lowQualScore : 222222222222222222222222222222222222222222222222222222222222222222222222222 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111 111111111111111111
lowQualScore : 22 2222222222 777777777 1 1 1 11 1111 11111 11 11 1 1 111 4444444444 111 1 11 33333333333 33333333333 11111 111 111 1 111111 11 4 1 22222 11 11111111111 11 2 11 2222 888888888888888888888888888888888888888888888888888888888888888888888888888 888888888888888888888888888888888888888888888888888888888888888888888888888888888888 11 1 33 1 1 33 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1 1 1 1 1 4 1 222 666666 111111 1 4 1 22 1 1 22 444444444444444444 1 11 1 4 1 1 1 1 22
lowQualScore : 88 33 5 66 0 3 0 4 777 5 5 4 2 9999999999 000000000 0 6 7 7 99 3 8 22 1 2222 7 6 66666 1 6 00 77 6 0 5 6 0 6 6 99 1 222 3333333333 5 3 3 6 77 2 6 6 111 2 99 7 11111111111 44444444444 6 66666 99 99 3 6 5 1 77 3 111 111 0 5 8 888888 11 0 0 6 6 5 0 8 1 6 00000 00 2 0 66666666666 2 33 0 0 0 22 0 8 8 4444 666666666666666666666666666666666666666666666666666666666666666666666666666 6 6 444444444444444444444444444444444444444444444444444444444444444444444444444444444444 2 99 555 1 22 2 7 5 22 2 4 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 5 6 5 6 5 7 6 5 0 7 555 6 888888 555555 6 7 0 5 33 5 5 11 6 777777777777777777 4 2 0 88 7 0 5 6 7 7 6 5 11 6 6 6 6
lowQualScore : .. .. . .. . . . . ... . . . . .......... ......... . . . . .. . . .. . .... . . ..... . . .. .. . . . . . . . .. . ... .......... . . . . .. . . . ... . .. . ........... ........... . ..... .. .. . . . . .. . ... ... . . . ...... .. . . . . . . . . . ..... .. . . ........... . .. . . . .. . . . .... ........................................................................... . . .................................................................................... . .. ... . .. . . . .. . . ............................................................................................................................... . . . . . . . . . . ... . ...... ...... . . . . .. . . .. . .................. . . . .. . . . . . . . . .. . . . .
lowQualScore : 11 22 0 99 2 4 5 4 888 6 0 0 1 8888888888 222222222 0 0 0 0 22 5 3 88 0 7777 5 7 77777 0 7 33 55 3 8 5 7 7 7 0 22 0 222 3333333333 7 0 5 0 77 2 7 7 777 7 33 5 77777777777 77777777777 7 77777 88 22 7 7 0 0 77 5 777 777 0 6 0 222222 00 6 0 0 0 0 8 0 4 0 88888 88 8 8 66666666666 2 88 8 8 4 66 8 0 0 0000 000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 000000000000000000000000000000000000000000000000000000000000000000000000000000000000 5 55 000 5 00 5 0 5 00 5 0 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 0 0 0 0 0 0 0 0 0 0 000 0 000000 000000 0 0 0 0 00 0 0 00 0 555555555555555555 0 5 5 55 0 0 0 0 0 0 0 0 00 0 0 0 0
consensus : AAAAT-CACACGCATTTGTTA-CTGT--TTTGAATCGAATAATTNTATTTGTTTAAAGG-TTATTAATCAT---TTGAAAACGCGTGTCTTTGTTT-AAACATAGGNTGA--AC-TGG-AAAAAAAC--C----CACT-GGAGTGTTATTTTACTCTTAAAACGTA--CACTTATGACAATAGAAAA-NAGACGT---GTTATTAACCGCTATAATAGAA-----GGAAAATCACCAACAGTGAATCGCGGTTAAACA-CA-NTTTTT-ACTAAATTAATAACTNTTA-TTTTAGTGAAA-CATACACCGATCGAAAGCTGAA--CTATTACCTGATCGAGTGATGT-------TAACAT-ATTAATANAAACTGGCGTAACTACGGAGAATTAAGCATTTATTC-ACGGGCATTCCTTCGCA-AAA-CGGCGAAAAATACCCAC---AACCATTTCA-TACAGTATTGTAGTAGCTAGTGAAATCGCTGATT-----------AAACAACATGAATGATAAACGTAT---------AATTAGATT-AGT-----AAAGTAT-AAAAATAAAAGAAAACAGCGTT--ATTAACTTTAGTAAAATAGAAAAAT-TAGATGTTGAATAACATA-GATATAA---AAACATGATGAACA---ACATATCATTTATGTAAATTACAAAATAGGCTTCATCTTTTATTAAA-AATGTAA---ACTACACAAATC--AAGTTATAATTGAAACAATGACCGATCGGTGGGCCGTGTTCTT-ACAAAATCAAAAG-AAAATTTAAT-AATTTGTAAATGCGAATAA-ATTAAGAAAAATAAGCATTAATTTAAGGCAATATGCGGTTGCATATCACGCGTCACGGAAACGAGAATTAGCCGTGGCGCTTATAATATCAATCACTACTTCTAAGTCAGTTAAATAACTT-TATACTCGTTAC-AGCATACTGCTACGT-TTTCCATTCATTCATTCATTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT--------------TTTTTATGTTCATTAACAGTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTGTATTTACCGGATANTTTTATTCCTNTACTNCGTGNACACTATAAAACTTCCTTTTATTTAAGTGTTCTGGCACCAGGNTTAAACTTAGAAACGTTTCTTATCAAAATAAAGTTGCATGTAACAATGTTTNTTGCAANTTGTTATTTCCATTCCGTATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTATTGTGTGCGAGGTATAACATTCTTAGTTTGAACAGGTGAACATATCCATAATATATGTTTACATTTTATTAAATGACATATTACTATTTATGACGNNTGTGC-TGTCAGAATTAGAAAATTGAATTGATCTGAAGTGAA--TAT-ATAGTAGTCATATTCAT------ATAATAATTGGGATATTTT-CTTTAATATGTTTATGAATTAATCATTGTATTGATGCAACAAGGGGTTTTTGTCCACGTGTACATTTTTTGACCAAGGAGCTTTTGTCCANGGNGCNTTTGTCCGGATACCTTCTCTACTATCCCTATTTCGTTACTCAATTTTCTCCTCTTTGTTATCATTTTTTTTTACTGTTCTGTTATTTTGTACTCTTCATCCATTTCCAAATTTAGCTCTCTCTCTTATCTTAAACTCCGC
Reference ( gi|1 ) : AAAAC-CACACGCATTTAGTA-CTGT--TTTGAATCGAATAATTCTATTTGTTTAAAGG-TTATTAATCAT---TTGAAAACGCATGTCTTTGTTT-AAGCATAGGTTGA--AT-TGG-AAAAAAACAAC--AACACT-GGAGTGCTATTTTACTCATATAACGTA--CACTTATGACAATTGAAAA-AAGACGT---ATTGTTAACCGCTATAAGAGAA-----GGAAAATCACCAACAGTGAATCACGGTTAAACA-CA-TTTTTA-ACTATATTTATAACTTTTA-TTTCAGTGAAA-CATACATCGATCGAAAGCTGAA--CTATTATCTGAGCAAGTGA-GT-------TAACAT-ATTAATAGAAACTGACGTAACTACGGAGAGTTAAGCATTTATTC-ACGGGCACTCCTTCGCA-AAA-CGGCGAAAAATACCCAC---AACCAATTCA-AACAGTATTGTAGTAGCTAGTGAAATCGCTGGTT-----------AAACAACATGAATGATAAACGTTT---------AATTAGATT-AGT-----AAAGTAT-AAAAATAAAAGAAAACAGCGTT--ATTAACTTTAGTAAAATAGAAAAAT-TAAATGTTAAATAACATA-AATATAA---AAACATGATGAACA---ACATATCATTTATGTCAATTACAAAATAGGCTTCATCTTTTATTAAA-AATGAAA---ACTACACAAATC--AAGTTATAATT-AAACAGTGGCCGATCGGTGGGCCGTGTTCTT-ACAAAATCAAAAG-AAAATTTAAA-AATTTGTAAATGCGAATAA-GTCAAGAAAAATAAGCATTAATTTAAGGCAATATGCGGTTGCATATCACGCGTCACGGAAACAAGAATTAGCCGTAACGCTTATAATATCAATCACTACTTCTAAGTCAGTTAAATAACTT-CATACTCGTTAC-AGCATACTGCTACAT-TTTCCATTCATTCATTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCGCTCGCTCATTTATTTATCCTTGTCACTAATATATTTTTTTATATTTATTAACAGTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAATTGTATTTACCAGATAGTTTTATTCCTTTACTATGTGTATACTATAAAACTTCCTTTTATTTAAGTATTCTGAATCCAGGCTTAAACTTTGAAACATTTCTTATCAAAATAAAGTTGCATGGTATAATGTTTCTTGCAATTTATTATTTCCATTCCGTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTATTGTGTGCGAGGTATCACATTCTTAGTCTGAACAGGTGAACATATCAATGATATCTGTTTACATTTTATTATATAACATATTACTATTGATGACGAGTGTGCGTGTCAGAATAAGATATTTGAATTGATCCGAAGTGAAAATATTATAGTAGTCATATTCATGTACATATAATGATTGGGATTTTTTTCTTTAAGATGTTTATGAATTGTTCATTGTATTGATTCACCAAGTAGCTTTTGTCCACGTGTACA------------------TTTGTCCAAGGGGCGTTTGTCCGGATACCTTCTCTACTATCCCTTTTTC-TTACTCCATTTTCTCCTCTTTGTTATCATTTTTCTTTACAGTTCTGATATTCTTTACTCTTTCTCCATTTCCAAATTTAACTTTCTCTCTTATCTCAAATTCCGC
gi|3 : AAAAT-CACACGCATTTGTTA-CTGT--TTT-AATCGAATAATTCTATTTGTTAAAAGG-TTATTAATCAT---TTGAAAATGCGTGTCTTTGT
gi|5 : AAAAT-CACACGTAATT-GTA-GTGTAGTC---ATTGACTAATTGTATTTGTTTAAATG---ATTAATTATATTTTAAAAAAATAC-TATTTATTA-AAA---AGGC---------------AAAGCAGCCCGTCAC-----GTGTTCTTTAACTGTTAAAACATATACACTTAAGCTTATTAATAATAAGA------ATTATTAACCGC----ACAGAATGTACGAAAAACCACCAACAGTGAATCGCTGTTCAACACCA-GTTTTG------GTTTATA--TCGTAGTTTTA-TAAAACCATACACAGATCGAGAGCTGAATTCT-TTAT-TGAGTGAATAATGA-------TAACATGACCAAT-TTAACTGACAT-------GATAATTAAGCCTTTATCG-ATTGGCAATTCTTTATACAAA-CGG-------TTTCTATGTAAAACAAT----AGCAATTTTATA-TGG-TACTGTAATCGCTATTT-----------AAACAATATAAAT-----ACATTTTACAAATAAAATTATATTAAGTTTATCAAAGTAT-CAAAATACAAGGAAACA--GTTGGATTAACTTTAGT----TAG-----T---GAT-TTAAACA----A-AACAGAACTTAAACAT-ATGCGCATTTTTACATTATCTATGTAAATTACAAAATGTGCATCATC-----TTAAATAATGATATTTTCCACATAAATTAAAAGTTATAATTGAAACAACGACATGTCGG-AATCCATATTTTT-AAGAAATTTAATGTACAGTTC--A-TTTTTCTTAATTAGCATAACGTCAA-AAAAAT--------ATTCAAGGCAATA---------A-ATCACGCGTTACGGAAATTGAAATTTGTCACGCCGCGAATAA-ATCAATTAAT-CTT-TAAATTAATTACAT-ACTTAAATATTCAATAC-AGCATACTGTTATGTATTTTTATTcaccccactggagtgttattttactcttaaaacgtacacttatgacaatagaaaatagacgtgttataaaccgctataatagaaggaaaatcaccaaaagtgaatcacggttaaacacaattttaactaaattaataactgttattttagtgaaacgtacaccgatcgaaatctgaactattacctgatcgagtgacgttaacatattaatatgaactggcgtaactacggagaattaagtatttattcacaagcactccttcgcaaaacggcgaaaaatacccacaaccatttcattacagtattgtagtagctaaagaaatcgctgattaactttttttgaaacaacatgaatgataaacgtatacttagattagtaaagtataaacataaaagagaacagcgttattaactttagtaaaatagaaaatttacatgttgaataacatagagtataaaaacatgatggacaacataccatttatgtaaattgcaaaataggcttcatcttttattaaaaatataaactacacatactaagttatacttgaaacaatgaccgatcggtgggccgtggtcttacaaaatctaaagaaaaatttaataatttgtaaatgcgaataaattaagaaaaataagcattgatttaaggcaatatgcggttgcatatcacgcgtcatggaaacgagaattagccgtggcacttataatatcaatcacaatttctaagtcagttaaatgcttcattctcgttacaacatactgctacat
gi|13 : AAATT-CACACGCATTTGTTA-TTAT--TTTGGATCGATTAATTTCATTTGTTGAAATACTTTTTTATCAT---TTGAAAACGTTTGTTTTTCTTT-AAGCATAGGTTAA--AC-AGGCAAAAAAGC--C----CACT-GGGGTTTTGTTTTACTC
gi|2 : AAAT-CAAACGCATTT-GTAACTGT--TTTGAATCGAATAATTCTATTTGTTTAAAGG-TTATTTATTAT---TTGAAAACGCGTGTCTTTGTTT-AAACATAAATTGA--AC-TTC-CAAAATA------AACACT-GAAGTGTTATTTTACTCTTAAAACGTA--CACTTATGACAATAGAAAA-CAGACGT---GTTATTAACCGCTATAAGAGAA-----GGAAAATCACCAACAGTGAAATGCGGTTAAACA-CAATTTTTT-ACTAGATTAATAACTTTTA-TTTCAGTGAAA-CATACACCGATCGAAAGCTGAA--CTATTATCTGATCGAGTGATGT-------TTACAT-AGTAATAGAAACTAGCGTAACTACGGAGAATTAAGCATTTATTA-ACGGGCATTCCTTCGCA-AAAACGGCGAAAATTACCCAC---AACCATTTCG-TACAGTACTGTAGTAGCTAGTGAAATCGCTGATT-----------AAACAACATGAATGATAAACGTAT---------AATTAGATT-AGT-----AAAGTAT-AAAAATAAAAGAAAACAGCGTT--ATTAACTTAAGTAAAATAGAAAAAAATAGATGTTAAATAACATA-GATATTA---AA-CATGATGAACA---ACATATCATTTATGTCAATTACAAAATAGGCTTCATCTTTTATTAAA-AATGTAA---ACTACGCAAATC--AAGTTATAATTGAAACAATGACCGATCGGTGGGCCGTGTTCTA-ACAAAATCAAAAG-AAAATTTTAT-TATTTGTAAATGCGAATAA-ATTAAGAAAAATAAGCATTAATTTAAGGCAATATGCGGTTGCAAATCACGCGTCACGGAAACAAGAATTAGCCGTGGCGCTTATAATATCAATCACTACTTCTAAGTCAGTTAAATAACTT-TATACTCGTTACTCGCATACTGCTACGT-TTTCCATTT----ATTCATTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT--------------TTTTTATGTTCATTAACAGTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTGTATTTACCGGATAGTTTTATTCCTATACTTTTTGCATACTATAAAACTTCCTTTTATTTAAGTGTTCTGACACCAGGCTTAAACTTAGAAACGTTTCTTATCAAAATAAAGTTGCATGTAATAATGTTTCTTGCAATTTATTATTTCCATTCCG--TATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTATTGTGTGCGAGGTATAACATTCTTAGTTTGAACAGGTGAACATATCCATAATATATGTTTACATTTTATTAAATGACATATTACTATTTATGACGtt
gi|7 : AAAG-CATACGCATTTGTTA-CTGT--TTTGAATCGAATACTTTTATTTGTTTAAAGG-TTATTAATCAT---TTGAAAACGCGTGTCTTTGTTTTAAACATAGGTTGA--AC-TGG-CAAAAAA-AAC----CACT-GGAGCGTTATTTTACTCTTAAAACGTA--CACTTATGACAATAGAAAA-GAGATGT---GTTATAAACCGCTATAATGGAA-----GGAAAATTACCAACAGTGAATCACGGTTAAACA-CA-TTTTTTTACTAAATTCATAACTGTTA-TCTTAGTGAAA-CATACACCGATCGAAAGCTGAA--CTATTACCTGATCGAGTGATGT-------TAACAT-ATTAATATGAACTGGCGTAACTACGGAGAATTAAGCATTTATTTTACGGGCACTCCTTCGCA-AAA-CGGCGAAAAATACCCAC---AACTATTTCA-TACAGTATTGTAGTAGCTAGTTGAATCGCTGATT-----------AAACAACATGAATGATAAAAGTAT---------AATTTAATT-AAT-----AAAGTATAAAAAATAAAAGAAAACAGCGTT--ATTAACTTTTGTAAAATAGAAAATT-TAGATGTTGAATAACATA-GATATAA---AAACATGATGAAAA---ACATAT
gi|15 : AAAT-CATACGCATTTGTTA-CTGT--TTTGAAT-----AATTACATTTGTTTAAAGG-TTATTAATCAT---TTGAAATCGCGTGTCTTCGTTT-AAACATAGAGTGA--ACATGC-AAAAAA-------AACATTGGGAGTGTTATTTTAC
gi|4 : AAC-CACACGCATTTGTTA-CTGT--TTTGAATCGAATAATTCTATTTGTTTAAAGG-TTATTAATCAT---TTGAAAACGCGTGTCTTTGTTT-AAACATAGGATGA--AC-TGG-TAAAAAAC--C----CACT-TGAGTGTTAATTTACTCTTAAAACGTA--CACTTATGACAATAAAAAA-TAGACGT---GTTATTAACCACTTTAAGAGAA-----GGAAAATCACCAACAGTGAATCGCGGTTAAACA-CA-ATTTTT-ACTAAATAAATAACTTTTA-TTTCAGTGAAA-CATACACAAATCGAAAGCTGAA--TTATTACCTGATCGAGTGATGT-------AAACAT-TTTAATAGAAACTGGTGTAACAACGGAGAATTAAGCATTTATTC-ACGGGCATTCGTTCGCA-AAA-CGGCAAAAAATACTCAC---AACCATTTCA-TACAGTAATGTAGTAGCTAGTGAAATCGCTGATT-----------AAACAACATGAATGATAAACGTAA---------AATTAGATT-GGT-----AAAGTAT--AAAATAAAAGAAAACAGCGTT--ATTAACTTTAGTAAAATAGAAAAAT-TAAATGTTGAATAACATA-GATAT-A---AAACATGATGAACA---ACATATCATATATGCAAATTACAAAATAGACTTCATCTTTTATCAAC-AATGTAT---ACTACACAAATC--AAGTTATAATTGAAACAATGACCGATTGGTGGCCCGTGTTCTT-ACAAAATCAAAAC-AAAATTTAAT-AATTTGTAAATGCTAATTA-ATTAAGAAAAATAAGCATTATTTTAAG----------------------GCGTCACTGAAACAAGAATTAGCCGTGGCGCTTATAATACCAATCACTACTTCTAAGTCAGTTAAATAACTT-TATACTCGTTAA-AGCATACTGCTACAT-TTT
gi|14 : AACTCACACGCATTTGTTA-CTGT--TTTGAATCGAATAATTACATTTGTTAAAAGG-TTATTAATAAT---TTGAAATCATGTGTCTTCGTTT-AAACATAGGGTGACCA--TGC-AAAGAAAC--C---CCACTGGGAGTGTTATTTT
gi|10 : G-TTATTTATCAT---TTGAAAACGTGTGTCTTTGTTT-AAACGTAGATTTA--AC-AGGTAAAATAAC
gi|3 : CACT-GGAGTGTTATTTTACTCTTAAAACGTA--CACTTATGACAATAGAAAA-TAGACGT---GTTATAAACCGCTATAATAGAA-----GGAAAATCACCAAAAGTGAATCACGGTTAAACA-CA-ATTTTA-ACTAAATTAATAACTGTTA-TTTTAGTGAAA-CGTACACCGATCGAAATCTGAA--CTATTACCTGATCGAGTGACGT-------TAACAT-ATTAATATGAACTGGCGTAACTACGGAGAATTAAGTATTTATTC-ACAAGCACTCCTTCGCA-AAA-CGGCGAAAAATACCCAC---AACCATTTCATTACAGTATTGTAGTAGCTAAAGAAATCGCTGATTAACTTTTTTTGAAACAACATGAATGATAAACGTAT---------ACTTAGATT-AGT-----AAAGTAT-AAACATAAAAGAGAACAGCGTT--ATTAACTTTAGTAAAATAGAAAATT-TACATGTTGAATAACATAGAGTATAA---AAACATGATGGACA---ACATACCATTTATGTAAATTGCAAAATAGGCTTCATCTTTTATTAAA-AATATAA---ACTACACATACT--AAGTTATACTTGAAACAATGACCGATCGGTGGGCCGTGGTCTT-ACAAAATCTAAAGAAAAATTTAAT-AATTTGTAAATGCGAATAA-ATTAAGAAAAATAAGCATTGATTTAAGGCAATATGCGGTTGCATATCACGCGTCATGGAAACGAGAATTAGCCGTGGCACTTATAATATCAATCACAATTTCTAAGTCAGTTAAAT-GCTT-CATTCTCGTTAC-AACATACTGCTACAT-ccattttactctttaccgctaaaatagaagggaaaacaccaacagtgaatcgcggttaaacacattttttactaaattacttactggtattatagtgaaacaaacaccgatcaaaagctgacctattacctgattgaaggatgttattatataacatatttataaaaactgggg
gi|10 : aaaatcacacgcatttgttactgttttaatcgaataattctatttgttaaaaggttattaatcatttgaaaatgcgtgtctttgtcacccAACGTA--GATTTA--ACAGGTAAAAT-AACCCATTTTACTCTTTACCGCTAAAATAGAA-----GGGAAAACACCAACAGTGAATCGCGGTTAAACA-CA-TTTTTT-ACTAAATTACTTACTGGTA-TTATAGTGAAA-CAAACACCGATCAAAAGCTGAC--CTATTACCTGATTGAAGGATGTTATTATATAACAT-ATTTATAAAAACTG
gi|6 : gttatttatcatttgaaaacgtgtgtctttgtttaTGATGT-------TAACAT-ATTAATAGAAACTGGCGTAACTACGGAGAATTAAGCATTTATTC-ACGGGCATTTCTTCACA-AAA-CGGCGAAACATACCCAC---AACCATTTCA-TACAGTATTGCAGTAGCCAGTGAAATCGGTGATT-----------AAACAACATGAA-GATAAACGTAT---------AATTAGATT-AGT-----AAAGTAT-AAAAATAAAAGAAAAAAGCGTT--ATTAACTTAAGTAAAATAGAAAAAT-TAGATGTTGAATAACATA-GATATAA---AAACATGATGAACA---ACATATCATTTATGTAAATTACAAACAAAGCTTCATCGTTTATCAAA-AATATAA---ACTACACAAATC--AAGTTATACTTGAAACAATGAC----CGGTGGGTCGTGTTCTTAAAAAAATCAAAAG-AAAAACTGAATAATTTGTAAATGCAAATAA-ATTAAGAAAAATAAGCATTAATTTAAGGCAATATGTGGTTGCATATCACGCGTCACGGAAACGAGAATGAGCCGTGGCGCTTATAATATCAATCACTATTTCTAAGTCAGTTAAAT-GCTT-TA-ACTCGTTAC-AGCATACTGCTACAG-TTTCCATTCATTCATTCAggg
gi|11 : ATTGTATTTACCAGATATTTTTATTCCTT-ACTACGTGAACACTATAAAACTTCCTTTTATTTAAGTATTCTGGCACCAGGATTAAATTTAGAAACA-TTCTTATCAAAATAAAGTTGCATGTAACAATGTTTATTGCAAATTGTTATTTCCATTCCGTAttcat
gi|8 : TGTGC-TGTCAGAATTAGAAAATTGAATTGATCTGAAGTGAA--TAT-ATAGTAGTCATATTCAT------ATAATAATTGGGATATTTT-CTTTAATATGTTTATGAATTAATCATTGTATTGATGCAACAAGGGGTTTTTGTCCACGTGTACATTTTTTGACCAAGGAGCTTTTGTCCATGGTGCTTTTGTCCGGATACCTTCTCTACTATCCCTATTTCGTTACTCAATTTTCTCCTCTTTGTTATCATTTTTTTTTACTGTTCTGTTATTTTGTACTCTTCATCCATTTCCAAATTTAGCTCTCTCTCTTATCTTAAACTCCGC
gi|16 : ------------------TTTGTCCAAGAGGCATTTGTCTGGATACC--CTCTACgctctctttctttcgctctctttctctttctgtcttatctcaaactcatctctatctct
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|9 ): GAATTATAATTTTCTTAGTCTAAACAGAGAAACACACAGAACAAATTTGTCTTTTATAAAATGATATATTGATATTTATTGTATGTAGAATAGGCCTCAGAAAATGGTTATGATTTTGAAACTTTGCAATATATGTGTATGTTTATATATGTGCATAAGTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTATTACCATCCATTGTATGACAGTGTTGTTCATTTTTATGCTTAGTGTTCTTTATGTAATA
Unaligned ( gi|12 ): TGGGGGCTTTACTTTTTTTCGTCTAAATAGGCGGACAAACCCTAACATGTTTAATTTCACAAAATGGTATATCAATATTTACTAGATGTAAAAGCATATGAGATGAAACTTTGCTATATATTTATATGTTATAATATGTCA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2222222 1111111 1111111 111 111 1111111 111111 22222222222 111111 11111 111 1111 2 1 55555555555555555555555555555555555555555555555555555555555555555555555555 888888888888888888888888888888888888888888888888888888888888888888888888888888888888 1 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 111 333333 1 1 3333333 1 333333 2 555555555555555555 1
lowQualScore : 66 1 4 777 4 2 8888888 0000000 777 8 77 8888888 5 1 44 000 5 1 5 1 666 1 1 5 5 6666666 5 1 5 1 5 5 666666 5 77777777777 666666 0 5 44444 77 77 1 5 5 5 000 3 6 3 4444 99 2 6 0 3 3 1 7 2 5 77 6 0 6 88888888888888888888888888888888888888888888888888888888888888888888888888 444444444444444444444444444444444444444444444444444444444444444444444444444444444444 0 1 4 11 1 0 0 0 1 0 7 0 1 1 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 7 6 6 22 888 888888 4 7 3 3 6666666 3 7 7 6 888888 0 4 3 4 2 3 2 999999999999999999 1 1 1 7 4 5 3 4 4 2 3
lowQualScore : .. . . ... . . ....... ....... ... . .. ....... . . .. ... . . . . ... . . . . ....... . . . . . . ...... . ........... ...... . . ..... .. .. . . . . ... . . . .... .. . . . . . . . . . .. . . . .......................................................................... .................................................................................... . . . .. . . . . . . . . . . . ............................................................................................................................ . . . . .. ... ...... . . . . ....... . . . . ...... . . . . . . . .................. . . . . . . . . . . .
lowQualScore : 11 0 4 000 0 4 1111111 0000000 000 0 99 6666666 7 7 77 000 7 3 7 0 999 9 0 7 7 2222222 0 0 7 1 7 7 444444 7 11111111111 444444 7 7 33333 11 99 9 7 7 4 000 2 7 5 2222 22 5 7 0 5 2 0 5 2 5 00 7 7 7 55555555555555555555555555555555555555555555555555555555555555555555555555 000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7 0 0 77 0 7 7 7 0 7 3 7 0 0 7 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 0 3 7 7 00 333 333333 7 3 3 3 0000000 3 3 3 7 333333 0 0 0 0 5 0 5 888888888888888888 0 0 0 3 0 0 0 0 0 5 0
consensus : AAAATCACACGCATTTGTTACTGT--TTTGAATCGAATAATTCTATTTGTTTAAA-GGTTATTAATCAT---TTGAAAACGCGTGTCTTTGTTT-AAACATAGGTTGAAC-TG--G-AAAAAAA-C--C--C---ACT-GGAGTGTTATTTTACTCTTAAAACGTA--CACTTA-------TGACAA-TAGAAAANAGACGTGTTA---TTAACCGC-TATAATAGAAGGAAAATCACCAACAGTGAATCGCGGTTAAACA-CANTTTT-T-ACTAAATTAATAACTNTTA-TTTCAGTGAAA-CATACACCGATCGAAAGCTGAACTATTACCTGATCGAGTGATGT-------TAACAT-ATTAATAGAAACTGGCGTAACTACGGAGAATTAAGCATTTA-TTCACGGGCACTCCTTCGCA-AAA-CGG------CGAAAAATACCCACAACCATTTCA-TACAGTATTGTAGTAGCTAGTGAAATCGCTGATT-----------AAACAACATGAATG------ATAAACGTATAATTAGATT-AGT-----AAAGTAT-AAAAATAAAAGAAAACAGCGTT--ATTAACTTTAGTAAAATAGAAAAAT-TAGATGTTGAATAACATAGA-TATAAAAACATGATGAACA---ACATATCATTTATGTAAATTACAAAATAGGCTTCATCTTTTATTAAA-AATGTAAA----CTACACAAATC--AAGTTATAATTGAAACAATGACCGATCGGTGGGCCGTGTTCTT-ACAAAATCAAAAG-AAAATTTAATAATTTGTAAATGCGAATAAATTAAGAAAAATAAGCATTAATTTAAGGCAATATGCGGTTGCATATCACGCGTCACGGAAACGAGAATTAGCCGTGGCGCTTATAATATCAATCACTACTTCTAAGTCAGTTAAATAACTT-TATACTCGTTAC-AGCATACTGCTACGT-TTTCCATTCATTCATTCA--------------TTCATNNNNNNNNNNNNNNNNNCTCGCTCGCTCATTTATTTATCCTTGTCACTAATATATTTTTTTATGTTCATTAACAGTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAATTGTATTTACCGGATAGTTTTATTCCT-TACTACGTGNATACTATAAAACTTCCTTTTATTTAAGTATTCTGACACCAGGCTTAAACTTAGAAACGTTTCTTATCAAAATAAAGTTGCATGTAATAATGTTTCTTGCAATTTATTATTTCCATTCCGTAT-TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTATTGTGTGCGAGGTATAACATTCTTAGTCTGAACAGGTGAACATATCCATAATATATGTTTACATTTTATTAAATGACATATTACTATTTATGACGNGTGTGC-TGTCAGAA------TNAGAAAATTGAAT-TGA-TCCGAAG---TG--AATA-TATAGTAGTCATATT------CATATAATGATTGGGATTNTTTTCTTTAANATGTTTATGAATTGNTCATTGTATTGATNCANCAAGNGGCTTTTGTCCACGTGTACATTTTTTGACCAAGGAGCCTTTGTCCAAGGGGCGTTTGTCCGGATACCTTCTCTACTATCCCTNTTTCGTTACTCNATTTTCTCCTCTTTGTTATCATTTTTCTTTACNGTTCTGNTATTCTNTACTCTTCNTCCATTTCCAAATTTAGCTCTCTCTCTTATCTCAAACTCCGC
Reference ( family-2471 ) : AAAATCACACGCATTTGTTACTGT--TTTGAATCGAATAATTNTATTTGTTTAAA-GGTTATTAATCAT---TTGAAAACGCGTGTCTTTGTTT-AAACATAGGNTGAAC-TG--G-AAAAAAA-C--C--C---ACT-GGAGTGTTATTTTACTCTTAAAACGTA--CACTTA-------TGACAA-TAGAAAANAGACGTGTTA---TTAACCGC-TATAATAGAAGGAAAATCACCAACAGTGAATCGCGGTTAAACA-CANTTTT-T-ACTAAATTAATAACTNTTA-TTTTAGTGAAA-CATACACCGATCGAAAGCTGAACTATTACCTGATCGAGTGATGT-------TAACAT-ATTAATANAAACTGGCGTAACTACGGAGAATTAAGCATTTA-TTCACGGGCATTCCTTCGCA-AAA-CGG------CGAAAAATACCCACAACCATTTCA-TACAGTATTGTAGTAGCTAGTGAAATCGCTGATT-----------AAACAACATGAATG------ATAAACGTATAATTAGATT-AGT-----AAAGTAT-AAAAATAAAAGAAAACAGCGTT--ATTAACTTTAGTAAAATAGAAAAAT-TAGATGTTGAATAACATAGA-TATAAAAACATGATGAACA---ACATATCATTTATGTAAATTACAAAATAGGCTTCATCTTTTATTAAA-AATGTAAA----CTACACAAATC--AAGTTATAATTGAAACAATGACCGATCGGTGGGCCGTGTTCTT-ACAAAATCAAAAG-AAAATTTAATAATTTGTAAATGCGAATAAATTAAGAAAAATAAGCATTAATTTAAGGCAATATGCGGTTGCATATCACGCGTCACGGAAACGAGAATTAGCCGTGGCGCTTATAATATCAATCACTACTTCTAAGTCAGTTAAATAACTT-TATACTCGTTAC-AGCATACTGCTACGT-TTTCCATTCATTCATTCA--------------TTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTATGTTCATTAACAGTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTGTATTTACCGGATANTTTTATTCCTNTACTNCGTGNACACTATAAAACTTCCTTTTATTTAAGTGTTCTGGCACCAGGNTTAAACTTAGAAACGTTTCTTATCAAAATAAAGTTGCATGTAACAATGTTTNTTGCAANTTGTTATTTCCATTCCGTATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTATTGTGTGCGAGGTATAACATTCTTAGTTTGAACAGGTGAACATATCCATAATATATGTTTACATTTTATTAAATGACATATTACTATTTATGACGNNTGTGC-TGTCAGAA------TTAGAAAATTGAAT-TGA-TCTGAAG---TG--AATA-TATAGTAGTCATATT------CATATAATAATTGGGA-TATTTTCTTTAATATGTTTATGAATTAATCATTGTATTGATGCAACAAGGGGTTTTTGTCCACGTGTACATTTTTTGACCAAGGAGCTTTTGTCCANGGNGCNTTTGTCCGGATACCTTCTCTACTATCCCTATTTCGTTACTCAATTTTCTCCTCTTTGTTATCATTTTTTTTTACTGTTCTGTTATTTTGTACTCTTCATCCATTTCCAAATTTAGCTCTCTCTCTTATCTTAAACTCCGC
gi|1 : AAAACCACACGCATTTAGTACTGT--TTTGAATCGAATAATTCTATTTGTTTAAA-GGTTATTAATCAT---TTGAAAACGCATGTCTTTGTTT-AAGCATAGGTTGAAT-TG--G-AAAAAAA-CAACAAC---ACT-GGAGTGCTATTTTACTCATATAACGTA--CACTTA-------TGACAA-TTGAAAAAAGACGTATTG---TTAACCGC-TATAAGAGAAGGAAAATCACCAACAGTGAATCACGGTTAAACA-CATTTTT-A-ACTATATTTATAACTTTTA-TTTCAGTGAAA-CATACATCGATCGAAAGCTGAACTATTATCTGAGCAAGTGA-GT-------TAACAT-ATTAATAGAAACTGACGTAACTACGGAGAGTTAAGCATTTA-TTCACGGGCACTCCTTCGCA-AAA-CGG------CGAAAAATACCCACAACCAATTCA-AACAGTATTGTAGTAGCTAGTGAAATCGCTGGTT-----------AAACAACATGAATG------ATAAACGTTTAATTAGATT-AGT-----AAAGTAT-AAAAATAAAAGAAAACAGCGTT--ATTAACTTTAGTAAAATAGAAAAAT-TAAATGTTAAATAACATAAA-TATAAAAACATGATGAACA---ACATATCATTTATGTCAATTACAAAATAGGCTTCATCTTTTATTAAA-AATGAAAA----CTACACAAATC--AAGTTATAATT-AAACAGTGGCCGATCGGTGGGCCGTGTTCTT-ACAAAATCAAAAG-AAAATTTAAAAATTTGTAAATGCGAATAAGTCAAGAAAAATAAGCATTAATTTAAGGCAATATGCGGTTGCATATCACGCGTCACGGAAACAAGAATTAGCCGTAACGCTTATAATATCAATCACTACTTCTAAGTCAGTTAAATAACTT-CATACTCGTTAC-AGCATACTGCTACAT-TTTCCATTCATTCATTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCGCTCGCTCATTTATTTATCCTTGTCACTAATATATTTTTTTATATTTATTAACAGTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAATTGTATTTACCAGATAGTTTTATTCCTTTACTATGTGTATACTATAAAACTTCCTTTTATTTAAGTATTCTGAATCCAGGCTTAAACTTTGAAACATTTCTTATCAAAATAAAGTTGCATGGTATAATGTTTCTTGCAATTTATTATTTCCATTCCGTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTATTGTGTGCGAGGTATCACATTCTTAGTCTGAACAGGTGAACATATCAATGATATCTGTTTACATTTTATTATATAACATATTACTATTGATGACGAGTGTGCGTGTCAGAA------TAAGATATTTGAAT-TGA-TCCGAAG---TGAAAATATTATAGTAGTCATATTCATGTACATATAATGATTGGGATTTTTTTCTTTAAGATGTTTATGAATTGTTCATTGTATTGATTCACCAAGTAGCTTTTGTCCACGTGTACA------------------TTTGTCCAAGGGGCGTTTGTCCGGATACCTTCTCTACTATCCCTTTTTC-TTACTCCATTTTCTCCTCTTTGTTATCATTTTTCTTTACAGTTCTGATATTCTTTACTCTTTCTCCATTTCCAAATTTAACTTTCTCTCTTATCTCAAATTCCGC
gi|10 : GTTATTTATCAT---TTGAAAACGTGTGTCTTTGTTT-AAACGTAGATTTAAC-AG--GTAAAATAA-C--C--C---------------ATTTTACTCTT
gi|10 : TTTAAACGTA--GATTTA---------ACAGGTA-AAATAACCCATTTTACTCTTTACCGC-TAAAATAGAAGGGAAAACACCAACAGTGAATCGCGGTTAAACA-CATTTTT-T-ACTAAATTACTTACTGGTA-TTATAGTGAAA-CAAACACCGATCAAAAGCTGACCTATTACCTGATTGAAGGATGTTATTATATAACAT-ATTTATAAAAACTGGtaccgctaaaatagaagggaaaacaccaacagtgaatcgcggttaaacacattttttactaaattacttactggtattatagtgaaacaaacaccgatcaaaagctgacctattacctgattgaaggatgttattatataacatatttataaaaactgggg
gi|11 : gttatttatcatttgaaaacgtgtgtctttgATTGTATTTACCAGATATTTTTATTCCT-TACTACGTGAACACTATAAAACTTCCTTTTATTTAAGTATTCTGGCACCAGGATTAAATTTAGAAACATT-CTTATCAAAATAAAGTTGCATGTAACAATGTTTATTGCAAATTGTTATTTCCATTCCGTAgg
gi|13 : AAATTCACACGCATTTGTTATTAT--TTTGGATCGATTAATTTCATTTGTTGAAATACTTTTTTATCAT---TTGAAAACGTTTGTTTTTCTTT-AAGCATAGGTTAAAC-AG--GCAAAAAAG-C--C--C---ACT-GGGGTTTTGTTTTACTCTT
gi|14 : AACTCACACGCATTTGTTACTGT--TTTGAATCGAATAATTACATTTGTTAAAA-GGTTATTAATAAT---TTGAAATCATGTGTCTTCGTTT-AAACATAGGGTGACCATG--C-AAAGAAACC--C--C---ACTGGGAGTGTTATTTT
gi|15 : AAATCATACGCATTTGTTACTGT--TTTGAAT-----AATTACATTTGTTTAAA-GGTTATTAATCAT---TTGAAATCGCGTGTCTTCGTTT-AAACATAGAGTGAACATG--C-AAAAAAA----A--C---ATTGGGAGTGTTATTTTAC
gi|16 : CCTTTGTCCAAGAGGCATTTGTCTGGATACC--CTCTAC
gi|2 : AAATCAAACGCATTTGTAACTGT--TTTGAATCGAATAATTCTATTTGTTTAAA-GGTTATTTATTAT---TTGAAAACGCGTGTCTTTGTTT-AAACATAAATTGAAC-TTCCA-AAATAAA-C---------ACT-GAAGTGTTATTTTACTCTTAAAACGTA--CACTTA-------TGACAA-TAGAAAACAGACGTGTTA---TTAACCGC-TATAAGAGAAGGAAAATCACCAACAGTGAAATGCGGTTAAACA-CAATTTT-TTACTAGATTAATAACTTTTA-TTTCAGTGAAA-CATACACCGATCGAAAGCTGAACTATTATCTGATCGAGTGATGT-------TTACAT-AGTAATAGAAACTAGCGTAACTACGGAGAATTAAGCATTTA-TTAACGGGCATTCCTTCGCA-AAAACGG------CGAAAATTACCCACAACCATTTCG-TACAGTACTGTAGTAGCTAGTGAAATCGCTGATT-----------AAACAACATGAATG------ATAAACGTATAATTAGATT-AGT-----AAAGTAT-AAAAATAAAAGAAAACAGCGTT--ATTAACTTAAGTAAAATAGAAAAAAATAGATGTTAAATAACATAGA-TATTAAA-CATGATGAACA---ACATATCATTTATGTCAATTACAAAATAGGCTTCATCTTTTATTAAA-AATGTAAA----CTACGCAAATC--AAGTTATAATTGAAACAATGACCGATCGGTGGGCCGTGTTCTA-ACAAAATCAAAAG-AAAATTTTATTATTTGTAAATGCGAATAAATTAAGAAAAATAAGCATTAATTTAAGGCAATATGCGGTTGCAAATCACGCGTCACGGAAACAAGAATTAGCCGTGGCGCTTATAATATCAATCACTACTTCTAAGTCAGTTAAATAACTT-TATACTCGTTACTCGCATACTGCTACGT-TTTCCATTTATTCATTCA--------------TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----TTTTTTATGTTCATTAACAGTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTGTATTTACCGGATAGTTTTATTCCTATACTTTTTGCATACTATAAAACTTCCTTTTATTTAAGTGTTCTGACACCAGGCTTAAACTTAGAAACGTTTCTTATCAAAATAAAGTTGCATGTAATAATGTTTCTTGCAATTTATTATTTCCATTCCGTA--TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTATTGTGTGCGAGGTATAACATTCTTAGTTTGAACAGGTGAACATATCCATAATATATGTTTACATTTTATTAAATGACATATTACTATTTATGACG
gi|3 : AAAATCACACGCATTTGTTACTGT--TTT-AATCGAATAATTCTATTTGTTAAAA-GGTTATTAATCAT---TTGAAAATGCGTGTCTTTGTC---------------AC---------------C--C--C---ACT-GGAGTGTTATTTTACTCTTAAAACGTA--CACTTA-------TGACAA-TAGAAAATAGACGTGTTA---TAAACCGC-TATAATAGAAGGAAAATCACCAAAAGTGAATCACGGTTAAACA-CAATTTT-A-ACTAAATTAATAACTGTTA-TTTTAGTGAAA-CGTACACCGATCGAAATCTGAACTATTACCTGATCGAGTGACGT-------TAACAT-ATTAATATGAACTGGCGTAACTACGGAGAATTAAGTATTTA-TTCACAAGCACTCCTTCGCA-AAA-CGG------CGAAAAATACCCACAACCATTTCATTACAGTATTGTAGTAGCTAAAGAAATCGCTGATTAACTTTTTTTGAAACAACATGAATG------ATAAACGTATACTTAGATT-AGT-----AAAGTAT-AAACATAAAAGAGAACAGCGTT--ATTAACTTTAGTAAAATAGAAAATT-TACATGTTGAATAACATAGAGTATAAAAACATGATGGACA---ACATACCATTTATGTAAATTGCAAAATAGGCTTCATCTTTTATTAAA-AATATAAA----CTACACATACT--AAGTTATACTTGAAACAATGACCGATCGGTGGGCCGTGGTCTT-ACAAAATCTAAAGAAAAATTTAATAATTTGTAAATGCGAATAAATTAAGAAAAATAAGCATTGATTTAAGGCAATATGCGGTTGCATATCACGCGTCATGGAAACGAGAATTAGCCGTGGCACTTATAATATCAATCACAATTTCTAAGTCAGTTAAAT-GCTT-CATTCTCGTTAC-AACATACTGCTACAT-
gi|4 : AACCACACGCATTTGTTACTGT--TTTGAATCGAATAATTCTATTTGTTTAAA-GGTTATTAATCAT---TTGAAAACGCGTGTCTTTGTTT-AAACATAGGATGAAC-TG--G-TAAAAAA-C--C--C---ACT-TGAGTGTTAATTTACTCTTAAAACGTA--CACTTA-------TGACAA-TAAAAAATAGACGTGTTA---TTAACCAC-TTTAAGAGAAGGAAAATCACCAACAGTGAATCGCGGTTAAACA-CAATTTT-T-ACTAAATAAATAACTTTTA-TTTCAGTGAAA-CATACACAAATCGAAAGCTGAATTATTACCTGATCGAGTGATGT-------AAACAT-TTTAATAGAAACTGGTGTAACAACGGAGAATTAAGCATTTA-TTCACGGGCATTCGTTCGCA-AAA-CGG------CAAAAAATACTCACAACCATTTCA-TACAGTAATGTAGTAGCTAGTGAAATCGCTGATT-----------AAACAACATGAATG------ATAAACGTAAAATTAGATT-GGT-----AAAGTAT--AAAATAAAAGAAAACAGCGTT--ATTAACTTTAGTAAAATAGAAAAAT-TAAATGTTGAATAACATAGA-TAT-AAAACATGATGAACA---ACATATCATATATGCAAATTACAAAATAGACTTCATCTTTTATCAAC-AATGTATA----CTACACAAATC--AAGTTATAATTGAAACAATGACCGATTGGTGGCCCGTGTTCTT-ACAAAATCAAAAC-AAAATTTAATAATTTGTAAATGCTAATTAATTAAGAAAAATAAGCATTATTTTAAG----------------------GCGTCACTGAAACAAGAATTAGCCGTGGCGCTTATAATACCAATCACTACTTCTAAGTCAGTTAAATAACTT-TATACTCGTTAA-AGCATACTGCTACAT-TTT
gi|5 : AAAATCACACGTAATTGT-AGTGTAGTC---ATTGACTAATTGTATTTGTTTAAA-TG--ATTAATTATATTTTAAAAAAATAC-TATTTATTA-AAA---AGGC------------AAAGCAG-C--C--CGTCAC-----GTGTTCTTTAACTGTTAAAACATATACACTTAAGCTTATTAATAA-TAAGAA---------TTA---TTAACCGCACAGAATGTACGAAAAACCACCAACAGTGAATCGCTGTTCAACACCAGTTTT-------GGTTTATA--TCGTAGTTTTA-TAAAACCATACACAGATCGAGAGCTGAATTCTTTATTGAGTGAATAATGA-------TAACATGACCAAT-TTAACTGACAT-------GATAATTAAGCCTTTA-TCGATTGGCAATTCTTTATACAAA-CGGTTTCTATGTAAAACA---ATAGCAATTTTA-TATGGTACTGT------------AATCGCTATTT-----------AAACAATATAAATACATTTTACAAA--TAAAATTATATTAAGTTTATCAAAGTAT-CAAAATACAAGGAAACA--GTTGGATTAACTTTAGT----TAG-----T---GAT-TTAAACAAAACAGA--ACTTAAACAT-ATGCGCATTTTTACATTATCTATGTAAATTACAAAATGTGCATCATC-----TTAAATAATG-ATATTTTCCACATAAATTAAAAGTTATAATTGAAACAACGACATGTCGG-AATCCATATTTTT-AAGAAATTTAATGTACAGTTCATT--TTTCTTAATTAGCATAACGTCAAAAAAAT--------ATTCAAGGCAATA---------A-ATCACGCGTTACGGAAATTGAAATTTGTCACGCCGCGAATAA-ATCAATTAAT-CTT-TAAATTAATTACAT-ACTTAAATATTCAATAC-AGCATACTGTTATGTATTTTTATT
gi|6 : TGATGT-------TAACAT-ATTAATAGAAACTGGCGTAACTACGGAGAATTAAGCATTTA-TTCACGGGCATTTCTTCACA-AAA-CGG------CGAAACATACCCACAACCATTTCA-TACAGTATTGCAGTAGCCAGTGAAATCGGTGATT-----------AAACAACATGAA-G------ATAAACGTATAATTAGATT-AGT-----AAAGTAT-AAAAATAAAAGAAAAAAGCGTT--ATTAACTTAAGTAAAATAGAAAAAT-TAGATGTTGAATAACATAGA-TATAAAAACATGATGAACA---ACATATCATTTATGTAAATTACAAACAAAGCTTCATCGTTTATCAAA-AATATAAA----CTACACAAATC--AAGTTATACTTGAAACAATGAC----CGGTGGGTCGTGTTCTTAAAAAAATCAAAAGAAAAACTGAATAATTTGTAAATGCAAATAAATTAAGAAAAATAAGCATTAATTTAAGGCAATATGTGGTTGCATATCACGCGTCACGGAAACGAGAATGAGCCGTGGCGCTTATAATATCAATCACTATTTCTAAGTCAGTTAAAT-GCTT-TA-ACTCGTTAC-AGCATACTGCTACAG-TTTCCATTCATTCATTCA--------------TTCAT
gi|7 : AAAGCATACGCATTTGTTACTGT--TTTGAATCGAATACTTTTATTTGTTTAAA-GGTTATTAATCAT---TTGAAAACGCGTGTCTTTGTTTTAAACATAGGTTGAAC-TG--GCAAAAAAA-A--C--C---ACT-GGAGCGTTATTTTACTCTTAAAACGTA--CACTTA-------TGACAA-TAGAAAAGAGATGTGTTA---TAAACCGC-TATAATGGAAGGAAAATTACCAACAGTGAATCACGGTTAAACA-CATTTTTTT-ACTAAATTCATAACTGTTA-TCTTAGTGAAA-CATACACCGATCGAAAGCTGAACTATTACCTGATCGAGTGATGT-------TAACAT-ATTAATATGAACTGGCGTAACTACGGAGAATTAAGCATTTATTTTACGGGCACTCCTTCGCA-AAA-CGG------CGAAAAATACCCACAACTATTTCA-TACAGTATTGTAGTAGCTAGTTGAATCGCTGATT-----------AAACAACATGAATG------ATAAAAGTATAATTTAATT-AAT-----AAAGTATAAAAAATAAAAGAAAACAGCGTT--ATTAACTTTTGTAAAATAGAAAATT-TAGATGTTGAATAACATAGA-TATAAAAACATGATGAAAA---ACATAT
gi|8 : TGTGC-TGTCAGAA------TTAGAAAATTGAAT-TGA-TCTGAAG---TG--AATA-TATAGTAGTCATATT------CATATAATAATTGGGA-TATTTTCTTTAATATGTTTATGAATTAATCATTGTATTGATGCAACAAGGGGTTTTTGTCCACGTGTACATTTTTTGACCAAGGAGCTTTTGTCCATGGTGCTTTTGTCCGGATACCTTCTCTACTATCCCTATTTCGTTACTCAATTTTCTCCTCTTTGTTATCATTTTTTTTTACTGTTCTGTTATTTTGTACTCTTCATCCATTTCCAAATTTAGCTCTCTCTCTTATCTTAAACTCCGC
gi|9 : TATAATTTTCTTAGTCTAAACAGAGAAACACA--CAGAACAAAT--TTGTCTTTTATAAAATGATATATTGATATTTAT--TGTATGT-------AGAATAGGCCTCAGAAAA-TGGTTATGATTTTGAAACTTTGC-AATA-TAT-GT-GT-ATGTT------TATATAgctctctttctttcgctctctttctctttctgtcttatctcaaactcatctctatctct
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TGGGGGCTTTACTTTTTTTCGTCTAAATAGGCGGACAAACCCTAACATGTTTAATTTCACAAAATGGTATATCAATATTTACTAGATGTAAAAGCATATGAGATGAAACTTTGCTATATATTTATATGTTATAATATGTCA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2222222 1111111 1111111 111 11 1111111 111111 22222222222 111111 11111 111 1111 2 1 77777777777777 11111111111111111 8888888888888888888888888888888888888888888888888888888888888888888888888888888888 111 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 111111 22 333333 1 1 3333333 1 333333 11 555555555555555555 1
lowQualScore : 66 1 4 777 4 2 8888888 0000000 777 8 77 8888888 5 1 44 000 5 1 5 1 5 11 1 1 5 5 6666666 5 1 5 0 5 5 666666 5 77777777777 666666 0 5 44444 77 77 1 5 5 5 000 3 6 3 4444 99 2 6 0 3 3 1 7 2 5 77 6 0 6 7 88888888888888 77777777777777777 2222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 777 0 1 88 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 7 6 222222 00 6 888888 1 7 3 3 0 6666666 3 7 7 6 888888 66 1 1 1 1 1 999999999999999999 3 7 1 5 1 1 1 1 1
lowQualScore : .. . . ... . . ....... ....... ... . .. ....... . . .. ... . . . . . .. . . . . ....... . . . . . . ...... . ........... ...... . . ..... .. .. . . . . ... . . . .... .. . . . . . . . . . .. . . . . .............. ................. .................................................................................. . ... . . .. ............................................................................................................................ . . ...... .. . ...... . . . . . ....... . . . . ...... .. . . . . . .................. . . . . . . . . .
lowQualScore : 11 9 4 000 0 3 1111111 0000000 000 0 99 6666666 7 7 77 000 7 3 7 0 7 11 9 0 7 7 2222222 0 4 7 4 7 7 444444 7 11111111111 444444 7 7 33333 11 99 9 7 7 4 000 2 7 5 2222 22 5 7 0 5 2 0 5 2 5 00 7 7 7 3 33333333333333 00000000000000000 0000000000000000000000000000000000000000000000000000000000000000000000000000000000 7 777 7 0 00 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 3 7 888888 00 7 333333 0 3 3 3 7 0000000 3 3 3 7 333333 55 0 0 0 0 0 555555555555555555 7 3 0 0 0 0 0 0 0
consensus : AAAATCACACGCATTTGTTACTGT--TTTGAATCGAATAATTCTATTTGTTTAAA-GGTTATTAATCAT---TTGAAAACGCGTGTCTTTGTTT-AAACATAGGTTGAAC-TG--G-AAAAAAA-C--C--C---ACT-GGAGTGTTATTTTACTCTTAAAACGTA--CACTTA-------TGACAA-TAGAAAANAGACGTGTTA---TTAACCGC-TATAATAGAAGGAAAATCACCAACAGTGAATCGCGGTTAAACAC-ANTTT-TT-ACTAAATTAATAACTNTTA-TTTCAGTGAAAC-ATACACCGATCGAAAGCTGAACTATTACCTGATCGAGTGATGT-------TAACAT-ATTAATAGAAACTGGCGTAACTACGGAGAATTAAGCATTTA-TTCACGGGCACTCCTTCGCA-AAA-CGG------CGAAAAATACCCACAACCATTTCA-TACAGTATTGTAGTAGCTAGTGAAATCGCTGATT-----------AAACAACATGAATG------ATAAACGTATAATTAGATT-AGT-----AAAGTAT-AAAAATAAAAGAAAACAGCGTT--ATTAACTTTAGTAAAATAGAAAAAT-TAGATGTTGAATAACATAGA-TATAAAAACATGATGAACA---ACATATCATTTATGTAAATTACAAAATAGGCTTCATCTTTTATTAAA-AATGTAAA----CTACACAAATC--AAGTTATAATTGAAACAATGACCGATCGGTGGGCCGTGTTCTT-ACAAAATCAAAAG-AAAATTTAATAATTTGTAAATGCGAATAAATTAAGAAAAATAAGCATTAATTTAAGGCAATATGCGGTTGCATATCACGCGTCACGGAAACGAGAATTAGCCGTGGCGCTTATAATATCAATCACTACTTCTAAGTCAGTTAAATAACTT-TATACTCGTTAC-AGCATACTGCTACGT-TTTCCATTCATTCATTCA--------------TTCATNNNNNNNNNNNNNNNNNCTCGCTCGCTCATTTATTTATCCTTGTCACTAATATATTTTTTTATGTTCATTAACAGTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAATTGTATTTACCGGATAGTTTTATTCC-T-TACTACGTGNATACTATAAAACTTCCTTTTATTTAAGTATTCTGACACCAGGCTTAAACTTAGAAACGTTTCTTATCAAAATAAAGTTGCATGTAATAATGTTTCTTGCAATTTATTATTTCCATTCCGTAT-TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTATTGTGTGCGAGGTATAACATTCTTAGTCTGAACAGGTGAACATATCCATAATATATGTTTACATTTTATTAAATGACATATTACTATTTATGACGAGTGTGC-TGTCAGAA------TNAGAAAATTGAAT-TGA-TCCGAAG---TG--AATA-TATAGTAGTCATATT------CATATAATGATTGGGATTNTTTTCTTTAANATGTTTATGAATTGNTCATTGTATTGATNCANCAAGNGGCTTTTGTCCACGTGTACATTTTTTGACCAAGGAGCCTTTGTCCAAGGGGCGTTTGTCCGGATACCTTCTCTACTATCCCTNTTTCGTTACTCNATTTTCTCCTCTTTGTTATCATTTTTCTTTACNGTTCTGNTATTCTNTACTCTTCNTCCATTTCCAAATTTAGCTCTCTCTCTTATCTCAAACTCCGC
Reference ( family-2471 ) : AAAATCACACGCATTTGTTACTGT--TTTGAATCGAATAATTCTATTTGTTTAAA-GGTTATTAATCAT---TTGAAAACGCGTGTCTTTGTTT-AAACATAGGTTGAAC-TG--G-AAAAAAA-C--C--C---ACT-GGAGTGTTATTTTACTCTTAAAACGTA--CACTTA-------TGACAA-TAGAAAANAGACGTGTTA---TTAACCGC-TATAATAGAAGGAAAATCACCAACAGTGAATCGCGGTTAAACAC-ANTTT-TT-ACTAAATTAATAACTNTTA-TTTCAGTGAAAC-ATACACCGATCGAAAGCTGAACTATTACCTGATCGAGTGATGT-------TAACAT-ATTAATAGAAACTGGCGTAACTACGGAGAATTAAGCATTTA-TTCACGGGCACTCCTTCGCA-AAA-CGG------CGAAAAATACCCACAACCATTTCA-TACAGTATTGTAGTAGCTAGTGAAATCGCTGATT-----------AAACAACATGAATG------ATAAACGTATAATTAGATT-AGT-----AAAGTAT-AAAAATAAAAGAAAACAGCGTT--ATTAACTTTAGTAAAATAGAAAAAT-TAGATGTTGAATAACATAGA-TATAAAAACATGATGAACA---ACATATCATTTATGTAAATTACAAAATAGGCTTCATCTTTTATTAAA-AATGTAAA----CTACACAAATC--AAGTTATAATTGAAACAATGACCGATCGGTGGGCCGTGTTCTT-ACAAAATCAAAAG-AAAATTTAATAATTTGTAAATGCGAATAAATTAAGAAAAATAAGCATTAATTTAAGGCAATATGCGGTTGCATATCACGCGTCACGGAAACGAGAATTAGCCGTGGCGCTTATAATATCAATCACTACTTCTAAGTCAGTTAAATAACTT-TATACTCGTTAC-AGCATACTGCTACGT-TTTCCATTCATTCATTCA--------------TTCATNNNNNNNNNNNNNNNNNCTCGCTCGCTCATTTATTTATCCTTGTCACTAATATATTTTTTTATGTTCATTAACAGTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAATTGTATTTACCGGATAGTTTTATTCC-T-TACTACGTGNATACTATAAAACTTCCTTTTATTTAAGTATTCTGACACCAGGCTTAAACTTAGAAACGTTTCTTATCAAAATAAAGTTGCATGTAATAATGTTTCTTGCAATTTATTATTTCCATTCCGTAT-TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTATTGTGTGCGAGGTATAACATTCTTAGTCTGAACAGGTGAACATATCCATAATATATGTTTACATTTTATTAAATGACATATTACTATTTATGACGNGTGTGC-TGTCAGAA------TNAGAAAATTGAAT-TGA-TCCGAAG---TG--AATA-TATAGTAGTCATATT------CATATAATGATTGGGATTNTTTTCTTTAANATGTTTATGAATTGNTCATTGTATTGATNCANCAAGNGGCTTTTGTCCACGTGTACATTTTTTGACCAAGGAGCCTTTGTCCAAGGGGCGTTTGTCCGGATACCTTCTCTACTATCCCTNTTTCGTTACTCNATTTTCTCCTCTTTGTTATCATTTTTCTTTACNGTTCTGNTATTCTNTACTCTTCNTCCATTTCCAAATTTAGCTCTCTCTCTTATCTCAAACTCCGC
gi|1 : AAAACCACACGCATTTAGTACTGT--TTTGAATCGAATAATTCTATTTGTTTAAA-GGTTATTAATCAT---TTGAAAACGCATGTCTTTGTTT-AAGCATAGGTTGAAT-TG--G-AAAAAAA-CAACAAC---ACT-GGAGTGCTATTTTACTCATATAACGTA--CACTTA-------TGACAA-TTGAAAAAAGACGTATTG---TTAACCGC-TATAAGAGAAGGAAAATCACCAACAGTGAATCACGGTTAAACAC-ATTTT-TA-ACTATATTTATAACTTTTA-TTTCAGTGAAAC-ATACATCGATCGAAAGCTGAACTATTATCTGAGCAAGTGA-GT-------TAACAT-ATTAATAGAAACTGACGTAACTACGGAGAGTTAAGCATTTA-TTCACGGGCACTCCTTCGCA-AAA-CGG------CGAAAAATACCCACAACCAATTCA-AACAGTATTGTAGTAGCTAGTGAAATCGCTGGTT-----------AAACAACATGAATG------ATAAACGTTTAATTAGATT-AGT-----AAAGTAT-AAAAATAAAAGAAAACAGCGTT--ATTAACTTTAGTAAAATAGAAAAAT-TAAATGTTAAATAACATAAA-TATAAAAACATGATGAACA---ACATATCATTTATGTCAATTACAAAATAGGCTTCATCTTTTATTAAA-AATGAAAA----CTACACAAATC--AAGTTATAATT-AAACAGTGGCCGATCGGTGGGCCGTGTTCTT-ACAAAATCAAAAG-AAAATTTAAAAATTTGTAAATGCGAATAAGTCAAGAAAAATAAGCATTAATTTAAGGCAATATGCGGTTGCATATCACGCGTCACGGAAACAAGAATTAGCCGTAACGCTTATAATATCAATCACTACTTCTAAGTCAGTTAAATAACTT-CATACTCGTTAC-AGCATACTGCTACAT-TTTCCATTCATTCATTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCGCTCGCTCATTTATTTATCCTTGTCACTAATATATTTTTTTATATTTATTAACAGTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAATTGTATTTACCAGATAGTTTTATTCCTT-TACTATGTGTATACTATAAAACTTCCTTTTATTTAAGTATTCTGAATCCAGGCTTAAACTTTGAAACATTTCTTATCAAAATAAAGTTGCATGGTATAATGTTTCTTGCAATTTATTATTTCCATTCCGTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTATTGTGTGCGAGGTATCACATTCTTAGTCTGAACAGGTGAACATATCAATGATATCTGTTTACATTTTATTATATAACATATTACTATTGATGACGAGTGTGCGTGTCAGAA------TAAGATATTTGAAT-TGA-TCCGAAG---TGAAAATATTATAGTAGTCATATTCATGTACATATAATGATTGGGATTTTTTTCTTTAAGATGTTTATGAATTGTTCATTGTATTGATTCACCAAGTAGCTTTTGTCCACGTGTACA------------------TTTGTCCAAGGGGCGTTTGTCCGGATACCTTCTCTACTATCCCTTTTTC-TTACTCCATTTTCTCCTCTTTGTTATCATTTTTCTTTACAGTTCTGATATTCTTTACTCTTTCTCCATTTCCAAATTTAACTTTCTCTCTTATCTCAAATTCCGC
gi|10 : GTTATTTATCAT---TTGAAAACGTGTGTCTTTGTTT-AAACGTAGATTTAAC-AG--GTAAAATAA-C--C--C---------------ATTTTACTCTT
gi|10 : TTTAAACGTA--GATTTA---------ACAGGTA-AAATAACCCATTTTACTCTTTACCGC-TAAAATAGAAGGGAAAACACCAACAGTGAATCGCGGTTAAACAC-ATTTT-TT-ACTAAATTACTTACTGGTA-TTATAGTGAAAC-AAACACCGATCAAAAGCTGACCTATTACCTGATTGAAGGATGTTATTATATAACAT-ATTTATAAAAACTGGtaccgctaaaatagaagggaaaacaccaacagtgaatcgcggttaaacacattttttactaaattacttactggtattatagtgaaacaaacaccgatcaaaagctgacctattacctgattgaaggatgttattatataacatatttataaaaactgggg
gi|11 : gttatttatcatttgaaaacgtgtgtctttgATTGTATTTACCAGATATTTTTATTCC-T-TACTACGTGAACACTATAAAACTTCCTTTTATTTAAGTATTCTGGCACCAGGATTAAATTTAGAAACA-TTCTTATCAAAATAAAGTTGCATGTAACAATGTTTATTGCAAATTGTTATTTCCATTCCGTAgg
gi|13 : AAATTCACACGCATTTGTTATTAT--TTTGGATCGATTAATTTCATTTGTTGAAATACTTTTTTATCAT---TTGAAAACGTTTGTTTTTCTTT-AAGCATAGGTTAAAC-AG--GCAAAAAAG-C--C--C---ACT-GGGGTTTTGTTTTACTCTT
gi|14 : AACTCACACGCATTTGTTACTGT--TTTGAATCGAATAATTACATTTGTTAAAA-GGTTATTAATAAT---TTGAAATCATGTGTCTTCGTTT-AAACATAGGGTGACCATG--C-AAAGAAACC--C--C---ACTGGGAGTGTTATTTT
gi|15 : AAATCATACGCATTTGTTACTGT--TTTGAAT-----AATTACATTTGTTTAAA-GGTTATTAATCAT---TTGAAATCGCGTGTCTTCGTTT-AAACATAGAGTGAACATG--C-AAAAAAA----A--C---ATTGGGAGTGTTATTTTAC
gi|16 : CCTTTGTCCAAGAGGCATTTGTCTGGATACC--CTCTAC
gi|2 : AAATCAAACGCATTTGTAACTGT--TTTGAATCGAATAATTCTATTTGTTTAAA-GGTTATTTATTAT---TTGAAAACGCGTGTCTTTGTTT-AAACATAAATTGAAC-TTCCA-AAATAAA-C---------ACT-GAAGTGTTATTTTACTCTTAAAACGTA--CACTTA-------TGACAA-TAGAAAACAGACGTGTTA---TTAACCGC-TATAAGAGAAGGAAAATCACCAACAGTGAAATGCGGTTAAACAC-AATTT-TTTACTAGATTAATAACTTTTA-TTTCAGTGAAAC-ATACACCGATCGAAAGCTGAACTATTATCTGATCGAGTGATGT-------TTACAT-AGTAATAGAAACTAGCGTAACTACGGAGAATTAAGCATTTA-TTAACGGGCATTCCTTCGCA-AAAACGG------CGAAAATTACCCACAACCATTTCG-TACAGTACTGTAGTAGCTAGTGAAATCGCTGATT-----------AAACAACATGAATG------ATAAACGTATAATTAGATT-AGT-----AAAGTAT-AAAAATAAAAGAAAACAGCGTT--ATTAACTTAAGTAAAATAGAAAAAAATAGATGTTAAATAACATAGA-TATTAAA-CATGATGAACA---ACATATCATTTATGTCAATTACAAAATAGGCTTCATCTTTTATTAAA-AATGTAAA----CTACGCAAATC--AAGTTATAATTGAAACAATGACCGATCGGTGGGCCGTGTTCTA-ACAAAATCAAAAG-AAAATTTTATTATTTGTAAATGCGAATAAATTAAGAAAAATAAGCATTAATTTAAGGCAATATGCGGTTGCAAATCACGCGTCACGGAAACAAGAATTAGCCGTGGCGCTTATAATATCAATCACTACTTCTAAGTCAGTTAAATAACTT-TATACTCGTTACTCGCATACTGCTACGT-TTTCCATTTATTC----A--------------TTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTATGTTCATTAACAGTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTGTATTTACCGGATAGTTTTATTCC-TATACTTTTTGCATACTATAAAACTTCCTTTTATTTAAGTGTTCTGACACCAGGCTTAAACTTAGAAACGTTTCTTATCAAAATAAAGTTGCATGTAATAATGTTTCTTGCAATTTATTATTTCCATTCCGTA--TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTATTGTGTGCGAGGTATAACATTCTTAGTTTGAACAGGTGAACATATCCATAATATATGTTTACATTTTATTAAATGACATATTACTATTTATGACG
gi|3 : AAAATCACACGCATTTGTTACTGT--TTT-AATCGAATAATTCTATTTGTTAAAA-GGTTATTAATCAT---TTGAAAATGCGTGTCTTTGTC---------------AC---------------C--C--C---ACT-GGAGTGTTATTTTACTCTTAAAACGTA--CACTTA-------TGACAA-TAGAAAATAGACGTGTTA---TAAACCGC-TATAATAGAAGGAAAATCACCAAAAGTGAATCACGGTTAAACAC-AATTT-TA-ACTAAATTAATAACTGTTA-TTTTAGTGAAAC-GTACACCGATCGAAATCTGAACTATTACCTGATCGAGTGACGT-------TAACAT-ATTAATATGAACTGGCGTAACTACGGAGAATTAAGTATTTA-TTCACAAGCACTCCTTCGCA-AAA-CGG------CGAAAAATACCCACAACCATTTCATTACAGTATTGTAGTAGCTAAAGAAATCGCTGATTAACTTTTTTTGAAACAACATGAATG------ATAAACGTATACTTAGATT-AGT-----AAAGTAT-AAACATAAAAGAGAACAGCGTT--ATTAACTTTAGTAAAATAGAAAATT-TACATGTTGAATAACATAGAGTATAAAAACATGATGGACA---ACATACCATTTATGTAAATTGCAAAATAGGCTTCATCTTTTATTAAA-AATATAAA----CTACACATACT--AAGTTATACTTGAAACAATGACCGATCGGTGGGCCGTGGTCTT-ACAAAATCTAAAGAAAAATTTAATAATTTGTAAATGCGAATAAATTAAGAAAAATAAGCATTGATTTAAGGCAATATGCGGTTGCATATCACGCGTCATGGAAACGAGAATTAGCCGTGGCACTTATAATATCAATCACAATTTCTAAGTCAGTTAAAT-GCTT-CATTCTCGTTAC-AACATACTGCTACAT-
gi|4 : AACCACACGCATTTGTTACTGT--TTTGAATCGAATAATTCTATTTGTTTAAA-GGTTATTAATCAT---TTGAAAACGCGTGTCTTTGTTT-AAACATAGGATGAAC-TG--G-TAAAAAA-C--C--C---ACT-TGAGTGTTAATTTACTCTTAAAACGTA--CACTTA-------TGACAA-TAAAAAATAGACGTGTTA---TTAACCAC-TTTAAGAGAAGGAAAATCACCAACAGTGAATCGCGGTTAAACAC-AATTT-TT-ACTAAATAAATAACTTTTA-TTTCAGTGAAAC-ATACACAAATCGAAAGCTGAATTATTACCTGATCGAGTGATGT-------AAACAT-TTTAATAGAAACTGGTGTAACAACGGAGAATTAAGCATTTA-TTCACGGGCATTCGTTCGCA-AAA-CGG------CAAAAAATACTCACAACCATTTCA-TACAGTAATGTAGTAGCTAGTGAAATCGCTGATT-----------AAACAACATGAATG------ATAAACGTAAAATTAGATT-GGT-----AAAGTAT--AAAATAAAAGAAAACAGCGTT--ATTAACTTTAGTAAAATAGAAAAAT-TAAATGTTGAATAACATAGA-TAT-AAAACATGATGAACA---ACATATCATATATGCAAATTACAAAATAGACTTCATCTTTTATCAAC-AATGTATA----CTACACAAATC--AAGTTATAATTGAAACAATGACCGATTGGTGGCCCGTGTTCTT-ACAAAATCAAAAC-AAAATTTAATAATTTGTAAATGCTAATTAATTAAGAAAAATAAGCATTATTTTAAG----------------------GCGTCACTGAAACAAGAATTAGCCGTGGCGCTTATAATACCAATCACTACTTCTAAGTCAGTTAAATAACTT-TATACTCGTTAA-AGCATACTGCTACAT-TTT
gi|5 : AAAATCACACGTAATTGT-AGTGTAGTC---ATTGACTAATTGTATTTGTTTAAA-TG--ATTAATTATATTTTAAAAAAATAC-TATTTATTA-AAA---AGGC------------AAAGCAG-C--C--CGTCAC-----GTGTTCTTTAACTGTTAAAACATATACACTTAAGCTTATTAATAA-TAAGAA---------TTA---TTAACCGCACAGAATGTACGAAAAACCACCAACAGTGAATCGCTGTTCAACACCAGTTT-T------GGTTTATA--TCGTAGTTTTA-TAAAACCATACACAGATCGAGAGCTGAATTCTTTATTGAGTGAATAATGA-------TAACATGACCAAT-TTAACTGACAT-------GATAATTAAGCCTTTA-TCGATTGGCAATTCTTTATACAAA-CGGTTTCTATGTAAAACA---ATAGCAATTTTA-TATGGTACTGT------------AATCGCTATTT-----------AAACAATATAAATACATTTTACAAA--TAAAATTATATTAAGTTTATCAAAGTAT-CAAAATACAAGGAAACA--GTTGGATTAACTTTAGT----TAG-----T---GAT-TTAAACAAAACAGA--ACTTAAACAT-ATGCGCATTTTTACATTATCTATGTAAATTACAAAATGTGCATCATC-----TTAAATAATG-ATATTTTCCACATAAATTAAAAGTTATAATTGAAACAACGACATGTCGG-AATCCATATTTTT-AAGAAATTTAATGTACAGTTCATT--TTTCTTAATTAGCATAACGTCAAAAAAAT--------ATTCAAGGCAATA---------A-ATCACGCGTTACGGAAATTGAAATTTGTCACGCCGCGAATAA-ATCAATTAAT-CTT-TAAATTAATTACAT-ACTTAAATATTCAATAC-AGCATACTGTTATGTATTTTTATT
gi|6 : TGATGT-------TAACAT-ATTAATAGAAACTGGCGTAACTACGGAGAATTAAGCATTTA-TTCACGGGCATTTCTTCACA-AAA-CGG------CGAAACATACCCACAACCATTTCA-TACAGTATTGCAGTAGCCAGTGAAATCGGTGATT-----------AAACAACATGAA-G------ATAAACGTATAATTAGATT-AGT-----AAAGTAT-AAAAATAAAAGAAAAAAGCGTT--ATTAACTTAAGTAAAATAGAAAAAT-TAGATGTTGAATAACATAGA-TATAAAAACATGATGAACA---ACATATCATTTATGTAAATTACAAACAAAGCTTCATCGTTTATCAAA-AATATAAA----CTACACAAATC--AAGTTATACTTGAAACAATGAC----CGGTGGGTCGTGTTCTTAAAAAAATCAAAAGAAAAACTGAATAATTTGTAAATGCAAATAAATTAAGAAAAATAAGCATTAATTTAAGGCAATATGTGGTTGCATATCACGCGTCACGGAAACGAGAATGAGCCGTGGCGCTTATAATATCAATCACTATTTCTAAGTCAGTTAAAT-GCTT-TA-ACTCGTTAC-AGCATACTGCTACAG-TTTCCATTCATTCATTCA--------------TTCAT
gi|7 : AAAGCATACGCATTTGTTACTGT--TTTGAATCGAATACTTTTATTTGTTTAAA-GGTTATTAATCAT---TTGAAAACGCGTGTCTTTGTTTTAAACATAGGTTGAAC-TG--GCAAAAAAA-A--C--C---ACT-GGAGCGTTATTTTACTCTTAAAACGTA--CACTTA-------TGACAA-TAGAAAAGAGATGTGTTA---TAAACCGC-TATAATGGAAGGAAAATTACCAACAGTGAATCACGGTTAAACAC-ATTTTTTT-ACTAAATTCATAACTGTTA-TCTTAGTGAAAC-ATACACCGATCGAAAGCTGAACTATTACCTGATCGAGTGATGT-------TAACAT-ATTAATATGAACTGGCGTAACTACGGAGAATTAAGCATTTATTTTACGGGCACTCCTTCGCA-AAA-CGG------CGAAAAATACCCACAACTATTTCA-TACAGTATTGTAGTAGCTAGTTGAATCGCTGATT-----------AAACAACATGAATG------ATAAAAGTATAATTTAATT-AAT-----AAAGTATAAAAAATAAAAGAAAACAGCGTT--ATTAACTTTTGTAAAATAGAAAATT-TAGATGTTGAATAACATAGA-TATAAAAACATGATGAAAA---ACATAT
gi|8 : TGTGC-TGTCAGAA------TTAGAAAATTGAAT-TGA-TCTGAAG---TG--AATA-TATAGTAGTCATATT------CATATAATAATTGGGAT-ATTTTCTTTAATATGTTTATGAATTAATCATTGTATTGATGCAACAAGGGGTTTTTGTCCACGTGTACATTTTTTGACCAAGGAGCTTTTGTCCATGGTGCTTTTGTCCGGATACCTTCTCTACTATCCCTATTTCGTTACTCAATTTTCTCCTCTTTGTTATCATTTTTTTTTACTGTTCTGTTATTTTGTACTCTTCATCCATTTCCAAATTTAGCTCTCTCTCTTATCTTAAACTCCGC
gi|9 : TATAATTTTCTTAGTCTAAACAGAGAAACACA--CAGAACAAAT--TTGTCTTTTATAAAATGATATATTGATATTTAT------TGTA--TGT-AGAATAGGCCTCAGAAAA-TGGTTATGATTTTGAAACTTTGC-AATA-TAT-GT-GT-ATGTT------TATATAgctctctttctttcgctctctttctctttctgtcttatctcaaactcatctctatctct
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TGGGGGCTTTACTTTTTTTCGTCTAAATAGGCGGACAAACCCTAACATGTTTAATTTCACAAAATGGTATATCAATATTTACTAGATGTAAAAGCATATGAGATGAAACTTTGCTATATATTTATATGTTATAATATGTCA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2222222 1111111 1111111 111 11 1111111 111111 22222222222 111111 11111 111 1111 2 1 77777777777777 11111111111111111 8888888888888888888888888888888888888888888888888888888888888888888888888888888888 111 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 22 333333 1 1 3333333 1 333333 11 555555555555555555 1
lowQualScore : 66 1 4 777 4 2 8888888 0000000 777 8 77 8888888 5 1 44 000 5 1 5 1 5 11 1 1 5 5 6666666 5 1 5 0 5 5 666666 5 77777777777 666666 0 5 44444 77 77 1 5 5 5 000 3 6 3 4444 99 2 6 0 3 3 1 7 2 5 77 6 0 6 7 88888888888888 77777777777777777 2222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 777 0 1 88 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 7 6 777777 00 6 888888 1 7 3 3 0 6666666 3 7 7 6 888888 66 1 1 1 1 1 999999999999999999 3 7 1 5 1 1 1 1 1
lowQualScore : .. . . ... . . ....... ....... ... . .. ....... . . .. ... . . . . . .. . . . . ....... . . . . . . ...... . ........... ...... . . ..... .. .. . . . . ... . . . .... .. . . . . . . . . . .. . . . . .............. ................. .................................................................................. . ... . . .. ............................................................................................................................ . . ...... .. . ...... . . . . . ....... . . . . ...... .. . . . . . .................. . . . . . . . . .
lowQualScore : 11 9 4 000 0 3 1111111 0000000 000 0 99 6666666 7 7 77 000 7 3 7 0 7 11 9 0 7 7 2222222 0 4 7 4 7 7 444444 7 11111111111 444444 7 7 33333 11 99 9 7 7 4 000 2 7 5 2222 22 5 7 0 5 2 0 5 2 5 00 7 7 7 3 33333333333333 00000000000000000 0000000000000000000000000000000000000000000000000000000000000000000000000000000000 7 777 7 0 00 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 3 7 888888 00 7 333333 0 3 3 3 7 0000000 3 3 3 7 333333 55 0 0 0 0 0 555555555555555555 7 3 0 0 0 0 0 0 0
consensus : AAAATCACACGCATTTGTTACTGT--TTTGAATCGAATAATTCTATTTGTTTAAA-GGTTATTAATCAT---TTGAAAACGCGTGTCTTTGTTT-AAACATAGGTTGAAC-TG--G-AAAAAAA-C--C--C---ACT-GGAGTGTTATTTTACTCTTAAAACGTA--CACTTA-------TGACAA-TAGAAAANAGACGTGTTA---TTAACCGC-TATAATAGAAGGAAAATCACCAACAGTGAATCGCGGTTAAACAC-ANTTT-TT-ACTAAATTAATAACTNTTA-TTTCAGTGAAAC-ATACACCGATCGAAAGCTGAACTATTACCTGATCGAGTGATGT-------TAACAT-ATTAATAGAAACTGGCGTAACTACGGAGAATTAAGCATTTA-TTCACGGGCACTCCTTCGCA-AAA-CGG------CGAAAAATACCCACAACCATTTCA-TACAGTATTGTAGTAGCTAGTGAAATCGCTGATT-----------AAACAACATGAATG------ATAAACGTATAATTAGATT-AGT-----AAAGTAT-AAAAATAAAAGAAAACAGCGTT--ATTAACTTTAGTAAAATAGAAAAAT-TAGATGTTGAATAACATAGA-TATAAAAACATGATGAACA---ACATATCATTTATGTAAATTACAAAATAGGCTTCATCTTTTATTAAA-AATGTAAA----CTACACAAATC--AAGTTATAATTGAAACAATGACCGATCGGTGGGCCGTGTTCTT-ACAAAATCAAAAG-AAAATTTAATAATTTGTAAATGCGAATAAATTAAGAAAAATAAGCATTAATTTAAGGCAATATGCGGTTGCATATCACGCGTCACGGAAACGAGAATTAGCCGTGGCGCTTATAATATCAATCACTACTTCTAAGTCAGTTAAATAACTT-TATACTCGTTAC-AGCATACTGCTACGT-TTTCCATTCATTCATTCA--------------TTCATNNNNNNNNNNNNNNNNNCTCGCTCGCTCATTTATTTATCCTTGTCACTAATATATTTTTTTATGTTCATTAACAGTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAATTGTATTTACCGGATAGTTTTATTCC-T-TACTACGTGNATACTATAAAACTTCCTTTTATTTAAGTATTCTGACACCAGGCTTAAACTTAGAAACGTTTCTTATCAAAATAAAGTTGCATGTAATAATGTTTCTTGCAATTTATTATTTCCATTCCGTAT-TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTATTGTGTGCGAGGTATAACATTCTTAGTCTGAACAGGTGAACATATCCATAATATATGTTTACATTTTATTAAATGACATATTACTATTTATGACGAGTGTGC-TGTCAGAA------TNAGAAAATTGAAT-TGA-TCCGAAG---TG--AATA-TATAGTAGTCATATT------CATATAATGATTGGGATTNTTTTCTTTAANATGTTTATGAATTGNTCATTGTATTGATNCANCAAGNGGCTTTTGTCCACGTGTACATTTTTTGACCAAGGAGCCTTTGTCCAAGGGGCGTTTGTCCGGATACCTTCTCTACTATCCCTNTTTCGTTACTCNATTTTCTCCTCTTTGTTATCATTTTTCTTTACNGTTCTGNTATTCTNTACTCTTCNTCCATTTCCAAATTTAGCTCTCTCTCTTATCTCAAACTCCGC
Reference ( family-2471 ) : AAAATCACACGCATTTGTTACTGT--TTTGAATCGAATAATTCTATTTGTTTAAA-GGTTATTAATCAT---TTGAAAACGCGTGTCTTTGTTT-AAACATAGGTTGAAC-TG--G-AAAAAAA-C--C--C---ACT-GGAGTGTTATTTTACTCTTAAAACGTA--CACTTA-------TGACAA-TAGAAAANAGACGTGTTA---TTAACCGC-TATAATAGAAGGAAAATCACCAACAGTGAATCGCGGTTAAACAC-ANTTT-TT-ACTAAATTAATAACTNTTA-TTTCAGTGAAAC-ATACACCGATCGAAAGCTGAACTATTACCTGATCGAGTGATGT-------TAACAT-ATTAATAGAAACTGGCGTAACTACGGAGAATTAAGCATTTA-TTCACGGGCACTCCTTCGCA-AAA-CGG------CGAAAAATACCCACAACCATTTCA-TACAGTATTGTAGTAGCTAGTGAAATCGCTGATT-----------AAACAACATGAATG------ATAAACGTATAATTAGATT-AGT-----AAAGTAT-AAAAATAAAAGAAAACAGCGTT--ATTAACTTTAGTAAAATAGAAAAAT-TAGATGTTGAATAACATAGA-TATAAAAACATGATGAACA---ACATATCATTTATGTAAATTACAAAATAGGCTTCATCTTTTATTAAA-AATGTAAA----CTACACAAATC--AAGTTATAATTGAAACAATGACCGATCGGTGGGCCGTGTTCTT-ACAAAATCAAAAG-AAAATTTAATAATTTGTAAATGCGAATAAATTAAGAAAAATAAGCATTAATTTAAGGCAATATGCGGTTGCATATCACGCGTCACGGAAACGAGAATTAGCCGTGGCGCTTATAATATCAATCACTACTTCTAAGTCAGTTAAATAACTT-TATACTCGTTAC-AGCATACTGCTACGT-TTTCCATTCATTCATTCA--------------TTCATNNNNNNNNNNNNNNNNNCTCGCTCGCTCATTTATTTATCCTTGTCACTAATATATTTTTTTATGTTCATTAACAGTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAATTGTATTTACCGGATAGTTTTATTCC-T-TACTACGTGNATACTATAAAACTTCCTTTTATTTAAGTATTCTGACACCAGGCTTAAACTTAGAAACGTTTCTTATCAAAATAAAGTTGCATGTAATAATGTTTCTTGCAATTTATTATTTCCATTCCGTAT-TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTATTGTGTGCGAGGTATAACATTCTTAGTCTGAACAGGTGAACATATCCATAATATATGTTTACATTTTATTAAATGACATATTACTATTTATGACGAGTGTGC-TGTCAGAA------TNAGAAAATTGAAT-TGA-TCCGAAG---TG--AATA-TATAGTAGTCATATT------CATATAATGATTGGGATTNTTTTCTTTAANATGTTTATGAATTGNTCATTGTATTGATNCANCAAGNGGCTTTTGTCCACGTGTACATTTTTTGACCAAGGAGCCTTTGTCCAAGGGGCGTTTGTCCGGATACCTTCTCTACTATCCCTNTTTCGTTACTCNATTTTCTCCTCTTTGTTATCATTTTTCTTTACNGTTCTGNTATTCTNTACTCTTCNTCCATTTCCAAATTTAGCTCTCTCTCTTATCTCAAACTCCGC
gi|1 : AAAACCACACGCATTTAGTACTGT--TTTGAATCGAATAATTCTATTTGTTTAAA-GGTTATTAATCAT---TTGAAAACGCATGTCTTTGTTT-AAGCATAGGTTGAAT-TG--G-AAAAAAA-CAACAAC---ACT-GGAGTGCTATTTTACTCATATAACGTA--CACTTA-------TGACAA-TTGAAAAAAGACGTATTG---TTAACCGC-TATAAGAGAAGGAAAATCACCAACAGTGAATCACGGTTAAACAC-ATTTT-TA-ACTATATTTATAACTTTTA-TTTCAGTGAAAC-ATACATCGATCGAAAGCTGAACTATTATCTGAGCAAGTGA-GT-------TAACAT-ATTAATAGAAACTGACGTAACTACGGAGAGTTAAGCATTTA-TTCACGGGCACTCCTTCGCA-AAA-CGG------CGAAAAATACCCACAACCAATTCA-AACAGTATTGTAGTAGCTAGTGAAATCGCTGGTT-----------AAACAACATGAATG------ATAAACGTTTAATTAGATT-AGT-----AAAGTAT-AAAAATAAAAGAAAACAGCGTT--ATTAACTTTAGTAAAATAGAAAAAT-TAAATGTTAAATAACATAAA-TATAAAAACATGATGAACA---ACATATCATTTATGTCAATTACAAAATAGGCTTCATCTTTTATTAAA-AATGAAAA----CTACACAAATC--AAGTTATAATT-AAACAGTGGCCGATCGGTGGGCCGTGTTCTT-ACAAAATCAAAAG-AAAATTTAAAAATTTGTAAATGCGAATAAGTCAAGAAAAATAAGCATTAATTTAAGGCAATATGCGGTTGCATATCACGCGTCACGGAAACAAGAATTAGCCGTAACGCTTATAATATCAATCACTACTTCTAAGTCAGTTAAATAACTT-CATACTCGTTAC-AGCATACTGCTACAT-TTTCCATTCATTCATTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCGCTCGCTCATTTATTTATCCTTGTCACTAATATATTTTTTTATATTTATTAACAGTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAATTGTATTTACCAGATAGTTTTATTCCTT-TACTATGTGTATACTATAAAACTTCCTTTTATTTAAGTATTCTGAATCCAGGCTTAAACTTTGAAACATTTCTTATCAAAATAAAGTTGCATGGTATAATGTTTCTTGCAATTTATTATTTCCATTCCGTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTATTGTGTGCGAGGTATCACATTCTTAGTCTGAACAGGTGAACATATCAATGATATCTGTTTACATTTTATTATATAACATATTACTATTGATGACGAGTGTGCGTGTCAGAA------TAAGATATTTGAAT-TGA-TCCGAAG---TGAAAATATTATAGTAGTCATATTCATGTACATATAATGATTGGGATTTTTTTCTTTAAGATGTTTATGAATTGTTCATTGTATTGATTCACCAAGTAGCTTTTGTCCACGTGTACA------------------TTTGTCCAAGGGGCGTTTGTCCGGATACCTTCTCTACTATCCCTTTTTC-TTACTCCATTTTCTCCTCTTTGTTATCATTTTTCTTTACAGTTCTGATATTCTTTACTCTTTCTCCATTTCCAAATTTAACTTTCTCTCTTATCTCAAATTCCGC
gi|10 : GTTATTTATCAT---TTGAAAACGTGTGTCTTTGTTT-AAACGTAGATTTAAC-AG--GTAAAATAA-C--C--C---------------ATTTTACTCTT
gi|10 : TTTAAACGTA--GATTTA---------ACAGGTA-AAATAACCCATTTTACTCTTTACCGC-TAAAATAGAAGGGAAAACACCAACAGTGAATCGCGGTTAAACAC-ATTTT-TT-ACTAAATTACTTACTGGTA-TTATAGTGAAAC-AAACACCGATCAAAAGCTGACCTATTACCTGATTGAAGGATGTTATTATATAACAT-ATTTATAAAAACTGGtaccgctaaaatagaagggaaaacaccaacagtgaatcgcggttaaacacattttttactaaattacttactggtattatagtgaaacaaacaccgatcaaaagctgacctattacctgattgaaggatgttattatataacatatttataaaaactgggg
gi|11 : gttatttatcatttgaaaacgtgtgtctttgATTGTATTTACCAGATATTTTTATTCC-T-TACTACGTGAACACTATAAAACTTCCTTTTATTTAAGTATTCTGGCACCAGGATTAAATTTAGAAACA-TTCTTATCAAAATAAAGTTGCATGTAACAATGTTTATTGCAAATTGTTATTTCCATTCCGTAgg
gi|13 : AAATTCACACGCATTTGTTATTAT--TTTGGATCGATTAATTTCATTTGTTGAAATACTTTTTTATCAT---TTGAAAACGTTTGTTTTTCTTT-AAGCATAGGTTAAAC-AG--GCAAAAAAG-C--C--C---ACT-GGGGTTTTGTTTTACTCTT
gi|14 : AACTCACACGCATTTGTTACTGT--TTTGAATCGAATAATTACATTTGTTAAAA-GGTTATTAATAAT---TTGAAATCATGTGTCTTCGTTT-AAACATAGGGTGACCATG--C-AAAGAAACC--C--C---ACTGGGAGTGTTATTTT
gi|15 : AAATCATACGCATTTGTTACTGT--TTTGAAT-----AATTACATTTGTTTAAA-GGTTATTAATCAT---TTGAAATCGCGTGTCTTCGTTT-AAACATAGAGTGAACATG--C-AAAAAAA----A--C---ATTGGGAGTGTTATTTTAC
gi|16 : CCTTTGTCCAAGAGGCATTTGTCTGGATACC--CTCTAC
gi|2 : AAATCAAACGCATTTGTAACTGT--TTTGAATCGAATAATTCTATTTGTTTAAA-GGTTATTTATTAT---TTGAAAACGCGTGTCTTTGTTT-AAACATAAATTGAAC-TTCCA-AAATAAA-C---------ACT-GAAGTGTTATTTTACTCTTAAAACGTA--CACTTA-------TGACAA-TAGAAAACAGACGTGTTA---TTAACCGC-TATAAGAGAAGGAAAATCACCAACAGTGAAATGCGGTTAAACAC-AATTT-TTTACTAGATTAATAACTTTTA-TTTCAGTGAAAC-ATACACCGATCGAAAGCTGAACTATTATCTGATCGAGTGATGT-------TTACAT-AGTAATAGAAACTAGCGTAACTACGGAGAATTAAGCATTTA-TTAACGGGCATTCCTTCGCA-AAAACGG------CGAAAATTACCCACAACCATTTCG-TACAGTACTGTAGTAGCTAGTGAAATCGCTGATT-----------AAACAACATGAATG------ATAAACGTATAATTAGATT-AGT-----AAAGTAT-AAAAATAAAAGAAAACAGCGTT--ATTAACTTAAGTAAAATAGAAAAAAATAGATGTTAAATAACATAGA-TATTAAA-CATGATGAACA---ACATATCATTTATGTCAATTACAAAATAGGCTTCATCTTTTATTAAA-AATGTAAA----CTACGCAAATC--AAGTTATAATTGAAACAATGACCGATCGGTGGGCCGTGTTCTA-ACAAAATCAAAAG-AAAATTTTATTATTTGTAAATGCGAATAAATTAAGAAAAATAAGCATTAATTTAAGGCAATATGCGGTTGCAAATCACGCGTCACGGAAACAAGAATTAGCCGTGGCGCTTATAATATCAATCACTACTTCTAAGTCAGTTAAATAACTT-TATACTCGTTACTCGCATACTGCTACGT-TTTCCATTTATTC----A--------------TTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTATGTTCATTAACAGTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTGTATTTACCGGATAGTTTTATTCC-TATACTTTTTGCATACTATAAAACTTCCTTTTATTTAAGTGTTCTGACACCAGGCTTAAACTTAGAAACGTTTCTTATCAAAATAAAGTTGCATGTAATAATGTTTCTTGCAATTTATTATTTCCATTCCGTA--TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTATTGTGTGCGAGGTATAACATTCTTAGTTTGAACAGGTGAACATATCCATAATATATGTTTACATTTTATTAAATGACATATTACTATTTATGACG
gi|3 : AAAATCACACGCATTTGTTACTGT--TTT-AATCGAATAATTCTATTTGTTAAAA-GGTTATTAATCAT---TTGAAAATGCGTGTCTTTGTC---------------AC---------------C--C--C---ACT-GGAGTGTTATTTTACTCTTAAAACGTA--CACTTA-------TGACAA-TAGAAAATAGACGTGTTA---TAAACCGC-TATAATAGAAGGAAAATCACCAAAAGTGAATCACGGTTAAACAC-AATTT-TA-ACTAAATTAATAACTGTTA-TTTTAGTGAAAC-GTACACCGATCGAAATCTGAACTATTACCTGATCGAGTGACGT-------TAACAT-ATTAATATGAACTGGCGTAACTACGGAGAATTAAGTATTTA-TTCACAAGCACTCCTTCGCA-AAA-CGG------CGAAAAATACCCACAACCATTTCATTACAGTATTGTAGTAGCTAAAGAAATCGCTGATTAACTTTTTTTGAAACAACATGAATG------ATAAACGTATACTTAGATT-AGT-----AAAGTAT-AAACATAAAAGAGAACAGCGTT--ATTAACTTTAGTAAAATAGAAAATT-TACATGTTGAATAACATAGAGTATAAAAACATGATGGACA---ACATACCATTTATGTAAATTGCAAAATAGGCTTCATCTTTTATTAAA-AATATAAA----CTACACATACT--AAGTTATACTTGAAACAATGACCGATCGGTGGGCCGTGGTCTT-ACAAAATCTAAAGAAAAATTTAATAATTTGTAAATGCGAATAAATTAAGAAAAATAAGCATTGATTTAAGGCAATATGCGGTTGCATATCACGCGTCATGGAAACGAGAATTAGCCGTGGCACTTATAATATCAATCACAATTTCTAAGTCAGTTAAAT-GCTT-CATTCTCGTTAC-AACATACTGCTACAT-
gi|4 : AACCACACGCATTTGTTACTGT--TTTGAATCGAATAATTCTATTTGTTTAAA-GGTTATTAATCAT---TTGAAAACGCGTGTCTTTGTTT-AAACATAGGATGAAC-TG--G-TAAAAAA-C--C--C---ACT-TGAGTGTTAATTTACTCTTAAAACGTA--CACTTA-------TGACAA-TAAAAAATAGACGTGTTA---TTAACCAC-TTTAAGAGAAGGAAAATCACCAACAGTGAATCGCGGTTAAACAC-AATTT-TT-ACTAAATAAATAACTTTTA-TTTCAGTGAAAC-ATACACAAATCGAAAGCTGAATTATTACCTGATCGAGTGATGT-------AAACAT-TTTAATAGAAACTGGTGTAACAACGGAGAATTAAGCATTTA-TTCACGGGCATTCGTTCGCA-AAA-CGG------CAAAAAATACTCACAACCATTTCA-TACAGTAATGTAGTAGCTAGTGAAATCGCTGATT-----------AAACAACATGAATG------ATAAACGTAAAATTAGATT-GGT-----AAAGTAT--AAAATAAAAGAAAACAGCGTT--ATTAACTTTAGTAAAATAGAAAAAT-TAAATGTTGAATAACATAGA-TAT-AAAACATGATGAACA---ACATATCATATATGCAAATTACAAAATAGACTTCATCTTTTATCAAC-AATGTATA----CTACACAAATC--AAGTTATAATTGAAACAATGACCGATTGGTGGCCCGTGTTCTT-ACAAAATCAAAAC-AAAATTTAATAATTTGTAAATGCTAATTAATTAAGAAAAATAAGCATTATTTTAAG----------------------GCGTCACTGAAACAAGAATTAGCCGTGGCGCTTATAATACCAATCACTACTTCTAAGTCAGTTAAATAACTT-TATACTCGTTAA-AGCATACTGCTACAT-TTT
gi|5 : AAAATCACACGTAATTGT-AGTGTAGTC---ATTGACTAATTGTATTTGTTTAAA-TG--ATTAATTATATTTTAAAAAAATAC-TATTTATTA-AAA---AGGC------------AAAGCAG-C--C--CGTCAC-----GTGTTCTTTAACTGTTAAAACATATACACTTAAGCTTATTAATAA-TAAGAA---------TTA---TTAACCGCACAGAATGTACGAAAAACCACCAACAGTGAATCGCTGTTCAACACCAGTTT-T------GGTTTATA--TCGTAGTTTTA-TAAAACCATACACAGATCGAGAGCTGAATTCTTTATTGAGTGAATAATGA-------TAACATGACCAAT-TTAACTGACAT-------GATAATTAAGCCTTTA-TCGATTGGCAATTCTTTATACAAA-CGGTTTCTATGTAAAACA---ATAGCAATTTTA-TATGGTACTGT------------AATCGCTATTT-----------AAACAATATAAATACATTTTACAAA--TAAAATTATATTAAGTTTATCAAAGTAT-CAAAATACAAGGAAACA--GTTGGATTAACTTTAGT----TAG-----T---GAT-TTAAACAAAACAGA--ACTTAAACAT-ATGCGCATTTTTACATTATCTATGTAAATTACAAAATGTGCATCATC-----TTAAATAATG-ATATTTTCCACATAAATTAAAAGTTATAATTGAAACAACGACATGTCGG-AATCCATATTTTT-AAGAAATTTAATGTACAGTTCATT--TTTCTTAATTAGCATAACGTCAAAAAAAT--------ATTCAAGGCAATA---------A-ATCACGCGTTACGGAAATTGAAATTTGTCACGCCGCGAATAA-ATCAATTAAT-CTT-TAAATTAATTACAT-ACTTAAATATTCAATAC-AGCATACTGTTATGTATTTTTATT
gi|6 : TGATGT-------TAACAT-ATTAATAGAAACTGGCGTAACTACGGAGAATTAAGCATTTA-TTCACGGGCATTTCTTCACA-AAA-CGG------CGAAACATACCCACAACCATTTCA-TACAGTATTGCAGTAGCCAGTGAAATCGGTGATT-----------AAACAACATGAA-G------ATAAACGTATAATTAGATT-AGT-----AAAGTAT-AAAAATAAAAGAAAAAAGCGTT--ATTAACTTAAGTAAAATAGAAAAAT-TAGATGTTGAATAACATAGA-TATAAAAACATGATGAACA---ACATATCATTTATGTAAATTACAAACAAAGCTTCATCGTTTATCAAA-AATATAAA----CTACACAAATC--AAGTTATACTTGAAACAATGAC----CGGTGGGTCGTGTTCTTAAAAAAATCAAAAGAAAAACTGAATAATTTGTAAATGCAAATAAATTAAGAAAAATAAGCATTAATTTAAGGCAATATGTGGTTGCATATCACGCGTCACGGAAACGAGAATGAGCCGTGGCGCTTATAATATCAATCACTATTTCTAAGTCAGTTAAAT-GCTT-TA-ACTCGTTAC-AGCATACTGCTACAG-TTTCCATTCATTCATTCA--------------TTCAT
gi|7 : AAAGCATACGCATTTGTTACTGT--TTTGAATCGAATACTTTTATTTGTTTAAA-GGTTATTAATCAT---TTGAAAACGCGTGTCTTTGTTTTAAACATAGGTTGAAC-TG--GCAAAAAAA-A--C--C---ACT-GGAGCGTTATTTTACTCTTAAAACGTA--CACTTA-------TGACAA-TAGAAAAGAGATGTGTTA---TAAACCGC-TATAATGGAAGGAAAATTACCAACAGTGAATCACGGTTAAACAC-ATTTTTTT-ACTAAATTCATAACTGTTA-TCTTAGTGAAAC-ATACACCGATCGAAAGCTGAACTATTACCTGATCGAGTGATGT-------TAACAT-ATTAATATGAACTGGCGTAACTACGGAGAATTAAGCATTTATTTTACGGGCACTCCTTCGCA-AAA-CGG------CGAAAAATACCCACAACTATTTCA-TACAGTATTGTAGTAGCTAGTTGAATCGCTGATT-----------AAACAACATGAATG------ATAAAAGTATAATTTAATT-AAT-----AAAGTATAAAAAATAAAAGAAAACAGCGTT--ATTAACTTTTGTAAAATAGAAAATT-TAGATGTTGAATAACATAGA-TATAAAAACATGATGAAAA---ACATAT
gi|8 : TGTGC-TGTCAGAA------TTAGAAAATTGAAT-TGA-TCTGAAG---TG--AATA-TATAGTAGTCATATT------CATATAATAATTGGGAT-ATTTTCTTTAATATGTTTATGAATTAATCATTGTATTGATGCAACAAGGGGTTTTTGTCCACGTGTACATTTTTTGACCAAGGAGCTTTTGTCCATGGTGCTTTTGTCCGGATACCTTCTCTACTATCCCTATTTCGTTACTCAATTTTCTCCTCTTTGTTATCATTTTTTTTTACTGTTCTGTTATTTTGTACTCTTCATCCATTTCCAAATTTAGCTCTCTCTCTTATCTTAAACTCCGC
gi|9 : TATAATTTTCTTAGTCTAAACAGAGAAACACA--CAGAACAAAT--TTGTCTTTTATAAAATGATATATTGATATTTAT------TGTA--TGT-AGAATAGGCCTCAGAAAA-TGGTTATGATTTTGAAACTTTGC-AATA-TAT-GT-GT-ATGTT------TATATAgctctctttctttcgctctctttctctttctgtcttatctcaaactcatctctatctct
blockSeqs : AG T T ATT T T TTCCA CCC GTC G TA AGCTTAT G G TA CTC A T C T T TT A G G C TATTATA G A T C A TTTCTA T AACTTTTTTTG CATTTT A TTATC AA GG A A G T TTT T T T TTTT AA C A A T T C A A A AA T A A . NNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN TA A GT TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN T G . C C TAGGCC T T A T CTTTGC . A A C . A T A G A G TTTTTTGACCAAGGAGCT A T A G A T T G A
blockSeqs : . A . . . T AGGT CC . G . . . G AC . . G . A . T A T . . . . G . . . . . . . . . A . T . . A . T . T . . C . T A T C T G A T . . . . T C A . . . . . C . . . TG . . . . . T .
blockSeqs : . A . . . G AGGC CC . . . . . A AT . . T . A . A A G . . . . T . . . . . . . . . A . A . . T . T . T . . C . A A T T T A . C . .
blockSeqs : . C . . . G ATGC CC . . . . . A AT . . G . A . T A T . . . . G . . . . . . . . . C . A . . A . G . T . . A . . A . . . T . T . .
blockSeqs : . C . . . T ATGC CC . . . . . G AG . . T . G . T T C . . . . T . . . . . . . . . A . T . . A . . . . . . . . . . . . . G . T . .
blockSeqs : . C . . . A TGGC CC . . . . . . . . . T . T . . C G . . . . G . . . . . . . . . . . . . . . .
blockSeqs : . G . . . C TGG AC . . . . T
blockSeqs : . T . . . T . A . .
blockSeqs : . . . . C . .
blockSeqCons : AGGC*** CC*****
originalCons : AAAATCACACGCATTTGTTACTGT--TTTGAATCGAATAATTCTATTTGTTTAAA-GGTTATTAATCAT---TTGAAAACGCGTGTCTTTGTTT-AAACATAGGTTGAAC-TG--G-AAAAAAA-C--C--C---ACT-GGAGTGTTATTTTACTCTTAAAACGTA--CACTTA-------TGACAA-TAGAAAANAGACGTGTTA---TTAACCGC-TATAATAGAAGGAAAATCACCAACAGTGAATCGCGGTTAAACAC-ANTTT-TT-ACTAAATTAATAACTNTTA-TTTCAGTGAAAC-ATACACCGATCGAAAGCTGAACTATTACCTGATCGAGTGATGT-------TAACAT-ATTAATAGAAACTGGCGTAACTACGGAGAATTAAGCATTTA-TTCACGGGCACTCCTTCGCA-AAA-CGG------CGAAAAATACCCACAACCATTTCA-TACAGTATTGTAGTAGCTAGTGAAATCGCTGATT-----------AAACAACATGAATG------ATAAACGTATAATTAGATT-AGT-----AAAGTAT-AAAAATAAAAGAAAACAGCGTT--ATTAACTTTAGTAAAATAGAAAAAT-TAGATGTTGAATAACATAGA-TATAAAAACATGATGAACA---ACATATCATTTATGTAAATTACAAAATAGGCTTCATCTTTTATTAAA-AATGTAAA----CTACACAAATC--AAGTTATAATTGAAACAATGACCGATCGGTGGGCCGTGTTCTT-ACAAAATCAAAAG-AAAATTTAATAATTTGTAAATGCGAATAAATTAAGAAAAATAAGCATTAATTTAAGGCAATATGCGGTTGCATATCACGCGTCACGGAAACGAGAATTAGCCGTGGCGCTTATAATATCAATCACTACTTCTAAGTCAGTTAAATAACTT-TATACTCGTTAC-AGCATACTGCTACGT-TTTCCATTCATTCATTCA--------------TTCATNNNNNNNNNNNNNNNNNCTCGCTCGCTCATTTATTTATCCTTGTCACTAATATATTTTTTTATGTTCATTAACAGTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAATTGTATTTACCGGATAGTTTTATTCC-T-TACTACGTGNATACTATAAAACTTCCTTTTATTTAAGTATTCTGACACCAGGCTTAAACTTAGAAACGTTTCTTATCAAAATAAAGTTGCATGTAATAATGTTTCTTGCAATTTATTATTTCCATTCCGTAT-TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTATTGTGTGCGAGGTATAACATTCTTAGTCTGAACAGGTGAACATATCCATAATATATGTTTACATTTTATTAAATGACATATTACTATTTATGACGAGTGTGC-TGTCAGAA------TNAGAAAATTGAAT-TGA-TCCGAAG---TG--AATA-TATAGTAGTCATATT------CATATAATGATTGGGATTNTTTTCTTTAANATGTTTATGAATTGNTCATTGTATTGATNCANCAAGNGGCTTTTGTCCACGTGTACATTTTTTGACCAAGGAGCCTTTGTCCAAGGGGCGTTTGTCCGGATACCTTCTCTACTATCCCTNTTTCGTTACTCNATTTTCTCCTCTTTGTTATCATTTTTCTTTACNGTTCTGNTATTCTNTACTCTTCNTCCATTTCCAAATTTAGCTCTCTCTCTTATCTCAAACTCCGC
finalCons : AAAATCACACGCATTTGTTACTGT--TTTGAATCGAATAATTCTATTTGTTTAAA-GGTTATTAATCAT---TTGAAAACGCGTGTCTTTGTTT-AAACATAGGTTGAACAGGC---AAAAAAACC-----C---ACT-GGAGTGTTATTTTACTCTTAAAACGTA--CACTTA-------TGACAA-TAGAAAANAGACGTGTTA---TTAACCGC-TATAATAGAAGGAAAATCACCAACAGTGAATCGCGGTTAAACAC-ANTTT-TT-ACTAAATTAATAACTNTTA-TTTCAGTGAAAC-ATACACCGATCGAAAGCTGAACTATTACCTGATCGAGTGATGT-------TAACAT-ATTAATAGAAACTGGCGTAACTACGGAGAATTAAGCATTTA-TTCACGGGCACTCCTTCGCA-AAA-CGG------CGAAAAATACCCACAACCATTTCA-TACAGTATTGTAGTAGCTAGTGAAATCGCTGATT-----------AAACAACATGAATG------ATAAACGTATAATTAGATT-AGT-----AAAGTAT-AAAAATAAAAGAAAACAGCGTT--ATTAACTTTAGTAAAATAGAAAAAT-TAGATGTTGAATAACATAGA-TATAAAAACATGATGAACA---ACATATCATTTATGTAAATTACAAAATAGGCTTCATCTTTTATTAAA-AATGTAAA----CTACACAAATC--AAGTTATAATTGAAACAATGACCGATCGGTGGGCCGTGTTCTT-ACAAAATCAAAAG-AAAATTTAATAATTTGTAAATGCGAATAAATTAAGAAAAATAAGCATTAATTTAAGGCAATATGCGGTTGCATATCACGCGTCACGGAAACGAGAATTAGCCGTGGCGCTTATAATATCAATCACTACTTCTAAGTCAGTTAAATAACTT-TATACTCGTTAC-AGCATACTGCTACGT-TTTCCATTCATTCATTCA--------------TTCATNNNNNNNNNNNNNNNNNCTCGCTCGCTCATTTATTTATCCTTGTCACTAATATATTTTTTTATGTTCATTAACAGTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAATTGTATTTACCGGATAGTTTTATTCC-T-TACTACGTGNATACTATAAAACTTCCTTTTATTTAAGTATTCTGACACCAGGCTTAAACTTAGAAACGTTTCTTATCAAAATAAAGTTGCATGTAATAATGTTTCTTGCAATTTATTATTTCCATTCCGTAT-TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTATTGTGTGCGAGGTATAACATTCTTAGTCTGAACAGGTGAACATATCCATAATATATGTTTACATTTTATTAAATGACATATTACTATTTATGACGAGTGTGC-TGTCAGAA------TNAGAAAATTGAAT-TGA-TCCGAAG---TG--AATA-TATAGTAGTCATATT------CATATAATGATTGGGATTNTTTTCTTTAANATGTTTATGAATTGNTCATTGTATTGATNCANCAAGNGGCTTTTGTCCACGTGTACATTTTTTGACCAAGGAGCCTTTGTCCAAGGGGCGTTTGTCCGGATACCTTCTCTACTATCCCTNTTTCGTTACTCNATTTTCTCCTCTTTGTTATCATTTTTCTTTACNGTTCTGNTATTCTNTACTCTTCNTCCATTTCCAAATTTAGCTCTCTCTCTTATCTCAAACTCCGC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TGGGGGCTTTACTTTTTTTCGTCTAAATAGGCGGACAAACCCTAACATGTTTAATTTCACAAAATGGTATATCAATATTTACTAGATGTAAAAGCATATGAGATGAAACTTTGCTATATATTTATATGTTATAATATGTCA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111111 1111111 111 11 1111111 111111 22222222222 111111 11111 111 1111 2 1 77777777777777 11111111111111111 8888888888888888888888888888888888888888888888888888888888888888888888888888888888 111 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 22 333333 1 1 3333333 1 333333 11 555555555555555555 1
lowQualScore : 66 1 4 777 4 0 6 0 77 0000000 777 8 77 8888888 5 1 44 000 5 1 5 66 11 1 1 5 5 6666666 5 1 5 0 5 5 666666 5 77777777777 666666 0 5 44444 77 77 1 5 5 5 000 3 6 3 4444 99 2 6 0 3 3 1 7 2 5 77 6 0 6 7 88888888888888 77777777777777777 2222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 777 0 1 88 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 7 6 777777 00 6 888888 1 7 3 3 0 6666666 3 7 7 6 888888 66 1 1 1 1 1 999999999999999999 3 7 1 5 1 1 1 1 1
lowQualScore : .. . . ... . . . . .. ....... ... . .. ....... . . .. ... . . . .. .. . . . . ....... . . . . . . ...... . ........... ...... . . ..... .. .. . . . . ... . . . .... .. . . . . . . . . . .. . . . . .............. ................. .................................................................................. . ... . . .. ............................................................................................................................ . . ...... .. . ...... . . . . . ....... . . . . ...... .. . . . . . .................. . . . . . . . . .
lowQualScore : 11 9 0 000 0 7 3 7 33 0000000 000 0 99 6666666 7 7 77 000 7 3 7 77 11 9 0 7 7 2222222 0 4 7 4 7 7 444444 7 11111111111 444444 7 7 33333 11 99 9 7 7 4 000 2 7 5 2222 22 5 7 0 5 2 0 5 2 5 00 7 7 7 3 33333333333333 00000000000000000 0000000000000000000000000000000000000000000000000000000000000000000000000000000000 7 777 7 0 00 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 3 7 888888 00 7 333333 0 3 3 3 7 0000000 3 3 3 7 333333 55 0 0 0 0 0 555555555555555555 7 3 0 0 0 0 0 0 0
consensus : AAAATCACACGCATTTGTTACTGT--TTTGAATCGAATAATTCTATTTGTTTAAAGG-TTATTAATCAT---TTGAAAACGCGTGTCTTTGTTT-AAACATAGGTTGAACNGGCAAAA-AAA-C--C--C---ACT-GGAGTGTTATTTTACTCTTAAAACGTA--CACTTA-------TGACAA-TAGAAAANAGACGTGTTA---TTAACCGC-TATAATAGAAGGAAAATCACCAACAGTGAATCGCGGTTAAACAC-A-NTTTTT-ACTAAATTAATAACTNTTA-TTTCAGTGAAAC-ATACACCGATCGAAAGCTGAACTATTACCTGATCGAGTGATGT-------TAACAT-ATTAATAGAAACTGGCGTAACTACGGAGAATTAAGCATTTA-TTCACGGGCACTCCTTCGCA-AAA-CGG------CGAAAAATACCCACAACCATTTCA-TACAGTATTGTAGTAGCTAGTGAAATCGCTGATT-----------AAACAACATGAATG------ATAAACGTATAATTAGATT-AGT-----AAAGTAT-AAAAATAAAAGAAAACAGCGTT--ATTAACTTTAGTAAAATAGAAAAAT-TAGATGTTGAATAACATAGA-TATAAAAACATGATGAACA---ACATATCATTTATGTAAATTACAAAATAGGCTTCATCTTTTATTAAA-AATGTAAA----CTACACAAATC--AAGTTATAATTGAAACAATGACCGATCGGTGGGCCGTGTTCTT-ACAAAATCAAAAG-AAAATTTAATAATTTGTAAATGCGAATAAATTAAGAAAAATAAGCATTAATTTAAGGCAATATGCGGTTGCATATCACGCGTCACGGAAACGAGAATTAGCCGTGGCGCTTATAATATCAATCACTACTTCTAAGTCAGTTAAATAACTT-TATACTCGTTAC-AGCATACTGCTACGT-TTTCCATTCATTCATTCA--------------TTCATNNNNNNNNNNNNNNNNNCTCGCTCGCTCATTTATTTATCCTTGTCACTAATATATTTTTTTATGTTCATTAACAGTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAATTGTATTTACCGGATAGTTTTATTCC-T-TACTACGTGNATACTATAAAACTTCCTTTTATTTAAGTATTCTGACACCAGGCTTAAACTTAGAAACGTTTCTTATCAAAATAAAGTTGCATGTAATAATGTTTCTTGCAATTTATTATTTCCATTCCGTAT-TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTATTGTGTGCGAGGTATAACATTCTTAGTCTGAACAGGTGAACATATCCATAATATATGTTTACATTTTATTAAATGACATATTACTATTTATGACGAGTGTGC-TGTCAGAA------TNAGAAAATTGAAT-TGA-TCCGAAG---TG--AATA-TATAGTAGTCATATT------CATATAATGATTGGGATTNTTTTCTTTAANATGTTTATGAATTGNTCATTGTATTGATNCANCAAGNGGCTTTTGTCCACGTGTACATTTTTTGACCAAGGAGCCTTTGTCCAAGGGGCGTTTGTCCGGATACCTTCTCTACTATCCCTNTTTCGTTACTCNATTTTCTCCTCTTTGTTATCATTTTTCTTTACNGTTCTGNTATTCTNTACTCTTCNTCCATTTCCAAATTTAGCTCTCTCTCTTATCTCAAACTCCGC
Reference ( family-2471 ) : AAAATCACACGCATTTGTTACTGT--TTTGAATCGAATAATTCTATTTGTTTAAAGG-TTATTAATCAT---TTGAAAACGCGTGTCTTTGTTT-AAACATAGGTTGAACAGGCAAAA-AAA-C--C--C---ACT-GGAGTGTTATTTTACTCTTAAAACGTA--CACTTA-------TGACAA-TAGAAAANAGACGTGTTA---TTAACCGC-TATAATAGAAGGAAAATCACCAACAGTGAATCGCGGTTAAACAC-A-NTTTTT-ACTAAATTAATAACTNTTA-TTTCAGTGAAAC-ATACACCGATCGAAAGCTGAACTATTACCTGATCGAGTGATGT-------TAACAT-ATTAATAGAAACTGGCGTAACTACGGAGAATTAAGCATTTA-TTCACGGGCACTCCTTCGCA-AAA-CGG------CGAAAAATACCCACAACCATTTCA-TACAGTATTGTAGTAGCTAGTGAAATCGCTGATT-----------AAACAACATGAATG------ATAAACGTATAATTAGATT-AGT-----AAAGTAT-AAAAATAAAAGAAAACAGCGTT--ATTAACTTTAGTAAAATAGAAAAAT-TAGATGTTGAATAACATAGA-TATAAAAACATGATGAACA---ACATATCATTTATGTAAATTACAAAATAGGCTTCATCTTTTATTAAA-AATGTAAA----CTACACAAATC--AAGTTATAATTGAAACAATGACCGATCGGTGGGCCGTGTTCTT-ACAAAATCAAAAG-AAAATTTAATAATTTGTAAATGCGAATAAATTAAGAAAAATAAGCATTAATTTAAGGCAATATGCGGTTGCATATCACGCGTCACGGAAACGAGAATTAGCCGTGGCGCTTATAATATCAATCACTACTTCTAAGTCAGTTAAATAACTT-TATACTCGTTAC-AGCATACTGCTACGT-TTTCCATTCATTCATTCA--------------TTCATNNNNNNNNNNNNNNNNNCTCGCTCGCTCATTTATTTATCCTTGTCACTAATATATTTTTTTATGTTCATTAACAGTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAATTGTATTTACCGGATAGTTTTATTCC-T-TACTACGTGNATACTATAAAACTTCCTTTTATTTAAGTATTCTGACACCAGGCTTAAACTTAGAAACGTTTCTTATCAAAATAAAGTTGCATGTAATAATGTTTCTTGCAATTTATTATTTCCATTCCGTAT-TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTATTGTGTGCGAGGTATAACATTCTTAGTCTGAACAGGTGAACATATCCATAATATATGTTTACATTTTATTAAATGACATATTACTATTTATGACGAGTGTGC-TGTCAGAA------TNAGAAAATTGAAT-TGA-TCCGAAG---TG--AATA-TATAGTAGTCATATT------CATATAATGATTGGGATTNTTTTCTTTAANATGTTTATGAATTGNTCATTGTATTGATNCANCAAGNGGCTTTTGTCCACGTGTACATTTTTTGACCAAGGAGCCTTTGTCCAAGGGGCGTTTGTCCGGATACCTTCTCTACTATCCCTNTTTCGTTACTCNATTTTCTCCTCTTTGTTATCATTTTTCTTTACNGTTCTGNTATTCTNTACTCTTCNTCCATTTCCAAATTTAGCTCTCTCTCTTATCTCAAACTCCGC
gi|1 : AAAACCACACGCATTTAGTACTGT--TTTGAATCGAATAATTCTATTTGTTTAAAGG-TTATTAATCAT---TTGAAAACGCATGTCTTTGTTT-AAGCATAGGTTGAATTGG-AAAA-AAA-CAACAAC---ACT-GGAGTGCTATTTTACTCATATAACGTA--CACTTA-------TGACAA-TTGAAAAAAGACGTATTG---TTAACCGC-TATAAGAGAAGGAAAATCACCAACAGTGAATCACGGTTAAACAC-A-TTTTTA-ACTATATTTATAACTTTTA-TTTCAGTGAAAC-ATACATCGATCGAAAGCTGAACTATTATCTGAGCAAGTGA-GT-------TAACAT-ATTAATAGAAACTGACGTAACTACGGAGAGTTAAGCATTTA-TTCACGGGCACTCCTTCGCA-AAA-CGG------CGAAAAATACCCACAACCAATTCA-AACAGTATTGTAGTAGCTAGTGAAATCGCTGGTT-----------AAACAACATGAATG------ATAAACGTTTAATTAGATT-AGT-----AAAGTAT-AAAAATAAAAGAAAACAGCGTT--ATTAACTTTAGTAAAATAGAAAAAT-TAAATGTTAAATAACATAAA-TATAAAAACATGATGAACA---ACATATCATTTATGTCAATTACAAAATAGGCTTCATCTTTTATTAAA-AATGAAAA----CTACACAAATC--AAGTTATAATT-AAACAGTGGCCGATCGGTGGGCCGTGTTCTT-ACAAAATCAAAAG-AAAATTTAAAAATTTGTAAATGCGAATAAGTCAAGAAAAATAAGCATTAATTTAAGGCAATATGCGGTTGCATATCACGCGTCACGGAAACAAGAATTAGCCGTAACGCTTATAATATCAATCACTACTTCTAAGTCAGTTAAATAACTT-CATACTCGTTAC-AGCATACTGCTACAT-TTTCCATTCATTCATTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCGCTCGCTCATTTATTTATCCTTGTCACTAATATATTTTTTTATATTTATTAACAGTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAATTGTATTTACCAGATAGTTTTATTCCTT-TACTATGTGTATACTATAAAACTTCCTTTTATTTAAGTATTCTGAATCCAGGCTTAAACTTTGAAACATTTCTTATCAAAATAAAGTTGCATGGTATAATGTTTCTTGCAATTTATTATTTCCATTCCGTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTATTGTGTGCGAGGTATCACATTCTTAGTCTGAACAGGTGAACATATCAATGATATCTGTTTACATTTTATTATATAACATATTACTATTGATGACGAGTGTGCGTGTCAGAA------TAAGATATTTGAAT-TGA-TCCGAAG---TGAAAATATTATAGTAGTCATATTCATGTACATATAATGATTGGGATTTTTTTCTTTAAGATGTTTATGAATTGTTCATTGTATTGATTCACCAAGTAGCTTTTGTCCACGTGTACA------------------TTTGTCCAAGGGGCGTTTGTCCGGATACCTTCTCTACTATCCCTTTTTC-TTACTCCATTTTCTCCTCTTTGTTATCATTTTTCTTTACAGTTCTGATATTCTTTACTCTTTCTCCATTTCCAAATTTAACTTTCTCTCTTATCTCAAATTCCGC
gi|10 : G-TTATTTATCAT---TTGAAAACGTGTGTCTTTGTTT-AAACGTAGATTTAACAGGTAAAA-TAA-C--C--C---------------ATTTTACTCTT
gi|10 : TTTAAACGTA--GATTTA---------ACAGGTA-AAATAACCCATTTTACTCTTTACCGC-TAAAATAGAAGGGAAAACACCAACAGTGAATCGCGGTTAAACAC-A-TTTTTT-ACTAAATTACTTACTGGTA-TTATAGTGAAAC-AAACACCGATCAAAAGCTGACCTATTACCTGATTGAAGGATGTTATTATATAACAT-ATTTATAAAAACTGGtaccgctaaaatagaagggaaaacaccaacagtgaatcgcggttaaacacattttttactaaattacttactggtattatagtgaaacaaacaccgatcaaaagctgacctattacctgattgaaggatgttattatataacatatttataaaaactgggg
gi|11 : gttatttatcatttgaaaacgtgtgtctttgATTGTATTTACCAGATATTTTTATTCC-T-TACTACGTGAACACTATAAAACTTCCTTTTATTTAAGTATTCTGGCACCAGGATTAAATTTAGAAACA-TTCTTATCAAAATAAAGTTGCATGTAACAATGTTTATTGCAAATTGTTATTTCCATTCCGTAgg
gi|13 : AAATTCACACGCATTTGTTATTAT--TTTGGATCGATTAATTTCATTTGTTGAAATACTTTTTTATCAT---TTGAAAACGTTTGTTTTTCTTT-AAGCATAGGTTAAACAGGCAAAA-AAG-C--C--C---ACT-GGGGTTTTGTTTTACTCTT
gi|14 : AACTCACACGCATTTGTTACTGT--TTTGAATCGAATAATTACATTTGTTAAAAGG-TTATTAATAAT---TTGAAATCATGTGTCTTCGTTT-AAACATAGGGTGACCATGCAAAG-AAACC--C--C---ACTGGGAGTGTTATTTT
gi|15 : AAATCATACGCATTTGTTACTGT--TTTGAAT-----AATTACATTTGTTTAAAGG-TTATTAATCAT---TTGAAATCGCGTGTCTTCGTTT-AAACATAGAGTGAACATGCAAAA-AAA----A--C---ATTGGGAGTGTTATTTTAC
gi|16 : CCTTTGTCCAAGAGGCATTTGTCTGGATACC--CTCTAC
gi|2 : AAATCAAACGCATTTGTAACTGT--TTTGAATCGAATAATTCTATTTGTTTAAAGG-TTATTTATTAT---TTGAAAACGCGTGTCTTTGTTT-AAACATAAATTGAACTTCCAAAATAAA-C---------ACT-GAAGTGTTATTTTACTCTTAAAACGTA--CACTTA-------TGACAA-TAGAAAACAGACGTGTTA---TTAACCGC-TATAAGAGAAGGAAAATCACCAACAGTGAAATGCGGTTAAACAC-A-ATTTTTTACTAGATTAATAACTTTTA-TTTCAGTGAAAC-ATACACCGATCGAAAGCTGAACTATTATCTGATCGAGTGATGT-------TTACAT-AGTAATAGAAACTAGCGTAACTACGGAGAATTAAGCATTTA-TTAACGGGCATTCCTTCGCA-AAAACGG------CGAAAATTACCCACAACCATTTCG-TACAGTACTGTAGTAGCTAGTGAAATCGCTGATT-----------AAACAACATGAATG------ATAAACGTATAATTAGATT-AGT-----AAAGTAT-AAAAATAAAAGAAAACAGCGTT--ATTAACTTAAGTAAAATAGAAAAAAATAGATGTTAAATAACATAGA-TATTAAA-CATGATGAACA---ACATATCATTTATGTCAATTACAAAATAGGCTTCATCTTTTATTAAA-AATGTAAA----CTACGCAAATC--AAGTTATAATTGAAACAATGACCGATCGGTGGGCCGTGTTCTA-ACAAAATCAAAAG-AAAATTTTATTATTTGTAAATGCGAATAAATTAAGAAAAATAAGCATTAATTTAAGGCAATATGCGGTTGCAAATCACGCGTCACGGAAACAAGAATTAGCCGTGGCGCTTATAATATCAATCACTACTTCTAAGTCAGTTAAATAACTT-TATACTCGTTACTCGCATACTGCTACGT-TTTCCATTTATTC----A--------------TTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTATGTTCATTAACAGTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTGTATTTACCGGATAGTTTTATTCC-TATACTTTTTGCATACTATAAAACTTCCTTTTATTTAAGTGTTCTGACACCAGGCTTAAACTTAGAAACGTTTCTTATCAAAATAAAGTTGCATGTAATAATGTTTCTTGCAATTTATTATTTCCATTCCGTA--TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTATTGTGTGCGAGGTATAACATTCTTAGTTTGAACAGGTGAACATATCCATAATATATGTTTACATTTTATTAAATGACATATTACTATTTATGACG
gi|3 : AAAATCACACGCATTTGTTACTGT--TTT-AATCGAATAATTCTATTTGTTAAAAGG-TTATTAATCAT---TTGAAAATGCGTGTC----TTT---------GTC--AC-------------C--C--C---ACT-GGAGTGTTATTTTACTCTTAAAACGTA--CACTTA-------TGACAA-TAGAAAATAGACGTGTTA---TAAACCGC-TATAATAGAAGGAAAATCACCAAAAGTGAATCACGGTTAAACAC-A-ATTTTA-ACTAAATTAATAACTGTTA-TTTTAGTGAAAC-GTACACCGATCGAAATCTGAACTATTACCTGATCGAGTGACGT-------TAACAT-ATTAATATGAACTGGCGTAACTACGGAGAATTAAGTATTTA-TTCACAAGCACTCCTTCGCA-AAA-CGG------CGAAAAATACCCACAACCATTTCATTACAGTATTGTAGTAGCTAAAGAAATCGCTGATTAACTTTTTTTGAAACAACATGAATG------ATAAACGTATACTTAGATT-AGT-----AAAGTAT-AAACATAAAAGAGAACAGCGTT--ATTAACTTTAGTAAAATAGAAAATT-TACATGTTGAATAACATAGAGTATAAAAACATGATGGACA---ACATACCATTTATGTAAATTGCAAAATAGGCTTCATCTTTTATTAAA-AATATAAA----CTACACATACT--AAGTTATACTTGAAACAATGACCGATCGGTGGGCCGTGGTCTT-ACAAAATCTAAAGAAAAATTTAATAATTTGTAAATGCGAATAAATTAAGAAAAATAAGCATTGATTTAAGGCAATATGCGGTTGCATATCACGCGTCATGGAAACGAGAATTAGCCGTGGCACTTATAATATCAATCACAATTTCTAAGTCAGTTAAAT-GCTT-CATTCTCGTTAC-AACATACTGCTACAT-
gi|4 : AACCACACGCATTTGTTACTGT--TTTGAATCGAATAATTCTATTTGTTTAAAGG-TTATTAATCAT---TTGAAAACGCGTGTCTTTGTTT-AAACATAGGATGAACTGGTAAAA--AA-C--C--C---ACT-TGAGTGTTAATTTACTCTTAAAACGTA--CACTTA-------TGACAA-TAAAAAATAGACGTGTTA---TTAACCAC-TTTAAGAGAAGGAAAATCACCAACAGTGAATCGCGGTTAAACAC-A-ATTTTT-ACTAAATAAATAACTTTTA-TTTCAGTGAAAC-ATACACAAATCGAAAGCTGAATTATTACCTGATCGAGTGATGT-------AAACAT-TTTAATAGAAACTGGTGTAACAACGGAGAATTAAGCATTTA-TTCACGGGCATTCGTTCGCA-AAA-CGG------CAAAAAATACTCACAACCATTTCA-TACAGTAATGTAGTAGCTAGTGAAATCGCTGATT-----------AAACAACATGAATG------ATAAACGTAAAATTAGATT-GGT-----AAAGTAT--AAAATAAAAGAAAACAGCGTT--ATTAACTTTAGTAAAATAGAAAAAT-TAAATGTTGAATAACATAGA-TAT-AAAACATGATGAACA---ACATATCATATATGCAAATTACAAAATAGACTTCATCTTTTATCAAC-AATGTATA----CTACACAAATC--AAGTTATAATTGAAACAATGACCGATTGGTGGCCCGTGTTCTT-ACAAAATCAAAAC-AAAATTTAATAATTTGTAAATGCTAATTAATTAAGAAAAATAAGCATTATTTTAAG----------------------GCGTCACTGAAACAAGAATTAGCCGTGGCGCTTATAATACCAATCACTACTTCTAAGTCAGTTAAATAACTT-TATACTCGTTAA-AGCATACTGCTACAT-TTT
gi|5 : AAAATCACACGTAATTGT-AGTGTAGTC---ATTGACTAATTGTATTTGTTTAAATG---ATTAATTATATTTTAAAAAAATAC-----TATTT-A--------TTAAAAAGGCAAAG-CAG-C--C--CGTCAC-----GTGTTCTTTAACTGTTAAAACATATACACTTAAGCTTATTAATAA-TAAGAA---------TTA---TTAACCGCACAGAATGTACGAAAAACCACCAACAGTGAATCGCTGTTCAACACCA-GTTTT------GGTTTATA--TCGTAGTTTTA-TAAAACCATACACAGATCGAGAGCTGAATTCTTTATTGAGTGAATAATGA-------TAACATGACCAAT-TTAACTGACAT-------GATAATTAAGCCTTTA-TCGATTGGCAATTCTTTATACAAA-CGGTTTCTATGTAAAACA---ATAGCAATTTTA-TATGGTACTGT------------AATCGCTATTT-----------AAACAATATAAATACATTTTACAAA--TAAAATTATATTAAGTTTATCAAAGTAT-CAAAATACAAGGAAACA--GTTGGATTAACTTTAGT----TAG-----T---GAT-TTAAACAAAACAGA--ACTTAAACAT-ATGCGCATTTTTACATTATCTATGTAAATTACAAAATGTGCATCATC-----TTAAATAATG-ATATTTTCCACATAAATTAAAAGTTATAATTGAAACAACGACATGTCGG-AATCCATATTTTT-AAGAAATTTAATGTACAGTTCATT--TTTCTTAATTAGCATAACGTCAAAAAAAT--------ATTCAAGGCAATA---------A-ATCACGCGTTACGGAAATTGAAATTTGTCACGCCGCGAATAA-ATCAATTAAT-CTT-TAAATTAATTACAT-ACTTAAATATTCAATAC-AGCATACTGTTATGTATTTTTATT
gi|6 : TGATGT-------TAACAT-ATTAATAGAAACTGGCGTAACTACGGAGAATTAAGCATTTA-TTCACGGGCATTTCTTCACA-AAA-CGG------CGAAACATACCCACAACCATTTCA-TACAGTATTGCAGTAGCCAGTGAAATCGGTGATT-----------AAACAACATGAA-G------ATAAACGTATAATTAGATT-AGT-----AAAGTAT-AAAAATAAAAGAAAAAAGCGTT--ATTAACTTAAGTAAAATAGAAAAAT-TAGATGTTGAATAACATAGA-TATAAAAACATGATGAACA---ACATATCATTTATGTAAATTACAAACAAAGCTTCATCGTTTATCAAA-AATATAAA----CTACACAAATC--AAGTTATACTTGAAACAATGAC----CGGTGGGTCGTGTTCTTAAAAAAATCAAAAGAAAAACTGAATAATTTGTAAATGCAAATAAATTAAGAAAAATAAGCATTAATTTAAGGCAATATGTGGTTGCATATCACGCGTCACGGAAACGAGAATGAGCCGTGGCGCTTATAATATCAATCACTATTTCTAAGTCAGTTAAAT-GCTT-TA-ACTCGTTAC-AGCATACTGCTACAG-TTTCCATTCATTCATTCA--------------TTCAT
gi|7 : AAAGCATACGCATTTGTTACTGT--TTTGAATCGAATACTTTTATTTGTTTAAAGG-TTATTAATCAT---TTGAAAACGCGTGTCTTTGTTTTAAACATAGGTTGAACTGGCAAAA-AAA-A--C--C---ACT-GGAGCGTTATTTTACTCTTAAAACGTA--CACTTA-------TGACAA-TAGAAAAGAGATGTGTTA---TAAACCGC-TATAATGGAAGGAAAATTACCAACAGTGAATCACGGTTAAACAC-ATTTTTTT-ACTAAATTCATAACTGTTA-TCTTAGTGAAAC-ATACACCGATCGAAAGCTGAACTATTACCTGATCGAGTGATGT-------TAACAT-ATTAATATGAACTGGCGTAACTACGGAGAATTAAGCATTTATTTTACGGGCACTCCTTCGCA-AAA-CGG------CGAAAAATACCCACAACTATTTCA-TACAGTATTGTAGTAGCTAGTTGAATCGCTGATT-----------AAACAACATGAATG------ATAAAAGTATAATTTAATT-AAT-----AAAGTATAAAAAATAAAAGAAAACAGCGTT--ATTAACTTTTGTAAAATAGAAAATT-TAGATGTTGAATAACATAGA-TATAAAAACATGATGAAAA---ACATAT
gi|8 : TGTGC-TGTCAGAA------TTAGAAAATTGAAT-TGA-TCTGAAG---TG--AATA-TATAGTAGTCATATT------CATATAATAATTGGGAT-ATTTTCTTTAATATGTTTATGAATTAATCATTGTATTGATGCAACAAGGGGTTTTTGTCCACGTGTACATTTTTTGACCAAGGAGCTTTTGTCCATGGTGCTTTTGTCCGGATACCTTCTCTACTATCCCTATTTCGTTACTCAATTTTCTCCTCTTTGTTATCATTTTTTTTTACTGTTCTGTTATTTTGTACTCTTCATCCATTTCCAAATTTAGCTCTCTCTCTTATCTTAAACTCCGC
gi|9 : TATAATTTTCTTAGTCTAAACAGAGAAACACA--CAGAACAAAT--TTGTCTTTTATAAAATGATATATTGATATTTAT------TGTA--TGT-AGAATAGGCCTCAGAAAA-TGGTTATGATTTTGAAACTTTGC-AATA-TAT-GT-GT-ATGTT------TATATAgctctctttctttcgctctctttctctttctgtcttatctcaaactcatctctatctct
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TGGGGGCTTTACTTTTTTTCGTCTAAATAGGCGGACAAACCCTAACATGTTTAATTTCACAAAATGGTATATCAATATTTACTAGATGTAAAAGCATATGAGATGAAACTTTGCTATATATTTATATGTTATAATATGTCA