lowQualScore : 1 1 11111111 222222222 22222222222222222222222222 1111111 111 2222222222
lowQualScore : 1 1 3 22 2 22 3 444 44 44444 1 2 2 11111111 22 22 2 444 555555555 1 444 1 666666 9999999 333 66 1 333 0 2 22222222222222222222222222 4444 2 2 2 9999999999 33 777 33 2 4444444 2 33 222 44 0 2 33 444 5555 7 2 66666 888 0 33 3333333333 2
lowQualScore : . . . .. . .. . ... .. ..... . . . ........ .. .. . ... ......... . ... . ...... ....... ... .. . ... . . .......................... .... . . . .......... .. ... .. . ....... . .. ... .. . . .. ... .... . . ..... ... . .. .......... .
lowQualScore : 7 8 5 44 9 33 3 666 33 55555 8 0 0 88888888 88 99 2 444 777777777 9 444 3 444444 4444444 999 11 4 999 5 4 88888888888888888888888888 5555 1 6 2 7777777777 44 444 77 7 6666666 7 77 999 66 1 9 99 777 7777 5 5 22222 222 8 44 8888888888 5
consensus : ACATAGACATAGACATA-TTTTATTGACTT-AAACT--TTACAGTT--TC-TCATCATTA---TACATACAATTGACAA--TAT-----TTTT-G-CACA-TG-------A--CAGAT--ATAA-GCATTA---TAAACATTA--AAT-TTTGCAAAAGTATAAAATG---TTTAGTA------T-------ATA---GAC--GTGTCT---GTTAAAC-A---------A-AAT------------ATA----TTA-AGTAACA-A----------AA-AACATA---TGATTTACCCATAT--AATCTTAGTAT-TTTACCCA-----CCCAAT-TA--TAATAAA--GTA-ATTCA-GCT--TAT---TTA----TT-AAC-AAC-----AC--ATA--CATAACA---T------TTGACATAGCTTCC-GTGAGAATGTACTATTAATTCATTAATCTAAAATAAAGTTCGGAATAGAGC
Reference ( gi|1 ) : ACATAGACATACACATA-TTTTATTGACTT-AAACT--TAACAGTT--TC-TCATCATTA---TACATACAATTGACAA--TAT-----TTTT-G-CACA-TA-------A--CAGAT--ATAA-GCATTA---TAAACATTA--AAT-TTTGCAAAAGTATAAAATG---TTTAGTA------T-------ATA---GAC--GTGTCT---GTTAAAC-A---------A-AAT------------ATA----TTA-AGTAACA-A----------AA-AACATA---TGATTTACCCATAT--AATCTTAGTAT-TTTACCCG-----CCCAAT-TA--TAATAAA--GTA-ATTCA-GCT--TAT---TTA----TT-AAC-AAC-----AT--ATA--CATAACA---T------TTGACATAGCTTTC-GTGAGAATGTACTATTAATTCATTAATTTAAAATAAAGTTCGGAATAGAGC
gi|11 : ACATAAACATAGAGTTA-TTTTATTGACTA-AAACT--TTAAATTTAGTT-TCATCAGTA---TACATACAACTGACAT--TAT-----TTTT-G-TATA-TG-------A--CACAT--ATAT-GTA-------AAACATT---------TGCAAACGTATA----------T--TA------T-------ATA---CGT--GTATTT---CTTTAAC-ATGAT-----A-AATTAAGTTTC----ACA----TTA-GATAACA-G----------AT-AGCATA---TGATT-----ATTT--AACCTGATCA--TTTAC----------------A--TAATAA---------------T--TAT----------TT-AAC-AAC-----AC--A------------------------------------GTGCGAATGTACTACTCATTCATTAATCTTAAATAAAGTTTGGAATAGAGC
gi|9 : gACATAGAAATATCGATA-TGTTATTGACTT-ACACT----ATATTT--TC-TCATAATTA---TACACACACTTGACAA--TAT-----ATTT-G-TATA-TG-------A--CAGAT--ATAA-CTATTA---AGAATA---------TTTGCAAAAGTACAA------------TA------T-------ATA---ATT--ATCTCT---CTTGAAC-T---------T-AAC------------ATC----GTG-A-TGATATC----------AT-GATATAGT-TGATTT---CATATCAAA---TAACATATTTACCCGTTTTACCCAAT-TA--
gi|33 : tgacaaaaACATAGATATAGACATA-TCTTATT------AGACT--GAACAGTT--TC-TCATCATTA---TACATACAATTGACAC--TAT-----TTTT-gctacagactttttttaattatgaaacttggtaaagtaagacaacaggtcagtatcacaaccataatggctcag
gi|24 : gACATAGAAATAGACATA-TTTTATTGACTT-ATACT--TTACAGTT--TCTTTACCATTA---TACATACAATGGACAC--TCC-----GTTA-G-CACG-TG-------A--CATAT--TTAtaatattatatg
gi|37 : ACATAGACATAGACGTA-TTTTACTGACTTTAAACT--TTTCAGTT--TT-TCATCATGA---TACATACAATttacatgctacacgacatcagtttcctgtgtaaca
gi|38 : CATAGACATAGACGTA-TTTTATTGACTTTAAACT--TTTCAGTT--TT-TCATCATGA---TACATACAAT
gi|3 : ATATACATAGACATA-TTTTATTGACTT-AAACT--TTACAGTT--TC-TCATCATTA---TACATACAACTGACCA--TAT-----TTTT-G-CACA-TG-------A--CATAT--ATGA-GCATTA---TAAACATTA--AAT-TTTGCAAAAGTATAAAATG---TTTAGTA------T-------AAA---GAC--GTGTCT---GTTAAAC-A---------A-ACT------------ATA----TTA-AGTAACA-A----------AA-AACATA---TGATTTACCCATAC--AATATTAGTAT-TTTACCCA-----CCCAAT-TA--TAATAAA--GTA-ATTCA-GCT--TAT---TTA----TT-AAC-AAC-----AC--ATA--CATAACA---T------TTGACATAACTTTC-GTGAGAATGTACTATTAATTCATTAATTTAACATAAAGTTCGGAATAG
gi|2 : ATAGACATAGAAATA-TTTTATTGACTT-AAAAT--TTACAGTT--TC-TCATCATTA---TACAAACAATTAACAA--TAT-----TTT--G-CACA-TT-------A--CAGAT--ATAA-GCATTA---TAAAGATTA--AAT-TTTGAAAAAGTATAAAATG---TTAAGTA------T-------ATA---GAC--GTGTCT---GTTAAAC-A---------T-AAT------------GTA----TTA-AGTAACA-A----------AA-AACATA---TGATATATCCATAT--AATCTTAGTAT-TTTACCCA-----ACCAAT-TAACCAAAAAA--ATT-ATTTA-GCT--GAT---TAA----TT-AAC-AAC-----AC--ATA--CATAACAT--T------TTGACTTAGCTTCC-GTGAGAATGTACTATTAGTTCATGAATTTAAAATAAAGTTCGGAATAGAGCg
gi|10 : ATAGACATAGACATA-TTTTATTGACTT-AAACT--TTACAATT--TC-TCATCATTA---TACATACAATTGACAA--CAT-----TTTT-G-CACA-TG-------A--CAGAT--ATAA-ACATTA---TAAACATTA--AAT-TTTGTAAAAGTATAAAATG---TTTAGTA------T-------AAA---GAC--GTGCTT---GTTAAAC-A---------A-AAT------------ATA----TTA-AGTAACA-A----------AA-AACATA---TGATTTACCCATAT--AATCTTAGAAT-TTTACCCA-----CCAAAT-AA--TATTAAA--GTA-ATTCA-GCT--TAT---TTA----TT-TAC-AAC-----AC--ATA--CATAACA---T------TTGACATAACTT
gi|17 : ATAGACATAGACACA-GTTTATTGACTT-AAACT--TTACAGTT--TC-TCATCATTA---TACATACAATTGGCAA--TAT-----TTTT-G-CACA-TG-------A--CAGAT--TTAT-GCATTA---TGAACA---------CTTGAAAAAGTATAAAATGATATCTGGTA------TTCAAATCATG---GGC--GCG-GT---GTGGAAT-------------AAT------------GTG----TTACAGTAA
gi|4 : TAGACATAAACATA-TTTTATTGACTA-AAACT--TTACAGTT--TC-TCATCATTA---TATATACTATTGACAA--TAG-----TTTT-G-CACA-TG-------A--CAGAT--ATAA-GCATTA---TAAACATTG--AAT-TTTGCAAGAGTATAAAATG---TTTAGTA------TA------ATA---TAC--GTGTTT---GTTAAAC-A---------A-AAT------------ATA----TTA-AGTAACA-A----------AA-AA-ATA---TGATTTACCCATAT--AATCTTAGTAT-TTTACCCA-----CCAAAT-TA--TAATAAA--GTT-ATTCA-GCT--TAT---TTA----TT-AAC-AAC-----AC--ATA--CATAACA---T------TTGACATAACTTTC-GTGAGAATATACTATTAATTCATTAATTTAATATTAAGTTCGGAATAG
gi|8 : TAGACATAGACATA-TTTAATTGACTT-A-------AAC-------C-T---------------TACAGT-----A--T-T-----TTTT-G-TACA-TG-------G--CACAT--ATAA-GCATTA---GGGACATTA--A-------CAAAGGTA------------TAGTA------T-------ATG---CTG--GTCTCT---CTTGAAT-ATGACATGGTA-AGTTTA---------ATA----TTA-CGTAACA-A----------AA-AGCA-A---TGTTTTACCCACAT--ACTCTGAGTAT-ATTA---------CTCAAT-CA--T---------TA-ACT---GAT--TAT---TTATTATTT-AAC-AAC-----AC--ATT--TGTAACATATT------TTCACATAGCTTTA-GTTAGTATGCACTATTGTTTCATTAATCAACATTAAAGTTCGGAAT
gi|22 : TAGGCAGACACAT---TTTATTGATTT-AAACT--T-ACAGTT--TCTTTGTCGTTA---TACACACACTTGACACGTTAT-----ATTT-G-TACATTT-------G--CAGAT--TTAA-ACATAA---GGAACA---------TTTGCAAAAGTA-AAA--G---TATAG--------T-------ATA---GACTTGTATCT---Gctaaa
gi|13 : TAAACATAGCCATA-TTTTATTGACTT-AAACT--TTACAGTT--T--TCATCATTAT--TAT-TACAAATGACAT--TAA-----TTTT-G-TATA-GG-------A--CAGATACATGATGC-TTACCCTAACCATTAGGAGCATTTGCGAAAGTATGAAATG---TATAGTA------T-------ATAATTAACTATTATTT---ATTTAAC-A---------A-AAC-------------------------TGACA-T----------AT-AACATATTTTGATTTA
gi|7 : AGACATAGACATA-TTTTATTAACTT-AAACT--TTACAGTT--TC-TCATCATTT---GACATACACTTGACAA--TAT-----GTTT-G-CACA-TG-------A--CAGAT--ATAA-GCATTA---TAAATATTA--AAT-ACTGAAAAAGTATAAAATG---TT-AGTA------T-------GTA---GAC--GT---------------------------------------------------A-AGTAACA-A----------AA-AACATA---TGATTTACCCATAT--AGTCTGAGTAT-TTTATCCA-----ATTAAT-TA--TAATAAA---TATATTCA-GCT--TTT---TT-----TT-AAC-AAC-----AC--AAA--CATAACA---A------TTGACATAACTTGC-TTGAGAATGTCCTATTAGTTCATTAATTTAAAATAAAGTTCGGAATAGAGacttcaatgagaacgttatattaattaattaatataaaataaagttcggaatcg
gi|31 : AGACATGGCCATA-TTTTATTGGATG-AAATT--TAACAGAT--GT-TCATCATTATCCTACACACTATTGGCAA--TAT-----TATT-
gi|16 : ataATAGACATA-GTTTATTGACTT-AAACT--TTACAGTT--TC-TCATCATTA---TACCTACAATTGACAA--TAT-----ATTT-G-CACA-TG-------A--CAAAT--TTAA-GCATTA---TGAATA---------TTTGAAAAAGAATAAAAGG---TTTAGTA------T-------ATA---GAC--GTATCT---GTTAAACTA---------ACAAC------------AAA----TT--ACCAACA-A----------Aatatgtgat
gi|28 : ACATATACTTTTATTTACTT-AAATTGTTTACAGTT--TC-TCATAATTA---CAAAGACAATTTAC-A--TAT-----ATGT-GCCGCA-TA-------GTTCCGAT--CTAA-ACtagtttcttctcaattattattattatac
gi|5 : tgactcgaacagaACATA-TTTTAATGACTT-AAACT--TTACAGTT--TC-TCATCATTA---TACATACAATTGACAA--TAT-----TTTT-G-CTCA-TG-------A--CAGAT--ATAA-GCATTA---TAAACATTA--AAT-TTTGAAAAAGTATAAAATG---TTTAGTACATGTAT-------ATA---GAC--GTGTCT---GTTAAAC-A---------A-AAT------------ATA----TTA-AGTAACC-A----------AA-AACATA---TGTTTTACCCATAT--AATCTTAGTAT-TTTACCCA-----CCAAAT-TA--TACTAAA--TTT-ATTCA-GTT--TAT---TTA----TT-AAC-ACC-----AC--AAA--CATAACT---T------TTGGCATAACTTTC-ATGAGAATGTACTATTAAATCATTGATTTAAAAAAAAGTTCATAATAGA
gi|30 : gACATA-TTTTATTGATTT-GAACT--TAACAGTT--TC-CTGTTATTA---TACATACGAATGACAAT-TATTTTAGTTTT-A-TACA-TG-------A--C
gi|20 : cggcattgACA-TTTCATTGACTT-AAACT--TGACAGTT--TC-TCAACAGTA---TACATGCAATTGACAA--TAT-----TTTT-G-TACA-TC-------A--CTGAT--ATAA-GCATT
gi|12 : caaag-TTTTATTCACCT-AAACT--TTACAATT--TC-TCATCATTA---CACATACAATTGACAA--AAT-----TTTT-G-CACA-TA-------A--AAGAT--TTAA-GCATTA---TGAA------------TT----AAGTATAAAATG---TTTAGTA------T-------ATA---GAC--GTATCT---GTTGAAC-A---------A-AAT------------ATA----TCA-AATAACA-A----------AA-AACATA---TAATTTACCCATAT--AATCTTGGTAT-ATTCCCCA-----ACCAAT-TA--TAATAAA--TTA-ATTCA-GCT--TAT---TTA----TT-AAC-GAC-----AT--AAA--CATAACAT--T------TTGACATTGCTTCC-GTAAGAATGTAATATTtctctcgttaacataacatagtacttgggtaacgaaggaacattcgatttacctatttactctgagtagttaaccca
gi|6 : TTTATTGACTT-AAACT--TTACAGTT--TC-TCATCATTA---AACATATAATTGACAA--TAT-----TTTT-G-CACA-TG-------A--CAGAT--ATAA-GCATTA---TAAACATTA--AAT-TTTGCAAAAGTATAAAATG---TTTAGTA------T-------GTA---GAC--GTGTCT---GTTAAAC-A---------A-AAC------------ATA----TTA-AGTAACA-A----------AA--ACATA---TGATTTACCCATAT--AATCTTAGTAT-TTTACCCA-----CCCAAT-TA--TAATAAA--GTA-ATTCA-GCT--TAT---TTA----TT-AAC-AAC-----AC--ATA--CATAACA---T------TTGACATAGCTTTC-GTGAGAATGTACTATTAATTCATTAATTTAAAATAAAGTTCGGAATAGAG
gi|21 : AGTT--GC-TCATTATTC---TACATACAACTTGCAA---AT-----CTTTAG-TATA-TATAGCACTA--TATAT--ATAT-GCATGA---GAAACATT---------TGAAAAAGTATCAAATG---TACAGCA------T-------GTA---CTT--GCGTCT---GTTTAAC-A---------T-AATTTGCTGAGATTCATA----TTG-A-TAATA-A----------AT-ACAATA---TGATTT
gi|14 : A------T-------ATA---GAC--GTGTCT---GTTAAAC-A---------A-AAT------------ATA----TCA-AATAACA-A----------AA-AACATA---TGATTTACCCATAT--AATCTTAGTAT-TTTACCCA-----ACCAAT-TA--TAATAAA--TTA-ATTCA-GCT--TAT---TTA----TT-AAC-AAC-----AC--ATA--CATAACA---T------TTGACATAGCTTTC-GTGAGATTTTACTATTAATTCATTAATTTAAAATAACGTTTGGAATGGAG
gi|20 : A------T-------ATA---AGC--ATTTCTCTCGTTAA-C-A---------T-AAC------------ATAGTACTTG-GGTAACG-A----------AGGAACATT---CGATTTACCTATTT--ACTCTGAGTAG-TTAACCC
gi|18 : caaagacatttcattgacttaaacttgacagtttctcaacagtatacatgcaattgacaatatttttgtacatcactg------------ATA----CTA-ACTAACA-A----------AT-AGTCTA---TGTTTTATCTATAT--ACTCGGACTTT-TTT-CCCA-----ATCAAT-TA--TTATAA---TTA-TTTCA------TATAAATTA----TTTAAC-CAC-----AC--ACAAACACAACA---TACA---TTGACGTAGCTTCA-GCGAAAATGTACTGTAGATTCATTAATCTAAGATAAAGTTa
gi|19 : ------------ATA----TTA-AATAATA-ACCGGCATTCCAT-AACATA---TGCTTTGTCCAAAT--ACTCCTA------------------CTTAAT-CA----ATAAATCGT---TTCAAGTT--TAT---CAC----TT-AAC-AAC-----AA--ATA--TACAACA---TATCAGTTTAACTTAGTTTCA-GTGA-----CACTATGCATTCGTTAGTCTAAAATAAAGTTCGACACAGAGagac
gi|13 : AATGTA--TAGTATA---TA-ATT-A-ACTATTAT---TTA----TTTAAC-AAA-----ACTGACA--TATAACA---TATT---TTGATTTAACTTCA-ATGAGAACGTTATATTAATTAATTAATATAAAATAAAGTTCGGAAT
gi|25 : taaacatagccatattttattgacttaaactttacagttttcatcattattattacaaatgacattaattttgtataggacagatacatgatgcttaccctaaccattaggagcatttgcgaaagtatgaT---TTA----TTCAACTAACTTGCTAT--ATA--CAAAACA---TATT---TTGACATAGCTTCA-GTGAGAAT-----------TCATTTGTCTAAAATAAAGTTCCAAATAAAGcg
gi|29 : aacaaatattacagtgttcacgcgaat-AAC-AAC-----AC--ATA--CACAACA---T------TTGACATAGCTTTC-GTGAGAGTGATCTAATAATTCATTAATCTAAAATAAAGATCGGAagt
gi|39 : tctcataaacagtcaTTTCAGTGATAATGTACTATTGATTCATTAATCTAAAATATAGTTCGGAACAGAGttggtgcg
9 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|15 ): TCAAATTTCTAAAGCTTCCGATATATATTTGCTAAGTTTAACAAGTTTTGTTCGAAGACTGTAGCAACAATTGGATCATGCTTGAACTTCTAATATAGTATTGTTTTTAATATTATTAAACTTATTTCTAATATCGTTAAACACAGAACACACTAAATAAAATTAAATTAATCTTCAATATCGTTAGTGTGACACAT
Unaligned ( gi|23 ): ATCAAAGATTCTGATACATTATTAGTTTAGTCATTCCACTTTTGATCGAAGAGTGTGGTAACGGTGAGACGTAACCATACTTGGTTTTCTAATATAGTACATGTATGTTTTATAAATTTATTTCTGATAT
Unaligned ( gi|26 ): TTAGCAATACTTATTGAACGTCCCTCGTAACAGTGCACATGTGCATGAAGAAGATTAAATTTTGTAAAAGTACAGGTATGTTGGTACGTGCACTTTGTCGTATCCGTTA
Unaligned ( gi|27 ): CTAATTTTAAAAACTTCCGATGTATATTTGATAAGGTTAGCTAAAAGTTAAATTGTGTTTGTAGAAGTGGGAAAAATTAAACTTTCATACTTGGTATTTTAATATGGTA
Unaligned ( gi|32 ): CTTTCAGTCATAAATAAAGCTATGTTTTATTTTTACTTAGTTAAGTAAGTTCAGTTTTGTTCGATGATTGTCGTAATCATACTTG
Unaligned ( gi|34 ): TGATTATTAAATCAAATCAGTTACTGCAGTCTCTTACATCAAATGTAAGAATATAATATTGCTATATAAAGATTGGAATGGAGC
Unaligned ( gi|35 ): GTCTAATTGCGGAACAATCCGTTATATTACATTGGCTTAGCAAGTTAAATTTTACATTGGTTTCATAGTTTGTAAAAT
Unaligned ( gi|36 ): GTCGAATTTATAAAGCTTCCGATATATATTTGCTAAGTTCAGTTTTATTCTACAAACTATTGTAATAA
Unaligned ( gi|40 ): GTCTAATTTTTAAAGCTTCCGCTAAGTTTAGCAGT
Alignments
lowQualScore : 11111111 111111111 11111111111 222222222222 111 2222222222
lowQualScore : 1 3 22 22 3 222 1 5555 1 44444 1 1 5555555 00000000 22 2 333 666666666 1 2 333 333 2 555555 8888888 22 333 55 1 333 2 2 33333333333 111111111111 2 2 2 2 2 9999999999 22 666 33 1 2 0 66666 2 33 111 33 2 33 444 5555 7 2 55555 33 0 33 1111111111 00
lowQualScore : . . .. .. . ... . .... . ..... . . ....... ........ .. . ... ......... . . ... ... . ...... ....... .. ... .. . ... . . ........... ............ . . . . . .......... .. ... .. . . . ..... . .. ... .. . .. ... .... . . ..... .. . .. .......... ..
lowQualScore : 7 3 33 22 2 888 6 2222 7 22222 7 7 9999999 88888888 88 1 999 888888888 5 2 999 222 2 888888 5555555 88 555 55 0 555 2 2 88888888888 000000000000 0 0 0 0 1 2222222222 77 999 44 6 5 1 22222 5 44 444 77 7 77 444 3333 1 4 99999 22 2 22 9999999999 88
consensus : ACATAGACATAGACATATTTTATT-GACTT-AAACT--TTACAGTT--TC-TCATCATTA---TACA-TACAATTGACA----A-TAT-----TT-TT-GCACAT-------GACAG--------AT--ATAA-GCATTA---TAAACATTA--AAT-TTTGCAAAAGTATAAA-ATG---TT--TA-GTA------T-------A--TA---GAC--GTGTCT---GTTAA-AC-A---------A-AAT------------A-TA-TTA-AGTAACA-A----------AA-AACATA---TGATTTACCCATAT--AATCTTAGTAT-TTTACCC-----ACCCAAT-TA--TAATAAA--GTA-ATTCA-GCT--TAT---TTA----TT-AAC-AAC-----AC--ATA--CATAACA---T------TTGACATAGCTTCCGTGAGAATGTACTATTAATTCATTAATCTAAAATAAAGTTCGGAATAGAGC
Reference ( family-2538 ) : ACATAGACATAGACATATTTTATT-GACTT-AAACT--TTACAGTT--TC-TCATCATTA---TACA-TACAATTGACA----A-TAT-----TT-TT-GCACAT-------GACAG--------AT--ATAA-GCATTA---TAAACATTA--AAT-TTTGCAAAAGTATAAA-ATG---TT--TA-GTA------T-------A--TA---GAC--GTGTCT---GTTAA-AC-A---------A-AAT------------A-TA-TTA-AGTAACA-A----------AA-AACATA---TGATTTACCCATAT--AATCTTAGTAT-TTTACCC-----ACCCAAT-TA--TAATAAA--GTA-ATTCA-GCT--TAT---TTA----TT-AAC-AAC-----AC--ATA--CATAACA---T------TTGACATAGCTTCCGTGAGAATGTACTATTAATTCATTAATCTAAAATAAAGTTCGGAATAGAGC
gi|1 : ACATAGACATACACATATTTTATT-GACTT-AAACT--TAACAGTT--TC-TCATCATTA---TACA-TACAATTGACA----A-TAT-----TT-TT-GCACAT-------AACAG--------AT--ATAA-GCATTA---TAAACATTA--AAT-TTTGCAAAAGTATAAA-ATG---TT--TA-GTA------T-------A--TA---GAC--GTGTCT---GTTAA-AC-A---------A-AAT------------A-TA-TTA-AGTAACA-A----------AA-AACATA---TGATTTACCCATAT--AATCTTAGTAT-TTTACCC-----GCCCAAT-TA--TAATAAA--GTA-ATTCA-GCT--TAT---TTA----TT-AAC-AAC-----AT--ATA--CATAACA---T------TTGACATAGCTTTCGTGAGAATGTACTATTAATTCATTAATTTAAAATAAAGTTCGGAATAGAGC
gi|10 : ATAGACATAGACATATTTTATT-GACTT-AAACT--TTACAATT--TC-TCATCATTA---TACA-TACAATTGACA----A-CAT-----TT-TT-GCACAT-------GACAG--------AT--ATAA-ACATTA---TAAACATTA--AAT-TTTGTAAAAGTATAAA-ATG---TT--TA-GTA------T-------A--AA---GAC--GTGCTT---GTTAA-AC-A---------A-AAT------------A-TA-TTA-AGTAACA-A----------AA-AACATA---TGATTTACCCATAT--AATCTTAGAAT-TTTACCC-----ACCAAAT-AA--TATTAAA--GTA-ATTCA-GCT--TAT---TTA----TT-TAC-AAC-----AC--ATA--CATAACA---T------TTGACATAACTT
gi|11 : ACATAAACATAGAGTTATTTTATT-GACTA-AAACT--TTAAATTTAGTT-TCATCAGTA---TACA-TACAACTGACA----T-TAT-----TT-TT-GTATAT-------GACAC--------AT--ATAT-GTA-------AAACATT---------TGCAAACGTATA-------------T---TA------T-------A--TA---CGT--GTATTT---CTTTA-AC-ATGAT-----A-AATTAAGTTTC----A-CA-TTA-GATAACA-G----------AT-AGCATA---TGATT-----ATTT--AACCTGATCA--TTTAC----------------A--TAATAA---------------T--TAT----------TT-AAC-AAC-----AC--A-----------------------------------GTGCGAATGTACTACTCATTCATTAATCTTAAATAAAGTTTGGAATAGAGC
gi|12 : gTTTTATT-CACCT-AAACT--TTACAATT--TC-TCATCATTA---CACA-TACAATTGACA----A-AAT-----TT-TT-GCACAT-------AAAAG--------AT--TTAA-GCATTA---TGAA------------TT----AAGTATAAA-ATG---TT--TA-GTA------T-------A--TA---GAC--GTATCT---GTTGA-AC-A---------A-AAT------------A-TA-TCA-AATAACA-A----------AA-AACATA---TAATTTACCCATAT--AATCTTGGTAT-ATTCCCC-----AACCAAT-TA--TAATAAA--TTA-ATTCA-GCT--TAT---TTA----TT-AAC-GAC-----AT--AAA--CATAACAT--T------TTGACATTGCTTCCGTAAGAATGTAATATT
gi|13 : TAAACATAGCCATATTTTATT-GACTT-AAACT--TTACAGTT--T--TCATCATTA---T-TATTACAAATGACA----T-TAA-----TT-TT-GTATAG-------GACAG--------ATACATGATGC-TTACCCTAACCATTAGGAGCATTTGCGAAAGTATGAA-ATG---TA--TA-GTA------T-------A--TAATTAACTATTATTT---ATTTA-AC-A---------A-AAC-----------------------TGACA-T----------AT-AACATATTTTGATTTA
gi|13 : AATGTA--TAGTATA---TA-ATT-A-ACTATTAT---TTA----TTTAAC-AAA-----ACTGACA--TATAACA---TATT---TTGATTTAACTTCAATGAGAACGTTATATTAATTAATTAATATAAAATAAAGTTCGGAATacttcaatgagaacgttatattaattaattaatataaaataaagttcggaatcg
gi|14 : taaacatagccatattttattgacttaaactttacagttttcatcattattattacaaatgacattaattttgtataggacagatacatgatgcttaccctaaccattaggagcatttgcgaaagtatgaA------T-------A--TA---GAC--GTGTCT---GTTAA-AC-A---------A-AAT------------A-TA-TCA-AATAACA-A----------AA-AACATA---TGATTTACCCATAT--AATCTTAGTAT-TTTACCC-----AACCAAT-TA--TAATAAA--TTA-ATTCA-GCT--TAT---TTA----TT-AAC-AAC-----AC--ATA--CATAACA---T------TTGACATAGCTTTCGTGAGATTTTACTATTAATTCATTAATTTAAAATAACGTTTGGAATGGAGcg
gi|16 : ATAGACATAGTTTATT-GACTT-AAACT--TTACAGTT--TC-TCATCATTA---TACC-TACAATTGACA----A-TAT-----AT-TT-GCACAT-------GACAA--------AT--TTAA-GCATTA---TGAATA---------TTTGAAAAAGAATAAA-AGG---TT--TA-GTA------T-------A--TA---GAC--GTATCT---GTTAA-ACTA---------ACAAC------------A-AA-TT--ACCAACA-A----------A
gi|17 : ATAGACATAGACACAGTTTATT-GACTT-AAACT--TTACAGTT--TC-TCATCATTA---TACA-TACAATTGGCA----A-TAT-----TT-TT-GCACAT-------GACAG--------AT--TTAT-GCATTA---TGAACA---------CTTGAAAAAGTATAAA-ATGATATC--TG-GTA------TTCAAATCA--TG---GGC--GCG-GT---GTGGA-AT-------------AAT------------G-TG-TTACAGTAAtagtttcttctcaattattattattatac
gi|18 : ------------A-TA-CTA-ACTAACA-A----------AT-AGTCTA---TGTTTTATCTATAT--ACTCGGACTTT-TTT-CCC-----AATCAAT-TA--TTATAA---TTA-TTTCA------TATAAATTA----TTTAAC-CAC-----AC--ACAAACACAACA---TACA---TTGACGTAGCTTCAGCGAAAATGTACTGTAGATTCATTAATCTAAGATAAAGTT
gi|19 : ------------A-TA-TTA-AATAATA-ACCGGCATTCCAT-AACATA---TGCTTTGTCCAAAT--A--CT-----------CCT-----ACTTAAT-CA----ATAAATCGT---TTCAAGTT--TAT---CAC----TT-AAC-AAC-----AA--ATA--TACAACA---TATCAGTTTAACTTAGTTTCAGTGA-----CACTATGCATTCGTTAGTCTAAAATAAAGTTCGACACAGAGagac
gi|2 : ATAGACATAGAAATATTTTATT-GACTT-AAAAT--TTACAGTT--TC-TCATCATTA---TACA-AACAATTAACA----A-TAT-----TT-T--GCACAT-------TACAG--------AT--ATAA-GCATTA---TAAAGATTA--AAT-TTTGAAAAAGTATAAA-ATG---TT--AA-GTA------T-------A--TA---GAC--GTGTCT---GTTAA-AC-A---------T-AAT------------G-TA-TTA-AGTAACA-A----------AA-AACATA---TGATATATCCATAT--AATCTTAGTAT-TTTACCC-----AACCAAT-TAACCAAAAAA--ATT-ATTTA-GCT--GAT---TAA----TT-AAC-AAC-----AC--ATA--CATAACAT--T------TTGACTTAGCTTCCGTGAGAATGTACTATTAGTTCATGAATTTAAAATAAAGTTCGGAATAGAGC
gi|20 : CAAAGACAT--TTCATT-GACTT-AAACT--TGACAGTT--TC-TCAACAGTA---TACA-TGCAATTGACA----A-TAT-----TT-TT-GTACAT-------CACTG--------AT--ATAA-GCATT
gi|20 : A------T-------A--TA---AGC--ATTTCTCTCGTTAACAT-A---------A-CAT------------AGTACTTG-GGTAACG-A----------AGGAACATT---CGATTTACCTATTT--ACTCTGAGTAG-TTAACCC-----Atctctcgttaacataacatagtacttgggtaacgaaggaacattcgatttacctatttactctgagtagttaaccca
gi|21 : caaagacatttcattgacttaaacttgacagtttctcaacagtatacatgcaattgacaatatttttgtacatcactgAGTT--GC-TCATTATTC---TACA-TACAACTTGCA----A--AT-----CT-TTAGTATAT--------ATAGCACTATATAT--ATAT-GCATGA---GAAACATT---------TGAAAAAGTATCAA-ATG---TA--CA-GCA------T-------G--TA---CTT--GCGTCT---GTTTA-AC-A---------T-AATTTGCTGAGATTCA-TA-TTG-A-TAATA-A----------AT-ACAATA---TGATTT
gi|22 : TAGGCA--GACACATTTTATT-GATTT-AAAC---TTACAGTT--TCTTTGTCGTTA---TACA-CACACTTGACACGTTA-TAT-----TT-GT-ACATTT-------G-CAG--------AT--TTAA-ACATAA---GGAACA---------TTTGCAAAAGTA-AAA---G---TA--TA-G--------T-------A--TA---GACTTGTATCT---G
gi|24 : ACATAGAAATAGACATATTTTATT-GACTT-ATACT--TTACAGTT--TCTTTACCATTA---TACA-TACAATGGACA----C-TCC-----GT-TA-GCACGT-------GACAT--------AT--TTA
gi|25 : T---TTA----TTCAACTAACTTGCTAT--ATA--CAAAACA---TATT---TTGACATAGCTTCAGTGAGAAT-----------TCATTTGTCTAAAATAAAGTTCCAAATAAAGttacatgctacacgacatcagtttcctgtgtaaca
gi|26 : aacaaatattacagtgttcacgcgaatTTAGCA----A-TAC-----TTATT-GAACGTCCCTCGTAACAGTGC-----AC--ATGT-GCATGA---AGAAGATTA--AAT-TTTGTAAAAGTACAGGTATG---TTGGTACGTG------C-------ACTTT---GTC--GTATCC---GTTAagt
gi|28 : ACATATAC---TTTTATT-TACTT-AAATTGTTTACAGTT--TC-TCATAATTA---CAAA-GACAATTTACAT---A-TAT-----
gi|29 : tgactcgaacaga-AAC-AAC-----AC--ATA--CACAACA---T------TTGACATAGCTTTCGTGAGAGTGATCTAATAATTCATTAATCTAAAATAAAGATCGGAgtgccgcatagttccgatctaaac
gi|3 : tctcataaacagtcaATATACATAGACATATTTTATT-GACTT-AAACT--TTACAGTT--TC-TCATCATTA---TACA-TACAACTGACC----A-TAT-----TT-TT-GCACAT-------GACAT--------AT--ATGA-GCATTA---TAAACATTA--AAT-TTTGCAAAAGTATAAA-ATG---TT--TA-GTA------T-------A--AA---GAC--GTGTCT---GTTAA-AC-A---------A-ACT------------A-TA-TTA-AGTAACA-A----------AA-AACATA---TGATTTACCCATAC--AATATTAGTAT-TTTACCC-----ACCCAAT-TA--TAATAAA--GTA-ATTCA-GCT--TAT---TTA----TT-AAC-AAC-----AC--ATA--CATAACA---T------TTGACATAACTTTCGTGAGAATGTACTATTAATTCATTAATTTAACATAAAGTTCGGAATAGttggtgcg
gi|30 : GGCATTGACATATTTTATT-GATTT-GAACT--TAACAGTT--TC-CTGTTATTA---TACA-TACGAATGACA----ATTATTTTAGTT-TT-ATACAT-------GACg
gi|31 : cAGACATGGCCATATTTTATT-GGATG-AAATT--TAACAGAT--GT-TCATCATTATCCTACA-CACTATTGGCA----A-TAT-----TA-TT-ATATGT-------GA
gi|33 : ataACATAGATATAGACATATCTTATTAGACTG-AA--------CAGTT--TC-TCATCATTA---TACA-TACAATTGACA----C-TAT-----TT-TT-t
gi|37 : gACATAGACATAGACGTATTTTACT-GACTTTAAACT--TTTCAGTT--TT-TCATCATGA---TACA-TACAATtaatattatatg
gi|38 : CATAGACATAGACGTATTTTATT-GACTTTAAACT--TTTCAGTT--TT-TCATCATGA---TACA-TACAAT
gi|39 : TTCAGTGATAATGTACTATTGATTCATTAATCTAAAATATAGTTCGGAACAGAG
gi|4 : ttTAGACATAAACATATTTTATT-GACTA-AAACT--TTACAGTT--TC-TCATCATTA---TATA-TACTATTGACA----A-TAG-----TT-TT-GCACAT-------GACAG--------AT--ATAA-GCATTA---TAAACATTG--AAT-TTTGCAAGAGTATAAA-ATG---TT--TA-GTA------TA------A--TA---TAC--GTGTTT---GTTAA-AC-A---------A-AAT------------A-TA-TTA-AGTAACA-A----------AA-AA-ATA---TGATTTACCCATAT--AATCTTAGTAT-TTTACCC-----ACCAAAT-TA--TAATAAA--GTT-ATTCA-GCT--TAT---TTA----TT-AAC-AAC-----AC--ATA--CATAACA---T------TTGACATAACTTTCGTGAGAATATACTATTAATTCATTAATTTAATATTAAGTTCGGAATAG
gi|5 : GACATATTTTAAT-GACTT-AAACT--TTACAGTT--TC-TCATCATTA---TACA-TACAATTGACA----A-TAT-----TT-TT-GCTCAT-------GACAG--------AT--ATAA-GCATTA---TAAACATTA--AAT-TTTGAAAAAGTATAAA-ATG---TT--TA-GTACATGTAT-------A--TA---GAC--GTGTCT---GTTAA-AC-A---------A-AAT------------A-TA-TTA-AGTAACC-A----------AA-AACATA---TGTTTTACCCATAT--AATCTTAGTAT-TTTACCC-----ACCAAAT-TA--TACTAAA--TTT-ATTCA-GTT--TAT---TTA----TT-AAC-ACC-----AC--AAA--CATAACT---T------TTGGCATAACTTTCATGAGAATGTACTATTAAATCATTGATTTAAAAAAAAGTTCATAATAGA
gi|6 : TTTATT-GACTT-AAACT--TTACAGTT--TC-TCATCATTA---AACA-TATAATTGACA----A-TAT-----TT-TT-GCACAT-------GACAG--------AT--ATAA-GCATTA---TAAACATTA--AAT-TTTGCAAAAGTATAAA-ATG---TT--TA-GTA------T-------G--TA---GAC--GTGTCT---GTTAA-AC-A---------A-AAC------------A-TA-TTA-AGTAACA-A----------AA--ACATA---TGATTTACCCATAT--AATCTTAGTAT-TTTACCC-----ACCCAAT-TA--TAATAAA--GTA-ATTCA-GCT--TAT---TTA----TT-AAC-AAC-----AC--ATA--CATAACA---T------TTGACATAGCTTTCGTGAGAATGTACTATTAATTCATTAATTTAAAATAAAGTTCGGAATAGAG
gi|7 : AGACATAGACATATTTTATT-AACTT-AAACT--TTACAGTT--TC-TCATCATTT---GACA-TACACTTGACA----A-TAT-----GT-TT-GCACAT-------GACAG--------AT--ATAA-GCATTA---TAAATATTA--AAT-ACTGAAAAAGTATAAA-ATG---TT---A-GTA------T-------G--TA---GAC--GT--------------------------------------------------A-AGTAACA-A----------AA-AACATA---TGATTTACCCATAT--AGTCTGAGTAT-TTTATCC-----AATTAAT-TA--TAATAAA---TATATTCA-GCT--TTT---TT-----TT-AAC-AAC-----AC--AAA--CATAACA---A------TTGACATAACTTGCTTGAGAATGTCCTATTAGTTCATTAATTTAAAATAAAGTTCGGAATAGAG
gi|8 : TAGACATAGACATATTTAATT-GACTT-AAACC--TTACAGT-----------ATT----------------------------T-----TT--T-GTACAT-------GGCAC--------AT--ATAA-GCATTA---GGGACATTA--A-------CAAAGGTA---------------TA-GTA------T-------A--TG---CTG--GTCTCT---CTTGA-AT-ATGACATGGTA-AGTTTA---------A-TA-TTA-CGTAACA-A----------AA-AGCA-A---TGTTTTACCCACAT--ACTCTGAGTAT-ATT---------ACTCAAT-CA--T---------TA-ACT---GAT--TAT---TTATTATTT-AAC-AAC-----AC--ATT--TGTAACATATT------TTCACATAGCTTTAGTTAGTATGCACTATTGTTTCATTAATCAACATTAAAGTTCGGAAT
gi|9 : ACATAGAAATATCGATATGTTATT-GACTT-ACACT----ATATTT--TC-TCATAATTA---TACA-CACACTTGACA----A-TAT-----AT-TT-GTATAT-------GACAG--------AT--ATAA-CTATTA---AGAATA---------TTTGCAAAAGTACAA----------------TA------T-------A--TA---ATT--ATCTCT---CTTGA-AC-T---------T-AAC------------A-TC-GTG-A-TGATATC----------AT-GATATAGT-TGATTT---CATATCAAA---TAACATATTTACCCGTTTTACCCAAT-TA--ctaaa
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TCAAATTTCTAAAGCTTCCGATATATATTTGCTAAGTTTAACAAGTTTTGTTCGAAGACTGTAGCAACAATTGGATCATGCTTGAACTTCTAATATAGTATTGTTTTTAATATTATTAAACTTATTTCTAATATCGTTAAACACAGAACACACTAAATAAAATTAAATTAATCTTCAATATCGTTAGTGTGACACAT
Unaligned ( gi|23 ): ATCAAAGATTCTGATACATTATTAGTTTAGTCATTCCACTTTTGATCGAAGAGTGTGGTAACGGTGAGACGTAACCATACTTGGTTTTCTAATATAGTACATGTATGTTTTATAAATTTATTTCTGATAT
Unaligned ( gi|27 ): CTAATTTTAAAAACTTCCGATGTATATTTGATAAGGTTAGCTAAAAGTTAAATTGTGTTTGTAGAAGTGGGAAAAATTAAACTTTCATACTTGGTATTTTAATATGGTA
Unaligned ( gi|32 ): CTTTCAGTCATAAATAAAGCTATGTTTTATTTTTACTTAGTTAAGTAAGTTCAGTTTTGTTCGATGATTGTCGTAATCATACTTG
Unaligned ( gi|34 ): TGATTATTAAATCAAATCAGTTACTGCAGTCTCTTACATCAAATGTAAGAATATAATATTGCTATATAAAGATTGGAATGGAGC
Unaligned ( gi|35 ): GTCTAATTGCGGAACAATCCGTTATATTACATTGGCTTAGCAAGTTAAATTTTACATTGGTTTCATAGTTTGTAAAAT
Unaligned ( gi|36 ): GTCGAATTTATAAAGCTTCCGATATATATTTGCTAAGTTCAGTTTTATTCTACAAACTATTGTAATAA
Unaligned ( gi|40 ): GTCTAATTTTTAAAGCTTCCGCTAAGTTTAGCAGT
Alignments
lowQualScore : 11111111 111111111 11111111111 222222222222 111 2222222222
lowQualScore : 1 3 22 22 3 222 1 5555 1 44444 1 1 5555555 00000000 22 2 333 666666666 1 2 333 333 2 555555 8888888 22 333 55 1 333 2 2 33333333333 111111111111 2 2 2 2 2 9999999999 22 666 33 1 2 0 66666 2 33 111 33 2 33 444 5555 7 2 55555 33 0 33 1111111111 00
lowQualScore : . . .. .. . ... . .... . ..... . . ....... ........ .. . ... ......... . . ... ... . ...... ....... .. ... .. . ... . . ........... ............ . . . . . .......... .. ... .. . . . ..... . .. ... .. . .. ... .... . . ..... .. . .. .......... ..
lowQualScore : 7 3 33 22 2 888 6 2222 7 22222 7 7 9999999 88888888 88 1 999 888888888 5 2 999 222 2 888888 5555555 88 555 55 0 555 2 2 88888888888 000000000000 0 0 0 0 1 2222222222 77 999 44 6 5 1 22222 5 44 444 77 7 77 444 3333 1 4 99999 22 2 22 9999999999 88
consensus : ACATAGACATAGACATATTTTATT-GACTT-AAACT--TTACAGTT--TC-TCATCATTA---TACA-TACAATTGACA----A-TAT-----TT-TT-GCACAT-------GACAG--------AT--ATAA-GCATTA---TAAACATTA--AAT-TTTGCAAAAGTATAAA-ATG---TT--TA-GTA------T-------A--TA---GAC--GTGTCT---GTTAA-AC-A---------A-AAT------------A-TA-TTA-AGTAACA-A----------AA-AACATA---TGATTTACCCATAT--AATCTTAGTAT-TTTACCC-----ACCCAAT-TA--TAATAAA--GTA-ATTCA-GCT--TAT---TTA----TT-AAC-AAC-----AC--ATA--CATAACA---T------TTGACATAGCTTCCGTGAGAATGTACTATTAATTCATTAATCTAAAATAAAGTTCGGAATAGAGC
Reference ( family-2538 ) : ACATAGACATAGACATATTTTATT-GACTT-AAACT--TTACAGTT--TC-TCATCATTA---TACA-TACAATTGACA----A-TAT-----TT-TT-GCACAT-------GACAG--------AT--ATAA-GCATTA---TAAACATTA--AAT-TTTGCAAAAGTATAAA-ATG---TT--TA-GTA------T-------A--TA---GAC--GTGTCT---GTTAA-AC-A---------A-AAT------------A-TA-TTA-AGTAACA-A----------AA-AACATA---TGATTTACCCATAT--AATCTTAGTAT-TTTACCC-----ACCCAAT-TA--TAATAAA--GTA-ATTCA-GCT--TAT---TTA----TT-AAC-AAC-----AC--ATA--CATAACA---T------TTGACATAGCTTCCGTGAGAATGTACTATTAATTCATTAATCTAAAATAAAGTTCGGAATAGAGC
gi|1 : ACATAGACATACACATATTTTATT-GACTT-AAACT--TAACAGTT--TC-TCATCATTA---TACA-TACAATTGACA----A-TAT-----TT-TT-GCACAT-------AACAG--------AT--ATAA-GCATTA---TAAACATTA--AAT-TTTGCAAAAGTATAAA-ATG---TT--TA-GTA------T-------A--TA---GAC--GTGTCT---GTTAA-AC-A---------A-AAT------------A-TA-TTA-AGTAACA-A----------AA-AACATA---TGATTTACCCATAT--AATCTTAGTAT-TTTACCC-----GCCCAAT-TA--TAATAAA--GTA-ATTCA-GCT--TAT---TTA----TT-AAC-AAC-----AT--ATA--CATAACA---T------TTGACATAGCTTTCGTGAGAATGTACTATTAATTCATTAATTTAAAATAAAGTTCGGAATAGAGC
gi|10 : ATAGACATAGACATATTTTATT-GACTT-AAACT--TTACAATT--TC-TCATCATTA---TACA-TACAATTGACA----A-CAT-----TT-TT-GCACAT-------GACAG--------AT--ATAA-ACATTA---TAAACATTA--AAT-TTTGTAAAAGTATAAA-ATG---TT--TA-GTA------T-------A--AA---GAC--GTGCTT---GTTAA-AC-A---------A-AAT------------A-TA-TTA-AGTAACA-A----------AA-AACATA---TGATTTACCCATAT--AATCTTAGAAT-TTTACCC-----ACCAAAT-AA--TATTAAA--GTA-ATTCA-GCT--TAT---TTA----TT-TAC-AAC-----AC--ATA--CATAACA---T------TTGACATAACTT
gi|11 : ACATAAACATAGAGTTATTTTATT-GACTA-AAACT--TTAAATTTAGTT-TCATCAGTA---TACA-TACAACTGACA----T-TAT-----TT-TT-GTATAT-------GACAC--------AT--ATAT-GTA-------AAACATT---------TGCAAACGTATA-------------T---TA------T-------A--TA---CGT--GTATTT---CTTTA-AC-ATGAT-----A-AATTAAGTTTC----A-CA-TTA-GATAACA-G----------AT-AGCATA---TGATT-----ATTT--AACCTGATCA--TTTAC----------------A--TAATAA---------------T--TAT----------TT-AAC-AAC-----AC--A-----------------------------------GTGCGAATGTACTACTCATTCATTAATCTTAAATAAAGTTTGGAATAGAGC
gi|12 : gTTTTATT-CACCT-AAACT--TTACAATT--TC-TCATCATTA---CACA-TACAATTGACA----A-AAT-----TT-TT-GCACAT-------AAAAG--------AT--TTAA-GCATTA---TGAA------------TT----AAGTATAAA-ATG---TT--TA-GTA------T-------A--TA---GAC--GTATCT---GTTGA-AC-A---------A-AAT------------A-TA-TCA-AATAACA-A----------AA-AACATA---TAATTTACCCATAT--AATCTTGGTAT-ATTCCCC-----AACCAAT-TA--TAATAAA--TTA-ATTCA-GCT--TAT---TTA----TT-AAC-GAC-----AT--AAA--CATAACAT--T------TTGACATTGCTTCCGTAAGAATGTAATATT
gi|13 : TAAACATAGCCATATTTTATT-GACTT-AAACT--TTACAGTT--T--TCATCATTA---T-TATTACAAATGACA----T-TAA-----TT-TT-GTATAG-------GACAG--------ATACATGATGC-TTACCCTAACCATTAGGAGCATTTGCGAAAGTATGAA-ATG---TA--TA-GTA------T-------A--TAATTAACTATTATTT---ATTTA-AC-A---------A-AAC-----------------------TGACA-T----------AT-AACATATTTTGATTTA
gi|13 : AATGTA--TAGTATA---TA-ATT-A-ACTATTAT---TTA----TTTAAC-AAA-----ACTGACA--TATAACA---TATT---TTGATTTAACTTCAATGAGAACGTTATATTAATTAATTAATATAAAATAAAGTTCGGAATacttcaatgagaacgttatattaattaattaatataaaataaagttcggaatcg
gi|14 : taaacatagccatattttattgacttaaactttacagttttcatcattattattacaaatgacattaattttgtataggacagatacatgatgcttaccctaaccattaggagcatttgcgaaagtatgaA------T-------A--TA---GAC--GTGTCT---GTTAA-AC-A---------A-AAT------------A-TA-TCA-AATAACA-A----------AA-AACATA---TGATTTACCCATAT--AATCTTAGTAT-TTTACCC-----AACCAAT-TA--TAATAAA--TTA-ATTCA-GCT--TAT---TTA----TT-AAC-AAC-----AC--ATA--CATAACA---T------TTGACATAGCTTTCGTGAGATTTTACTATTAATTCATTAATTTAAAATAACGTTTGGAATGGAGcg
gi|16 : ATAGACATAGTTTATT-GACTT-AAACT--TTACAGTT--TC-TCATCATTA---TACC-TACAATTGACA----A-TAT-----AT-TT-GCACAT-------GACAA--------AT--TTAA-GCATTA---TGAATA---------TTTGAAAAAGAATAAA-AGG---TT--TA-GTA------T-------A--TA---GAC--GTATCT---GTTAA-ACTA---------ACAAC------------A-AA-TT--ACCAACA-A----------A
gi|17 : ATAGACATAGACACAGTTTATT-GACTT-AAACT--TTACAGTT--TC-TCATCATTA---TACA-TACAATTGGCA----A-TAT-----TT-TT-GCACAT-------GACAG--------AT--TTAT-GCATTA---TGAACA---------CTTGAAAAAGTATAAA-ATGATATC--TG-GTA------TTCAAATCA--TG---GGC--GCG-GT---GTGGA-AT-------------AAT------------G-TG-TTACAGTAAtagtttcttctcaattattattattatac
gi|18 : ------------A-TA-CTA-ACTAACA-A----------AT-AGTCTA---TGTTTTATCTATAT--ACTCGGACTTT-TTT-CCC-----AATCAAT-TA--TTATAA---TTA-TTTCA------TATAAATTA----TTTAAC-CAC-----AC--ACAAACACAACA---TACA---TTGACGTAGCTTCAGCGAAAATGTACTGTAGATTCATTAATCTAAGATAAAGTT
gi|19 : ------------A-TA-TTA-AATAATA-ACCGGCATTCCAT-AACATA---TGCTTTGTCCAAAT--A--CT-----------CCT-----ACTTAAT-CA----ATAAATCGT---TTCAAGTT--TAT---CAC----TT-AAC-AAC-----AA--ATA--TACAACA---TATCAGTTTAACTTAGTTTCAGTGA-----CACTATGCATTCGTTAGTCTAAAATAAAGTTCGACACAGAGagac
gi|2 : ATAGACATAGAAATATTTTATT-GACTT-AAAAT--TTACAGTT--TC-TCATCATTA---TACA-AACAATTAACA----A-TAT-----TT-T--GCACAT-------TACAG--------AT--ATAA-GCATTA---TAAAGATTA--AAT-TTTGAAAAAGTATAAA-ATG---TT--AA-GTA------T-------A--TA---GAC--GTGTCT---GTTAA-AC-A---------T-AAT------------G-TA-TTA-AGTAACA-A----------AA-AACATA---TGATATATCCATAT--AATCTTAGTAT-TTTACCC-----AACCAAT-TAACCAAAAAA--ATT-ATTTA-GCT--GAT---TAA----TT-AAC-AAC-----AC--ATA--CATAACAT--T------TTGACTTAGCTTCCGTGAGAATGTACTATTAGTTCATGAATTTAAAATAAAGTTCGGAATAGAGC
gi|20 : CAAAGACAT--TTCATT-GACTT-AAACT--TGACAGTT--TC-TCAACAGTA---TACA-TGCAATTGACA----A-TAT-----TT-TT-GTACAT-------CACTG--------AT--ATAA-GCATT
gi|20 : A------T-------A--TA---AGC--ATTTCTCTCGTTAACAT-A---------A-CAT------------AGTACTTG-GGTAACG-A----------AGGAACATT---CGATTTACCTATTT--ACTCTGAGTAG-TTAACCC-----Atctctcgttaacataacatagtacttgggtaacgaaggaacattcgatttacctatttactctgagtagttaaccca
gi|21 : caaagacatttcattgacttaaacttgacagtttctcaacagtatacatgcaattgacaatatttttgtacatcactgAGTT--GC-TCATTATTC---TACA-TACAACTTGCA----A--AT-----CT-TTAGTATAT--------ATAGCACTATATAT--ATAT-GCATGA---GAAACATT---------TGAAAAAGTATCAA-ATG---TA--CA-GCA------T-------G--TA---CTT--GCGTCT---GTTTA-AC-A---------T-AATTTGCTGAGATTCA-TA-TTG-A-TAATA-A----------AT-ACAATA---TGATTT
gi|22 : TAGGCA--GACACATTTTATT-GATTT-AAAC---TTACAGTT--TCTTTGTCGTTA---TACA-CACACTTGACACGTTA-TAT-----TT-GT-ACATTT-------G-CAG--------AT--TTAA-ACATAA---GGAACA---------TTTGCAAAAGTA-AAA---G---TA--TA-G--------T-------A--TA---GACTTGTATCT---G
gi|24 : ACATAGAAATAGACATATTTTATT-GACTT-ATACT--TTACAGTT--TCTTTACCATTA---TACA-TACAATGGACA----C-TCC-----GT-TA-GCACGT-------GACAT--------AT--TTA
gi|25 : T---TTA----TTCAACTAACTTGCTAT--ATA--CAAAACA---TATT---TTGACATAGCTTCAGTGAGAAT-----------TCATTTGTCTAAAATAAAGTTCCAAATAAAGttacatgctacacgacatcagtttcctgtgtaaca
gi|26 : aacaaatattacagtgttcacgcgaatTTAGCA----A-TAC-----TTATT-GAACGTCCCTCGTAACAGTGC-----AC--ATGT-GCATGA---AGAAGATTA--AAT-TTTGTAAAAGTACAGGTATG---TTGGTACGTG------C-------ACTTT---GTC--GTATCC---GTTAagt
gi|28 : ACATATAC---TTTTATT-TACTT-AAATTGTTTACAGTT--TC-TCATAATTA---CAAA-GACAATTTACAT---A-TAT-----
gi|29 : tgactcgaacaga-AAC-AAC-----AC--ATA--CACAACA---T------TTGACATAGCTTTCGTGAGAGTGATCTAATAATTCATTAATCTAAAATAAAGATCGGAgtgccgcatagttccgatctaaac
gi|3 : tctcataaacagtcaATATACATAGACATATTTTATT-GACTT-AAACT--TTACAGTT--TC-TCATCATTA---TACA-TACAACTGACC----A-TAT-----TT-TT-GCACAT-------GACAT--------AT--ATGA-GCATTA---TAAACATTA--AAT-TTTGCAAAAGTATAAA-ATG---TT--TA-GTA------T-------A--AA---GAC--GTGTCT---GTTAA-AC-A---------A-ACT------------A-TA-TTA-AGTAACA-A----------AA-AACATA---TGATTTACCCATAC--AATATTAGTAT-TTTACCC-----ACCCAAT-TA--TAATAAA--GTA-ATTCA-GCT--TAT---TTA----TT-AAC-AAC-----AC--ATA--CATAACA---T------TTGACATAACTTTCGTGAGAATGTACTATTAATTCATTAATTTAACATAAAGTTCGGAATAGttggtgcg
gi|30 : GGCATTGACATATTTTATT-GATTT-GAACT--TAACAGTT--TC-CTGTTATTA---TACA-TACGAATGACA----ATTATTTTAGTT-TT-ATACAT-------GACg
gi|31 : cAGACATGGCCATATTTTATT-GGATG-AAATT--TAACAGAT--GT-TCATCATTATCCTACA-CACTATTGGCA----A-TAT-----TA-TT-ATATGT-------GA
gi|33 : ataACATAGATATAGACATATCTTATTAGACTG-AA--------CAGTT--TC-TCATCATTA---TACA-TACAATTGACA----C-TAT-----TT-TT-t
gi|37 : gACATAGACATAGACGTATTTTACT-GACTTTAAACT--TTTCAGTT--TT-TCATCATGA---TACA-TACAATtaatattatatg
gi|38 : CATAGACATAGACGTATTTTATT-GACTTTAAACT--TTTCAGTT--TT-TCATCATGA---TACA-TACAAT
gi|39 : TTCAGTGATAATGTACTATTGATTCATTAATCTAAAATATAGTTCGGAACAGAG
gi|4 : ttTAGACATAAACATATTTTATT-GACTA-AAACT--TTACAGTT--TC-TCATCATTA---TATA-TACTATTGACA----A-TAG-----TT-TT-GCACAT-------GACAG--------AT--ATAA-GCATTA---TAAACATTG--AAT-TTTGCAAGAGTATAAA-ATG---TT--TA-GTA------TA------A--TA---TAC--GTGTTT---GTTAA-AC-A---------A-AAT------------A-TA-TTA-AGTAACA-A----------AA-AA-ATA---TGATTTACCCATAT--AATCTTAGTAT-TTTACCC-----ACCAAAT-TA--TAATAAA--GTT-ATTCA-GCT--TAT---TTA----TT-AAC-AAC-----AC--ATA--CATAACA---T------TTGACATAACTTTCGTGAGAATATACTATTAATTCATTAATTTAATATTAAGTTCGGAATAG
gi|5 : GACATATTTTAAT-GACTT-AAACT--TTACAGTT--TC-TCATCATTA---TACA-TACAATTGACA----A-TAT-----TT-TT-GCTCAT-------GACAG--------AT--ATAA-GCATTA---TAAACATTA--AAT-TTTGAAAAAGTATAAA-ATG---TT--TA-GTACATGTAT-------A--TA---GAC--GTGTCT---GTTAA-AC-A---------A-AAT------------A-TA-TTA-AGTAACC-A----------AA-AACATA---TGTTTTACCCATAT--AATCTTAGTAT-TTTACCC-----ACCAAAT-TA--TACTAAA--TTT-ATTCA-GTT--TAT---TTA----TT-AAC-ACC-----AC--AAA--CATAACT---T------TTGGCATAACTTTCATGAGAATGTACTATTAAATCATTGATTTAAAAAAAAGTTCATAATAGA
gi|6 : TTTATT-GACTT-AAACT--TTACAGTT--TC-TCATCATTA---AACA-TATAATTGACA----A-TAT-----TT-TT-GCACAT-------GACAG--------AT--ATAA-GCATTA---TAAACATTA--AAT-TTTGCAAAAGTATAAA-ATG---TT--TA-GTA------T-------G--TA---GAC--GTGTCT---GTTAA-AC-A---------A-AAC------------A-TA-TTA-AGTAACA-A----------AA--ACATA---TGATTTACCCATAT--AATCTTAGTAT-TTTACCC-----ACCCAAT-TA--TAATAAA--GTA-ATTCA-GCT--TAT---TTA----TT-AAC-AAC-----AC--ATA--CATAACA---T------TTGACATAGCTTTCGTGAGAATGTACTATTAATTCATTAATTTAAAATAAAGTTCGGAATAGAG
gi|7 : AGACATAGACATATTTTATT-AACTT-AAACT--TTACAGTT--TC-TCATCATTT---GACA-TACACTTGACA----A-TAT-----GT-TT-GCACAT-------GACAG--------AT--ATAA-GCATTA---TAAATATTA--AAT-ACTGAAAAAGTATAAA-ATG---TT---A-GTA------T-------G--TA---GAC--GT--------------------------------------------------A-AGTAACA-A----------AA-AACATA---TGATTTACCCATAT--AGTCTGAGTAT-TTTATCC-----AATTAAT-TA--TAATAAA---TATATTCA-GCT--TTT---TT-----TT-AAC-AAC-----AC--AAA--CATAACA---A------TTGACATAACTTGCTTGAGAATGTCCTATTAGTTCATTAATTTAAAATAAAGTTCGGAATAGAG
gi|8 : TAGACATAGACATATTTAATT-GACTT-AAACC--TTACAGT-----------ATT----------------------------T-----TT--T-GTACAT-------GGCAC--------AT--ATAA-GCATTA---GGGACATTA--A-------CAAAGGTA---------------TA-GTA------T-------A--TG---CTG--GTCTCT---CTTGA-AT-ATGACATGGTA-AGTTTA---------A-TA-TTA-CGTAACA-A----------AA-AGCA-A---TGTTTTACCCACAT--ACTCTGAGTAT-ATT---------ACTCAAT-CA--T---------TA-ACT---GAT--TAT---TTATTATTT-AAC-AAC-----AC--ATT--TGTAACATATT------TTCACATAGCTTTAGTTAGTATGCACTATTGTTTCATTAATCAACATTAAAGTTCGGAAT
gi|9 : ACATAGAAATATCGATATGTTATT-GACTT-ACACT----ATATTT--TC-TCATAATTA---TACA-CACACTTGACA----A-TAT-----AT-TT-GTATAT-------GACAG--------AT--ATAA-CTATTA---AGAATA---------TTTGCAAAAGTACAA----------------TA------T-------A--TA---ATT--ATCTCT---CTTGA-AC-T---------T-AAC------------A-TC-GTG-A-TGATATC----------AT-GATATAGT-TGATTT---CATATCAAA---TAACATATTTACCCGTTTTACCCAAT-TA--ctaaa
blockSeqs : A T GT AG T TCC T CGTT T TTTAG A A CCCTCGT CACTATAT AC T CCC TTAGGAGCA T T ATA TGG C CATGTA TCAAATC CT ATT TA G CTC C T TGACATGGTA TTGCTGAGATTC G C C G T CCGGCATTCC GG TTT CA T A GTTTT G AC TCG AT A AT AAA TTAT T T TTGCT TG AA TATCAGT
blockSeqs : . T . . T . . T . . . . . TGC . . . TTAAAT C . . T . . A . . TT A . . . TGATA TAAGTTTC . . . A . . A GT . G . . . . G A . . . . T . . . . TATT
blockSeqs : . . . . . . . . . . . . . . . . . TTAAAT C . . T . . . . . . A . . . AC TTA . . . A . . T . . T . . . . T A . . . . C . . . . TACA
blockSeqs : . . . . . . . . . . . . . . . . . TTAAAT A . . A . . . . . . A . . . A . . . . A . . A . . T . . . . T A . . . . . . . . . TATT
blockSeqs : . . . . . . . . . . . . . . . . . TTAAAT A . . T . . . . . . G . . . A . . . . C . . T . . G . . . . T A . . . . . . . . . TATT
blockSeqs : . . . . . . . . . . . . . . . . . TTGAAT A . . C . . . . . . A . . . A . . . . G . . A . . T . . . . A A . . . . . . . . . TT
blockSeqs : . . . . . . . . . . . . . . . . . TTAAAT A . . T . . . . . . G . . . A . . . . C . . T . . G . . . . G T . . . . . . . . . TT
blockSeqs : . . . . . . . . . . . . . . . . . TTAAAT C . . A . . . . . . G . . . T . . . . A . . T . . T . . . . G A . . . . . . . . . T
blockSeqs : . . . . . . . . . . . . . . . . . TTAAAT T . . A . . . . . . T . . . A . . . . G . . A . . T . . . . T T . . . . . . . . . T
blockSeqs : . . . . . . . . . . . . . . . . . TTAA C . . T . . . . . . G . . . T . . . . G . . T . . T . . . . G T . . . . . . . . . T
blockSeqs : . . . . . . . . . . . . . . . . . TT C . . T . . . . . . A . . . A . . . . G . . A . . T . . . . . A . . . . . . . . . T
blockSeqs : . . . . . . . . . . . . . . . . . TT A . . T . . . . . . A . . . A . . . . G . . A . . G . . . . . A . . . . . . . . . T
blockSeqs : . . . . . . . . . . . . . . . . . . C . . T . . . . . . G . . . A . . . . G . . A . . G . . . . . . . . . . . . . . . T
blockSeqs : . . . . . . . . . . . . . . . . . . A . . T . . . . . . G . . . A . . . . G . . A . . T . . . . . . . . . . . . . . . T
blockSeqs : . . . . . . . . . . . . . . . . . . C . . . . . . . . . G . . . T . . . . G . . A . . . . . . . . . . . . . . A
blockSeqs : . . . . . . . . . . . . . . . . . . C . . . . . . . . . G . . . . . . . . G . . A . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . C . . . . . . . . . . . T .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . C . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . .
blockSeqCons :
originalCons : ACATAGACATAGACATATTTTATT-GACTT-AAACT--TTACAGTT--TC-TCATCATTA---TACA-TACAATTGACA----A-TAT-----TT-TT-GCACAT-------GACAG--------AT--ATAA-GCATTA---TAAACATTA--AAT-TTTGCAAAAGTATAAA-ATG---TT--TA-GTA------T-------A--TA---GAC--GTGTCT---GTTAA-AC-A---------A-AAT------------A-TA-TTA-AGTAACA-A----------AA-AACATA---TGATTTACCCATAT--AATCTTAGTAT-TTTACCC-----ACCCAAT-TA--TAATAAA--GTA-ATTCA-GCT--TAT---TTA----TT-AAC-AAC-----AC--ATA--CATAACA---T------TTGACATAGCTTCCGTGAGAATGTACTATTAATTCATTAATCTAAAATAAAGTTCGGAATAGAGC
finalCons : ACATAGACATAGACATATTTTATT-GACTT-AAACT--TTACAGTT--TC-TCATCATTA---TACA-TACAATTGACA----A-TAT-----TT-TT-GCACAT-------GACAG--------AT--ATAA-GCATTA---TAAACATTA--AAT-TTTGCAAAAGTATAAA-ATG---TT--TA-GTA------T-------A--TA---GAC--GTGTCT---GTTAA-AC-A---------A-AAT------------A-TA-TTA-AGTAACA-A----------AA-AACATA---TGATTTACCCATAT--AATCTTAGTAT-TTTACCC-----ACCCAAT-TA--TAATAAA--GTA-ATTCA-GCT--TAT---TTA----TT-AAC-AAC-----AC--ATA--CATAACA---T------TTGACATAGCTTCCGTGAGAATGTACTATTAATTCATTAATCTAAAATAAAGTTCGGAATAGAGC
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TCAAATTTCTAAAGCTTCCGATATATATTTGCTAAGTTTAACAAGTTTTGTTCGAAGACTGTAGCAACAATTGGATCATGCTTGAACTTCTAATATAGTATTGTTTTTAATATTATTAAACTTATTTCTAATATCGTTAAACACAGAACACACTAAATAAAATTAAATTAATCTTCAATATCGTTAGTGTGACACAT
Unaligned ( gi|23 ): ATCAAAGATTCTGATACATTATTAGTTTAGTCATTCCACTTTTGATCGAAGAGTGTGGTAACGGTGAGACGTAACCATACTTGGTTTTCTAATATAGTACATGTATGTTTTATAAATTTATTTCTGATAT
Unaligned ( gi|27 ): CTAATTTTAAAAACTTCCGATGTATATTTGATAAGGTTAGCTAAAAGTTAAATTGTGTTTGTAGAAGTGGGAAAAATTAAACTTTCATACTTGGTATTTTAATATGGTA
Unaligned ( gi|32 ): CTTTCAGTCATAAATAAAGCTATGTTTTATTTTTACTTAGTTAAGTAAGTTCAGTTTTGTTCGATGATTGTCGTAATCATACTTG
Unaligned ( gi|34 ): TGATTATTAAATCAAATCAGTTACTGCAGTCTCTTACATCAAATGTAAGAATATAATATTGCTATATAAAGATTGGAATGGAGC
Unaligned ( gi|35 ): GTCTAATTGCGGAACAATCCGTTATATTACATTGGCTTAGCAAGTTAAATTTTACATTGGTTTCATAGTTTGTAAAAT
Unaligned ( gi|36 ): GTCGAATTTATAAAGCTTCCGATATATATTTGCTAAGTTCAGTTTTATTCTACAAACTATTGTAATAA
Unaligned ( gi|40 ): GTCTAATTTTTAAAGCTTCCGCTAAGTTTAGCAGT
Alignments
lowQualScore : 11111111 111111111 11111111111 222222222222 111 2222222222
lowQualScore : 1 3 22 22 3 222 1 5555 1 44444 1 1 5555555 00000000 22 2 333 666666666 1 2 333 333 2 555555 8888888 22 333 55 1 333 2 2 33333333333 111111111111 2 2 2 2 2 9999999999 22 666 33 1 2 0 66666 2 33 111 33 2 33 444 5555 7 2 55555 33 0 33 1111111111 00
lowQualScore : . . .. .. . ... . .... . ..... . . ....... ........ .. . ... ......... . . ... ... . ...... ....... .. ... .. . ... . . ........... ............ . . . . . .......... .. ... .. . . . ..... . .. ... .. . .. ... .... . . ..... .. . .. .......... ..
lowQualScore : 7 3 33 22 2 888 6 2222 7 22222 7 7 9999999 88888888 88 1 999 888888888 5 2 999 222 2 888888 5555555 88 555 55 0 555 2 2 88888888888 000000000000 0 0 0 0 1 2222222222 77 999 44 6 5 1 22222 5 44 444 77 7 77 444 3333 1 4 99999 22 2 22 9999999999 88
consensus : ACATAGACATAGACATATTTTATT-GACTT-AAACT--TTACAGTT--TC-TCATCATTA---TACA-TACAATTGACA----A-TAT-----TT-TT-GCACAT-------GACAG--------AT--ATAA-GCATTA---TAAACATTA--AAT-TTTGCAAAAGTATAAA-ATG---TT--TA-GTA------T-------A--TA---GAC--GTGTCT---GTTAA-AC-A---------A-AAT------------A-TA-TTA-AGTAACA-A----------AA-AACATA---TGATTTACCCATAT--AATCTTAGTAT-TTTACCC-----ACCCAAT-TA--TAATAAA--GTA-ATTCA-GCT--TAT---TTA----TT-AAC-AAC-----AC--ATA--CATAACA---T------TTGACATAGCTTCCGTGAGAATGTACTATTAATTCATTAATCTAAAATAAAGTTCGGAATAGAGC
Reference ( family-2538 ) : ACATAGACATAGACATATTTTATT-GACTT-AAACT--TTACAGTT--TC-TCATCATTA---TACA-TACAATTGACA----A-TAT-----TT-TT-GCACAT-------GACAG--------AT--ATAA-GCATTA---TAAACATTA--AAT-TTTGCAAAAGTATAAA-ATG---TT--TA-GTA------T-------A--TA---GAC--GTGTCT---GTTAA-AC-A---------A-AAT------------A-TA-TTA-AGTAACA-A----------AA-AACATA---TGATTTACCCATAT--AATCTTAGTAT-TTTACCC-----ACCCAAT-TA--TAATAAA--GTA-ATTCA-GCT--TAT---TTA----TT-AAC-AAC-----AC--ATA--CATAACA---T------TTGACATAGCTTCCGTGAGAATGTACTATTAATTCATTAATCTAAAATAAAGTTCGGAATAGAGC
gi|1 : ACATAGACATACACATATTTTATT-GACTT-AAACT--TAACAGTT--TC-TCATCATTA---TACA-TACAATTGACA----A-TAT-----TT-TT-GCACAT-------AACAG--------AT--ATAA-GCATTA---TAAACATTA--AAT-TTTGCAAAAGTATAAA-ATG---TT--TA-GTA------T-------A--TA---GAC--GTGTCT---GTTAA-AC-A---------A-AAT------------A-TA-TTA-AGTAACA-A----------AA-AACATA---TGATTTACCCATAT--AATCTTAGTAT-TTTACCC-----GCCCAAT-TA--TAATAAA--GTA-ATTCA-GCT--TAT---TTA----TT-AAC-AAC-----AT--ATA--CATAACA---T------TTGACATAGCTTTCGTGAGAATGTACTATTAATTCATTAATTTAAAATAAAGTTCGGAATAGAGC
gi|10 : ATAGACATAGACATATTTTATT-GACTT-AAACT--TTACAATT--TC-TCATCATTA---TACA-TACAATTGACA----A-CAT-----TT-TT-GCACAT-------GACAG--------AT--ATAA-ACATTA---TAAACATTA--AAT-TTTGTAAAAGTATAAA-ATG---TT--TA-GTA------T-------A--AA---GAC--GTGCTT---GTTAA-AC-A---------A-AAT------------A-TA-TTA-AGTAACA-A----------AA-AACATA---TGATTTACCCATAT--AATCTTAGAAT-TTTACCC-----ACCAAAT-AA--TATTAAA--GTA-ATTCA-GCT--TAT---TTA----TT-TAC-AAC-----AC--ATA--CATAACA---T------TTGACATAACTT
gi|11 : ACATAAACATAGAGTTATTTTATT-GACTA-AAACT--TTAAATTTAGTT-TCATCAGTA---TACA-TACAACTGACA----T-TAT-----TT-TT-GTATAT-------GACAC--------AT--ATAT-GTA-------AAACATT---------TGCAAACGTATA-------------T---TA------T-------A--TA---CGT--GTATTT---CTTTA-AC-ATGAT-----A-AATTAAGTTTC----A-CA-TTA-GATAACA-G----------AT-AGCATA---TGATT-----ATTT--AACCTGATCA--TTTAC----------------A--TAATAA---------------T--TAT----------TT-AAC-AAC-----AC--A-----------------------------------GTGCGAATGTACTACTCATTCATTAATCTTAAATAAAGTTTGGAATAGAGC
gi|12 : gTTTTATT-CACCT-AAACT--TTACAATT--TC-TCATCATTA---CACA-TACAATTGACA----A-AAT-----TT-TT-GCACAT-------AAAAG--------AT--TTAA-GCATTA---TGAA------------TT----AAGTATAAA-ATG---TT--TA-GTA------T-------A--TA---GAC--GTATCT---GTTGA-AC-A---------A-AAT------------A-TA-TCA-AATAACA-A----------AA-AACATA---TAATTTACCCATAT--AATCTTGGTAT-ATTCCCC-----AACCAAT-TA--TAATAAA--TTA-ATTCA-GCT--TAT---TTA----TT-AAC-GAC-----AT--AAA--CATAACAT--T------TTGACATTGCTTCCGTAAGAATGTAATATT
gi|13 : TAAACATAGCCATATTTTATT-GACTT-AAACT--TTACAGTT--T--TCATCATTA---T-TATTACAAATGACA----T-TAA-----TT-TT-GTATAG-------GACAG--------ATACATGATGC-TTACCCTAACCATTAGGAGCATTTGCGAAAGTATGAA-ATG---TA--TA-GTA------T-------A--TAATTAACTATTATTT---ATTTA-AC-A---------A-AAC-----------------------TGACA-T----------AT-AACATATTTTGATTTA
gi|13 : AATGTA--TAGTATA---TA-ATT-A-ACTATTAT---TTA----TTTAAC-AAA-----ACTGACA--TATAACA---TATT---TTGATTTAACTTCAATGAGAACGTTATATTAATTAATTAATATAAAATAAAGTTCGGAATacttcaatgagaacgttatattaattaattaatataaaataaagttcggaatcg
gi|14 : taaacatagccatattttattgacttaaactttacagttttcatcattattattacaaatgacattaattttgtataggacagatacatgatgcttaccctaaccattaggagcatttgcgaaagtatgaA------T-------A--TA---GAC--GTGTCT---GTTAA-AC-A---------A-AAT------------A-TA-TCA-AATAACA-A----------AA-AACATA---TGATTTACCCATAT--AATCTTAGTAT-TTTACCC-----AACCAAT-TA--TAATAAA--TTA-ATTCA-GCT--TAT---TTA----TT-AAC-AAC-----AC--ATA--CATAACA---T------TTGACATAGCTTTCGTGAGATTTTACTATTAATTCATTAATTTAAAATAACGTTTGGAATGGAGcg
gi|16 : ATAGACATAGTTTATT-GACTT-AAACT--TTACAGTT--TC-TCATCATTA---TACC-TACAATTGACA----A-TAT-----AT-TT-GCACAT-------GACAA--------AT--TTAA-GCATTA---TGAATA---------TTTGAAAAAGAATAAA-AGG---TT--TA-GTA------T-------A--TA---GAC--GTATCT---GTTAA-ACTA---------ACAAC------------A-AA-TT--ACCAACA-A----------A
gi|17 : ATAGACATAGACACAGTTTATT-GACTT-AAACT--TTACAGTT--TC-TCATCATTA---TACA-TACAATTGGCA----A-TAT-----TT-TT-GCACAT-------GACAG--------AT--TTAT-GCATTA---TGAACA---------CTTGAAAAAGTATAAA-ATGATATC--TG-GTA------TTCAAATCA--TG---GGC--GCG-GT---GTGGA-AT-------------AAT------------G-TG-TTACAGTAAtagtttcttctcaattattattattatac
gi|18 : ------------A-TA-CTA-ACTAACA-A----------AT-AGTCTA---TGTTTTATCTATAT--ACTCGGACTTT-TTT-CCC-----AATCAAT-TA--TTATAA---TTA-TTTCA------TATAAATTA----TTTAAC-CAC-----AC--ACAAACACAACA---TACA---TTGACGTAGCTTCAGCGAAAATGTACTGTAGATTCATTAATCTAAGATAAAGTT
gi|19 : ------------A-TA-TTA-AATAATA-ACCGGCATTCCAT-AACATA---TGCTTTGTCCAAAT--A--CT-----------CCT-----ACTTAAT-CA----ATAAATCGT---TTCAAGTT--TAT---CAC----TT-AAC-AAC-----AA--ATA--TACAACA---TATCAGTTTAACTTAGTTTCAGTGA-----CACTATGCATTCGTTAGTCTAAAATAAAGTTCGACACAGAGagac
gi|2 : ATAGACATAGAAATATTTTATT-GACTT-AAAAT--TTACAGTT--TC-TCATCATTA---TACA-AACAATTAACA----A-TAT-----TT-T--GCACAT-------TACAG--------AT--ATAA-GCATTA---TAAAGATTA--AAT-TTTGAAAAAGTATAAA-ATG---TT--AA-GTA------T-------A--TA---GAC--GTGTCT---GTTAA-AC-A---------T-AAT------------G-TA-TTA-AGTAACA-A----------AA-AACATA---TGATATATCCATAT--AATCTTAGTAT-TTTACCC-----AACCAAT-TAACCAAAAAA--ATT-ATTTA-GCT--GAT---TAA----TT-AAC-AAC-----AC--ATA--CATAACAT--T------TTGACTTAGCTTCCGTGAGAATGTACTATTAGTTCATGAATTTAAAATAAAGTTCGGAATAGAGC
gi|20 : CAAAGACAT--TTCATT-GACTT-AAACT--TGACAGTT--TC-TCAACAGTA---TACA-TGCAATTGACA----A-TAT-----TT-TT-GTACAT-------CACTG--------AT--ATAA-GCATT
gi|20 : A------T-------A--TA---AGC--ATTTCTCTCGTTAACAT-A---------A-CAT------------AGTACTTG-GGTAACG-A----------AGGAACATT---CGATTTACCTATTT--ACTCTGAGTAG-TTAACCC-----Atctctcgttaacataacatagtacttgggtaacgaaggaacattcgatttacctatttactctgagtagttaaccca
gi|21 : caaagacatttcattgacttaaacttgacagtttctcaacagtatacatgcaattgacaatatttttgtacatcactgAGTT--GC-TCATTATTC---TACA-TACAACTTGCA----A--AT-----CT-TTAGTATAT--------ATAGCACTATATAT--ATAT-GCATGA---GAAACATT---------TGAAAAAGTATCAA-ATG---TA--CA-GCA------T-------G--TA---CTT--GCGTCT---GTTTA-AC-A---------T-AATTTGCTGAGATTCA-TA-TTG-A-TAATA-A----------AT-ACAATA---TGATTT
gi|22 : TAGGCA--GACACATTTTATT-GATTT-AAAC---TTACAGTT--TCTTTGTCGTTA---TACA-CACACTTGACACGTTA-TAT-----TT-GT-ACATTT-------G-CAG--------AT--TTAA-ACATAA---GGAACA---------TTTGCAAAAGTA-AAA---G---TA--TA-G--------T-------A--TA---GACTTGTATCT---G
gi|24 : ACATAGAAATAGACATATTTTATT-GACTT-ATACT--TTACAGTT--TCTTTACCATTA---TACA-TACAATGGACA----C-TCC-----GT-TA-GCACGT-------GACAT--------AT--TTA
gi|25 : T---TTA----TTCAACTAACTTGCTAT--ATA--CAAAACA---TATT---TTGACATAGCTTCAGTGAGAAT-----------TCATTTGTCTAAAATAAAGTTCCAAATAAAGttacatgctacacgacatcagtttcctgtgtaaca
gi|26 : aacaaatattacagtgttcacgcgaatTTAGCA----A-TAC-----TTATT-GAACGTCCCTCGTAACAGTGC-----AC--ATGT-GCATGA---AGAAGATTA--AAT-TTTGTAAAAGTACAGGTATG---TTGGTACGTG------C-------ACTTT---GTC--GTATCC---GTTAagt
gi|28 : ACATATAC---TTTTATT-TACTT-AAATTGTTTACAGTT--TC-TCATAATTA---CAAA-GACAATTTACAT---A-TAT-----
gi|29 : tgactcgaacaga-AAC-AAC-----AC--ATA--CACAACA---T------TTGACATAGCTTTCGTGAGAGTGATCTAATAATTCATTAATCTAAAATAAAGATCGGAgtgccgcatagttccgatctaaac
gi|3 : tctcataaacagtcaATATACATAGACATATTTTATT-GACTT-AAACT--TTACAGTT--TC-TCATCATTA---TACA-TACAACTGACC----A-TAT-----TT-TT-GCACAT-------GACAT--------AT--ATGA-GCATTA---TAAACATTA--AAT-TTTGCAAAAGTATAAA-ATG---TT--TA-GTA------T-------A--AA---GAC--GTGTCT---GTTAA-AC-A---------A-ACT------------A-TA-TTA-AGTAACA-A----------AA-AACATA---TGATTTACCCATAC--AATATTAGTAT-TTTACCC-----ACCCAAT-TA--TAATAAA--GTA-ATTCA-GCT--TAT---TTA----TT-AAC-AAC-----AC--ATA--CATAACA---T------TTGACATAACTTTCGTGAGAATGTACTATTAATTCATTAATTTAACATAAAGTTCGGAATAGttggtgcg
gi|30 : GGCATTGACATATTTTATT-GATTT-GAACT--TAACAGTT--TC-CTGTTATTA---TACA-TACGAATGACA----ATTATTTTAGTT-TT-ATACAT-------GACg
gi|31 : cAGACATGGCCATATTTTATT-GGATG-AAATT--TAACAGAT--GT-TCATCATTATCCTACA-CACTATTGGCA----A-TAT-----TA-TT-ATATGT-------GA
gi|33 : ataACATAGATATAGACATATCTTATTAGACTG-AA--------CAGTT--TC-TCATCATTA---TACA-TACAATTGACA----C-TAT-----TT-TT-t
gi|37 : gACATAGACATAGACGTATTTTACT-GACTTTAAACT--TTTCAGTT--TT-TCATCATGA---TACA-TACAATtaatattatatg
gi|38 : CATAGACATAGACGTATTTTATT-GACTTTAAACT--TTTCAGTT--TT-TCATCATGA---TACA-TACAAT
gi|39 : TTCAGTGATAATGTACTATTGATTCATTAATCTAAAATATAGTTCGGAACAGAG
gi|4 : ttTAGACATAAACATATTTTATT-GACTA-AAACT--TTACAGTT--TC-TCATCATTA---TATA-TACTATTGACA----A-TAG-----TT-TT-GCACAT-------GACAG--------AT--ATAA-GCATTA---TAAACATTG--AAT-TTTGCAAGAGTATAAA-ATG---TT--TA-GTA------TA------A--TA---TAC--GTGTTT---GTTAA-AC-A---------A-AAT------------A-TA-TTA-AGTAACA-A----------AA-AA-ATA---TGATTTACCCATAT--AATCTTAGTAT-TTTACCC-----ACCAAAT-TA--TAATAAA--GTT-ATTCA-GCT--TAT---TTA----TT-AAC-AAC-----AC--ATA--CATAACA---T------TTGACATAACTTTCGTGAGAATATACTATTAATTCATTAATTTAATATTAAGTTCGGAATAG
gi|5 : GACATATTTTAAT-GACTT-AAACT--TTACAGTT--TC-TCATCATTA---TACA-TACAATTGACA----A-TAT-----TT-TT-GCTCAT-------GACAG--------AT--ATAA-GCATTA---TAAACATTA--AAT-TTTGAAAAAGTATAAA-ATG---TT--TA-GTACATGTAT-------A--TA---GAC--GTGTCT---GTTAA-AC-A---------A-AAT------------A-TA-TTA-AGTAACC-A----------AA-AACATA---TGTTTTACCCATAT--AATCTTAGTAT-TTTACCC-----ACCAAAT-TA--TACTAAA--TTT-ATTCA-GTT--TAT---TTA----TT-AAC-ACC-----AC--AAA--CATAACT---T------TTGGCATAACTTTCATGAGAATGTACTATTAAATCATTGATTTAAAAAAAAGTTCATAATAGA
gi|6 : TTTATT-GACTT-AAACT--TTACAGTT--TC-TCATCATTA---AACA-TATAATTGACA----A-TAT-----TT-TT-GCACAT-------GACAG--------AT--ATAA-GCATTA---TAAACATTA--AAT-TTTGCAAAAGTATAAA-ATG---TT--TA-GTA------T-------G--TA---GAC--GTGTCT---GTTAA-AC-A---------A-AAC------------A-TA-TTA-AGTAACA-A----------AA--ACATA---TGATTTACCCATAT--AATCTTAGTAT-TTTACCC-----ACCCAAT-TA--TAATAAA--GTA-ATTCA-GCT--TAT---TTA----TT-AAC-AAC-----AC--ATA--CATAACA---T------TTGACATAGCTTTCGTGAGAATGTACTATTAATTCATTAATTTAAAATAAAGTTCGGAATAGAG
gi|7 : AGACATAGACATATTTTATT-AACTT-AAACT--TTACAGTT--TC-TCATCATTT---GACA-TACACTTGACA----A-TAT-----GT-TT-GCACAT-------GACAG--------AT--ATAA-GCATTA---TAAATATTA--AAT-ACTGAAAAAGTATAAA-ATG---TT---A-GTA------T-------G--TA---GAC--GT--------------------------------------------------A-AGTAACA-A----------AA-AACATA---TGATTTACCCATAT--AGTCTGAGTAT-TTTATCC-----AATTAAT-TA--TAATAAA---TATATTCA-GCT--TTT---TT-----TT-AAC-AAC-----AC--AAA--CATAACA---A------TTGACATAACTTGCTTGAGAATGTCCTATTAGTTCATTAATTTAAAATAAAGTTCGGAATAGAG
gi|8 : TAGACATAGACATATTTAATT-GACTT-AAACC--TTACAGT-----------ATT----------------------------T-----TT--T-GTACAT-------GGCAC--------AT--ATAA-GCATTA---GGGACATTA--A-------CAAAGGTA---------------TA-GTA------T-------A--TG---CTG--GTCTCT---CTTGA-AT-ATGACATGGTA-AGTTTA---------A-TA-TTA-CGTAACA-A----------AA-AGCA-A---TGTTTTACCCACAT--ACTCTGAGTAT-ATT---------ACTCAAT-CA--T---------TA-ACT---GAT--TAT---TTATTATTT-AAC-AAC-----AC--ATT--TGTAACATATT------TTCACATAGCTTTAGTTAGTATGCACTATTGTTTCATTAATCAACATTAAAGTTCGGAAT
gi|9 : ACATAGAAATATCGATATGTTATT-GACTT-ACACT----ATATTT--TC-TCATAATTA---TACA-CACACTTGACA----A-TAT-----AT-TT-GTATAT-------GACAG--------AT--ATAA-CTATTA---AGAATA---------TTTGCAAAAGTACAA----------------TA------T-------A--TA---ATT--ATCTCT---CTTGA-AC-T---------T-AAC------------A-TC-GTG-A-TGATATC----------AT-GATATAGT-TGATTT---CATATCAAA---TAACATATTTACCCGTTTTACCCAAT-TA--ctaaa
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TCAAATTTCTAAAGCTTCCGATATATATTTGCTAAGTTTAACAAGTTTTGTTCGAAGACTGTAGCAACAATTGGATCATGCTTGAACTTCTAATATAGTATTGTTTTTAATATTATTAAACTTATTTCTAATATCGTTAAACACAGAACACACTAAATAAAATTAAATTAATCTTCAATATCGTTAGTGTGACACAT
Unaligned ( gi|23 ): ATCAAAGATTCTGATACATTATTAGTTTAGTCATTCCACTTTTGATCGAAGAGTGTGGTAACGGTGAGACGTAACCATACTTGGTTTTCTAATATAGTACATGTATGTTTTATAAATTTATTTCTGATAT
Unaligned ( gi|27 ): CTAATTTTAAAAACTTCCGATGTATATTTGATAAGGTTAGCTAAAAGTTAAATTGTGTTTGTAGAAGTGGGAAAAATTAAACTTTCATACTTGGTATTTTAATATGGTA
Unaligned ( gi|32 ): CTTTCAGTCATAAATAAAGCTATGTTTTATTTTTACTTAGTTAAGTAAGTTCAGTTTTGTTCGATGATTGTCGTAATCATACTTG
Unaligned ( gi|34 ): TGATTATTAAATCAAATCAGTTACTGCAGTCTCTTACATCAAATGTAAGAATATAATATTGCTATATAAAGATTGGAATGGAGC
Unaligned ( gi|35 ): GTCTAATTGCGGAACAATCCGTTATATTACATTGGCTTAGCAAGTTAAATTTTACATTGGTTTCATAGTTTGTAAAAT
Unaligned ( gi|36 ): GTCGAATTTATAAAGCTTCCGATATATATTTGCTAAGTTCAGTTTTATTCTACAAACTATTGTAATAA
Unaligned ( gi|40 ): GTCTAATTTTTAAAGCTTCCGCTAAGTTTAGCAGT