : T T . . T A . . . .
blockSeqs : G C . . . A . .
blockSeqCons : ** **** G*** ******* ** **
originalCons : GGAAGACCGGTGACCTCT-TGTTCA--AG----AGGTCGTT--GT------GTGCAGAAATAG---GTC-CA-TTTAAA-ATATAAACTGTG-CATTTCATTTGTGTTTATGTT-TACATTGGCTGTAATTCCTCCAATATTATTCATCCCATGTGAAAGTGTAAGTCTTTATGTACTAAGATAC-AGGATA--TT---TT--TGTATTTTTCAGGGACTATTTTGTCAGAGTGTATGACGATAGAGACAACTTGAATGAAACTCGGGC-ACCA---GCATTTTCNTGACA-TT----TTGGATAGAG-T---GAT--------GGGACGAATGGA-TA------TAGTG--A-AA-------AAA-CGAGAT--T-AT-----CATGATG-GCATTACAGAGACACAGAAAGACTGCTAAATAGGTCTCCTGCATGGATTAACTTGTGC--TAT--ATGTGTGGGAACGTTTTT-AAATTTGTGACAGAACNCCAAAACTA-TAGAATTTCAGTT--GAAATAT----ATAGGCGAAAAAGTGACCGGTCTGACTC
finalCons : GGAAGACCGGTGACCTCT-TGTTCA--AG----AGGTCGTT--GT------GTGCAGAAATAGG---TC-CA-TTTAAA-ATATAAACTGTG-CATTTCATTTGTGTTTATGTT-TACATTGGCTGTAATTCCTCCAATATTATTCATCCCATGTGAAAGTGTAAGTCTTTATGTACTAAGATAC-AGGATA--TT---TT--TGTATTTTTCAGGGACTATTTTGTCAGAGTGTATGACGATAGAGACAACTTGAATGAAACTCGGGC-ACCA---GCATTTTCNTGACA-TT----TTGGATAGAG-T---GAT--------GGGACGAATGGA-TA------TAGTG--A-AA-------AAA-CGAGAT--T-AT-----CATGATG-GCATTACAGAGACACAGAAAGACTGCTAAATAGGTCTCCTGCATGGATTAACTTGTGC--TAT--ATGTGTGGGAACGTTTTT-AAATTTGTGACAGAACNCCAAAACTA-TAGAATTTCAGTT--GAAATAT----ATAGGCGAAAAAGTGACCGGTCTGACTC
Alignments
lowQualScore : 111111 1111 1111 11111111 111111 1111111 111111
lowQualScore : 4 44 7777 0 99 999999 0000 6 3 3 6 3 3 1 3 4 0 3 44 555 77 9 0 1 0 1 2 555 1 1 5 2222 3 555 33333333 0 3 000000 44 3 0000000 3 55 3 111111 3 55 0 22 88 55 1 3 2 3 1 44 0 7777 0
lowQualScore : . .. .... . .. ...... .... . . . . . . . . . . . .. ... .. . . . . . . ... . . . .... . ... ........ . . ...... .. . ....... . .. . ...... . .. . .. .. .. . . . . . .. . .... .
lowQualScore : 0 66 1111 4 22 222222 4444 7 3 3 7 3 3 8 1 6 3 3 66 888 99 3 4 3 3 9 9 000 9 0 7 1111 1 444 22222222 5 6 555555 66 3 8888888 6 00 6 999999 6 00 5 55 66 00 8 3 2 3 4 66 7 1111 2
consensus : GGAAGACCGGTGACCTCT-TGTTCA--AG----AGGTCGTT--GT------GTGCAGAAATAG---GTC-CA-TTTAAA-ATATAAACTGTG-CATTTCATTTGTGTTTATGTT-TACATTGGCTGTAATTCCTCCAATATTATTCATCCCATGTGAAAGTGTAAGTCTTTATGTACTAAGATAC-AGGATA--TT---TT--TGTATTTTTCAGGGACTATTTTGTCAGAGTGTATGACGATAGAGACAACTTGAATGAAACTCGGGC-ACCA---GCATTTTCNTGACA-TT----TTGGATAGAG-T---GAT--------GGGACGAATGGA-TA------TAGTG--A-AA-------AAA-CGAGAT--T-AT-----CATGATG-GCATTACAGAGACACAGAAAGACTGCTAAATAGGTCTCCTGCATGGATTAACTTGTGC--TAT--ATGTGTGGGAACGTTTTT-AAATTTGTGACAGAACNCCAAAACTA-TAGAATTTCAGTT--GAAATAT----ATAGGCGAAAAAGTGACCGGTCTGACTC
Reference ( family-2953 ) : GGAAGACCGGTGACCTCT-TGTTCA--AG----AGGTCGTT--GT------GTGCAGAAATAG---GTC-CA-TTTAAA-ATATAAACTGTG-CATTTCATTTGTGTTTATGTT-TACATTGGCTGTAATTCCTCCAATATTATTCATCCCATGTGAAAGTGTAAGTCTTTATGTACTAAGATAC-AGGATA--TT---TT--TGTATTTTTCAGGGACTATTTTGTCAGAGTGTATGACGATAGAGACAACTTGAATGAAACTCGGGC-ACCA---GCATTTTCNTGACA-TT----TTGGATAGAG-T---GAT--------GGGACGAATGGA-TA------TAGTG--A-AA-------AAA-CGAGAT--T-AT-----CATGATG-GCATTACAGAGACACAGAAAGACTGCTAAATAGGTCTCCTGCATGGATTAACTTGTGC--TAT--ATGTGTGGGAACGTTTTT-AAATTTGTGACAGAACNCCAAAACTA-TAGAATTTCAGTT--GAAATAT----ATAGGCGAAAAAGTGACCGGTCTGACTC
gi|1 : AGACTGGTGACCTCT-TGTTCAGCAGGTTAAAGTCGAA--GT------GTGCGAAAATAGAGCGTT-CAGTTTAAA-ATATAAACTTGG-AATTGCATTTGTGTTTATGTG-TATAGTGGTTGTAATTCTACCAATATATTTCATCCCGTC----AGTTTAAGGCTATATTTCTTAAGTTAC-AGGATA--TT---TT--T--------CAAGGACTATTTTGTCAGAGTGTAGGATTGCAGAGACAACTTGAATGTAACTCGGCC-ACCA---GCTTTTTCATATCA-GT----TTAGATAAAG-T---GAT--------GAACCGAATGCAGTA-------AATG--A-AAAAAAAACAAA-CGAGATGGTGAT-----GATGATG-GCATTACAGTGGAACAGAAAGACTACTTAATCGGTCTCTTGTACGGATTAAAGCGTGC--TTT--ATGTGTGGCAACGTTTTT-AAACTTGTG-CAAAACTCCAAAATTA-CAGTATTTCAGTTAAAAAATAT----AAAGGCGAAAAATTGACTGGTCTCACTC
gi|10 : TTTTAAAGGACTATTTTGTCAGAGTG-AGGATGACAGAGACAACTTGAATATAACTCGGCC-ACCA---GTTTCTTCGTGACA-GT----TTGGACAGAG-TTTGGATAGAGCAAAGGGACAAAAGTA-TAGAAAAATAGTG--A-AA-------AAAACGAGAT----A-------ATGATG-CCATTCCA---------------------ATGGGTCTCCTGCATGGATAAAAGTATAC--TAT--ATGTGTGGCAACTTTTTT-AAAGTTATGACAAAACTCAAAAATTA-AAGAATTTCAGTT--GAA--AT----ATAGGCGAAATATTAATCAGTCTGACTc
gi|11 : GGAAGAACGGTGACCTCT-TGTTCA--AG----AGGTCGTT--GT------GTGCAGAAATAG---GTC-CA-TTTGAA-ATATAAACTGTG-CATTTCATTTGTGTTTATGTT-TACAATGGCTGTACTTCCTCCAATATTCTTCATCCCATGTGAAAGTGTAAGTCTTTATGTATTAAGATAC-AGGATA--TT---TT--TGTATTTTTCAGGGACTATTTTGTCAGAGTGTATGACGATAGAGACAACTTGAATGAAACTCGGGC-ACCA---GCATTTTCCTGACA-TT----TTGGATt
gi|12 : GAGTGTAGGATTACAGAGACAACTTGAATGTAAGTCTGACCACCA---GCTTTTTCATGACA-GT----TTGGGTAGAG-G---GAA--------GGGACAAATGTA-TA------TAGTG----AA-------AAA-CAA-----T-AT-----GATGATGAGGATTTCAG----------TGACTGCTAAATTGGCATCCTGTCTGGATTAAAGTGTGT--TATTCATGTATGTG-------TT-AAATTTGTGACAGAACTCTAAAATTG-TAG--TTTAAGTT--GAAATAT----ATAGGCG-AAAATTCACTGATCTGATTC
gi|13 : GTTCA--AG----AGGTCACCAGGTCACCAGGTCCAAAAGTAG----TCGTA-TTCAAA-A-----ACTTTG-CATTTCATTTGTGTTTATGTT-TATATTGGCTGTAATTTCTCCAATATTATTCATTCAATGTGAATGTTTAAGGCTTCAATTACTAAAGTAC-GGGATA--TT---TT--T---TTT----------------TCAGAATGTAGGTTTATAGAGACAACTTGAATGAAATTCGGCC-ACCA---GCATTTTCATGACAGTTGAGATTGTATACAG-T---GAc
gi|14 : GTTCA--AG----AGGTCACCAGGTCACCAGGTCCAAAAGTAG----TCGTA-TTCAAA-A-----ACTTTG-CATTTCATTTGTGTTTATGTT-TATATTGGCTGTAATTTCTCCAATATTATTCATTCAATGTGAATGTTTAAGGCTTCAATTACTAAAGTAC-GGGATA--TT---TT--T---TTT----------------TCAGAATGTAGGTTTATAGAGACAACTTGAATGAAATTCGGCC-ACCA---GCATTTTCATGACAGTTGAGATTGTATACAG-T---GAga
gi|15 : AGTGTTA-AA-------AAT-CTAGAT--T-AT-----AAT--T---CA--ACATAAAT---TAAAGGCTGCAAACTATGTCTGCTCTGTGGATTAAA--GTGCCTTAT--ATTTGCAGCAACGCTAAC-AAACCTGTGACACATCTGATAAATCA-GTGAATTCCAGCT--CAGTTAT----ga
gi|16 : TT-ATACTTGTAACAGAACTCCAAAATCAGCAGTATT---------AAGTAT----ATAGGAGAAAAAGTGACCAGTC-GACc
gi|2 : GGAAGACTGGTGACCTCT-TGTTCA--AG----AGTTTGTT--GT------GTGCAGAAGTAG---GTC-CA-TTTAAA-ATGTAAACTGTG-CATTTCATTTGTGTTTATGTT-TACATTGGCTGTAATTCCTCCAATATTATTCATCCCATGTGAAAGTGTAAGTCTTTATGTACTAAGATAC-AGGATA--TT---TTT-TGTATTTTTCAGGGACTATTTTGTCAGAGTGTATGACGATAGACACAACTTGAATGAAACTCGGGC-ACCA---GCATTTTCCTTACA-TT----TTGGATAGAG-T---GAT--------GGGACGAATGGA-TA------TTGTG--A-AA-------AAA-CGAGAT--T-AT-----TATGATG-GCATTACAGAGACACAGAAAGACTGCTAAATAGGTCTCCTGCATGGATTAACTTGTAC--TAT--ATGTGTGGGAATGTTTTT-AAATATGTGACAGAACACCATAACTA-TAGAATTTCAGTT--TAAATAT----ATAAGCGAAAAAGTGACTGATCTGACTC
gi|3 : GAAGACCGGTGACCTCT-TATTAA--AG----AGGTCGTT--GT------GTGCAGAAATAG---GTC-CA-TTTAGA-ATATAAACTGTG-CATTTCATTTGTGTTTATGTT-AACATTGGCTGTAATTCCTCCAATAATATTCATCCCATGTGAAAGTGTAAGTCTTTATGTACTAAGATAC-AGCATA--TT---TTTTTGTATTTTTCAGGCACTATTTTGTCAGAGTGTATGACGATAGAGGAAACTTGACAGACACTCGGGC-ACCA---TCATTTTCCTGACA-TT----TTGGATAGAG-T---GAT--------GGGATGAATGGA-TA------TAGTG--A-AA-------AAA-CGAGAT--T-AT-----CATGATG-GCATTACAGAGACACAGAAAGACTGCTAATTAGGTCTCCTGCATGGATTAACTTGTGC--TAT--ATGTGTGGGAATGTTTTT-AAATTTGTGACAGAACACCAAAACTA-TAGAATTTCGGTT--GAAATAT----ATAGGCGAAAAAGTGACTGGTCTGACT
gi|4 : GGAAGACCTGTGACCTCT-TGTTAA--AG----AGGTCATT--GT------GTGCAGTAATAG---GTC-CA-TTTAAA-ATATAAACTGTG-CAATTCATTTGTGTTTATGTT-TACATTGGCTGTAATTCCTCCAATATTATTCATCCCATGTGAAAGTTTAAGTCTTTATGTACTAAGATAC-AGGATA--TT---TT--TGTATTTTTCAGTGACTACTTTGTCAGAGTGTATGAGGATAGAGACAACTTGACTGAAACTCGGGC-ACCA---GCATTTTCCTGACA-TT----TTGGATAGAG-T---GAT--------GGGACGAATGGA-TA------TAGTG--A-AA-------AAA-TGAGAT--T-AT-----CATGATG-GCATTACAGAGACACAGAAAGACTGCTAAATAGGTCTCCTGCGTGGATTAACTTGTGC--TAT--ATGTGTGGGAATGGTTTT-AAATTTGTGACAGAACACCAAAACTA-TAGAATTTCAGTT--GAAATAT----ATAGGCAAAAAAGGGACTGGTCTGACTC
gi|5 : GGAAGACCGGTGACCTCT-TGTTCA--AG----AGTTCGTT--GT------GTGCAGAAATAG---GTC-CA-TTTCAA-ATATAAACTGTG-CATTTCATTTGTGTTTATGTT-AACATTGGCTGTAATTCCTCCAATATTATTCATCCCATGTGAAAGTGTAAGTCTTTATGTACTAAGATAC-AGGATA--TT---TT--TATATTTTTCAGGGACTATTTTGTCAGAGTGTATGACGATAGAGACAAATAGACTGAAACTCGGGC-ACCA---GCATTTTCCTGACA-TT----TTGGATAGAG-T---GGT--------GGGACGAATGGA-TA------TAGTG--A-AA-------AAA-CGAGAG--T-AT-----CATGATG-GCATTACAGAGACACAGAAAGACTGCTAAATAGGTCTCCTGCATTGATTAACTTGTGC--TAT--ATGTGTGGGAATGTTTTT-AAATTTGTGACAGAACTCCAACACTA-TAGAATTTCAGTT--GAAATAC----ATAGGCGAACAAGTTACCGGTCTGACTC
gi|6 : GGAAGACCAGTCACCTCT-TGTTCA--AG----AGTTCGTT--GT------GTGCAGAAGTAG---GTC-CA-TTTAAA-ATATAAACTTTG-CATTACATTTGTGTTTATGTT-TACATTGGCTGTAATTCCTCCAATATTATTAATCCCATGTGAAAGTGTAAGTCTTTATTTACTAAGGTAC-AGGATATTTT---TT--TATATTTTTCAGGGACTATTTTGTCAGAGTGTATGACGATAGAGACAACTTGAATGAAACTCGGGC-ACCA---GCATTTTCCTGACA-TT----TTGGATAGAG-T---GAT--------GGGACGAATGGA-TA------TAGTG--ATAA-------AAA-CGAGAT--T------------ATG-GTATAACAAAGACACAGACAGACTGCTAATTATGTCTCCTGCATGGATTTACTTG-ACA-TAT--ATGTGTGGGAACGTTTTT-AAATTTGTGACAAAACACCAAAACTA-TAGAATTTCAGTT--GAAATAT----ACTGGCGAAAAAGTGAATTGTCTGACTC
gi|7 : GAAGACCGGTGACCTCT-TGTTCA--AG----AGTTTGTT--GT------GTGCAGAAGTAG---GTC-CA-TTTAAA-ATATAAACTGTG-CATTTCATTTGTGTTTATGTT-TACATTGGCTGTAATTCCTACAATATTATTCATCCCATGTGAAAGTGTAAATCTTTATGTACTAAGATAC-AGGATA--TT---TT--TGTATTTTTCAGGGACTATTTTGTCAGAGTGTATGACGATAGAGACAACTTGAATGAAACATGGGC-ACCA---GCATTTTCCTTCCA-TT----TTGGATAGAG-T---GAT--------GGGACGAATGGA-TA------TTGTG--A-AA-------AAA-CGAGAT--T-AT-----CATGATG-GCATTACAGAGACACAGAAAGACTGCTAAATAGGTC-ACTGCATGGATTAACTTGTGC--TAT--ATGTGTGGGAATGTTTTTAAAATTTGTGACAGAACACCAAATCTA-TAGAATTTCAGTT--GATATAT----ATAAGCGAAAAAGTGACTGATCTGACTc
gi|8 : GGAACAACGGTAGCAACTGTGTTCA--AA----AGGTCGTA--GG------GTAAAAAAATAG---TTC-TA-TTAAGA-ATCAAAGCT-TG-TTGTGTACTTGTTTTAATGTGATG-ATTGACTATAATTCTTCCAATATTATACACCCCCTGTGGACACTTGAGGCTTTAT-TCCTCAGGTATTAAGACA--TTGTGTT--T-TATTTTTCAGGGACTATTTGATTAGAGTGCATGATGGCAGAGATGACTAAGAGGTGCCTTTGTC-ATAAAGTGC---TTGATCAAA-GT----TTGGATAGAGAT---AAT---------GGACACTTGAA-TA------TAGC---A-AA-------AAA-CGAGAT--T-GTGAAGACATCATA-ACATT-CA-----ATAGAAATACTGAAAAGGAAGTCTCCGCCATAGATTAATTTGTGT--TAA--ATGT--------GTTTTT-GAACTTGTGA---------AAA-----------TTCAGTT--GAATTATTAAAATAGTAAGAAAATTGACCGGTC
gi|9 : GGAAGACCAGTGACCTCT-TGTTCA--AA----AATGCATT--GT------GTGTGTTAATAG-----C-CA-AATAAAGATATAAACT-TGACATTTTATTTGTGTTTACGTG-TATATTGGCTATAAGTCATCCAATATTATTCACCCAATGTGAAAGTATAGG-CTTTATTTCCTAGGTTAC-AGGATA--TT---TT--TGTATTTTTCAGGGACTGTTTTGCCAGAGTGTAGGATGAC--AGGCAAC-TGGATGTACCTCAGCC-ACCA---GCTTTATCATGGCA-GT----TTTGATAGAA-T---GAA--------GGGGCAAATGCA-TA------AAGCG--A-AA-------AA