lowQualScore : 11111111 1111 11111111111 111111111111 222222222222222222222222222222222222222222222 1 222 11 2222222222 11 1
lowQualScore : 2 99999999 2 2 666 99999999 33 0000 22222222222 111111111111 8 222222222222222222222222222222222222222222222 66666 33 7 33 2 6666 9999999 6 1 3 555 000 2 4 22 55 33 7777777777 666 4 666 0 66 5 6
lowQualScore : . ........ . . ... ........ .. .... ........... ............ . ............................................. ..... .. . .. . .... ....... . . . ... ... . . .. .. .. .......... ... . ... . .. . .
lowQualScore : 5 11111111 5 4 444 55555555 22 5555 77777777777 444444444444 4 888888888888888888888888888888888888888888888 22222 77 4 77 7 1111 3333333 6 3 1 444 666 4 9 22 66 22 8888888888 555 9 444 7 33 0 0
consensus : TAGATGAATTATATTCCATTACT--------CAGAACAAAACAT-TT--GACTTACAG---NATAT--TTCGACCGTATCAC------GC--AGTCTTC------------ATCAGC--------T-------TTGTG--------C---A-----TG---AAT-----GA--CCC--AG-CA----CAA-------AGCTGATGAAGACTG-TG---TGATACGGTCGAAATATNCTGT-AAGTCAA--ATGTTTTGTTCTG--AGT--AAATNGA-A---TATAATTCATCTAAGATG---TTAAATCCAGAACAAGAGAA-CAACCTAAATT
Reference ( gi|6 ) : TAGATGAACTATATTCCATTACT--------CAGAATAAAACAT-TC--GACTTGCAT---AATAT--TTCGGCCATATCAC------GC--AGTCTTC------------ATAAGT--------T-------TTGTG--------C---A-----AG---AAT-----GA--CAC--AG-CA----CAA-------AGCTGATGGATACTG-TG---TGATGCCGTCAAAATATTCTGC-AAGTCAA--ATGTTTTGTTCTG--AGT--AAATTGT-A---TATAGTTCATCTAAGATG---TTAAATCCAGAACAAGAGAA-AAACCGAAACT
gi|4 : TAGATGATCTTTATTCCATTATG--------CAGAACAAAACAT-TT--GATTTACGG---AATAT--TTATACCAAATCA------------GTCTTC------------ATCATC--------T-------TTGTG--------CCT-A-----TGTCAAAC-----GA--TACTAGG-CATGAACAATGACCCCAGCTGATGAAGACTG-TG---TGATACAGCCGAAATATTCTGT-AAATCAA--ATATTTTGTTCTG--AGT--AA--TGTAA---TATAATT
gi|10 : aacaatatacattgttctcttgttctggatttaatatctTAGATGAATTATATTCCATTACT--------CAGAATAAAACAT-TT--CACTTACAG---TATAT--TTCGACCGTATCAA------AC--AGTCTTC------------ATCAGC--------T-------TTGTG--------C---aaaactcaatgaagtt
gi|5 : aacaatataagttgttctcttgttctggatttgaaactTAGATGAATTATATTTCATTACT--------CAGAATAAAACAT-TT--GACTTAGAG---TATAT--TTTAACTGTATAA--------C--AGTCTTC------------ATCAGC--------T-------TTGTG------------A-----GG---AAT-----tgggtcatttatacataatataggtaccatctgtgatattttgggaatat
gi|3 : catacaatgtgaggatttaatttgtttaattcgaatttacatgccataataactgatacaacaatataggttgttctcttgttctggatttaacatctTAGATGAACTATATTCCATTACT--------CAGAACAAAACAT-TT--TACTTACAG---AATAA--TTCGACCGTATCAC------AC--AGTCTTC------------AATAGC--------T-------TTGTG--------C---cattcatgcatagtatcacgtggcataggaagataagt
gi|3 : ttTAGATGAACTATATTCGATTACtgggtcattcatgcatagaatcatgtgacataggaagatcacgtgatacaaggagagcattgtacacttgaggtaactccagtccctcatcccggttgaatgacggccgtcgtaatcgaatatagttcatctaagatgttaaatccagaagaagagaacaacctatattgttgt
gi|1 : tttagatgaactatattccattactcagaacaaaacattttacttacagaataattcgaccgtatcacacagtcttcaatagctttgtgctgggtcattcatgcatagaatcatgtgacataggaagatcacgtgatacaaggagagcattgtacacttgaggtaactccagtccctcatcccggttgaatgacggccgtcTAGAAGAACTATATTCCATTTCC--------CAGAACAAAACGG-TC--GACCTAGAG---AATAT--TTCGACCGTATCAC------AC--AGTCTTC------------ATCAGC--------T-------TTGTG--------C---agatgttaaatccagaagaagagaacaacctatattgttgt
gi|14 : ctTAGATGAA-TGTATTCACTTACT--------CAGAACAAAACTT-TT--TACTTACAG---TATAT--TTTGACTGTATCA--------C--AGTCTTC------------ATCAGC--------C-------TAGTG--------C---C-----AG---tttgtcattcactcacagcatcacgtgacataggacgagagcattgtacactggaggtatagcaagtccctcgtcccggctgagtgacggccgttgttgttttatcgttaccacctctttgacacgtcgcttaatacggatgtcttcggatgttagtatcatggtgtattcaggtttggtgtgatgtccagtattgtcacaatgttcatgaatagccgagttcggtctaaccgcgtgttctttcattctaatgtcaagggatcatccaagttcaccaacataatctctatcacgttaatggaatatatttaatctaatatgttaaactcggaacaagagaacaacctatattgttgcattacacctgttatctcattgaagtcctttactgattccggcagcatttgcttgtgtttt
gi|9 : atttcaTAGATGAATTATATATTATGATTTTGACTTACAGTATAATTCAT-TCTTGTTTCACGT---GATAT--TTT---TATGTCA-----------AGTGATA------------GTAA---------------------T---------C---A-----TC---AAT-----GA--CCC--CG-CA----GAA-------A-TTGATGAAGACTG-TG---TGATATGGTCGAAATAgtcagtgatgcgtggtggtacgcgacatgggat
gi|2 : agtgTAGATTAATTAAATTCCATTACT--------CAGAACAAAACAT-TT--GACTTTCAG---TATAT--TTCGagatgttaaatacagaacaacagaacatcatatatttttgt
gi|7 : tgaaggggattttggtatacgctcataatacacattagttttaacttgattaatgtaatcttaagcaataaataaatacattgtgcatcaaagtaattcataatatttgtgaaatatgttaagtagttttttaattgcgttatatggaccccagtggaataaagtcctcggactttacttggctttccaagcatttcatgtcactttaagatcactgttatttcatttttcaacttatgaactgttaataataagttttcaagtaaaataagacattcaatttgtaagtatttatactgtgataaggtactgaaattgtgtgatacatttatgacattctatgatgttcatagaaaataatagatcaataatttaacaataaagattgttctctagttctccagttaacatctTAGATGATTTATATTCCATTACT--------CAGAACAAAACAT-TC--GAC---CATCGAAATAT--
gi|17 : agttagatatttagttttattctgctcccatcatggcatgtcatacagcatatatatatacaaatttacaaaagtaatgataaaaagctaataacattaaaatgatttgttttatctaaaatagttattgatctTAGATTAATTATATTCCATTACT--------CAGAACAAAACAT-TT--GGTCTTCAT---
gi|20 : ttacaaataagtgtctTAGATGAACTTTATTCAATGACT--------CAGATCAAAACAT-TT--GGCTTcagctttgtgctgggtctctca
gi|4 : tataatcagcatgtccttctAATTATATTACATTACT--------CAGAACAAAATAT-TT--GATTTACAG---AATAT--TTCGGCTGTATCAC------AC--AGTCTTC------------ATCAGC--------TGGGGTCATTGTT--------C---ATGCCTAG---TATCGTTTGA--CAT--AGGCA----CAA-------AGATGATGAAGACTGATT---TGGTAT-----AAATATTCCGT-AAATCAA--ATGTTTTGTTCTG--CAT--AA-TGGA-A---TAAAGATCATCTAAGATA---TTAAATCCAGAACAAGAGAA-CAA
gi|11 : aacaatatacaATATTCATTTACT--------CAGAACAAAACTT-TT--GACTTA-AC---AGTATAGTCCAACTTTA--AC------GCAAAGTCTAC------------ATCAGC--------T-------TTGTG--------aaaactcaatgaagtt
gi|13 : catttagtttcgtctttgataaagTATTCCTTTATT--------CAGAACAAAACAT-TT--GACTTACAG---AATAT--TTCGACCGTATCAC------AC--AGTATTC------------ATCAGC--------G-------CTGTG--------C---ttgagtcagtggtgtatagtgtcacataacgtacgacgatcacgtgacacaag
gi|8 : TACTTTATTACT--------CAGAACAAAACAT-TT--GAC---AAT----ATAT--TTCG--------AC------AC--AGTCTTC------------ATCAGC--------T-------CTGTA--------C---tgggtcatttatgcatatttatcatgtgatataggaagaccacgtgatacaaaatagacttcagaattaatatat
gi|12 : acaaactataggttgttctcttccatATTACT--------CAGAACAAAATATATT--GACTTACAG---CATAT--TTTGACCGTATCAC------AT--AATCTTC------------ATCAGC--------T-------TTGTG--------C---tgggtcagatatgcatagaatcacatgacttaggatgatcacgtgacacaaggagagcattctatacaagagttaacttaaatccttcatcct
gi|16 : aacaatttaggttgttctcttgctctgaaattaacatcttagATAAAACTT-TT--GATTT--AT---TATAT--TTCGACTTTATCACTTTATCAC--AGTCTTC------------ATCAGT--------T-------AGGTG--------CTTGA-----TC---AGT-----GATGCAC--AG-Ctgagtcatccatgcatagtatcacgtgacataggaagat
gi|13 : TAT--TTTG----TATCAC------GT--GGTCTTCCTATATCACATGATAAAT------------------ATG--------C---A-----TA---AAT-----GA--CCC--AG-CA----CAG-------CGCTGATGAATACTG-TG---TGATACGGTCGAAATATTCTGT-AAGTCAA--ATGTTTTGTTCTG--AAT--AAAgtcacatgacgaaggatg
gi|9 : tattccTAT--TTCGACCATATCAC------AC--AGTCTTC------------ATCAAT--------T-------TC-TG--------C---G-----GG-----------GT--CAT------------------------TGATGATTACTA-TCACTTGA---CATAAAAATATCACGT-GAAACAAGAATGAATTATACTGTAAGTCAAAATCAT-AATATATAATTCATCTAAGATG---TTAAATACAGAACAACAGAA-gacttcagaattaatatat
gi|3 : agtgTATCAC------GT--GATCTTC------------CTATGTCACATGATT-------CTATG--------C---A-----TG---AAT-----GA--CCC--AG-CA----CAA-------AGCTATTGAAGACTG-TG---TGATACGGTCGAATTATTCTGT-AAGTAAA--ATGTTTTGTTCTG--AGT---AATGGA-A---TATAGTTCATCTAAcatcatatatttttgt
gi|11 : tTGTCAC------GT--GATCGTC------------GTACGT--------T-------ATGTGACACTATAC---A-----CC---ACT-----GA--CTC--AA-CA----CAA-------AGCTGATGTAGACTT-TG---CGTTAAAGTTGGACTATACTGTTAAGTCAA--AAGTTTTGTTCTG--AGT--AAA-TGA-A---TAT-CTTTATCAAAGACGAAACTAAATcaaggagagcattgtacacttgaggtaactccagtccctcatcccggttgaatgacggccgtcgtaatcgaatatagttcatctaagatgttaaatccagaagaagagaacaacctatattgttgt
gi|8 : cTGTCAC------GT--GATCATC------------CTAAGTCATGTGATT-------CTATG--------C---A-----TA---TCT-----GA--CCC--AG-TA----CAG-------AGCTGATGAAGACTG-TG---T--------CGAAATATATTG-----TCAA--ATGTTTTGTTCTG--AGT--AAcaag
gi|10 : acaaactataggttgttctcttccattacttta-------TTATG--------T---A-----TA---AAT-----GA--CCC--AG-CA----CAA-------AGCTGATGAAGACTG-TT---TGATACGGTCGAAATATACTGT-AAGTGAA--ATGTTTTATTCTG--AGT---AATGGA-A---TATAATTCATCTAAG-TT---TCAAATCCAGAACAAGAGAA-CAACcaaggagagcattctatacaagagttaacttaaatccttcatcct
gi|5 : aacaatataaTATG--------C---A-----TG---AAT-----GA--TTC--CT-CA----CAA-------AGCTGATGAAGACTG-T----T-ATACAGTTAAAATATACTCT-AAGTCAA--ATGTTTTATTCTG--AGT--AA--TGA-AA--TATAATTCATCTAAGATG---TTAAATCCAGAACAAGAGAA-CAACCtataggtaccatctgtgatattttgggaatat
gi|12 : catacaatgtgaggatttaatttgtttaattcgaatttacatgccataataactgatacaacaatataTATG--------C---A-----TG---GAT-----GA--CTC--AG-CA----CAA-------AGCTGATGAAGATTA-TG---TGATACGGTCAAAATATGCTGT-AAGTCAAT-ATATTTTGTTCTG--AGT--A-------------------ATCTAAGATG---TTAATTTCAGAGCAAGAGAA-CAACCTAAATgtatcacgtggcataggaagataagt
gi|1 : aacG---AAT-----GA--CAA--AG-CA----CAA-------AGCTGATGAAGACTG-TG---TGATACGGTCGAAATATTCTCT-AGGTCGA--CCGTTTTGTTCTG--GG---AAATGGA-A---TATAGTTCTTCTAAGgtatcacgtgacataggaagat
gi|14 : T-----GA--CCT--GG-CA----CTA-------GGCTGATGAAGACTG-TG-----ATACAGTCAAAATATACTGT-AAGTAAA--AAGTTTTGTTCTG--AGT--AAG-TGA-A---TACA-TTCATCTATGAactcacagcatcacgtgacataggacgagagcattgtacactggaggtatagcaagtccctcgtcccggctgagtgacggccgttgttgttttatcgttaccacctctttgacacgtcgcttaatacggatgtcttcggatgttagtatcatggtgtattcaggtttggtgtgatgtccagtattgtcacaatgttcatgaatagccgagttcggtctaaccgcgtgttctttcattctaatgtcaagggatcatccaagttcaccaacataatctctatcacgttaatggaatatatttaatctaatatgttaaactcggaacaagagaacaacctatattgttgcattacacctgttatctcattgaagtcctttactgattccggcagcatttgcttgtgtttt
gi|17 : att-----GA--CCC--AG-CA----CAA-------AGCTGATGAAgtgatgcgtggtggtacgcgacatgggat
gi|2 : ttacaaataagtgtcttagattaattatattccattactcagaacaaaacatttggtcCGAAATATACTGA-AAGTCAA--ATGTTTTGTTCTG--AGT---AATGGA-A---TTTAATTAATCTAAGATG---TTAACTGGAGAACTAGAGAA-CAATCtctca
gi|7 : tgaaggggattttggtatacgctcataatacacattagttttaacttgattaatgtaatcttaagcaataaataaatacattgtgcatcaaagtaattcataatatttgtgaaatatgttaagtagttttttaattgcgttatatggaccccagtggaataaagtcctcggactttacttggctttccaagcatttcatgtcactttaagatcactgttatttcatttttcaacttatgaactgttaataataagttttcaagtaaaataagacattcaatttgtaagtatttatactgtgataaggtactgaaattgtgtgatacatttatgacattctatgatgttcatagaaaataatagatcaataatttaacaataaaATATTTCGA-TGGTCGA--ATGTTTTGTTCTG--AGT---AATGGA-A---TATAAATCATCTAAGAT
gi|15 : agttagatatttagttttattctgctcccatcatggcatgtcatacagcatatatatatacaaatttacaaaagtaatgataaaaagctaataacattaaaatgatttgttttatctaaaatagttattg-AAGTCAT--ATGTTTTGTTCTG--A-T-----TTAT-G---AAAAAT--ATTCAAGATG---TCAAATACAAAACAAGAGAACAAACC
gi|20 : ttttaaatgaatacaaataatttcaaaaataca-AAGCCAA--ATGTTTTGATCTG--AGT---CATTGA-A---TAAAGTTCATCTAAGA
gi|17 : tataatcagcatgtcctCAA--ATGTTTTGTTCTG--AGT---AATGGA-A---TATAATTAATCTAAGA
gi|1 : ttacaaataagtgGT--TAATGGA-A---TATATTTAATCTAATATG---TTAAACTCGGAACAAGAGAA-CAACCgtcttcatcagctttgtgctgggtctctca
gi|3 : cttagaagaactatattccatttcccagaacaaaacggtcgacctagagaatatttcgaccgtatcacacagtcttcatcagctttgtgctttgtcattcactcacagcatcacgtgacataggacgagagcattgtacactggaggtatagcaagtccctcgtcccggctgagtgacggccgttgttgttttatcgttaccacctctttgacacgtcgcttaatacggatgtcttcggatgttagtatcatggtgtattcaggtttggtgtgatgtccagtattgtcacaatgttcatgaatagccgagttcggtctaaccgcgtgttctttcattctaatgtcaagggatcatccaagttcaccaacataatctctatcacAATCGA-A---TATAGTTCATCTAAGATG---TTAAATCCAGAAGAAGAGAA-CAACCtatattgttgcattacacctgttatctcattgaagtcctttactgattccggcagcatttgcttgtgtttt
gi|22 : tttagatgaactatattccattactcagaacaaaacattttacttacagaataattcgaccgtatcacacagtcttcaatagctttgtgctgggtcattcatgcatagaatcatgtgacataggaagatcacgtgatacaaggagagcattgtacacttgaggtaactccagtccctcatcccggttgaatgacggccgtcgtAGATG---TTAAATCCAGAACAAGAGAA-CAACCtatattgttgt
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|18 ): AGTCCCTCATCACAGACGAGTGTCGGCCATTATTGTTTTATAGCTATCGCCTCTTTGACACCTCTTTTAG
Unaligned ( gi|19 ): TCATTGAATTTGTATAAAATATTTCTATGGGGGCCTTTATTAGATACCAAAAATAGTTGTTGTTTTT
Unaligned ( gi|21 ): CAGTATTCAACAGCAACGTGCTTGGTAAGTGGCGTAAAGTGTCACATGACGTAGGATGATC
Alignments
lowQualScore : 1111 333333333333333333333 11111111 111111111 2222222222222222 1
lowQualScore : 1 6 2222 222222222222222222222 77777777 5555 1 9999999 33 2 2 2 555 6666 2 777777777 777 777777 1 666666 2 0 5555 1111111111111111 4 555 3 1
lowQualScore : . . .... ..................... ........ .... . ....... .. . . . ... .... . ......... ... ...... . ...... . . .... ................ . ... . .
lowQualScore : 0 8 1111 555555555555555555555 77777777 6666 1 3333333 99 9 9 9 000 1111 9 111111111 999 777777 0 111111 4 8 3333 7777777777777777 2 888 6 8
consensus : TAGATGAACTATATTCCATTACTCAGAACAAAACATTCGACTTACAGAATATTTCGGCCGTATCACGCGGTCTTC----GTCA----GCT-------T------TGTG--------CATG---AAT-------GAC--CCA-G-CACA-AAGC---TGAT----G-AAGACTGT------GTGATAC--GGTCGAAA------TATACT----G-TAAGTCAA-ATGTTTTGTTC----TGAGTAA-----------ATGGAATATAGTTCATCTAAGATG---TTAAATCCAGAACAAGAGAAC-AACCTATATT
Reference ( family-277 ) : TAGATGAATTATATTCCATTACTCAGAACAAAACATTTGACTTACAGNATATTTCGACCGTATCACGCAGTCTTC----ATCA----GCT-------T------TGTG--------CATG---AAT-------GAC--CCA-G-CACA-AAGC---TGAT----G-AAGACTGT------GTGATAC--GGTCGAAA------TATNCT----G-TAAGTCAA-ATGTTTTGTTC----TGAGTAA-----------ATNGAATATAATTCATCTAAGATG---TTAAATCCAGAACAAGAGAAC-AACCTAAATT
gi|1 : ------TGTG--------AGTG---AAT-------GAC--AAA-G-CACA-AAGC---TGAT----G-AAGACTGT------GTGATAC--GGTCGAAA------TATTCT----C-TAGGTCGA-CCGTTTTGTTC----TGGG-AA-----------ATGGAATATAGTTCTTCTAAG
gi|1 : GTTA-----------ATGGAATATATTTAATCTAATATG---TTAAACTCGGAACAAGAGAAC-AACCTATATTgcatcacgtgacataggacgagagcattgtacactggaggtatagcaagtccctcgtcccggctgagtgacggccgttgttgttttatcgttaccacctctttgacacgtcgcttaatacggatgtcttcggatgttagtatcatggtgtattcaggtttggtgtgatgtccagtattgtcacaatgttcatgaatagccgagttcggtctaaccgcgtgttctttcattctaatgtcaagggatcatccaagttcaccaacataatctctatcacgttaatggaatatatttaatctaatatgttaaactcggaacaagagaacaacctatattgttgcattacacctgttatctcattgaagtcctttactgattccggcagcatttgcttgtgtttt
gi|10 : cttagaagaactatattccatttcccagaacaaaacggtcgacctagagaatatttcgaccgtatcacacagtcttcatcagctttgtgctttgtcattcactcacagcatcacgtgacataggacgagagcattgtacactggaggtatagcaagtccctcgtcccggctgagtgacggccgttgttgttttatcgttaccacctctttgacacgtcgcttaatacggatgtcttcggatgttagtatcatggtgtattcaggtttggtgtgatgtccagtattgtcacaatgttcatgaatagccgagttcggtctaaccgcgtgttctttcattctaatgtcaagggatcatccaagttcaccaacataatctctatcac-------T------TATG--------TATA---AAT-------GAC--CCA-G-CACA-AAGC---TGAT----G-AAGACTGT------TTGATAC--GGTCGAAA------TATACT----G-TAAGTGAA-ATGTTTTATTC----TGAGT-A-----------ATGGAATATAATTCATCTAAG-TT---TCAAATCCAGAACAAGAGAAC-AACTTATATTgttgcattacacctgttatctcattgaagtcctttactgattccggcagcatttgcttgtgtttt
gi|11 : aacGTGTCACGTGATCGTC----GTAC----GTT-------A------TGTGACACTATACACC---ACT-------GAC--TCA-A-CACA-AAGC---TGAT----G-TAGACTTT------GCGTTAA--AGTTGGAC------TATACT----GTTAAGTCAA-AAGTTTTGTTC----TGAGTAA-----------AT-GAATAT-CTTTATCAAAGACGAAACTAAATtataggtaccatctgtgatattttgggaatat
gi|12 : c------TATG--------CATG---GAT-------GAC--TCA-G-CACA-AAGC---TGAT----G-AAGATTAT------GTGATAC--GGTCAAAA------TATGCT----G-TAAGTCAATATATTTTGTTC----TGAGTA--------------------------ATCTAAGATG---TTAATTTCAGAGCAAGAGAAC-AACCTAAATTaag
gi|13 : aacAGTCTATTTTG----TATCACGTGGTCTTCCTATATCA-----CA-------TGATAAATATG--------CATA---AAT-------GAC--CCA-G-CACA-GCGC---TGAT----G-AATACTGT------GTGATAC--GGTCGAAA------TATTCT----G-TAAGTCAA-ATGTTTTGTTC----TGAATAA-----------A-GGAATAgtatcacgtgacataggaagat
gi|14 : G--------CATC---ACT-------GAC--CTG-G-CACT-AGGC---TGAT----G-AAGACTGT------G--ATAC--AGTCAAAA------TATACT----G-TAAGTAAA-AAGTTTTGTTC----TGAGTAA-----------GT-GAATAC-ATTCATCTATGAtcagaattaatatat
gi|15 : attAAGTCAT-ATGTTTTGTTC----TGATTTA------------TGAAAAATA-TTCA----AGATG---TCAAATACAAAACAAGAGAACAAACCTGTATTgtggtggtacgcgacatgggat
gi|16 : ttttaaatgaatacaaataatttcaaaCTTC----GTCATGTGACG-------C------TGTG--------CATC---ACT-------GAT--CAA-G-CACC-TAAC---TGAT----G-AAGACTGTGATAAAGTGATAA--AGTCGAAA------TATA------A-TAAATCAA-AAGTTTTAT
gi|17 : TG---AGA-------GAC--CCA-G-CACA-AAGC---TGAT----G-AAGACC----------------------AAA------TGTTTT----G------------------TTC----TGAGT-A-----------ATGGAATATAATTAATCTAAGAgatg
gi|2 : ttacaaataagtgCGAAA------TATACT----G-AAAGTCAA-ATGTTTTGTTC----TGAGT-A-----------ATGGAATTTAATTAATCTAAGATG---TTAACTGGAGAACTAGAGAAC-AATCT
gi|20 : tgaaggggattttggtatacgctcataatacacattagttttaacttgattaatgtaatcttaagcaataaataaatacattgtgcatcaaagtaattcataatatttgtgaaatatgttaagtagttttttaattgcgttatatggaccccagtggaataaagtcctcggactttacttggctttccaagcatttcatgtcactttaagatcactgttatttcatttttcaacttatgaactgttaataataagttttcaagtaaaataagacattcaatttgtaagtatttatactgtgataaggtactgaaattgtgtgatacatttatgacattctatgatgttcatagaaaataatagatcaataatttaacaataaAAGCCAA-ATGTTTTGATC----TGAGT-C-----------ATTGAATAAAGTTCATCTAAGA
gi|22 : tataatcagcatgtcctAGATG---TTAAATCCAGAACAAGAGAAC-AACCTATATT
gi|3 : tcaacTAGATGAACTATATTCCATTACTCAGAACAAAACATTTTACTTACAGAATAATTCGACCGTATCACACAGTCTTC----AATA----GCT-------T------TGTG--------C-TG---GGT-------CAT--TCATG-CATAGAATCATGTGACATAGG-AAGATCAC------GTGATACA-AG--GAGAGCATTGTACACTTGAGG-TAACTCCA-GTCCCTCATCCCGGTTGAATGACGGCCGTCGTAATCGAATATAGTTCATCTAAGATG---TTAAATCCAGAAGAAGAGAAC-AACCTATATTa
gi|4 : ttAATTATATTACATTACTCAGAACAAAATATTTGATTTACAGAATATTTCGGCTGTATCACACAGTCTTC----ATCA----GCTGGGGTCAT------TGTT--------CATGCCTAGTATCGTTTGAC--ATA-GGCACA-AAGA---TGAT----G-AAGACTG----------ATTT--GGTATAAA------TATTCC----G-TAAATCAA-ATGTTTTGTTC----TGCATAA------------TGGAATAAAGATCATCTAAGATA---TTAAATCCAGAACAAGAGAAC-AATGTATATTgttgt
gi|5 : aac------TATG--------CATG---AAT-------GAT--TCC-T-CACA-AAGC---TGAT----G-AAGACTGT-------T-ATAC--AGTTAAAA------TATACT----C-TAAGTCAA-ATGTTTTATTC----TGAGTAA------------TGAAATATAATTCATCTAAGATG---TTAAATCCAGAACAAGAGAAC-AACCTATATTaaaactcaatgaagtt
gi|6 : catacaatgtgaggatttaatttgtttaattcgaatttacatgccataataactgatacaacTAGATGAACTATATTCCATTACTCAGAATAAAACATTCGACTTGCATAATATTTCGGCCATATCACGCAGTCTTC----ATAA----GTT-------T------TGTG--------CAAG---AAT-------GAC--ACA-G-CACA-AAGC---TGAT----G-GATACTGT------GTGATGC--CGTCAAAA------TATTCT----G-CAAGTCAA-ATGTTTTGTTC----TGAGTAA-----------ATTGTATATAGTTCATCTAAGATG---TTAAATCCAGAACAAGAGAAA-AACCGAAACTgtatcacgtggcataggaagataagt
gi|7 : TAGATGATTTATATTCCATTACTCAGAACAAAACATTCGAC
gi|8 : agttagatatttagttttattctgctcccatcatggcatgtcatacagcatatatatatacaaatttacaaaagtaatgataaaaagctaataacattaaaatgatttgttttatctaaaatagttattgatctT-------C------TATG--------CATA---TCT-------GAC--CCA-G-TACA-GAGC---TGAT----G-AAGACTGT----------------GTCGAAA------TATATT---------GTCAA-ATGTTTTGTTC----TGAGTAA-----------catcgaaatat
gi|9 : acaaactataggttgttctcttccattactttaAGTGTATTTCGACCATATCACACAGTCTTC----ATCA----ATT-------TC-----TGCGGGGT----CATT---GAT-------GATTACTA-T-CAC-----T---TGAC----ATAAAAATATCAC---GTGAAACAAGAATGAAT------TATACT----G-TAAGTCAA-A------ATCA----T-----A-----------AT---ATATAATTCATCTAAGATG---TTAAATACAGAACAACAGAAC-ATCATATATTatcacatgacttaggatgatcacgtgacacaaggagagcattctatacaagagttaacttaaatccttcatcct
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AGTCCCTCATCACAGACGAGTGTCGGCCATTATTGTTTTATAGCTATCGCCTCTTTGACACCTCTTTTAG
Unaligned ( gi|19 ): TCATTGAATTTGTATAAAATATTTCTATGGGGGCCTTTATTAGATACCAAAAATAGTTGTTGTTTTT
Unaligned ( gi|21 ): CAGTATTCAACAGCAACGTGCTTGGTAAGTGGCGTAAAGTGTCACATGACGTAGGATGATC
Alignments
lowQualScore : 55555555555555555555555555555 11111111 1111111 222222222222222222222222222
lowQualScore : 1 77 00000000000000000000000000000 77777777 5555 1 9999999 33 2 2 2 555 6666 2 5555555 77 888888 777777 2 666666666666666666666666666 7 555 3
lowQualScore : . .. ............................. ........ .... . ....... .. . . . ... .... . ....... .. ...... ...... . ........................... . ... .
lowQualScore : 4 99 00000000000000000000000000000 77777777 6666 1 3333333 99 9 9 9 000 1111 9 8888888 33 222222 222222 4 000000000000000000000000000 0 888 6
consensus : TAGATGAACTATATTCCATTACTCAGAACAAAACATTCGACTTACAGAATATTTCGGCC--GTATCACGCGGTCTTC----GTCA----GCT-------T------TGTG--------CATG---AAT-------GAC--CCA-G-CACA-AAGC---TGAT----G-AAGACTGT------GTGATAC--GGTCGAAA------TATACT----G-TAAGTCAA-ATGTTTTGTTCTGAGTA-------AATG---------------GAATATAGTTCATCTAAGATG---TTAAATCCAGAACAAGAGAAC-AACCTATATT
Reference ( family-277 ) : TAGATGAACTATATTCCATTACTCAGAACAAAACATTCGACTTACAGAATATTTCGGCC--GTATCACGCGGTCTTC----GTCA----GCT-------T------TGTG--------CATG---AAT-------GAC--CCA-G-CACA-AAGC---TGAT----G-AAGACTGT------GTGATAC--GGTCGAAA------TATACT----G-TAAGTCAA-ATGTTTTGTTCTGAGTA-------AATG---------------GAATATAGTTCATCTAAGATG---TTAAATCCAGAACAAGAGAAC-AACCTATATT
gi|1 : ------TGTG--------AGTG---AAT-------GAC--AAA-G-CACA-AAGC---TGAT----G-AAGACTGT------GTGATAC--GGTCGAAA------TATTCT----C-TAGGTCGA-CCGTTTTGTTCTGGG-A-------AATG---------------GAATATAGTTCTTCTAAG
gi|1 : GTT-------AATG---------------GAATATATTTAATCTAATATG---TTAAACTCGGAACAAGAGAAC-AACCTATATTgcatcacgtgacataggacgagagcattgtacactggaggtatagcaagtccctcgtcccggctgagtgacggccgttgttgttttatcgttaccacctctttgacacgtcgcttaatacggatgtcttcggatgttagtatcatggtgtattcaggtttggtgtgatgtccagtattgtcacaatgttcatgaatagccgagttcggtctaaccgcgtgttctttcattctaatgtcaagggatcatccaagttcaccaacataatctctatcacgttaatggaatatatttaatctaatatgttaaactcggaacaagagaacaacctatattgttgcattacacctgttatctcattgaagtcctttactgattccggcagcatttgcttgtgtttt
gi|10 : cttagaagaactatattccatttcccagaacaaaacggtcgacctagagaatatttcgaccgtatcacacagtcttcatcagctttgtgctttgtcattcactcacagcatcacgtgacataggacgagagcattgtacactggaggtatagcaagtccctcgtcccggctgagtgacggccgttgttgttttatcgttaccacctctttgacacgtcgcttaatacggatgtcttcggatgttagtatcatggtgtattcaggtttggtgtgatgtccagtattgtcacaatgttcatgaatagccgagttcggtctaaccgcgtgttctttcattctaatgtcaagggatcatccaagttcaccaacataatctctatcac-------T------TATG--------TATA---AAT-------GAC--CCA-G-CACA-AAGC---TGAT----G-AAGACTGT------TTGATAC--GGTCGAAA------TATACT----G-TAAGTGAA-ATGTTTTATTCTGAGT--------AATG---------------GAATATAATTCATCTAAG-TT---TCAAATCCAGAACAAGAGAAC-AACTTATATTgttgcattacacctgttatctcattgaagtcctttactgattccggcagcatttgcttgtgtttt
gi|11 : aac--GTGTCACGTGATCGTC----GTAC----GTT-------A------TGTGACACTATACACC---ACT-------GAC--TCA-A-CACA-AAGC---TGAT----G-TAGACTTT------GCGTTAA--AGTTGGAC------TATACT----GTTAAGTCAA-AAGTTTTGTTCTGAGTA-------AAT----------------GAATAT-CTTTATCAAAGACGAAACTAAATtataggtaccatctgtgatattttgggaatat
gi|12 : c------TATG--------CATG---GAT-------GAC--TCA-G-CACA-AAGC---TGAT----G-AAGATTAT------GTGATAC--GGTCAAAA------TATGCT----G-TAAGTCAATATATTTTGTTCTGAGTA-------------------------------------ATCTAAGATG---TTAATTTCAGAGCAAGAGAAC-AACCTAAATTaag
gi|13 : aac--GTATCACGTGGTCTTCCTATATCA-----CA-------TGATAAATATG--------CATA---AAT-------GAC--CCA-G-CACA-GCGC---TGAT----G-AATACTGT------GTGATAC--GGTCGAAA------TATTCT----G-TAAGTCAA-ATGTTTTGTTCTGAATA-------AA-G---------------GAATAgtatcacgtgacataggaagat
gi|14 : G--------CATC---ACT-------GAC--CTG-G-CACT-AGGC---TGAT----G-AAGACTGT------G--ATAC--AGTCAAAA------TATACT----G-TAAGTAAA-AAGTTTTGTTCTGAGTA-------AGT----------------GAATACA-TTCATCTATGAaaaatagacttcagaattaatatat
gi|15 : attAAGTCAT-ATGTTTTGTTCTGATTT-------A-TG---------------AAAAATA-TTCA----AGATG---TCAAATACAAAACAAGAGAACAAACCTGTATTgtggtggtacgcgacatgggat
gi|16 : ttttaaatgaatacaaataatttcaaaCTTC----GTCATGTGACG-------C------TGTG--------CATC---ACT-------GAT--CAA-G-CACC-TAAC---TGAT----G-AAGACTGTGATAAAGTGATAA--AGTCGAAA------TATA------A-TAAATCAA-AAGTTTTAT
gi|17 : CAA-ATGTTTTGTTCTGAGT--------AATG---------------GAATATAATTAATCTAAGAgatg
gi|17 : ttacaaataagtgTG---AGA-------GAC--CCA-G-CACA-AAGC---TGAT----G-AAGACgtcttcatcagctttgtgctgggtctctca
gi|2 : ttacaaataagtgtcttagattaattatattccattactcagaacaaaacatttgCGAAA------TATACT----G-AAAGTCAA-ATGTTTTGTTCTGAGT--------AATG---------------GAATTTAATTAATCTAAGATG---TTAACTGGAGAACTAGAGAAC-AATCTTTATT
gi|20 : tgaaggggattttggtatacgctcataatacacattagttttaacttgattaatgtaatcttaagcaataaataaatacattgtgcatcaaagtaattcataatatttgtgaaatatgttaagtagttttttaattgcgttatatggaccccagtggaataaagtcctcggactttacttggctttccaagcatttcatgtcactttaagatcactgttatttcatttttcaacttatgaactgttaataataagttttcaagtaaaataagacattcaatttgtaagtatttatactgtgataaggtactgaaattgtgtgatacatttatgacattctatgatgttcatagaaaataatagatcaataatttaacAAGCCAA-ATGTTTTGATCTGAGT--------CATT---------------GAATAAAGTTCATCTAAGA
gi|22 : tataatcagcatgtcctAGATG---TTAAATCCAGAACAAGAGAAC-AACCTATATT
gi|3 : tcaacTAGATGAACTATATTCCATTACTCAGAACAAAACATTTTACTTACAGAATAATTCGACC--GTATCACACAGTCTTC----AATA----GCT-------T------TGTG--------C-TG---GGT-------CAT--TCATG-CATAGAATCATGTGACATAGG-AAGATCAC------GTGATACA-AG--GAGAGCATTGTACACTTGAGG-TAACTCCA-GTCCCTCATCCCGGTTG-------AATGACGGCCGTCGTAATCGAATATAGTTCATCTAAGATG---TTAAATCCAGAAGAAGAGAAC-AACCTATATTa
gi|4 : ttAATTATATTACATTACTCAGAACAAAATATTTGATTTACAGAATATTTCGGCT--GTATCACACAGTCTTC----ATCA----GCTGGGGTCAT------TGTT--------CATGCCTAGTATCGTTTGAC--ATA-GGCACA-AAGA---TGAT----G-AAGACTG----------ATTT--GGTATAAA------TATTCC----G-TAAATCAA-ATGTTTTGTTCTGCATA-------A-TG---------------GAATAAAGATCATCTAAGATA---TTAAATCCAGAACAAGAGAAC-AATGTATATTgttgt
gi|5 : aac------TATG--------CATG---AAT-------GAT--TCC-T-CACA-AAGC---TGAT----G-AAGACTGT-------T-ATAC--AGTTAAAA------TATACT----C-TAAGTCAA-ATGTTTTATTCTGAGTA-------A-TG---------------AAATATAATTCATCTAAGATG---TTAAATCCAGAACAAGAGAAC-AACCTATATTaaaactcaatgaagtt
gi|6 : catacaatgtgaggatttaatttgtttaattcgaatttacatgccataataactgatacaacTAGATGAACTATATTCCATTACTCAGAATAAAACATTCGACTTGCATAATATTTCGGCC--ATATCACGCAGTCTTC----ATAA----GTT-------T------TGTG--------CAAG---AAT-------GAC--ACA-G-CACA-AAGC---TGAT----G-GATACTGT------GTGATGC--CGTCAAAA------TATTCT----G-CAAGTCAA-ATGTTTTGTTCTGAGTA-------AATT---------------GTATATAGTTCATCTAAGATG---TTAAATCCAGAACAAGAGAAA-AACCgtatcacgtggcataggaagataagt
gi|7 : TAGATGATTTATATTCCATTACTCAGAACAAAACATTCGACCATCGAAATATgaaact
gi|8 : agttagatatttagttttattctgctcccatcatggcatgtcatacagcatatatatatacaaatttacaaaagtaatgataaaaagctaataacattaaaatgatttgttttatctaaaatagttattgatctTATAGAATGCTCT--CCTTGTGTCACGTGATCATCCTAAGTCATGT-GAT-------TC-----TATG--------CATA---TCT-------GAC--CCA-G-TACA-GAGC---TGAT----G-AAGACTGT----------------GTCGAAA------TATATT---------GTCAA-ATGTTTTGTTCTGAGTAATAAAGTAATG---------------GAA
gi|9 : acaaactataggttgttctcTATTTCGACC--ATATCACACAGTCTTC----ATCA----ATT-------TC-----TGCGGGGT----CATT---GAT-------GATTACTA-T-CAC-----T---TGAC----ATAAAAATATCAC---GTGAAACAAGAATGAAT------TATACT----G-TAAGTCAA-A------ATCAT------------AAT------------------ATATAATTCATCTAAGATG---TTAAATACAGAACAACAGAAC-ATCATATATTcaagagttaacttaaatccttcatcct
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AGTCCCTCATCACAGACGAGTGTCGGCCATTATTGTTTTATAGCTATCGCCTCTTTGACACCTCTTTTAG
Unaligned ( gi|19 ): TCATTGAATTTGTATAAAATATTTCTATGGGGGCCTTTATTAGATACCAAAAATAGTTGTTGTTTTT
Unaligned ( gi|21 ): CAGTATTCAACAGCAACGTGCTTGGTAAGTGGCGTAAAGTGTCACATGACGTAGGATGATC
Alignments
lowQualScore : 55555555555555555555555555555 11111111 1111111 222222222222222222222222222
lowQualScore : 1 77 00000000000000000000000000000 77777777 5555 1 9999999 33 2 2 2 555 6666 2 5555555 77 888888 777777 2 666666666666666666666666666 7 555 3
lowQualScore : . .. ............................. ........ .... . ....... .. . . . ... .... . ....... .. ...... ...... . ........................... . ... .
lowQualScore : 4 99 00000000000000000000000000000 77777777 6666 1 3333333 99 9 9 9 000 1111 9 8888888 33 222222 222222 4 000000000000000000000000000 0 888 6
consensus : TAGATGAACTATATTCCATTACTCAGAACAAAACATTCGACTTACAGAATATTTCGGCC--GTATCACGCGGTCTTC----GTCA----GCT-------T------TGTG--------CATG---AAT-------GAC--CCA-G-CACA-AAGC---TGAT----G-AAGACTGT------GTGATAC--GGTCGAAA------TATACT----G-TAAGTCAA-ATGTTTTGTTCTGAGTA-------AATG---------------GAATATAGTTCATCTAAGATG---TTAAATCCAGAACAAGAGAAC-AACCTATATT
Reference ( family-277 ) : TAGATGAACTATATTCCATTACTCAGAACAAAACATTCGACTTACAGAATATTTCGGCC--GTATCACGCGGTCTTC----GTCA----GCT-------T------TGTG--------CATG---AAT-------GAC--CCA-G-CACA-AAGC---TGAT----G-AAGACTGT------GTGATAC--GGTCGAAA------TATACT----G-TAAGTCAA-ATGTTTTGTTCTGAGTA-------AATG---------------GAATATAGTTCATCTAAGATG---TTAAATCCAGAACAAGAGAAC-AACCTATATT
gi|1 : ------TGTG--------AGTG---AAT-------GAC--AAA-G-CACA-AAGC---TGAT----G-AAGACTGT------GTGATAC--GGTCGAAA------TATTCT----C-TAGGTCGA-CCGTTTTGTTCTGGG-A-------AATG---------------GAATATAGTTCTTCTAAG
gi|1 : GTT-------AATG---------------GAATATATTTAATCTAATATG---TTAAACTCGGAACAAGAGAAC-AACCTATATTgcatcacgtgacataggacgagagcattgtacactggaggtatagcaagtccctcgtcccggctgagtgacggccgttgttgttttatcgttaccacctctttgacacgtcgcttaatacggatgtcttcggatgttagtatcatggtgtattcaggtttggtgtgatgtccagtattgtcacaatgttcatgaatagccgagttcggtctaaccgcgtgttctttcattctaatgtcaagggatcatccaagttcaccaacataatctctatcacgttaatggaatatatttaatctaatatgttaaactcggaacaagagaacaacctatattgttgcattacacctgttatctcattgaagtcctttactgattccggcagcatttgcttgtgtttt
gi|10 : cttagaagaactatattccatttcccagaacaaaacggtcgacctagagaatatttcgaccgtatcacacagtcttcatcagctttgtgctttgtcattcactcacagcatcacgtgacataggacgagagcattgtacactggaggtatagcaagtccctcgtcccggctgagtgacggccgttgttgttttatcgttaccacctctttgacacgtcgcttaatacggatgtcttcggatgttagtatcatggtgtattcaggtttggtgtgatgtccagtattgtcacaatgttcatgaatagccgagttcggtctaaccgcgtgttctttcattctaatgtcaagggatcatccaagttcaccaacataatctctatcac-------T------TATG--------TATA---AAT-------GAC--CCA-G-CACA-AAGC---TGAT----G-AAGACTGT------TTGATAC--GGTCGAAA------TATACT----G-TAAGTGAA-ATGTTTTATTCTGAGT--------AATG---------------GAATATAATTCATCTAAG-TT---TCAAATCCAGAACAAGAGAAC-AACTTATATTgttgcattacacctgttatctcattgaagtcctttactgattccggcagcatttgcttgtgtttt
gi|11 : aac--GTGTCACGTGATCGTC----GTAC----GTT-------A------TGTGACACTATACACC---ACT-------GAC--TCA-A-CACA-AAGC---TGAT----G-TAGACTTT------GCGTTAA--AGTTGGAC------TATACT----GTTAAGTCAA-AAGTTTTGTTCTGAGTA-------AAT----------------GAATAT-CTTTATCAAAGACGAAACTAAATtataggtaccatctgtgatattttgggaatat
gi|12 : c------TATG--------CATG---GAT-------GAC--TCA-G-CACA-AAGC---TGAT----G-AAGATTAT------GTGATAC--GGTCAAAA------TATGCT----G-TAAGTCAATATATTTTGTTCTGAGTA-------------------------------------ATCTAAGATG---TTAATTTCAGAGCAAGAGAAC-AACCTAAATTaag
gi|13 : aac--GTATCACGTGGTCTTCCTATATCA-----CA-------TGATAAATATG--------CATA---AAT-------GAC--CCA-G-CACA-GCGC---TGAT----G-AATACTGT------GTGATAC--GGTCGAAA------TATTCT----G-TAAGTCAA-ATGTTTTGTTCTGAATA-------AA-G---------------GAATAgtatcacgtgacataggaagat
gi|14 : G--------CATC---ACT-------GAC--CTG-G-CACT-AGGC---TGAT----G-AAGACTGT------G--ATAC--AGTCAAAA------TATACT----G-TAAGTAAA-AAGTTTTGTTCTGAGTA-------AGT----------------GAATACA-TTCATCTATGAaaaatagacttcagaattaatatat
gi|15 : attAAGTCAT-ATGTTTTGTTCTGATTT-------A-TG---------------AAAAATA-TTCA----AGATG---TCAAATACAAAACAAGAGAACAAACCTGTATTgtggtggtacgcgacatgggat
gi|16 : ttttaaatgaatacaaataatttcaaaCTTC----GTCATGTGACG-------C------TGTG--------CATC---ACT-------GAT--CAA-G-CACC-TAAC---TGAT----G-AAGACTGTGATAAAGTGATAA--AGTCGAAA------TATA------A-TAAATCAA-AAGTTTTAT
gi|17 : CAA-ATGTTTTGTTCTGAGT--------AATG---------------GAATATAATTAATCTAAGAgatg
gi|17 : ttacaaataagtgTG---AGA-------GAC--CCA-G-CACA-AAGC---TGAT----G-AAGACgtcttcatcagctttgtgctgggtctctca
gi|2 : ttacaaataagtgtcttagattaattatattccattactcagaacaaaacatttgCGAAA------TATACT----G-AAAGTCAA-ATGTTTTGTTCTGAGT--------AATG---------------GAATTTAATTAATCTAAGATG---TTAACTGGAGAACTAGAGAAC-AATCTTTATT
gi|20 : tgaaggggattttggtatacgctcataatacacattagttttaacttgattaatgtaatcttaagcaataaataaatacattgtgcatcaaagtaattcataatatttgtgaaatatgttaagtagttttttaattgcgttatatggaccccagtggaataaagtcctcggactttacttggctttccaagcatttcatgtcactttaagatcactgttatttcatttttcaacttatgaactgttaataataagttttcaagtaaaataagacattcaatttgtaagtatttatactgtgataaggtactgaaattgtgtgatacatttatgacattctatgatgttcatagaaaataatagatcaataatttaacAAGCCAA-ATGTTTTGATCTGAGT--------CATT---------------GAATAAAGTTCATCTAAGA
gi|22 : tataatcagcatgtcctAGATG---TTAAATCCAGAACAAGAGAAC-AACCTATATT
gi|3 : tcaacTAGATGAACTATATTCCATTACTCAGAACAAAACATTTTACTTACAGAATAATTCGACC--GTATCACACAGTCTTC----AATA----GCT-------T------TGTG--------C-TG---GGT-------CAT--TCATG-CATAGAATCATGTGACATAGG-AAGATCAC------GTGATACA-AG--GAGAGCATTGTACACTTGAGG-TAACTCCA-GTCCCTCATCCCGGTTG-------AATGACGGCCGTCGTAATCGAATATAGTTCATCTAAGATG---TTAAATCCAGAAGAAGAGAAC-AACCTATATTa
gi|4 : ttAATTATATTACATTACTCAGAACAAAATATTTGATTTACAGAATATTTCGGCT--GTATCACACAGTCTTC----ATCA----GCTGGGGTCAT------TGTT--------CATGCCTAGTATCGTTTGAC--ATA-GGCACA-AAGA---TGAT----G-AAGACTG----------ATTT--GGTATAAA------TATTCC----G-TAAATCAA-ATGTTTTGTTCTGCATA-------A-TG---------------GAATAAAGATCATCTAAGATA---TTAAATCCAGAACAAGAGAAC-AATGTATATTgttgt
gi|5 : aac------TATG--------CATG---AAT-------GAT--TCC-T-CACA-AAGC---TGAT----G-AAGACTGT-------T-ATAC--AGTTAAAA------TATACT----C-TAAGTCAA-ATGTTTTATTCTGAGTA-------A-TG---------------AAATATAATTCATCTAAGATG---TTAAATCCAGAACAAGAGAAC-AACCTATATTaaaactcaatgaagtt
gi|6 : catacaatgtgaggatttaatttgtttaattcgaatttacatgccataataactgatacaacTAGATGAACTATATTCCATTACTCAGAATAAAACATTCGACTTGCATAATATTTCGGCC--ATATCACGCAGTCTTC----ATAA----GTT-------T------TGTG--------CAAG---AAT-------GAC--ACA-G-CACA-AAGC---TGAT----G-GATACTGT------GTGATGC--CGTCAAAA------TATTCT----G-CAAGTCAA-ATGTTTTGTTCTGAGTA-------AATT---------------GTATATAGTTCATCTAAGATG---TTAAATCCAGAACAAGAGAAA-AACCgtatcacgtggcataggaagataagt
gi|7 : TAGATGATTTATATTCCATTACTCAGAACAAAACATTCGACCATCGAAATATgaaact
gi|8 : agttagatatttagttttattctgctcccatcatggcatgtcatacagcatatatatatacaaatttacaaaagtaatgataaaaagctaataacattaaaatgatttgttttatctaaaatagttattgatctTATAGAATGCTCT--CCTTGTGTCACGTGATCATCCTAAGTCATGT-GAT-------TC-----TATG--------CATA---TCT-------GAC--CCA-G-TACA-GAGC---TGAT----G-AAGACTGT----------------GTCGAAA------TATATT---------GTCAA-ATGTTTTGTTCTGAGTAATAAAGTAATG---------------GAA
gi|9 : acaaactataggttgttctcTATTTCGACC--ATATCACACAGTCTTC----ATCA----ATT-------TC-----TGCGGGGT----CATT---GAT-------GATTACTA-T-CAC-----T---TGAC----ATAAAAATATCAC---GTGAAACAAGAATGAAT------TATACT----G-TAAGTCAA-A------ATCAT------------AAT------------------ATATAATTCATCTAAGATG---TTAAATACAGAACAACAGAAC-ATCATATATTcaagagttaacttaaatccttcatcct
blockSeqs : G TT CTATATCACATGATAAA ACACTATA GCCT A ATCGTTT TA T G G ATG ATAG T GATAAAG AA GCATTG TGAGG T GAATGACGGCCGTCGTAATC T AAA A
blockSeqs : G . CTAAGTCATGTGATTC GGGT A C . . . . . . . . CACG A . GT . AATAAAGTAATG A . .
blockSeqs : A . ATCAGCTGGGGTCAT . C A . . . . . . . . T . . G . TAATG C . .
blockSeqs : . . GTCATGTGACGC . G A . . . . . . . . G . . G . AAATT A . .
blockSeqs : . ATCAATTTC . A C . . . . . . . . G . . G . AATG A . .
blockSeqs : . AATAGCTT . C C . . . . . . . . G . . G . AAAT G . .
blockSeqs : ATAAGTTT . C G . . . . . . . . G . . A . AAAG G . .
blockSeqs : . G G . . . . . . . . G . . G . AAGT G . .
blockSeqs : . G G . . . . . . . . G . . G . TATG A . .
blockSeqs : . G A . . . . . . . . . . . C . AATG G . .
blockSeqs : . G A . . . . . . . . . . . G . AATG A .
blockSeqs : . A C . . . . . . . . . . . G . CATT .
blockSeqs : T A . . . . . . . . . . . AATG .
blockSeqs : . AATG .
blockSeqs : . AAT
blockSeqs : . A
blockSeqCons : AATG***********************
originalCons : TAGATGAACTATATTCCATTACTCAGAACAAAACATTCGACTTACAGAATATTTCGGCC--GTATCACGCGGTCTTC----GTCA----GCT-------T------TGTG--------CATG---AAT-------GAC--CCA-G-CACA-AAGC---TGAT----G-AAGACTGT------GTGATAC--GGTCGAAA------TATACT----G-TAAGTCAA-ATGTTTTGTTCTGAGTA-------AATG---------------GAATATAGTTCATCTAAGATG---TTAAATCCAGAACAAGAGAAC-AACCTATATT
finalCons : TAGATGAACTATATTCCATTACTCAGAACAAAACATTCGACTTACAGAATATTTCGGCC--GTATCACGCGGTCTTC----GTCA----GCT-------T------TGTG--------CATG---AAT-------GAC--CCA-G-CACA-AAGC---TGAT----G-AAGACTGT------GTGATAC--GGTCGAAA------TATACT----G-TAAGTCAA-ATGTTTTGTTCTGAGTAATG-----------------------GAATATAGTTCATCTAAGATG---TTAAATCCAGAACAAGAGAAC-AACCTATATT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AGTCCCTCATCACAGACGAGTGTCGGCCATTATTGTTTTATAGCTATCGCCTCTTTGACACCTCTTTTAG
Unaligned ( gi|19 ): TCATTGAATTTGTATAAAATATTTCTATGGGGGCCTTTATTAGATACCAAAAATAGTTGTTGTTTTT
Unaligned ( gi|21 ): CAGTATTCAACAGCAACGTGCTTGGTAAGTGGCGTAAAGTGTCACATGACGTAGGATGATC
Alignments
lowQualScore : 55555555555555555555555555555 11111111 1111111 111111111111
lowQualScore : 0 1 77 00000000000000000000000000000 77777777 5555 1 9999999 33 2 2 2 555 6666 2 5555555 77 888888 777777 2 5555 222222222222 2 2 7 555 1 3
lowQualScore : . . .. ............................. ........ .... . ....... .. . . . ... .... . ....... .. ...... ...... . .... ............ . . . ... . .
lowQualScore : 7 4 99 00000000000000000000000000000 77777777 6666 1 3333333 99 9 9 9 000 1111 9 8888888 33 222222 222222 2 0000 111111111111 2 0 4 444 0 3
consensus : TAGATGAACTATATTCCATTACTCAGAACAAAACATTCGACTTACAGAATATTTCGGCC--GTATCACGCGGTCTTC----GTCA----GCT-------T------TGTG--------CATG---AAT-------GAC--CCA-G-CACA-AAGC---TGAT----G-AAGACTGT------GTGATAC--GGTCGAAA------TATACT----G-TAAGTCAA-ATGTTTTGTTC----TGA------------GT-AATGGAATATAGTTCATCTAAGATG---TTAAATCCAGAACAAGAGAAC-AACCTATATT
Reference ( family-277 ) : TAGATGAACTATATTCCATTACTCAGAACAAAACATTCGACTTACAGAATATTTCGGCC--GTATCACGCGGTCTTC----GTCA----GCT-------T------TGTG--------CATG---AAT-------GAC--CCA-G-CACA-AAGC---TGAT----G-AAGACTGT------GTGATAC--GGTCGAAA------TATACT----G-TAAGTCAA-ATGTTTTGTTC----TGA------------GT-AATGGAATATAGTTCATCTAAGATG---TTAAATCCAGAACAAGAGAAC-AACCTATATT
gi|1 : ------TGTG--------AGTG---AAT-------GAC--AAA-G-CACA-AAGC---TGAT----G-AAGACTGT------GTGATAC--GGTCGAAA------TATTCT----C-TAGGTCGA-CCGTTTTGTTC----TGG------------GA-AATGGAATATAGTTCTTCTAAG
gi|1 : T-AATGGAATATATTTAATCTAATATG---TTAAACTCGGAACAAGAGAAC-AACCTATATTgcatcacgtgacataggacgagagcattgtacactggaggtatagcaagtccctcgtcccggctgagtgacggccgttgttgttttatcgttaccacctctttgacacgtcgcttaatacggatgtcttcggatgttagtatcatggtgtattcaggtttggtgtgatgtccagtattgtcacaatgttcatgaatagccgagttcggtctaaccgcgtgttctttcattctaatgtcaagggatcatccaagttcaccaacataatctctatcacgttaatggaatatatttaatctaatatgttaaactcggaacaagagaacaacctatattgttgcattacacctgttatctcattgaagtcctttactgattccggcagcatttgcttgtgtttt
gi|10 : cttagaagaactatattccatttcccagaacaaaacggtcgacctagagaatatttcgaccgtatcacacagtcttcatcagctttgtgctttgtcattcactcacagcatcacgtgacataggacgagagcattgtacactggaggtatagcaagtccctcgtcccggctgagtgacggccgttgttgttttatcgttaccacctctttgacacgtcgcttaatacggatgtcttcggatgttagtatcatggtgtattcaggtttggtgtgatgtccagtattgtcacaatgttcatgaatagccgagttcggtctaaccgcgtgttctttcattctaatgtcaagggatcatccaagttcaccaacataatctctatcacgt-------T------TATG--------TATA---AAT-------GAC--CCA-G-CACA-AAGC---TGAT----G-AAGACTGT------TTGATAC--GGTCGAAA------TATACT----G-TAAGTGAA-ATGTTTTATTC----TGA------------GT-AATGGAATATAATTCATCTAAG-TT---TCAAATCCAGAACAAGAGAAC-AACTTATATTgttgcattacacctgttatctcattgaagtcctttactgattccggcagcatttgcttgtgtttt
gi|11 : aac--GTGTCACGTGATCGTC----GTAC----GTT-------A------TGTGACACTATACACC---ACT-------GAC--TCA-A-CACA-AAGC---TGAT----G-TAGACTTT------GCGTTAA--AGTTGGAC------TATACT----GTTAAGTCAA-AAGTTTTGTTC----TGA------------GT-AAATGAATAT-CTTTATCAAAGACGAAACTAAATtataggtaccatctgtgatattttgggaatat
gi|12 : c------TATG--------CATG---GAT-------GAC--TCA-G-CACA-AAGC---TGAT----G-AAGATTAT------GTGATAC--GGTCAAAA------TATGCT----G-TAAGTCAATATATTTTGTTC----TGA------------GT-A--------------ATCTAAGATG---TTAATTTCAGAGCAAGAGAAC-AACCTAAATTaag
gi|13 : aac--GTATCACGTGGTCTTCCTATATCA-----CA-------TGATAAATATG--------CATA---AAT-------GAC--CCA-G-CACA-GCGC---TGAT----G-AATACTGT------GTGATAC--GGTCGAAA------TATTCT----G-TAAGTCAA-ATGTTTTGTTC----TGA------------AT-AAAGGAATAgtatcacgtgacataggaagat
gi|14 : G--------CATC---ACT-------GAC--CTG-G-CACT-AGGC---TGAT----G-AAGACTGT------G--ATAC--AGTCAAAA------TATACT----G-TAAGTAAA-AAGTTTTGTTC----TGA------------GT-AAGTGAATACA-TTCATCTATGAaaaatagacttcagaattaatatat
gi|15 : attAAGTCAT-ATGTTTTGTTC----TGA------------TT-TATGAAAAATA-TTCA----AGATG---TCAAATACAAAACAAGAGAACAAACCTGTATTgtggtggtacgcgacatgggat
gi|16 : ttttaaatgaatacaaataatttcaaaCTTC----GTCATGTGACG-------C------TGTG--------CATC---ACT-------GAT--CAA-G-CACC-TAAC---TGAT----G-AAGACTGTGATAAAGTGATAA--AGTCGAAA------TATA------A-TAAATCAA-AAGTTTTAT
gi|17 : CAA-ATGTTTTGTTC----TGA------------GT-AATGGAATATAATTAATCTAAGAgatg
gi|17 : ttacaaataagtgTG---AGA-------GAC--CCA-G-CACA-AAGC---TGAT----G-AAGACgtcttcatcagctttgtgctgggtctctca
gi|2 : ttacaaataagtgtcttagattaattatattccattactcagaacaaaacatttgCGAAA------TATACT----G-AAAGTCAA-ATGTTTTGTTC----TGA------------GT-AATGGAATTTAATTAATCTAAGATG---TTAACTGGAGAACTAGAGAAC-AATCTTTATT
gi|20 : tgaaggggattttggtatacgctcataatacacattagttttaacttgattaatgtaatcttaagcaataaataaatacattgtgcatcaaagtaattcataatatttgtgaaatatgttaagtagttttttaattgcgttatatggaccccagtggaataaagtcctcggactttacttggctttccaagcatttcatgtcactttaagatcactgttatttcatttttcaacttatgaactgttaataataagttttcaagtaaaataagacattcaatttgtaagtatttatactgtgataaggtactgaaattgtgtgatacatttatgacattctatgatgttcatagaaaataatagatcaataatttaacAAGCCAA-ATGTTTTGATC----TGA------------GT-CATTGAATAAAGTTCATCTAAGA
gi|22 : tataatcagcatgtcctAGATG---TTAAATCCAGAACAAGAGAAC-AACCTATATT
gi|3 : tcaacTAGATGAACTATATTCCATTACTCAGAACAAAACATTTTACTTACAGAATAATTCGACC--GTATCACACAGTCTTC----AATA----GCT-------T------TGTG--------C-TG---GGT-------CAT--TCATG-CATAGAATCATGTGACATAGG-AAGATCAC------GTGATACA-AG--GAGAGCATTGTACACTTGAGG-TAACTCCA-GTCCCTCATCCCGGTTGAATGACGGCCGTCGT-AATCGAATATAGTTCATCTAAGATG---TTAAATCCAGAAGAAGAGAAC-AACCTATATTa
gi|4 : ttAATTATATTACATTACTCAGAACAAAATATTTGATTTACAGAATATTTCGGCT--GTATCACACAGTCTTC----ATCA----GCTGGGGTCAT------TGTT--------CATGCCTAGTATCGTTTGAC--ATA-GGCACA-AAGA---TGAT----G-AAGACTG----------ATTT--GGTATAAA------TATTCC----G-TAAATCAA-ATGTTTTGTTC----TGC------------AT-AATGGAATAAAGATCATCTAAGATA---TTAAATCCAGAACAAGAGAAC-AATGTATATTgttgt
gi|5 : aac------TATG--------CATG---AAT-------GAT--TCC-T-CACA-AAGC---TGAT----G-AAGACTGT-------T-ATAC--AGTTAAAA------TATACT----C-TAAGTCAA-ATGTTTTATTC----TGA------------GT-AATGAAATATAATTCATCTAAGATG---TTAAATCCAGAACAAGAGAAC-AACCTATATTaaaactcaatgaagtt
gi|6 : catacaatgtgaggatttaatttgtttaattcgaatttacatgccataataactgatacaacTAGATGAACTATATTCCATTACTCAGAATAAAACATTCGACTTGCATAATATTTCGGCC--ATATCACGCAGTCTTC----ATAA----GTT-------T------TGTG--------CAAG---AAT-------GAC--ACA-G-CACA-AAGC---TGAT----G-GATACTGT------GTGATGC--CGTCAAAA------TATTCT----G-CAAGTCAA-ATGTTTTGTTC----TGA------------GTAAATTGTATATAGTTCATCTAAGATG---TTAAATCCAGAACAAGAGAAA-AACCgtatcacgtggcataggaagataagt
gi|7 : GTCGA-ATGTTTTGTTC----TGA------------GT-AATGGAATATAAATCATCTAAGATgaaact
gi|8 : agttagatatttagttttattctgctcccatcatggcatgtcatacagcatatatatatacaaatttacaaaagtaatgataaaaagctaataacattaaaatgatttgttttatctaaaatagttattgTATAGAATGCTCT--CCTTGTGTCACGTGATCATCCTAAGTCATGT-GAT-------TC-----TATG--------CATA---TCT-------GAC--CCA-G-TACA-GAGC---TGAT----G-AAGACTGT----------------GTCGAAA------TATATT---------GTCAA-ATGTTTTGTTC----TGA------------GT-AATAAAGTA-------------ATG------------G---AAGAGAAC-AACCTATAcatcgaaatat
gi|9 : acaaacTATTTCGACC--ATATCACACAGTCTTC----ATCA----ATT-------TC-----TGCGGGGT----CATT---GAT-------GATTACTA-T-CAC-----T---TGAC----ATAAAAATATCAC---GTGAAACAAGAATGAAT------TATACT----G-TAAGTCAA-AA-------TC-------------------AT-AAT---ATATAATTCATCTAAGATG---TTAAATACAGAACAACAGAAC-ATCATATATTcaagagttaacttaaatccttcatcct
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AGTCCCTCATCACAGACGAGTGTCGGCCATTATTGTTTTATAGCTATCGCCTCTTTGACACCTCTTTTAG
Unaligned ( gi|19 ): TCATTGAATTTGTATAAAATATTTCTATGGGGGCCTTTATTAGATACCAAAAATAGTTGTTGTTTTT
Unaligned ( gi|21 ): CAGTATTCAACAGCAACGTGCTTGGTAAGTGGCGTAAAGTGTCACATGACGTAGGATGATC