lowQualScore : 22222222222222222222222222222 11111 222222222222222222222222222222222222222222222222 2222222222222222222222222222222222222 1111111111 22222222222222222 111111111 333333333333333333333333333 11111111111111111111111111111 1111111111111 333333333333333333333333 11111111
lowQualScore : 55555 1 1 22222222222222222222222222222 1 00000 4 444444444 1 55555555 11 1 11 777 000000000000000000000000000000000000000000000000 1 11 33 4 1 1 1 5555555555555555555555555555555555555 6666 1 1 22 1 4 1 1 4444444444 1 55555555555555555 555555555 444444444444444444444444444 1 55555555555555555555555555555 6666666 1 333 1 1111111111111 333 1 444444 1 1 6666 4 1 888888888888888888888888 8888 44444444 1 4
lowQualScore : 00000 5 6 5 66666666666666666666666666666 7 00000 0 6 777777777 7 55555555 6 22 6 6 5 22 000 6 6 777777777777777777777777777777777777777777777777 7 6 22 22 0 7 5 6 5 6 0000000000000000000000000000000000000 3333 5 6 6 7 33 7 6 6 0 5 5 3333333333 5 77777777777777777 6 111111111 6 6 6 6 6 6 222222222222222222222222222 6 5 4 11111111111111111111111111111 4 0 5555555 2 5 6 555 0 5 2 0000000000000 555 6 4 1 666666 5 5 2222 0 5 555555555555555555555555 5555 55555555 7 6 0
lowQualScore : ..... . . . ............................. . ..... . . ......... . ........ . .. . . . .. ... . . ................................................ . . .. .. . . . . . . ..................................... .... . . . . .. . . . . . . .......... . ................. . ......... . . . . . . ........................... . . . ............................. . . ....... . . . ... . . . ............. ... . . . ...... . . .... . . ........................ .... ........ . . .
lowQualScore : 00000 0 0 0 00000000000000000000000000000 0 00000 0 0 000000000 0 00000000 0 00 0 0 0 00 000 0 0 000000000000000000000000000000000000000000000000 0 0 00 00 0 0 0 0 0 0 0000000000000000000000000000000000000 0000 0 0 0 0 00 0 0 0 0 0 0 0000000000 0 00000000000000000 0 000000000 0 0 0 0 0 0 000000000000000000000000000 0 0 0 00000000000000000000000000000 0 7 0000000 5 5 0 000 8 5 5 0000000000000 000 0 0 5 000000 5 0 0000 0 0 000000000000000000000000 0000 00000000 0 0 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCATGTATACGTATAATTCTTATAATATTTTTATGAATACTATTTGATATTGTACCATATGGCTATAATAAAAAAATTTAGAAGTTTTTGTCAAAAGTAATTAATACAGATAT-----TTAGA-AAATAATCATTTGTAT-TAGACTGGCCTTTGTTTTATCAAACTGTTCG-GTAGATAAGTTTACAATAATGGAGTGTCACATATTATGTTGTACATCCTGGACTGGAAAGTAATATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAATGA--GTTAAAAGCAGTTA---TATCAGTAAATAAG-----TAAAT--GTTACATAAATTCTATAAATCAAAATAGATAATGTTGCATAGTCTTTCAGTGAGAT-AATATATATTATACGAGTATGTAACATACAACATATATGTCTAT-AT--------TGAATACTTC-A-------ATCCCA-TTAGTTTAT--AACGCACTGAGGGCGGGTTTTTGTTTCACCAACACTTTCTTTGGTTTACTGTCTTAACTGATTTTAGAATGATGGTTCGTCTA-TCTGTAACAAGTGGGACTTAAATGTACTGCAATTCTACAGAATCAAGTGCAAAAACACGGTTACCTAGAATATA------TA---------TTCCTTGAGGTATTAGTG--------TGAGTTTGTATTGGTGAGGTGTTAGCCCGCTCTCCGTTTATATGGTTTTTGTTTGTGAAGATATTTTTCACATACAGATTAAAAAGCAAACTTNCCTTGCTAGTAAAAATTTAAAAAAGAATTTTTAATGTAATTGTTAGNACAAACTGAAACACATCGGTTTGTACAGTTATTGTATAACTTACCGGTATTTAACACGAATAANAAAATATATTTGAAAAAAAATGTTGTATCANAATGTTTGTATAAACTGCATCATAATTTGCAATTTTTTTTACNTNTGATTTTGNNAAACTGTTACAATGAAATAAAAAAAATACAAAACAATATTAGCTTTATATTGTGAAATT-AAAAAAAATGCAA------------------------TTGTTAAACTAT----CTACTATACTTTGTATAACAA--------ATATACATATTCATTTAGGTCAAAACAATGCCGTCATCACAATGAAATGGTATATGGCGC-CTTTATGATCTTGGTCAT
Reference ( gi|1 ) : CTGCACTTAAAAACTTGAATAATACAGAGACGGTTTTTTCCCCAAATTTACTTGCATTAATTTTATTCATCCTATGTCGCACTATAATGAGTAAGGCCTTAGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTGTCACCATGTA-----ATAATTCTTATAATATTTTTATGAATAATATTTAATATTGTACCATATTGCTATA----------TTAGAAATTTCT-------GTAATTAATACAGTTATTATGATTAGATAAATAATCACTTGTATATAAACAATCCTTAGTTTTATCAAAACGTACAAGTAAATAAGCCTATAGTCATGAGGTGTCACATAT---GTTGTACATCTTGGACTGGAAGGTAATATTAGTGCCAGAATGTTTGCACAGTAGTTGTCACAAATTGGGTACATCCTGTATAGTGTAAATGCTAAGTTGTTTGAGTGATGGGTATAAGTAGTTAATGAATGGAACTGACCAATGAAAGAAAGGATTCATTAGGTTGTTAGGGAGTTTAAAGACTATGAGAGAGATGACTGAGTGATACTAAATATGGGAAGAGTCTGAGAAGAAAGAGTGTGAAATATGAAAGTATGTAGGTAGTAAGAAAAGGGAGATTGAAAGGTTAAGTAAGGAAAAAGAGATTGAGGGATTAAAAGGAGATAGTAGGTTGAGAAATGAAGGTTAAGA-TAGTTAGGACATAAGGAGA-AAGAAAGTTAAATAGGGAACATAAATTCTTTAAATCAAAACAGATAATACTGCATAGTCTTTCTTTGAGATAAAAATATAGTATACAAGTATGTAACATACAACATCTATGTTTATGATGGTTATGATGAATACTTCTATGAAGTTATCTTATTTAGTTTTTTCAACGCACTGAGTGTGGGTTTTTGTTTCACCAACACCTTCATTGAATTACTGTCTTAACTGATTTTAGAATGTTGGTTTGCCTATTCTGTAACCAGTTGGAC----AT---TTGCAATTCTACAGAATCAAGTGCAAAAACACTGTTACCTAGAATATATTTCTGTAAACTTATGTTTCCTTGAGGTACTAGTGCGAATGACCGAGTTTGTGTTGGTGAGGCGTTAGCCTGCTCTCTGCTCATATGGTTTTTGACTG----AAT----------------TTAAAGAGAAAACTTTCCTTGCTAGTAAATGTTT---------TTTTTCTCTTAAT-GTTAGAACAAACTGAAACACATTGGTTTGTACAGTTATTGTATAACTTACCGGTATTTGAT-------ACAAAATACAT---AAAAAAAATGTTATATCAGA-------------CTACATCATAATTTGTA---TTTTCTACATTTGATTTTGTTTAA-TGTTACAATGAAATAAAAAAAATACCAAA-AA-ATTAGCTTTATATTGTGAAATTGAAAAAAAATCCAATGGTTATTATAAGCCAGTACAGCATTGTTAAACTATAGATCTACTATACTTTGTATAACAACTTAGTGAATATTCATATTCATTTAGATCAAAACAATGCCGTCATCACAATGAAATGGTATATGGCGCACTTTATGATCTTGGTCAT
gi|10 : ACCATGTA-----ATAATTCTTATAATATT
gi|8 : ttatattagactggcctttgttttatcaaactgttcggtagataagtttacaataatggagtgtcacatattatgttgtacatcctggactggaaagtATGTATACGTATAATTCTTATAATATTTTTATGAATACTATTTGATATTGTACCATATGGCTATAATAAAAAAATTTAGAAGTTTTTGTCAAAAGTAATTAATACAGATAT-----TTAGA-AAATAATCATTTGTtg
gi|10 : TTATAT-TAGACTGGCCTTTGTTTTATCAAACTGTTCG-GTAGATAAGTTTACAATAATGGAGTGTCACATATTATGTTGTACATCCTGGACTGGAAAGTAATATTA
gi|6 : GAAATGA--GTTAAAAGCAGTTA---TATCAGTAAATAAG-----TAAAT--GTTACATAAATTCTATAAATCAAAATAGATAATGTTGCATAGTCTTTCAGTGAGAT-AATATATATTATACGAGTATGTAACATACAACATATATGTCTAT-AT--------TGAATACTTC-A-------ATCCCA-TTAGTTTAT--AACGCtaagaattattacatggttg
gi|3 : AACACACTGAGGGCGGGTTTTTGTTTCACCAACACTTTCTTTGGTTTACTGTCTTAACTGATTTTAGAATGATGGTTCGTCTA-TCTGTAACAAGTGGGACTTAAATGTACTGCAATTCTACAGAATCAAGTGCAAAAACACGGTTACCTAGAATATA------TA---------TTCCTTGAGGTATTAGTG--------TGAGTTTGTATTGGTGAGGTGTTAGCCCGCTCTCCGTTTATATGGTTTTTGTTTGTGAAGATATTTTTCACATACAGATTAAAAAGCAAACTTACCTTGCTAGTAAAAATTTAAAAAAGAATTTT--------T-GTTAGTACAAACTGAAACACATTGGTTTGTACATTTATTGTATTACTTACCGGTATTTGAg
gi|2 : CTTTCCTTGCTAGTAA---TTT---------TTTTTAATGTAATTATTAGAACAAACTGAAATACATTGGTTTGTACAGTTATTGTATAACTTACCGGTATTCAAC-------AAAAAA-ATAT---AAAAAAA
gi|4 : ATCGGTTTGTACAGTTATTGTACAACTTACCGGTATTTAATACGAATAACAAAATATATTTGAAAACAAAcaaaagaactcagagttaataaatttactaaagaacctgaaaagtttgcctcttattaatttacaaatatgaaaatattatatcagaatgtttgtataaactgcatcataatttgcaattttttttacttctgattttgtgaaactgttacaatgaaataaaaaaatacaaaacaatattagctttatattgtgaaattaaaaaaaatgcaattgttaaactatctactatactttgtataacaaatatacatattcatttaggtcaaaacaatgccgtcatcacaatgaaatggtatatggcgcctttatgatcttggtcattgaaaatgattcaattagagctgtatgttttgactgatagaccggttaccattgtctaattattaacaactatggcagggagacagtgtgacctttctaagataaagggtcagaacagtgcaaaaagaatagcgttttctttgatatagactgtttaagtaacccaacgaaaattcatata
gi|4 : AGAAATGTTGTA-CATA-------------CTACATCATAATTTGTA---TTTTTTACATATGATTTTGATAAACTGTTACAATGAAATAAAAAAAAacaaaaacaacaacaacaaaactcagagttaataaatttactaaaaaatctggaaaatttatctcttaatttacaaatatgcaaatgttatatcagaaatgttgtacatactacatcataatttgtattttttacatatgattttgataaactgttacaatgaaataaaaaaaact
gi|2 : atcggtttgtacagttattgtacaacttaccggtatttaatacgaataacaaaatatatttgaaaacaaaacaaaaacaacaacaacaaaactcagagttaataaatttactaaaaaatctggaaaatttatctcttaatttacaaatatgcaaatgttatatcAAAATATTATATCAGAATGTTTGTATAAACTGCATCATAATTTGCAATTTTTTTTACTTCTGATTTTGTGAAACTGTTACAATGAAATAAAAAAA-TACAAAACAATATTAGCTTTATATTGTGAAATT-AAAAAAAATGCAA------------------------TTGTTAAACTAT----CTACTATACTTTGTATAACAA--------ATATACATATTCATTTAGGTCAAAACAATGCCGTCATCACAATGAAATGGTATATGGCGC-CTTTATGATCTTGGTCATct
12 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|5 ): CACGACTGATAGGCCAGTTTCTATTGGCTATTCATTAAAAGTCAGGACATCAGATAGGGTCTTGTGTCAAATGAACATTCAAAACAAAAGTGTCAGAACAGTGCAAAAAAGATGTTTGTCTTTGATATCAACTGTTTAAGAAATCCAATGAACATTCAAACTCAAAACGTGAAGATGCAAGATGTAACAT
Unaligned ( gi|7 ): ACCTTAATCATTGGAAAATGCTTCAAATGACTTTTTATGTTTTTGCTGATAGCCTGACAGTGAAAATATATGTACCACTGACAAATAATTAATGAACATGACATCAGACAGGGCTTTGTGGTATGTGAGCATTCAAAATAAAAGGGTCAGAACAC
Unaligned ( gi|9 ): AATGTTTTGATTGATATTCCAGTTTCCATTGGCCTATCATTAGAAAACATGACGTAAGCGAGGTTTTGTGGTTCCTGAACTATCAGAACAAGTGGATCAGACAAACACAAAGTTTTCTAGATATCCA
Unaligned ( gi|11 ): AAGACTGGGTTTGTGACATGTTAACTACCAACACAATAGTGTCAGAGCTGAGTGCAAACAAGCAAATGTGTTTCTTTGATACAAACTTTTTAAGAAACATCACAAACATTTTAACCTCTAA
Unaligned ( gi|12 ): AGACTGGGTTTGGGACATGTTAACTATCAACACAATAGTGTCAGAGCTGAGTGCAAACAAGCAAATGTGTTTCTTTGATACAAACTTTTTAAGAAACATCACAAACATTTTAACCTCTAA
Unaligned ( gi|13 ): CATAAACATGATGTCAGGCAAGGTTTGTTAAACATGAATATTCAAATCAAACGCTTCAGAACAGTGCAAAATGAATTCTGTTTTTTTTTAATGATACAAATTGT
Unaligned ( gi|14 ): TAATTAAAAGTCAGGGTGTGATTCTTGCTTTTGTGGCATGTCAACTATCAAAATAAAGGGATCAGAGCAGTGTAAAAAGATGTTTTTTTCTTTGA
Unaligned ( gi|15 ): TTTTCACTGACTAATCATTGATAATCATGACACAAAGCAAAGCTTTGTGAACTACCAAAACAAAAGGGTCAGAACAGA
Unaligned ( gi|16 ): CAGAACAGTGAAAAAGGACACTTTGTTTTTCTTTGATATGGACTGTTTAAAAAGTGACATGAACAGTTGACACT
Unaligned ( gi|17 ): TGCTATACCGGTTTTCATTGGCTTATCATAAAGAAACATGGCGTCGTGCGGGGCTTTATAAACGGTCAAAACA
Unaligned ( gi|18 ): TTGATACTGACTGTTTAAGAAACATCACCAACAGTTAAAACTCTAACT
Unaligned ( gi|19 ): TTTTAAATAGTGTCTCCTTTATGTTTGTATA
Alignments
lowQualScore : 11111111111111111 111111111111111111111111
lowQualScore : 22222 4444444444 3333333 55555 2 2 2 222 22 1 333 1 55555 22 2 77777777777 777777777 2 11 2 222222222 11111111111111111 77777777 66666666666666666666666 111 8888888888888888888888 4444444444 2222 2222 333333333333333 333 1 1 2 999999999999999999999999 4444 77777777 2
lowQualScore : 66666 2 2 2222222222 2222222 4 00000 0 0 444 4 2 4 0 3 111 77 5 555 2 3 5 00000 77 77 4 66 4 0 3 3 44444444444 666666666 0 4 88 2 4 4 4 0 3 2 777777777 2 99999999999999999 22222222 4 22222222222222222222222 2 1 999 8888888888888888888888 1 2 6666666666 2222 1111 6 888888888888888 0 0 777 1 1 22 6 7 3 5 5 0 2 3 222222222222222222222222 2222 22222222 4 0
lowQualScore : ..... . . .......... ....... . ..... . . ... . . . . . ... .. . ... . . . ..... .. .. . .. . . . . ........... ......... . . .. . . . . . . . ......... . ................. ........ . ....................... . . ... ...................... . . .......... .... .... . ............... . . ... . . .. . . . . . . . . ........................ .... ........ . .
lowQualScore : 55555 5 5 5555555555 5555555 0 00000 0 0 555 0 5 0 0 0 555 55 0 000 5 0 5 00000 55 00 0 55 0 0 0 0 55555555555 000000000 0 0 33 5 0 0 0 0 0 5 555555555 5 55555555555555555 55555555 0 55555555555555555555555 5 0 000 3333333333333333333333 0 0 0000000000 0000 2222 0 333333333333333 7 7 777 0 0 00 7 3 0 0 5 0 5 0 555555555555555555555555 5555 55555555 0 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCATGTATACGTATAATTCTTATAATATTTTTATGAATANTATTTGATATTGTACCATATNGCTATAATAAAAAAATTTAGAAGTTTCTGTCAAAAGTAATTAATACAGNTATTATGATTAGATAAATAATCACTTGTATATAGACNGNCCTTNGTTTTATCAAANCGTNCAGGTAGATAAGCCTACAGTNATGGGGTGTCACATATTATGTTGTACATCCTGGACTGGAAGGTAATATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAATGAAGGTTAAGAGCAGTTAGGACATNAGNAGATAAGAAAGTTAAATAGGNNACATAAATTCTNTAAATCAAAACAGATAATGCTGCATAGTCTTTCNNTGAGATAANAATATANTATACGAGTATGTAACATACAACATNTATGTCTATGATGGTTATGATGAATACTTCTATGAAGTTATCCCATTTAGTTTNT--AACGCACTGAGNGCGGGTTTTTGTTTCACCAACACCTTCNTTGGNTTACTGTCTTAACTGATTTTAGAATGNTGGTTCGCCTATTCTGTAACNAGTNGGACTTAAATGTACTGCAATTCTACAGAATCAAGTGCAAAAACACNGTTACCTAGAATATATTTCTGTAAACTTATGTTTCCTTGAGGTACTAGTGCGAATGACCGAGTTTGTGTTGGTGAGGCGTTAGCCCGCTCTCCGCTCATATGGTTTTTGNCTGTGAAGATATTTTTCACATACAGATTAAAGAGNAAACTTTCCTTGCTAGTAAA-GTTT---------TTTTT--C-TAATTGTTAGAACAAACTGAAACACATTGGTTTGTACAGTTATTGTATAACTTACCGGTATTTGATAC----AA-AAAATATATTTGAAAA----AAAATGTTATATCAGAA-TGTT-GTACA-ACTACATCATAATTTGTA---TTTTTTACATNTGATTTTGTTAAACTGTTACAATGAAATAAAAAAAATACNAAACAATATTAGCTTTATATTGTGAAATTGAAAAAAAATNCAATNGTTATTATAAGCCAGTACAGCATTGTTAAACTATAGATCTACTATACTTTGTATAACAACTTAGTGAATATNCATATTCATTTAGGTCAAAACAATGCCGTCATCACAATGAAATGGTATATGGCGCACTTTATGATCTTGGTCAT
Reference ( family-2402 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCATGTATACGTATAATTCTTATAATATTTTTATGAATACTATTTGATATTGTACCATATGGCTATAATAAAAAAATTTAGAAGTTTTTGTCAAAAGTAATTAATACAGATAT-----TTAGA-AAATAATCATTTGTAT-TAGACTGGCCTTTGTTTTATCAAACTGTTC-GGTAGATAAGTTTACAATAATGGAGTGTCACATATTATGTTGTACATCCTGGACTGGAAAGTAATATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAATGA--GTTAAAAGCAGTTA---TATCAGTAAATAAG-----TAAAT--GTTACATAAATTCTATAAATCAAAATAGATAATGTTGCATAGTCTTTCAGTGAGATAATA-TATATTATACGAGTATGTAACATACAACATATATGTCTAT-------AT--TGAATACTTC-----A---ATCCCATT-AGTTTAT--AACGCACTGAGGGCGGGTTTTTGTTTCACCAACACTTTCTTTGGTTTACTGTCTTAACTGATTTTAGAATGATGGTTCGTCTA-TCTGTAACAAGTGGGACTTAAATGTACTGCAATTCTACAGAATCAAGTGCAAAAACACGGTTACCTAGAATATA------TA---------TTCCTTGAGGTATTAGTG--------TGAGTTTGTATTGGTGAGGTGTTAGCCCGCTCTCCGTTTATATGGTTTTTGTTTGTGAAGATATTTTTCACATACAGATTAAAAAGCAAACTTNCCTTGCTAGTAAAAATTTAAAAAAGAATTTTTAATGTAATTGTTAGNACAAACTGAAACACATCGGTTTGTACAGTTATTGTATAACTTACCGGTATTTAACACGAATAANAAAATATATTTGAAAA----AAAATGTTGTATCANAA-TGTTTGTATAAACTGCATCATAATTTGCAATTTTTTTTACNTNTGATTTTGNNAAACTGTTACAATGAAATAAAAAAAATACAAAACAATATTAGCTTTATATTGTGAAATT-AAAAAAAATGCAATTGTT------------------------AAACT----ATCTACTATACTTTGTATAACA--------AATATACATATTCATTTAGGTCAAAACAATGCCGTCATCACAATGAAATGGTATATGGCGC-CTTTATGATCTTGGTCAT
gi|1 : ACCATGTA-----ATAATTCTTATAATATTTTTATGAATAATATTTAATATTGTACCATATTGCTATA----------TTAGAAATTTCT-------GTAATTAATACAGTTATTATGATTAGATAAATAATCACTTGTATATAAACAATCCTTAGTTTTATCAAAACGTACAAGTAAATAAGCCTATAGTCATGAGGTGTCACA---TATGTTGTACATCTTGGACTGGAAGGTAATATTA
gi|1 : ctgcacttaaaaacttgaataatacagagacggttttttccccaaatttacttgcattaattttattcatcctatgtcgcactataatgagtaaggccttaggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgtcGAAATGAAGGTTAAGA-TAGTTAGGACATAAGGAGA-AAGAAAGTTAAATAGGGAACATAAATTCTTTAAATCAAAACAGATAATACTGCATAGTCTTTCTTTGAGATAAAAATATAGTATACAAGTATGTAACATACAACATCTATGTTTATGATGGTTATGATGAATACTTCTATGAAGTTATCTTATTTAGTTTTTTCAACGCACTGAGTGTGGGTTTTTGTTTCACCAACACCTTCATTGAATTACTGTCTTAACTGATTTTAGAATGTTGGTTTGCCTATTCTGTAACCAGTTGGAC----AT---TTGCAATTCTACAGAATCAAGTGCAAAAACACTGTTACCTAGAATATATTTCTGTAAACTTATGTTTCCTTGAGGTACTAGTGCGAATGACCGAGTTTGTGTTGGTGAGGCGTTAGCCTGCTCTCTGCTCATATGGTTTTTGACTG----AAT----------------TTAAAGAGAAAACTTTCCTTGCTAGTAAATGTTT---------TTTTTCTCTTAA-TGTTAGAACAAACTGAAACACATTGGTTTGTACAGTTATTGTATAACTTACCGGTATTTGATAC-------AAAATACAT---AAAA----AAAATGTTATATCAG--------------ACTACATCATAATTTGTA---TTTTCTACATTTGATTTTGTTTAA-TGTTACAATGAAATAAAAAAAATACCAAA-AA-ATTAGCTTTATATTGTGAAATTGAAAAAAAATCCAATGGTTATTATAAGCCAGTACAGCATTGTTAAACTATAGATCTACTATACTTTGTATAACAACTTAGTGAATATTCATATTCATTTAGATCAAAACAATGCCGTCATCACAATGAAATGGTATATGGCGCACTTTATGATCTTGGTCATgtgccagaatgtttgcacagtagttgtcacaaattgggtacatcctgtatagtgtaaatgctaagttgtttgagtgatgggtataagtagttaatgaatggaactgaccaatgaaagaaaggattcattaggttgttagggagtttaaagactatgagagagatgactgagtgatactaaatatgggaagagtctgagaagaaagagtgtgaaatatgaaagtatgtaggtagtaagaaaagggagattgaaaggttaagtaaggaaaaagagattgagggattaaaaggagatagtaggttgagaaatgaaggttaagatagttaggacataaggagaaagaaagttaaatagggaacataaattctttaaatcaaaacagataatactgcatagtctttctttgagataaaaatatagtatacaagtatgtaacatacaacatctatgtttatgatggttatgatgaatacttctatgaagttatcttatttagttttttcaacgcactgagtgtgggtttttgtttcaccaacaccttcattgaattactgtcttaactgattttagaatgttggtttgcctattctgtaaccagttggacatttgcaattctacagaatcaagtgcaaaaacactgttacctagaatatatttctgtaaacttatgtttccttgaggtactagtgcgaatgaccgagtttgtgttggtgaggcgttagcctgctctctgctcatatggtttttgactgaatttaaagagaaaactttccttgctagtaaatgttttttttctcttaatgttagaacaaactgaaacacattggtttgtacagttattgtataacttaccggtatttgatacaaaatacataaaaaaaatgttatatcagactacatcataatttgtattttctacatttgattttgtttaatgttacaatgaaataaaaaaaataccaaaaaattagctttatattgtgaaattgaaaaaaaatccaatggttattataagccagtacagcattgttaaactatagatctactatactttgtataacaacttagtgaatattcatattcatttagatcaaaacaatgccgtcatcacaatgaaatggtatatggcgcactttatgatcttggtcat
gi|10 : ctgcacttaaaaacttgaataatacagagacggttttttccccaaatttacttgcattaattttattcatcctatgtcgcactataatgagtaaggccttaggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgtcaccatgtaataattcttataatatttttatgaataatatttaatattgtaccatattgctatattagaaatttctgtaattaatacagttattatgattagataaataatcacttgtatataaacaatccttagttttatcaaaacgtacaagtaaataagcctatagtcatgaggtgtcacatatgttgtacatcttggactggaaggtaatattagtgccagaatgtttgcacagtagttgtcacaaattgggtacatcctgtatagtgtaaatgctaagttgtttgagtgatgggtataagtagttaatgaatggaactgaccaatgaaagaaaggattcattaggttgttagggagtttaaagactatgagagagatgactgagtgatactaaatatgggaagagtctgagaagaaagagtgtgaaatatgaaagtatgtaggtagtaagaaaagggagattgaaaggttaagtaaggaaaaagagattgagggattaaaaggagatagtaggttgaTTATAT-TAGACTGGCCTTTGTTTTATCAAACTGTTC-GGTAGATAAGTTTACAATAATGGAGTGTCACATATTATGTTGTACATCCTGGACTGGAAAGTAATATTA
gi|2 : CTTTCCTTGCTAGTAA---TTT---------TTTTTAATGTAATTATTAGAACAAACTGAAATACATTGGTTTGTACAGTTATTGTATAACTTACCGGTATTCAAC------AAAAAAATATA----AAAA----AAtaagaattattacatggttg
gi|2 : ATTTACAAATATGAAAATATTATATCAGAA-TGTTTGTATAAACTGCATCATAATTTGCAATTTTTTTTACTTCTGATTTTGTGAAACTGTTACAATGAAATAAAAAAA-TACAAAACAATATTAGCTTTATATTGTGAAATT-AAAAAAAATGCAATTGTT------------------------AAACT----ATCTACTATACTTTGTATAACA--------AATATACATATTCATTTAGGTCAAAACAATGCCGTCATCACAATGAAATGGTATATGGCGC-CTTTATGATCTTGGTCATcaaaagaactcagagttaataaatttactaaagaacctgaaaagtttgcctcttattaatttacaaatatgaaaatattatatcagaatgtttgtataaactgcatcataatttgcaattttttttacttctgattttgtgaaactgttacaatgaaataaaaaaatacaaaacaatattagctttatattgtgaaattaaaaaaaatgcaattgttaaactatctactatactttgtataacaaatatacatattcatttaggtcaaaacaatgccgtcatcacaatgaaatggtatatggcgcctttatgatcttggtcattgaaaatgattcaattagagctgtatgttttgactgatagaccggttaccattgtctaattattaacaactatggcagggagacagtgtgacctttctaagataaagggtcagaacagtgcaaaaagaatagcgttttctttgatatagactgtttaagtaacccaacgaaaattcatata
gi|3 : ctttccttgctagtaattttttttaatgtaattattagaacaaactgaaatacattggtttgtacagttattgtataacttaccggtattcaacaaaaaaatataaaaaaacaaaagaactcagagttaataaatttactaaagaacctgaaaagtttgcctcttatta--AACACACTGAGGGCGGGTTTTTGTTTCACCAACACTTTCTTTGGTTTACTGTCTTAACTGATTTTAGAATGATGGTTCGTCTA-TCTGTAACAAGTGGGACTTAAATGTACTGCAATTCTACAGAATCAAGTGCAAAAACACGGTTACCTAGAATATA------TA---------TTCCTTGAGGTATTAGTG--------TGAGTTTGTATTGGTGAGGTGTTAGCCCGCTCTCCGTTTATATGGTTTTTGTTTGTGAAGATATTTTTCACATACAGATTAAAAAGCAAACTTACCTTGCTAGTAAAAATTTAAAAAAGAATTT---------TTGTTAGTACAAACTGAAACACATTGGTTTGTACATTTATTGTATTACTTACCGGTATTTGAtgaaaatgattcaattagagctgtatgttttgactgatagaccggttaccattgtctaattattaacaactatggcagggagacagtgtgacctttctaagataaagggtcagaacagtgcaaaaagaatagcgttttctttgatatagactgtttaagtaacccaacgaaaattcatata
gi|4 : ATCGGTTTGTACAGTTATTGTACAACTTACCGGTATTTAATACGAATAACAAAATATATTTGAAAA----CAAA
gi|4 : AAATGTTATATCAGAAATGTT-GTACATACTACATCATAATTTGTA---TTTTTTACATATGATTTTGATAAACTGTTACAATGAAATAAAAAAAAacaaaaacaacaacaacaaaactcagagttaataaatttactaaaaaatctggaaaatttatctcttaatttacaaatatgcaaatgttatatcagaaatgttgtacatactacatcataatttgtattttttacatatgattttgataaactgttacaatgaaataaaaaaaact
gi|6 : atcggtttgtacagttattgtacaacttaccggtatttaatacgaataacaaaatatatttgaaaacaaaacaaaaacaacaacaacaaaactcagagttaataaatttactaaaaaatctggaaaatttatctcttaatttacaaatatgcGAAATGA--GTTAAAAGCAGTTA---TATCAGTAAATAAG-----TAAAT--GTTACATAAATTCTATAAATCAAAATAGATAATGTTGCATAGTCTTTCAGTGAGATAATA-TATATTATACGAGTATGTAACATACAACATATATGTCTAT-------AT--TGAATACTTC-----A---ATCCCATT-AGTTTAT--AACGCct
gi|8 : ATGTATACGTATAATTCTTATAATATTTTTATGAATACTATTTGATATTGTACCATATGGCTATAATAAAAAAATTTAGAAGTTTTTGTCAAAAGTAATTAATACAGATAT-----TTAGA-AAATAATCATTTGTg
12 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): CACGACTGATAGGCCAGTTTCTATTGGCTATTCATTAAAAGTCAGGACATCAGATAGGGTCTTGTGTCAAATGAACATTCAAAACAAAAGTGTCAGAACAGTGCAAAAAAGATGTTTGTCTTTGATATCAACTGTTTAAGAAATCCAATGAACATTCAAACTCAAAACGTGAAGATGCAAGATGTAACAT
Unaligned ( gi|7 ): ACCTTAATCATTGGAAAATGCTTCAAATGACTTTTTATGTTTTTGCTGATAGCCTGACAGTGAAAATATATGTACCACTGACAAATAATTAATGAACATGACATCAGACAGGGCTTTGTGGTATGTGAGCATTCAAAATAAAAGGGTCAGAACAC
Unaligned ( gi|9 ): AATGTTTTGATTGATATTCCAGTTTCCATTGGCCTATCATTAGAAAACATGACGTAAGCGAGGTTTTGTGGTTCCTGAACTATCAGAACAAGTGGATCAGACAAACACAAAGTTTTCTAGATATCCA
Unaligned ( gi|11 ): AAGACTGGGTTTGTGACATGTTAACTACCAACACAATAGTGTCAGAGCTGAGTGCAAACAAGCAAATGTGTTTCTTTGATACAAACTTTTTAAGAAACATCACAAACATTTTAACCTCTAA
Unaligned ( gi|12 ): AGACTGGGTTTGGGACATGTTAACTATCAACACAATAGTGTCAGAGCTGAGTGCAAACAAGCAAATGTGTTTCTTTGATACAAACTTTTTAAGAAACATCACAAACATTTTAACCTCTAA
Unaligned ( gi|13 ): CATAAACATGATGTCAGGCAAGGTTTGTTAAACATGAATATTCAAATCAAACGCTTCAGAACAGTGCAAAATGAATTCTGTTTTTTTTTAATGATACAAATTGT
Unaligned ( gi|14 ): TAATTAAAAGTCAGGGTGTGATTCTTGCTTTTGTGGCATGTCAACTATCAAAATAAAGGGATCAGAGCAGTGTAAAAAGATGTTTTTTTCTTTGA
Unaligned ( gi|15 ): TTTTCACTGACTAATCATTGATAATCATGACACAAAGCAAAGCTTTGTGAACTACCAAAACAAAAGGGTCAGAACAGA
Unaligned ( gi|16 ): CAGAACAGTGAAAAAGGACACTTTGTTTTTCTTTGATATGGACTGTTTAAAAAGTGACATGAACAGTTGACACT
Unaligned ( gi|17 ): TGCTATACCGGTTTTCATTGGCTTATCATAAAGAAACATGGCGTCGTGCGGGGCTTTATAAACGGTCAAAACA
Unaligned ( gi|18 ): TTGATACTGACTGTTTAAGAAACATCACCAACAGTTAAAACTCTAACT
Unaligned ( gi|19 ): TTTTAAATAGTGTCTCCTTTATGTTTGTATA
Alignments
lowQualScore : 22222 4444444444 3333333 22222 1 1 1 222 11 1 222 1 22222 11 11 1 33333333 333333333 1 11 1 222222222 55555555555555555 33333333 66666666666666666666666 222 999999999999999999999 55555555 2222 2222 4444444444444444 222 1 1 1 888888888888888888888888 2222 33333333 1
lowQualScore : 66666 1 1 2222222222 2222222 1 77777 5 5 1 1 1 1 1 5 1 111 88 5 000 1 1 5 77777 88 22 1 22 66 1 1 5 55555555 999999999 5 1 88 1 1 1 1 5 1 1 777777777 1 00000000000000000 44444444 1 22222222222222222222222 1 444 111111111111111111111 11111111 2222 1111 5555555555555555 333 1 6 7 1 5 5 5 1 555555555555555555555555 4444 55555555 1 5
lowQualScore : ..... . . .......... ....... . ..... . . . . . . . . . ... .. . ... . . . ..... .. .. . .. .. . . . ........ ......... . . .. . . . . . . . ......... . ................. ........ . ....................... . ... ..................... ........ .... .... ................ ... . . . . . . . . ........................ .... ........ . .
lowQualScore : 55555 0 0 5555555555 5555555 0 00000 5 5 0 0 0 0 0 5 0 555 00 0 555 0 0 5 00000 00 00 0 00 55 0 0 0 00000000 000000000 5 0 33 0 0 0 0 5 0 0 555555555 0 00000000000000000 55555555 0 55555555555555555555555 0 333 333333333333333333333 33333333 0000 2222 0000000000000000 333 0 7 3 0 0 5 0 0 555555555555555555555555 0000 00000000 0 5
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCATGTATACGTATAATTCTTATAATATTTTTATGAATANTATTTGATATTGTACCATATNGCTATAATAAAAAAATTTAGAAGTTTCTGTCAAAAGTAATTAATACAGNTATTATGATTAGATAAATAATCACTTGTATATAGACNGNCCTTNGTTTTATCAAANCGTNCAGGTAGATAAGCCTACAGTNATGGGGTGTCACATATTATGTTGTACATCCTGGACTGGAAGGTAATATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAATGAAGGTTAAGAGCAGTTAGGACATNAGNAGATAAGAAAGTTAAATAGGNNACATAAATTCTNTAAATCAAAACAGATAATGCTGCATAGTCTTTCNNTGAGATAANAATATANTATACGAGTATGTAACATACAACATNTATGTCTATGATGGTTATGATGAATACTTCTATGAAGTTATCCCATTTAGTTTNT--AACGCACTGAGNGCGGGTTTTTGTTTCACCAACACCTTCNTTGGNTTACTGTCTTAACTGATTTTAGAATGNTGGTTCGCCTATTCTGTAACNAGTNGGACTTAAATGTACTGCAATTCTACAGAATCAAGTGCAAAAACACNGTTACCTAGAATATATTTCTGTAAACTTATGTTTCCTTGAGGTACTAGTGCGAATGACCGAGTTTGTGTTGGTGAGGCGTTAGCCCGCTCTCCGCTCATATGGTTTTTGNCTGTGAAGATATTTTTCACATACAGATTAAAGAGNAAACTTTCCTTGCTAGTAAA-GTTTT---------TTTT--C-TAATTGTTAGAACAAACTGAAACACATTGGTTTGTACAGTTATTGTATAACTTACCGGTATTTGATACGA-----AAAATATATTTGAAAA----AAAATGTTATATCAGAA-TGTT-GTACA-A-CTACATCATAATTTGTA---TTTTTTACATNTGATTTTGTTAAACTGTTACAATGAAATAAAAAAAATACNAAACAATATTAGCTTTATATTGTGAAATTGAAAAAAAATNCAATGGTTATTATAAGCCAGTACAGCATTGTTAAACTATAGATCTACTATACTTTGTATAACAACTTAGTGAATATNCATATTCATTTAGGTCAAAACAATGCCGTCATCACAATGAAATGGTATATGGCGCACTTTATGATCTTGGTCAT
Reference ( family-2402 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCATGTATACGTATAATTCTTATAATATTTTTATGAATANTATTTGATATTGTACCATATNGCTATAATAAAAAAATTTAGAAGTTTCTGTCAAAAGTAATTAATACAGNTATTATGATTAGATAAATAATCACTTGTATATAGACNGNCCTTNGTTTTATCAAANCGTNCAGGTAGATAAGCCTACAGTNATGGGGTGTCACATATTATGTTGTACATCCTGGACTGGAAGGTAATATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAATGAAGGTTAAGAGCAGTTAGGACATNAGNAGATAAGAAAGTTAAATAGGNNACATAAATTCTNTAAATCAAAACAGATAATGCTGCATAGTCTTTCNNTGAGATAANAATATANTATACGAGTATGTAACATACAACATNTATGTCTATGATGGTTATGATGAATACTTCTATGAAGTTATCCCATTTAGTTTNT--AACGCACTGAGNGCGGGTTTTTGTTTCACCAACACCTTCNTTGGNTTACTGTCTTAACTGATTTTAGAATGNTGGTTCGCCTATTCTGTAACNAGTNGGACTTAAATGTACTGCAATTCTACAGAATCAAGTGCAAAAACACNGTTACCTAGAATATATTTCTGTAAACTTATGTTTCCTTGAGGTACTAGTGCGAATGACCGAGTTTGTGTTGGTGAGGCGTTAGCCCGCTCTCCGCTCATATGGTTTTTGNCTGTGAAGATATTTTTCACATACAGATTAAAGAGNAAACTTTCCTTGCTAGTAAA-GTTTT---------TTTTC---TAATTGTTAGAACAAACTGAAACACATTGGTTTGTACAGTTATTGTATAACTTACCGGTATTTGATACAA-----AAAATATATTTGAAAA----AAAATGTTATATCAGAA-TGTT-GTACA-A-CTACATCATAATTTGTA---TTTTTTACATNTGATTTTGTTAAACTGTTACAATGAAATAAAAAAAATACNAAACAATATTAGCTTTATATTGTGAAATTGAAAAAAAATNCAATNGTTATTATAAGCCAGTACAGCATTGTTAAACTATAGATCTACTATACTTTGTATAACAACTTAGTGAATATNCATATTCATTTAGGTCAAAACAATGCCGTCATCACAATGAAATGGTATATGGCGCACTTTATGATCTTGGTCAT
gi|1 : ACCATGTA-----ATAATTCTTATAATATTTTTATGAATAATATTTAATATTGTACCATATTGCTATA----------TTAGAAATTTCTGT-------AATTAATACAGTTATTATGATTAGATAAATAATCACTTGTATATAAACAATCCTTAGTTTTATCAAAACGTACAAGTAAATAAGCCTATAGTCATGAGGTGTCACA---TATGTTGTACATCTTGGACTGGAAGGTAATATTA
gi|1 : ctgcacttaaaaacttgaataatacagagacggttttttccccaaatttacttgcattaattttattcatcctatgtcgcactataatgagtaaggccttaggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgtcGAAATGAAGGTTAAGA-TAGTTAGGACATAAGGAGA-AAGAAAGTTAAATAGGGAACATAAATTCTTTAAATCAAAACAGATAATACTGCATAGTCTTTCTTTGAGATAAAAATATAGTATACAAGTATGTAACATACAACATCTATGTTTATGATGGTTATGATGAATACTTCTATGAAGTTATCTTATTTAGTTTTTTCAACGCACTGAGTGTGGGTTTTTGTTTCACCAACACCTTCATTGAATTACTGTCTTAACTGATTTTAGAATGTTGGTTTGCCTATTCTGTAACCAGTTGGAC----AT---TTGCAATTCTACAGAATCAAGTGCAAAAACACTGTTACCTAGAATATATTTCTGTAAACTTATGTTTCCTTGAGGTACTAGTGCGAATGACCGAGTTTGTGTTGGTGAGGCGTTAGCCTGCTCTCTGCTCATATGGTTTTTGACTG----AAT----------------TTAAAGAGAAAACTTTCCTTGCTAGTAAATGTTTT---------TTTTCTCTTAA-TGTTAGAACAAACTGAAACACATTGGTTTGTACAGTTATTGTATAACTTACCGGTATTTGATAC-------AAAATACAT---AAAA----AAAATGTTATATCAG--------------A-CTACATCATAATTTGTA---TTTTCTACATTTGATTTTGTTTAA-TGTTACAATGAAATAAAAAAAATACCAAA-AA-ATTAGCTTTATATTGTGAAATTGAAAAAAAATCCAATGGTTATTATAAGCCAGTACAGCATTGTTAAACTATAGATCTACTATACTTTGTATAACAACTTAGTGAATATTCATATTCATTTAGATCAAAACAATGCCGTCATCACAATGAAATGGTATATGGCGCACTTTATGATCTTGGTCATgtgccagaatgtttgcacagtagttgtcacaaattgggtacatcctgtatagtgtaaatgctaagttgtttgagtgatgggtataagtagttaatgaatggaactgaccaatgaaagaaaggattcattaggttgttagggagtttaaagactatgagagagatgactgagtgatactaaatatgggaagagtctgagaagaaagagtgtgaaatatgaaagtatgtaggtagtaagaaaagggagattgaaaggttaagtaaggaaaaagagattgagggattaaaaggagatagtaggttgagaaatgaaggttaagatagttaggacataaggagaaagaaagttaaatagggaacataaattctttaaatcaaaacagataatactgcatagtctttctttgagataaaaatatagtatacaagtatgtaacatacaacatctatgtttatgatggttatgatgaatacttctatgaagttatcttatttagttttttcaacgcactgagtgtgggtttttgtttcaccaacaccttcattgaattactgtcttaactgattttagaatgttggtttgcctattctgtaaccagttggacatttgcaattctacagaatcaagtgcaaaaacactgttacctagaatatatttctgtaaacttatgtttccttgaggtactagtgcgaatgaccgagtttgtgttggtgaggcgttagcctgctctctgctcatatggtttttgactgaatttaaagagaaaactttccttgctagtaaatgttttttttctcttaatgttagaacaaactgaaacacattggtttgtacagttattgtataacttaccggtatttgatacaaaatacataaaaaaaatgttatatcagactacatcataatttgtattttctacatttgattttgtttaatgttacaatgaaataaaaaaaataccaaaaaattagctttatattgtgaaattgaaaaaaaatccaatggttattataagccagtacagcattgttaaactatagatctactatactttgtataacaacttagtgaatattcatattcatttagatcaaaacaatgccgtcatcacaatgaaatggtatatggcgcactttatgatcttggtcat
gi|10 : ctgcacttaaaaacttgaataatacagagacggttttttccccaaatttacttgcattaattttattcatcctatgtcgcactataatgagtaaggccttaggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgtcaccatgtaataattcttataatatttttatgaataatatttaatattgtaccatattgctatattagaaatttctgtaattaatacagttattatgattagataaataatcacttgtatataaacaatccttagttttatcaaaacgtacaagtaaataagcctatagtcatgaggtgtcacatatgttgtacatcttggactggaaggtaatattagtgccagaatgtttgcacagtagttgtcacaaattgggtacatcctgtatagtgtaaatgctaagttgtttgagtgatgggtataagtagttaatgaatggaactgaccaatgaaagaaaggattcattaggttgttagggagtttaaagactatgagagagatgactgagtgatactaaatatgggaagagtctgagaagaaagagtgtgaaatatgaaagtatgtaggtagtaagaaaagggagattgaaaggttaagtaaggaaaaagagattgagggattaaaaggagatagtaggttgaTTATAT-TAGACTGGCCTTTGTTTTATCAAACTGTTC-GGTAGATAAGTTTACAATAATGGAGTGTCACATATTATGTTGTACATCCTGGACTGGAAAGTAATATTA
gi|2 : CTTTCCTTGCTAGTAA---TTTT---------TTTTAATGTAATTATTAGAACAAACTGAAATACATTGGTTTGTACAGTTATTGTATAACTTACCGGTATTCAACA-AA-----AAAATATA----AAAA----AAtaagaattattacatggttg
gi|2 : ATTTACAAATATGAAAATATTATATCAGAA-TGTTTGTATA-AACTGCATCATAATTTGCAATTTTTTTTACTTCTGATTTTGTGAAACTGTTACAATGAAATAAAAAAA-TACAAAACAATATTAGCTTTATATTGTGAAATT-AAAAAAAATGCA------------------------ATTGTTAAACT----ATCTACTATACTTTGTATAACA--------AATATACATATTCATTTAGGTCAAAACAATGCCGTCATCACAATGAAATGGTATATGGCGC-CTTTATGATCTTGGTCATcaaaagaactcagagttaataaatttactaaagaacctgaaaagtttgcctcttattaatttacaaatatgaaaatattatatcagaatgtttgtataaactgcatcataatttgcaattttttttacttctgattttgtgaaactgttacaatgaaataaaaaaatacaaaacaatattagctttatattgtgaaattaaaaaaaatgcaattgttaaactatctactatactttgtataacaaatatacatattcatttaggtcaaaacaatgccgtcatcacaatgaaatggtatatggcgcctttatgatcttggtcattgaaaatgattcaattagagctgtatgttttgactgatagaccggttaccattgtctaattattaacaactatggcagggagacagtgtgacctttctaagataaagggtcagaacagtgcaaaaagaatagcgttttctttgatatagactgtttaagtaacccaacgaaaattcatata
gi|3 : ctttccttgctagtaattttttttaatgtaattattagaacaaactgaaatacattggtttgtacagttattgtataacttaccggtattcaacaaaaaaatataaaaaaacaaaagaactcagagttaataaatttactaaagaacctgaaaagtttgcctcttatta--AACACACTGAGGGCGGGTTTTTGTTTCACCAACACTTTCTTTGGTTTACTGTCTTAACTGATTTTAGAATGATGGTTCGTCTAT-CTGTAACAAGTGGGACTTAAATGTACTGCAATTCTACAGAATCAAGTGCAAAAACACGGTTACCTAGAATATAT------------AT---TCCTTGAGGTATTAGTGTGA--------GTTTGTATTGGTGAGGTGTTAGCCCGCTCTCCGTTTATATGGTTTTTGTTTGTGAAGATATTTTTCACATACAGATTAAAAAGCAAACTTACCTTGCTAGTAAA-AATTTAAAAAAGAATTT--------TTGTTAGTACAAACTGAAACACATTGGTTTGTACATTTATTGTATTACTTACCGGTATTTGAtgaaaatgattcaattagagctgtatgttttgactgatagaccggttaccattgtctaattattaacaactatggcagggagacagtgtgacctttctaagataaagggtcagaacagtgcaaaaagaatagcgttttctttgatatagactgtttaagtaacccaacgaaaattcatata
gi|4 : ATCGGTTTGTACAGTTATTGTACAACTTACCGGTATTTAATACGAATAACAAAATATATTTGAAAA----CAAA
gi|4 : AAATGTTATATCAGAAATGTT-GTACATA-CTACATCATAATTTGTA---TTTTTTACATATGATTTTGATAAACTGTTACAATGAAATAAAAAAAAacaaaaacaacaacaacaaaactcagagttaataaatttactaaaaaatctggaaaatttatctcttaatttacaaatatgcaaatgttatatcagaaatgttgtacatactacatcataatttgtattttttacatatgattttgataaactgttacaatgaaataaaaaaaact
gi|6 : atcggtttgtacagttattgtacaacttaccggtatttaatacgaataacaaaatatatttgaaaacaaaacaaaaacaacaacaacaaaactcagagttaataaatttactaaaaaatctggaaaatttatctcttaatttacaaatatgcGAAATGA--GTTAAAAGCAGTTA---TATCAGTAAATAAG-----TAAAT--GTTACATAAATTCTATAAATCAAAATAGATAATGTTGCATAGTCTTTCAGTGAGATAAT-ATATATTATACGAGTATGTAACATACAACATATATGTCTAT-AT--------TGAATACTTC-A-------ATCCCA-TTAGTTTAT--AACGCct
gi|8 : ATGTATACGTATAATTCTTATAATATTTTTATGAATACTATTTGATATTGTACCATATGGCTATAATAAAAAAATTTAGAAGTTTTTGTCAAAAGTAATTAATACAGATAT-----TTAGA-AAATAATCATTTGTg
12 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): CACGACTGATAGGCCAGTTTCTATTGGCTATTCATTAAAAGTCAGGACATCAGATAGGGTCTTGTGTCAAATGAACATTCAAAACAAAAGTGTCAGAACAGTGCAAAAAAGATGTTTGTCTTTGATATCAACTGTTTAAGAAATCCAATGAACATTCAAACTCAAAACGTGAAGATGCAAGATGTAACAT
Unaligned ( gi|7 ): ACCTTAATCATTGGAAAATGCTTCAAATGACTTTTTATGTTTTTGCTGATAGCCTGACAGTGAAAATATATGTACCACTGACAAATAATTAATGAACATGACATCAGACAGGGCTTTGTGGTATGTGAGCATTCAAAATAAAAGGGTCAGAACAC
Unaligned ( gi|9 ): AATGTTTTGATTGATATTCCAGTTTCCATTGGCCTATCATTAGAAAACATGACGTAAGCGAGGTTTTGTGGTTCCTGAACTATCAGAACAAGTGGATCAGACAAACACAAAGTTTTCTAGATATCCA
Unaligned ( gi|11 ): AAGACTGGGTTTGTGACATGTTAACTACCAACACAATAGTGTCAGAGCTGAGTGCAAACAAGCAAATGTGTTTCTTTGATACAAACTTTTTAAGAAACATCACAAACATTTTAACCTCTAA
Unaligned ( gi|12 ): AGACTGGGTTTGGGACATGTTAACTATCAACACAATAGTGTCAGAGCTGAGTGCAAACAAGCAAATGTGTTTCTTTGATACAAACTTTTTAAGAAACATCACAAACATTTTAACCTCTAA
Unaligned ( gi|13 ): CATAAACATGATGTCAGGCAAGGTTTGTTAAACATGAATATTCAAATCAAACGCTTCAGAACAGTGCAAAATGAATTCTGTTTTTTTTTAATGATACAAATTGT
Unaligned ( gi|14 ): TAATTAAAAGTCAGGGTGTGATTCTTGCTTTTGTGGCATGTCAACTATCAAAATAAAGGGATCAGAGCAGTGTAAAAAGATGTTTTTTTCTTTGA
Unaligned ( gi|15 ): TTTTCACTGACTAATCATTGATAATCATGACACAAAGCAAAGCTTTGTGAACTACCAAAACAAAAGGGTCAGAACAGA
Unaligned ( gi|16 ): CAGAACAGTGAAAAAGGACACTTTGTTTTTCTTTGATATGGACTGTTTAAAAAGTGACATGAACAGTTGACACT
Unaligned ( gi|17 ): TGCTATACCGGTTTTCATTGGCTTATCATAAAGAAACATGGCGTCGTGCGGGGCTTTATAAACGGTCAAAACA
Unaligned ( gi|18 ): TTGATACTGACTGTTTAAGAAACATCACCAACAGTTAAAACTCTAACT
Unaligned ( gi|19 ): TTTTAAATAGTGTCTCCTTTATGTTTGTATA
Alignments
lowQualScore : 22222 4444444444 3333333 22222 1 1 1 222 11 1 222 1 22222 11 11 1 33333333 333333333 1 11 1 222222222 55555555555555555 33333333 66666666666666666666666 222 999999999999999999999 55555555 2222 2222 4444444444444444 222 1 1 1 888888888888888888888888 2222 33333333 1
lowQualScore : 66666 1 1 2222222222 2222222 1 77777 5 5 1 1 1 1 1 5 1 111 88 5 000 1 1 5 77777 88 22 1 22 66 1 1 5 55555555 999999999 5 1 88 1 1 1 1 5 1 1 777777777 1 00000000000000000 44444444 1 22222222222222222222222 1 444 111111111111111111111 11111111 2222 1111 5555555555555555 333 1 6 7 1 5 5 5 1 000000000000000000000000 4444 55555555 1 5
lowQualScore : ..... . . .......... ....... . ..... . . . . . . . . . ... .. . ... . . . ..... .. .. . .. .. . . . ........ ......... . . .. . . . . . . . ......... . ................. ........ . ....................... . ... ..................... ........ .... .... ................ ... . . . . . . . . ........................ .... ........ . .
lowQualScore : 55555 0 0 5555555555 5555555 0 00000 5 5 0 0 0 0 0 5 0 555 00 0 555 0 0 5 00000 00 00 0 00 55 0 0 0 00000000 000000000 5 0 33 0 0 0 0 5 0 0 555555555 0 00000000000000000 55555555 0 55555555555555555555555 0 333 333333333333333333333 00000000 0000 2222 0000000000000000 333 0 7 3 0 0 5 0 0 000000000000000000000000 0000 00000000 0 5
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCATGTATACGTATAATTCTTATAATATTTTTATGAATANTATTTGATATTGTACCATATNGCTATAATAAAAAAATTTAGAAGTTTCTGTCAAAAGTAATTAATACAGNTATTATGATTAGATAAATAATCACTTGTATATAGACNGNCCTTNGTTTTATCAAANCGTNCAGGTAGATAAGCCTACAGTNATGGGGTGTCACATATTATGTTGTACATCCTGGACTGGAAGGTAATATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAATGAAGGTTAAGAGCAGTTAGGACATNAGNAGATAAGAAAGTTAAATAGGNNACATAAATTCTNTAAATCAAAACAGATAATGCTGCATAGTCTTTCNNTGAGATAANAATATANTATACGAGTATGTAACATACAACATNTATGTCTATGATGGTTATGATGAATACTTCTATGAAGTTATCCCATTTAGTTTNT--AACGCACTGAGNGCGGGTTTTTGTTTCACCAACACCTTCNTTGGNTTACTGTCTTAACTGATTTTAGAATGNTGGTTCGCCTATTCTGTAACNAGTNGGACTTAAATGTACTGCAATTCTACAGAATCAAGTGCAAAAACACNGTTACCTAGAATATATTTCTGTAAACTTATGTTTCCTTGAGGTACTAGTGCGAATGACCGAGTTTGTGTTGGTGAGGCGTTAGCCCGCTCTCCGCTCATATGGTTTTTGNCTGTGAAGATATTTTTCACATACAGATTAAAGAGNAAACTTTCCTTGCTAGTAAA-GTTTT---------TTTT--C-TAATTGTTAGAACAAACTGAAACACATTGGTTTGTACAGTTATTGTATAACTTACCGGTATTTGATACGA-----AAAATATATTTGAAAA----AAAATGTTATATCAGAA-TGTT-GTACA-A-CTACATCATAATTTGTA---TTTTTTACATNTGATTTTGTTAAACTGTTACAATGAAATAAAAAAAATACNAAACAATATTAGCTTTATATTGTGAAATTGAAAAAAAATNCAATGGTTATTATAAGCCAGTACAGCATTGTTAAACTATAGATCTACTATACTTTGTATAACAACTTAGTGAATATNCATATTCATTTAGGTCAAAACAATGCCGTCATCACAATGAAATGGTATATGGCGCACTTTATGATCTTGGTCAT
Reference ( family-2402 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCATGTATACGTATAATTCTTATAATATTTTTATGAATANTATTTGATATTGTACCATATNGCTATAATAAAAAAATTTAGAAGTTTCTGTCAAAAGTAATTAATACAGNTATTATGATTAGATAAATAATCACTTGTATATAGACNGNCCTTNGTTTTATCAAANCGTNCAGGTAGATAAGCCTACAGTNATGGGGTGTCACATATTATGTTGTACATCCTGGACTGGAAGGTAATATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAATGAAGGTTAAGAGCAGTTAGGACATNAGNAGATAAGAAAGTTAAATAGGNNACATAAATTCTNTAAATCAAAACAGATAATGCTGCATAGTCTTTCNNTGAGATAANAATATANTATACGAGTATGTAACATACAACATNTATGTCTATGATGGTTATGATGAATACTTCTATGAAGTTATCCCATTTAGTTTNT--AACGCACTGAGNGCGGGTTTTTGTTTCACCAACACCTTCNTTGGNTTACTGTCTTAACTGATTTTAGAATGNTGGTTCGCCTATTCTGTAACNAGTNGGACTTAAATGTACTGCAATTCTACAGAATCAAGTGCAAAAACACNGTTACCTAGAATATATTTCTGTAAACTTATGTTTCCTTGAGGTACTAGTGCGAATGACCGAGTTTGTGTTGGTGAGGCGTTAGCCCGCTCTCCGCTCATATGGTTTTTGNCTGTGAAGATATTTTTCACATACAGATTAAAGAGNAAACTTTCCTTGCTAGTAAA-GTTTT---------TTTTC---TAATTGTTAGAACAAACTGAAACACATTGGTTTGTACAGTTATTGTATAACTTACCGGTATTTGATACGA-----AAAATATATTTGAAAA----AAAATGTTATATCAGAA-TGTT-GTACA-A-CTACATCATAATTTGTA---TTTTTTACATNTGATTTTGTTAAACTGTTACAATGAAATAAAAAAAATACNAAACAATATTAGCTTTATATTGTGAAATTGAAAAAAAATNCAATGGTTATTATAAGCCAGTACAGCATTGTTAAACTATAGATCTACTATACTTTGTATAACAACTTAGTGAATATNCATATTCATTTAGGTCAAAACAATGCCGTCATCACAATGAAATGGTATATGGCGCACTTTATGATCTTGGTCAT
gi|1 : ACCATGTA-----ATAATTCTTATAATATTTTTATGAATAATATTTAATATTGTACCATATTGCTATA----------TTAGAAATTTCTGT-------AATTAATACAGTTATTATGATTAGATAAATAATCACTTGTATATAAACAATCCTTAGTTTTATCAAAACGTACAAGTAAATAAGCCTATAGTCATGAGGTGTCACA---TATGTTGTACATCTTGGACTGGAAGGTAATATTA
gi|1 : ctgcacttaaaaacttgaataatacagagacggttttttccccaaatttacttgcattaattttattcatcctatgtcgcactataatgagtaaggccttaggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgtcGAAATGAAGGTTAAGA-TAGTTAGGACATAAGGAGA-AAGAAAGTTAAATAGGGAACATAAATTCTTTAAATCAAAACAGATAATACTGCATAGTCTTTCTTTGAGATAAAAATATAGTATACAAGTATGTAACATACAACATCTATGTTTATGATGGTTATGATGAATACTTCTATGAAGTTATCTTATTTAGTTTTTTCAACGCACTGAGTGTGGGTTTTTGTTTCACCAACACCTTCATTGAATTACTGTCTTAACTGATTTTAGAATGTTGGTTTGCCTATTCTGTAACCAGTTGGAC----AT---TTGCAATTCTACAGAATCAAGTGCAAAAACACTGTTACCTAGAATATATTTCTGTAAACTTATGTTTCCTTGAGGTACTAGTGCGAATGACCGAGTTTGTGTTGGTGAGGCGTTAGCCTGCTCTCTGCTCATATGGTTTTTGACTG----AAT----------------TTAAAGAGAAAACTTTCCTTGCTAGTAAATGTTTT---------TTTTCTCTTAA-TGTTAGAACAAACTGAAACACATTGGTTTGTACAGTTATTGTATAACTTACCGGTATTTGATAC-------AAAATACAT---AAAA----AAAATGTTATATCAG--------------A-CTACATCATAATTTGTA---TTTTCTACATTTGATTTTGTTTAA-TGTTACAATGAAATAAAAAAAATACCAAA-AA-ATTAGCTTTATATTGTGAAATTGAAAAAAAATCCAATGGTTATTATAAGCCAGTACAGCATTGTTAAACTATAGATCTACTATACTTTGTATAACAACTTAGTGAATATTCATATTCATTTAGATCAAAACAATGCCGTCATCACAATGAAATGGTATATGGCGCACTTTATGATCTTGGTCATgtgccagaatgtttgcacagtagttgtcacaaattgggtacatcctgtatagtgtaaatgctaagttgtttgagtgatgggtataagtagttaatgaatggaactgaccaatgaaagaaaggattcattaggttgttagggagtttaaagactatgagagagatgactgagtgatactaaatatgggaagagtctgagaagaaagagtgtgaaatatgaaagtatgtaggtagtaagaaaagggagattgaaaggttaagtaaggaaaaagagattgagggattaaaaggagatagtaggttgagaaatgaaggttaagatagttaggacataaggagaaagaaagttaaatagggaacataaattctttaaatcaaaacagataatactgcatagtctttctttgagataaaaatatagtatacaagtatgtaacatacaacatctatgtttatgatggttatgatgaatacttctatgaagttatcttatttagttttttcaacgcactgagtgtgggtttttgtttcaccaacaccttcattgaattactgtcttaactgattttagaatgttggtttgcctattctgtaaccagttggacatttgcaattctacagaatcaagtgcaaaaacactgttacctagaatatatttctgtaaacttatgtttccttgaggtactagtgcgaatgaccgagtttgtgttggtgaggcgttagcctgctctctgctcatatggtttttgactgaatttaaagagaaaactttccttgctagtaaatgttttttttctcttaatgttagaacaaactgaaacacattggtttgtacagttattgtataacttaccggtatttgatacaaaatacataaaaaaaatgttatatcagactacatcataatttgtattttctacatttgattttgtttaatgttacaatgaaataaaaaaaataccaaaaaattagctttatattgtgaaattgaaaaaaaatccaatggttattataagccagtacagcattgttaaactatagatctactatactttgtataacaacttagtgaatattcatattcatttagatcaaaacaatgccgtcatcacaatgaaatggtatatggcgcactttatgatcttggtcat
gi|10 : ctgcacttaaaaacttgaataatacagagacggttttttccccaaatttacttgcattaattttattcatcctatgtcgcactataatgagtaaggccttaggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgtcaccatgtaataattcttataatatttttatgaataatatttaatattgtaccatattgctatattagaaatttctgtaattaatacagttattatgattagataaataatcacttgtatataaacaatccttagttttatcaaaacgtacaagtaaataagcctatagtcatgaggtgtcacatatgttgtacatcttggactggaaggtaatattagtgccagaatgtttgcacagtagttgtcacaaattgggtacatcctgtatagtgtaaatgctaagttgtttgagtgatgggtataagtagttaatgaatggaactgaccaatgaaagaaaggattcattaggttgttagggagtttaaagactatgagagagatgactgagtgatactaaatatgggaagagtctgagaagaaagagtgtgaaatatgaaagtatgtaggtagtaagaaaagggagattgaaaggttaagtaaggaaaaagagattgagggattaaaaggagatagtaggttgaTTATAT-TAGACTGGCCTTTGTTTTATCAAACTGTTC-GGTAGATAAGTTTACAATAATGGAGTGTCACATATTATGTTGTACATCCTGGACTGGAAAGTAATATTA
gi|2 : CTTTCCTTGCTAGTAA---TTTT---------TTTTAATGTAATTATTAGAACAAACTGAAATACATTGGTTTGTACAGTTATTGTATAACTTACCGGTATTCAACA-AA-----AAAATATA----AAAA----AAtaagaattattacatggttg
gi|2 : ATTTACAAATATGAAAATATTATATCAGAA-TGTTTGTATA-AACTGCATCATAATTTGCAATTTTTTTTACTTCTGATTTTGTGAAACTGTTACAATGAAATAAAAAAA-TACAAAACAATATTAGCTTTATATTGTGAAATT-AAAAAAAATGCA------------------------ATTGTTAAACT----ATCTACTATACTTTGTATAACA--------AATATACATATTCATTTAGGTCAAAACAATGCCGTCATCACAATGAAATGGTATATGGCGC-CTTTATGATCTTGGTCATcaaaagaactcagagttaataaatttactaaagaacctgaaaagtttgcctcttattaatttacaaatatgaaaatattatatcagaatgtttgtataaactgcatcataatttgcaattttttttacttctgattttgtgaaactgttacaatgaaataaaaaaatacaaaacaatattagctttatattgtgaaattaaaaaaaatgcaattgttaaactatctactatactttgtataacaaatatacatattcatttaggtcaaaacaatgccgtcatcacaatgaaatggtatatggcgcctttatgatcttggtcattgaaaatgattcaattagagctgtatgttttgactgatagaccggttaccattgtctaattattaacaactatggcagggagacagtgtgacctttctaagataaagggtcagaacagtgcaaaaagaatagcgttttctttgatatagactgtttaagtaacccaacgaaaattcatata
gi|3 : ctttccttgctagtaattttttttaatgtaattattagaacaaactgaaatacattggtttgtacagttattgtataacttaccggtattcaacaaaaaaatataaaaaaacaaaagaactcagagttaataaatttactaaagaacctgaaaagtttgcctcttatta--AACACACTGAGGGCGGGTTTTTGTTTCACCAACACTTTCTTTGGTTTACTGTCTTAACTGATTTTAGAATGATGGTTCGTCTAT-CTGTAACAAGTGGGACTTAAATGTACTGCAATTCTACAGAATCAAGTGCAAAAACACGGTTACCTAGAATATAT------------AT---TCCTTGAGGTATTAGTGTGA--------GTTTGTATTGGTGAGGTGTTAGCCCGCTCTCCGTTTATATGGTTTTTGTTTGTGAAGATATTTTTCACATACAGATTAAAAAGCAAACTTACCTTGCTAGTAAA-AATTTAAAAAAGAATTT--------TTGTTAGTACAAACTGAAACACATTGGTTTGTACATTTATTGTATTACTTACCGGTATTTGAtgaaaatgattcaattagagctgtatgttttgactgatagaccggttaccattgtctaattattaacaactatggcagggagacagtgtgacctttctaagataaagggtcagaacagtgcaaaaagaatagcgttttctttgatatagactgtttaagtaacccaacgaaaattcatata
gi|4 : ATCGGTTTGTACAGTTATTGTACAACTTACCGGTATTTAATACGAATAACAAAATATATTTGAAAA----CAAA
gi|4 : AAATGTTATATCAGAAATGTT-GTACATA-CTACATCATAATTTGTA---TTTTTTACATATGATTTTGATAAACTGTTACAATGAAATAAAAAAAAacaaaaacaacaacaacaaaactcagagttaataaatttactaaaaaatctggaaaatttatctcttaatttacaaatatgcaaatgttatatcagaaatgttgtacatactacatcataatttgtattttttacatatgattttgataaactgttacaatgaaataaaaaaaact
gi|6 : atcggtttgtacagttattgtacaacttaccggtatttaatacgaataacaaaatatatttgaaaacaaaacaaaaacaacaacaacaaaactcagagttaataaatttactaaaaaatctggaaaatttatctcttaatttacaaatatgcGAAATGA--GTTAAAAGCAGTTA---TATCAGTAAATAAG-----TAAAT--GTTACATAAATTCTATAAATCAAAATAGATAATGTTGCATAGTCTTTCAGTGAGATAAT-ATATATTATACGAGTATGTAACATACAACATATATGTCTAT-AT--------TGAATACTTC-A-------ATCCCA-TTAGTTTAT--AACGCct
gi|8 : ATGTATACGTATAATTCTTATAATATTTTTATGAATACTATTTGATATTGTACCATATGGCTATAATAAAAAAATTTAGAAGTTTTTGTCAAAAGTAATTAATACAGATAT-----TTAGA-AAATAATCATTTGTg
blockSeqs : TACGT C G ATAAAAAAAT CAAAAGT A . . . T G T C T . A TAT . G . C T T . . TT A AG T T A . . A . A . G T T A . A G TTAAATGTA G AT . T TGAAGATATTTTTCACATACAGA C AA AAAAAAGAATTTT CGAATAAC TTTA TATG AATGTTTGTATAAA ATT C C A A C T . G . . . A .
blockSeqs : . . TTTTAATGTAAT AA TTTG . AAATGTTGTACATA . A C .
blockSeqs : . .
blockSeqCons :
originalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCATGTATACGTATAATTCTTATAATATTTTTATGAATANTATTTGATATTGTACCATATNGCTATAATAAAAAAATTTAGAAGTTTCTGTCAAAAGTAATTAATACAGNTATTATGATTAGATAAATAATCACTTGTATATAGACNGNCCTTNGTTTTATCAAANCGTNCAGGTAGATAAGCCTACAGTNATGGGGTGTCACATATTATGTTGTACATCCTGGACTGGAAGGTAATATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAATGAAGGTTAAGAGCAGTTAGGACATNAGNAGATAAGAAAGTTAAATAGGNNACATAAATTCTNTAAATCAAAACAGATAATGCTGCATAGTCTTTCNNTGAGATAANAATATANTATACGAGTATGTAACATACAACATNTATGTCTATGATGGTTATGATGAATACTTCTATGAAGTTATCCCATTTAGTTTNT--AACGCACTGAGNGCGGGTTTTTGTTTCACCAACACCTTCNTTGGNTTACTGTCTTAACTGATTTTAGAATGNTGGTTCGCCTATTCTGTAACNAGTNGGACTTAAATGTACTGCAATTCTACAGAATCAAGTGCAAAAACACNGTTACCTAGAATATATTTCTGTAAACTTATGTTTCCTTGAGGTACTAGTGCGAATGACCGAGTTTGTGTTGGTGAGGCGTTAGCCCGCTCTCCGCTCATATGGTTTTTGNCTGTGAAGATATTTTTCACATACAGATTAAAGAGNAAACTTTCCTTGCTAGTAAA-GTTTT---------TTTT--C-TAATTGTTAGAACAAACTGAAACACATTGGTTTGTACAGTTATTGTATAACTTACCGGTATTTGATACGA-----AAAATATATTTGAAAA----AAAATGTTATATCAGAA-TGTT-GTACA-A-CTACATCATAATTTGTA---TTTTTTACATNTGATTTTGTTAAACTGTTACAATGAAATAAAAAAAATACNAAACAATATTAGCTTTATATTGTGAAATTGAAAAAAAATNCAATGGTTATTATAAGCCAGTACAGCATTGTTAAACTATAGATCTACTATACTTTGTATAACAACTTAGTGAATATNCATATTCATTTAGGTCAAAACAATGCCGTCATCACAATGAAATGGTATATGGCGCACTTTATGATCTTGGTCAT
finalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCATGTATACGTATAATTCTTATAATATTTTTATGAATANTATTTGATATTGTACCATATNGCTATAATAAAAAAATTTAGAAGTTTCTGTCAAAAGTAATTAATACAGNTATTATGATTAGATAAATAATCACTTGTATATAGACNGNCCTTNGTTTTATCAAANCGTNCAGGTAGATAAGCCTACAGTNATGGGGTGTCACATATTATGTTGTACATCCTGGACTGGAAGGTAATATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAATGAAGGTTAAGAGCAGTTAGGACATNAGNAGATAAGAAAGTTAAATAGGNNACATAAATTCTNTAAATCAAAACAGATAATGCTGCATAGTCTTTCNNTGAGATAANAATATANTATACGAGTATGTAACATACAACATNTATGTCTATGATGGTTATGATGAATACTTCTATGAAGTTATCCCATTTAGTTTNT--AACGCACTGAGNGCGGGTTTTTGTTTCACCAACACCTTCNTTGGNTTACTGTCTTAACTGATTTTAGAATGNTGGTTCGCCTATTCTGTAACNAGTNGGACTTAAATGTACTGCAATTCTACAGAATCAAGTGCAAAAACACNGTTACCTAGAATATATTTCTGTAAACTTATGTTTCCTTGAGGTACTAGTGCGAATGACCGAGTTTGTGTTGGTGAGGCGTTAGCCCGCTCTCCGCTCATATGGTTTTTGNCTGTGAAGATATTTTTCACATACAGATTAAAGAGNAAACTTTCCTTGCTAGTAAA-GTTTT---------TTTT--C-TAATTGTTAGAACAAACTGAAACACATTGGTTTGTACAGTTATTGTATAACTTACCGGTATTTGATACGA-----AAAATATATTTGAAAA----AAAATGTTATATCAGAA-TGTT-GTACA-A-CTACATCATAATTTGTA---TTTTTTACATNTGATTTTGTTAAACTGTTACAATGAAATAAAAAAAATACNAAACAATATTAGCTTTATATTGTGAAATTGAAAAAAAATNCAATGGTTATTATAAGCCAGTACAGCATTGTTAAACTATAGATCTACTATACTTTGTATAACAACTTAGTGAATATNCATATTCATTTAGGTCAAAACAATGCCGTCATCACAATGAAATGGTATATGGCGCACTTTATGATCTTGGTCAT
12 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): CACGACTGATAGGCCAGTTTCTATTGGCTATTCATTAAAAGTCAGGACATCAGATAGGGTCTTGTGTCAAATGAACATTCAAAACAAAAGTGTCAGAACAGTGCAAAAAAGATGTTTGTCTTTGATATCAACTGTTTAAGAAATCCAATGAACATTCAAACTCAAAACGTGAAGATGCAAGATGTAACAT
Unaligned ( gi|7 ): ACCTTAATCATTGGAAAATGCTTCAAATGACTTTTTATGTTTTTGCTGATAGCCTGACAGTGAAAATATATGTACCACTGACAAATAATTAATGAACATGACATCAGACAGGGCTTTGTGGTATGTGAGCATTCAAAATAAAAGGGTCAGAACAC
Unaligned ( gi|9 ): AATGTTTTGATTGATATTCCAGTTTCCATTGGCCTATCATTAGAAAACATGACGTAAGCGAGGTTTTGTGGTTCCTGAACTATCAGAACAAGTGGATCAGACAAACACAAAGTTTTCTAGATATCCA
Unaligned ( gi|11 ): AAGACTGGGTTTGTGACATGTTAACTACCAACACAATAGTGTCAGAGCTGAGTGCAAACAAGCAAATGTGTTTCTTTGATACAAACTTTTTAAGAAACATCACAAACATTTTAACCTCTAA
Unaligned ( gi|12 ): AGACTGGGTTTGGGACATGTTAACTATCAACACAATAGTGTCAGAGCTGAGTGCAAACAAGCAAATGTGTTTCTTTGATACAAACTTTTTAAGAAACATCACAAACATTTTAACCTCTAA
Unaligned ( gi|13 ): CATAAACATGATGTCAGGCAAGGTTTGTTAAACATGAATATTCAAATCAAACGCTTCAGAACAGTGCAAAATGAATTCTGTTTTTTTTTAATGATACAAATTGT
Unaligned ( gi|14 ): TAATTAAAAGTCAGGGTGTGATTCTTGCTTTTGTGGCATGTCAACTATCAAAATAAAGGGATCAGAGCAGTGTAAAAAGATGTTTTTTTCTTTGA
Unaligned ( gi|15 ): TTTTCACTGACTAATCATTGATAATCATGACACAAAGCAAAGCTTTGTGAACTACCAAAACAAAAGGGTCAGAACAGA
Unaligned ( gi|16 ): CAGAACAGTGAAAAAGGACACTTTGTTTTTCTTTGATATGGACTGTTTAAAAAGTGACATGAACAGTTGACACT
Unaligned ( gi|17 ): TGCTATACCGGTTTTCATTGGCTTATCATAAAGAAACATGGCGTCGTGCGGGGCTTTATAAACGGTCAAAACA
Unaligned ( gi|18 ): TTGATACTGACTGTTTAAGAAACATCACCAACAGTTAAAACTCTAACT
Unaligned ( gi|19 ): TTTTAAATAGTGTCTCCTTTATGTTTGTATA
Alignments
lowQualScore : 22222 4444444444 3333333 22222 1 1 1 222 11 1 222 1 22222 11 11 1 33333333 333333333 1 11 1 222222222 55555555555555555 33333333 66666666666666666666666 222 999999999999999999999 55555555 2222 2222 4444444444444444 222 1 1 1 888888888888888888888888 2222 33333333 1
lowQualScore : 66666 1 1 2222222222 2222222 1 77777 5 5 1 1 1 1 1 5 1 111 88 5 000 1 1 5 77777 88 22 1 22 66 1 1 5 55555555 999999999 5 1 88 1 1 1 1 5 1 1 777777777 1 00000000000000000 44444444 1 22222222222222222222222 1 444 111111111111111111111 11111111 2222 1111 5555555555555555 333 1 6 7 1 5 5 5 1 000000000000000000000000 4444 55555555 1 5
lowQualScore : ..... . . .......... ....... . ..... . . . . . . . . . ... .. . ... . . . ..... .. .. . .. .. . . . ........ ......... . . .. . . . . . . . ......... . ................. ........ . ....................... . ... ..................... ........ .... .... ................ ... . . . . . . . . ........................ .... ........ . .
lowQualScore : 55555 0 0 5555555555 5555555 0 00000 5 5 0 0 0 0 0 5 0 555 00 0 555 0 0 5 00000 00 00 0 00 55 0 0 0 00000000 000000000 5 0 33 0 0 0 0 5 0 0 555555555 0 00000000000000000 55555555 0 55555555555555555555555 0 333 333333333333333333333 00000000 0000 2222 0000000000000000 333 0 7 3 0 0 5 0 0 000000000000000000000000 0000 00000000 0 5
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCATGTATACGTATAATTCTTATAATATTTTTATGAATANTATTTGATATTGTACCATATNGCTATAATAAAAAAATTTAGAAGTTTCTGTCAAAAGTAATTAATACAGNTATTATGATTAGATAAATAATCACTTGTATATAGACNGNCCTTNGTTTTATCAAANCGTNCAGGTAGATAAGCCTACAGTNATGGGGTGTCACATATTATGTTGTACATCCTGGACTGGAAGGTAATATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAATGAAGGTTAAGAGCAGTTAGGACATNAGNAGATAAGAAAGTTAAATAGGNNACATAAATTCTNTAAATCAAAACAGATAATGCTGCATAGTCTTTCNNTGAGATAANAATATANTATACGAGTATGTAACATACAACATNTATGTCTATGATGGTTATGATGAATACTTCTATGAAGTTATCCCATTTAGTTTNT--AACGCACTGAGNGCGGGTTTTTGTTTCACCAACACCTTCNTTGGNTTACTGTCTTAACTGATTTTAGAATGNTGGTTCGCCTATTCTGTAACNAGTNGGACTTAAATGTACTGCAATTCTACAGAATCAAGTGCAAAAACACNGTTACCTAGAATATATTTCTGTAAACTTATGTTTCCTTGAGGTACTAGTGCGAATGACCGAGTTTGTGTTGGTGAGGCGTTAGCCCGCTCTCCGCTCATATGGTTTTTGNCTGTGAAGATATTTTTCACATACAGATTAAAGAGNAAACTTTCCTTGCTAGTAAA-GTTTT---------TTTT--C-TAATTGTTAGAACAAACTGAAACACATTGGTTTGTACAGTTATTGTATAACTTACCGGTATTTGATACGA-----AAAATATATTTGAAAA----AAAATGTTATATCAGAA-TGTT-GTACA-A-CTACATCATAATTTGTA---TTTTTTACATNTGATTTTGTTAAACTGTTACAATGAAATAAAAAAAATACNAAACAATATTAGCTTTATATTGTGAAATTGAAAAAAAATNCAATGGTTATTATAAGCCAGTACAGCATTGTTAAACTATAGATCTACTATACTTTGTATAACAACTTAGTGAATATNCATATTCATTTAGGTCAAAACAATGCCGTCATCACAATGAAATGGTATATGGCGCACTTTATGATCTTGGTCAT
Reference ( family-2402 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCATGTATACGTATAATTCTTATAATATTTTTATGAATANTATTTGATATTGTACCATATNGCTATAATAAAAAAATTTAGAAGTTTCTGTCAAAAGTAATTAATACAGNTATTATGATTAGATAAATAATCACTTGTATATAGACNGNCCTTNGTTTTATCAAANCGTNCAGGTAGATAAGCCTACAGTNATGGGGTGTCACATATTATGTTGTACATCCTGGACTGGAAGGTAATATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAATGAAGGTTAAGAGCAGTTAGGACATNAGNAGATAAGAAAGTTAAATAGGNNACATAAATTCTNTAAATCAAAACAGATAATGCTGCATAGTCTTTCNNTGAGATAANAATATANTATACGAGTATGTAACATACAACATNTATGTCTATGATGGTTATGATGAATACTTCTATGAAGTTATCCCATTTAGTTTNT--AACGCACTGAGNGCGGGTTTTTGTTTCACCAACACCTTCNTTGGNTTACTGTCTTAACTGATTTTAGAATGNTGGTTCGCCTATTCTGTAACNAGTNGGACTTAAATGTACTGCAATTCTACAGAATCAAGTGCAAAAACACNGTTACCTAGAATATATTTCTGTAAACTTATGTTTCCTTGAGGTACTAGTGCGAATGACCGAGTTTGTGTTGGTGAGGCGTTAGCCCGCTCTCCGCTCATATGGTTTTTGNCTGTGAAGATATTTTTCACATACAGATTAAAGAGNAAACTTTCCTTGCTAGTAAA-GTTTT---------TTTTC---TAATTGTTAGAACAAACTGAAACACATTGGTTTGTACAGTTATTGTATAACTTACCGGTATTTGATACGA-----AAAATATATTTGAAAA----AAAATGTTATATCAGAA-TGTT-GTACA-A-CTACATCATAATTTGTA---TTTTTTACATNTGATTTTGTTAAACTGTTACAATGAAATAAAAAAAATACNAAACAATATTAGCTTTATATTGTGAAATTGAAAAAAAATNCAATGGTTATTATAAGCCAGTACAGCATTGTTAAACTATAGATCTACTATACTTTGTATAACAACTTAGTGAATATNCATATTCATTTAGGTCAAAACAATGCCGTCATCACAATGAAATGGTATATGGCGCACTTTATGATCTTGGTCAT
gi|1 : ACCATGTA-----ATAATTCTTATAATATTTTTATGAATAATATTTAATATTGTACCATATTGCTATA----------TTAGAAATTTCTGT-------AATTAATACAGTTATTATGATTAGATAAATAATCACTTGTATATAAACAATCCTTAGTTTTATCAAAACGTACAAGTAAATAAGCCTATAGTCATGAGGTGTCACA---TATGTTGTACATCTTGGACTGGAAGGTAATATTA
gi|1 : ctgcacttaaaaacttgaataatacagagacggttttttccccaaatttacttgcattaattttattcatcctatgtcgcactataatgagtaaggccttaggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgtcGAAATGAAGGTTAAGA-TAGTTAGGACATAAGGAGA-AAGAAAGTTAAATAGGGAACATAAATTCTTTAAATCAAAACAGATAATACTGCATAGTCTTTCTTTGAGATAAAAATATAGTATACAAGTATGTAACATACAACATCTATGTTTATGATGGTTATGATGAATACTTCTATGAAGTTATCTTATTTAGTTTTTTCAACGCACTGAGTGTGGGTTTTTGTTTCACCAACACCTTCATTGAATTACTGTCTTAACTGATTTTAGAATGTTGGTTTGCCTATTCTGTAACCAGTTGGAC----AT---TTGCAATTCTACAGAATCAAGTGCAAAAACACTGTTACCTAGAATATATTTCTGTAAACTTATGTTTCCTTGAGGTACTAGTGCGAATGACCGAGTTTGTGTTGGTGAGGCGTTAGCCTGCTCTCTGCTCATATGGTTTTTGACTG----AAT----------------TTAAAGAGAAAACTTTCCTTGCTAGTAAATGTTTT---------TTTTCTCTTAA-TGTTAGAACAAACTGAAACACATTGGTTTGTACAGTTATTGTATAACTTACCGGTATTTGATAC-------AAAATACAT---AAAA----AAAATGTTATATCAG--------------A-CTACATCATAATTTGTA---TTTTCTACATTTGATTTTGTTTAA-TGTTACAATGAAATAAAAAAAATACCAAA-AA-ATTAGCTTTATATTGTGAAATTGAAAAAAAATCCAATGGTTATTATAAGCCAGTACAGCATTGTTAAACTATAGATCTACTATACTTTGTATAACAACTTAGTGAATATTCATATTCATTTAGATCAAAACAATGCCGTCATCACAATGAAATGGTATATGGCGCACTTTATGATCTTGGTCATgtgccagaatgtttgcacagtagttgtcacaaattgggtacatcctgtatagtgtaaatgctaagttgtttgagtgatgggtataagtagttaatgaatggaactgaccaatgaaagaaaggattcattaggttgttagggagtttaaagactatgagagagatgactgagtgatactaaatatgggaagagtctgagaagaaagagtgtgaaatatgaaagtatgtaggtagtaagaaaagggagattgaaaggttaagtaaggaaaaagagattgagggattaaaaggagatagtaggttgagaaatgaaggttaagatagttaggacataaggagaaagaaagttaaatagggaacataaattctttaaatcaaaacagataatactgcatagtctttctttgagataaaaatatagtatacaagtatgtaacatacaacatctatgtttatgatggttatgatgaatacttctatgaagttatcttatttagttttttcaacgcactgagtgtgggtttttgtttcaccaacaccttcattgaattactgtcttaactgattttagaatgttggtttgcctattctgtaaccagttggacatttgcaattctacagaatcaagtgcaaaaacactgttacctagaatatatttctgtaaacttatgtttccttgaggtactagtgcgaatgaccgagtttgtgttggtgaggcgttagcctgctctctgctcatatggtttttgactgaatttaaagagaaaactttccttgctagtaaatgttttttttctcttaatgttagaacaaactgaaacacattggtttgtacagttattgtataacttaccggtatttgatacaaaatacataaaaaaaatgttatatcagactacatcataatttgtattttctacatttgattttgtttaatgttacaatgaaataaaaaaaataccaaaaaattagctttatattgtgaaattgaaaaaaaatccaatggttattataagccagtacagcattgttaaactatagatctactatactttgtataacaacttagtgaatattcatattcatttagatcaaaacaatgccgtcatcacaatgaaatggtatatggcgcactttatgatcttggtcat
gi|10 : ctgcacttaaaaacttgaataatacagagacggttttttccccaaatttacttgcattaattttattcatcctatgtcgcactataatgagtaaggccttaggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgtcaccatgtaataattcttataatatttttatgaataatatttaatattgtaccatattgctatattagaaatttctgtaattaatacagttattatgattagataaataatcacttgtatataaacaatccttagttttatcaaaacgtacaagtaaataagcctatagtcatgaggtgtcacatatgttgtacatcttggactggaaggtaatattagtgccagaatgtttgcacagtagttgtcacaaattgggtacatcctgtatagtgtaaatgctaagttgtttgagtgatgggtataagtagttaatgaatggaactgaccaatgaaagaaaggattcattaggttgttagggagtttaaagactatgagagagatgactgagtgatactaaatatgggaagagtctgagaagaaagagtgtgaaatatgaaagtatgtaggtagtaagaaaagggagattgaaaggttaagtaaggaaaaagagattgagggattaaaaggagatagtaggttgaTTATAT-TAGACTGGCCTTTGTTTTATCAAACTGTTC-GGTAGATAAGTTTACAATAATGGAGTGTCACATATTATGTTGTACATCCTGGACTGGAAAGTAATATTA
gi|2 : CTTTCCTTGCTAGTAA---TTTT---------TTTTAATGTAATTATTAGAACAAACTGAAATACATTGGTTTGTACAGTTATTGTATAACTTACCGGTATTCAACA-AA-----AAAATATA----AAAA----AAtaagaattattacatggttg
gi|2 : ATTTACAAATATGAAAATATTATATCAGAA-TGTTTGTATA-AACTGCATCATAATTTGCAATTTTTTTTACTTCTGATTTTGTGAAACTGTTACAATGAAATAAAAAAA-TACAAAACAATATTAGCTTTATATTGTGAAATT-AAAAAAAATGCA------------------------ATTGTTAAACT----ATCTACTATACTTTGTATAACA--------AATATACATATTCATTTAGGTCAAAACAATGCCGTCATCACAATGAAATGGTATATGGCGC-CTTTATGATCTTGGTCATcaaaagaactcagagttaataaatttactaaagaacctgaaaagtttgcctcttattaatttacaaatatgaaaatattatatcagaatgtttgtataaactgcatcataatttgcaattttttttacttctgattttgtgaaactgttacaatgaaataaaaaaatacaaaacaatattagctttatattgtgaaattaaaaaaaatgcaattgttaaactatctactatactttgtataacaaatatacatattcatttaggtcaaaacaatgccgtcatcacaatgaaatggtatatggcgcctttatgatcttggtcattgaaaatgattcaattagagctgtatgttttgactgatagaccggttaccattgtctaattattaacaactatggcagggagacagtgtgacctttctaagataaagggtcagaacagtgcaaaaagaatagcgttttctttgatatagactgtttaagtaacccaacgaaaattcatata
gi|3 : ctttccttgctagtaattttttttaatgtaattattagaacaaactgaaatacattggtttgtacagttattgtataacttaccggtattcaacaaaaaaatataaaaaaacaaaagaactcagagttaataaatttactaaagaacctgaaaagtttgcctcttatta--AACACACTGAGGGCGGGTTTTTGTTTCACCAACACTTTCTTTGGTTTACTGTCTTAACTGATTTTAGAATGATGGTTCGTCTAT-CTGTAACAAGTGGGACTTAAATGTACTGCAATTCTACAGAATCAAGTGCAAAAACACGGTTACCTAGAATATAT------------AT---TCCTTGAGGTATTAGTGTGA--------GTTTGTATTGGTGAGGTGTTAGCCCGCTCTCCGTTTATATGGTTTTTGTTTGTGAAGATATTTTTCACATACAGATTAAAAAGCAAACTTACCTTGCTAGTAAA-AATTTAAAAAAGAATTT--------TTGTTAGTACAAACTGAAACACATTGGTTTGTACATTTATTGTATTACTTACCGGTATTTGAtgaaaatgattcaattagagctgtatgttttgactgatagaccggttaccattgtctaattattaacaactatggcagggagacagtgtgacctttctaagataaagggtcagaacagtgcaaaaagaatagcgttttctttgatatagactgtttaagtaacccaacgaaaattcatata
gi|4 : ATCGGTTTGTACAGTTATTGTACAACTTACCGGTATTTAATACGAATAACAAAATATATTTGAAAA----CAAA
gi|4 : AAATGTTATATCAGAAATGTT-GTACATA-CTACATCATAATTTGTA---TTTTTTACATATGATTTTGATAAACTGTTACAATGAAATAAAAAAAAacaaaaacaacaacaacaaaactcagagttaataaatttactaaaaaatctggaaaatttatctcttaatttacaaatatgcaaatgttatatcagaaatgttgtacatactacatcataatttgtattttttacatatgattttgataaactgttacaatgaaataaaaaaaact
gi|6 : atcggtttgtacagttattgtacaacttaccggtatttaatacgaataacaaaatatatttgaaaacaaaacaaaaacaacaacaacaaaactcagagttaataaatttactaaaaaatctggaaaatttatctcttaatttacaaatatgcGAAATGA--GTTAAAAGCAGTTA---TATCAGTAAATAAG-----TAAAT--GTTACATAAATTCTATAAATCAAAATAGATAATGTTGCATAGTCTTTCAGTGAGATAAT-ATATATTATACGAGTATGTAACATACAACATATATGTCTAT-AT--------TGAATACTTC-A-------ATCCCA-TTAGTTTAT--AACGCct
gi|8 : ATGTATACGTATAATTCTTATAATATTTTTATGAATACTATTTGATATTGTACCATATGGCTATAATAAAAAAATTTAGAAGTTTTTGTCAAAAGTAATTAATACAGATAT-----TTAGA-AAATAATCATTTGTg
12 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): CACGACTGATAGGCCAGTTTCTATTGGCTATTCATTAAAAGTCAGGACATCAGATAGGGTCTTGTGTCAAATGAACATTCAAAACAAAAGTGTCAGAACAGTGCAAAAAAGATGTTTGTCTTTGATATCAACTGTTTAAGAAATCCAATGAACATTCAAACTCAAAACGTGAAGATGCAAGATGTAACAT
Unaligned ( gi|7 ): ACCTTAATCATTGGAAAATGCTTCAAATGACTTTTTATGTTTTTGCTGATAGCCTGACAGTGAAAATATATGTACCACTGACAAATAATTAATGAACATGACATCAGACAGGGCTTTGTGGTATGTGAGCATTCAAAATAAAAGGGTCAGAACAC
Unaligned ( gi|9 ): AATGTTTTGATTGATATTCCAGTTTCCATTGGCCTATCATTAGAAAACATGACGTAAGCGAGGTTTTGTGGTTCCTGAACTATCAGAACAAGTGGATCAGACAAACACAAAGTTTTCTAGATATCCA
Unaligned ( gi|11 ): AAGACTGGGTTTGTGACATGTTAACTACCAACACAATAGTGTCAGAGCTGAGTGCAAACAAGCAAATGTGTTTCTTTGATACAAACTTTTTAAGAAACATCACAAACATTTTAACCTCTAA
Unaligned ( gi|12 ): AGACTGGGTTTGGGACATGTTAACTATCAACACAATAGTGTCAGAGCTGAGTGCAAACAAGCAAATGTGTTTCTTTGATACAAACTTTTTAAGAAACATCACAAACATTTTAACCTCTAA
Unaligned ( gi|13 ): CATAAACATGATGTCAGGCAAGGTTTGTTAAACATGAATATTCAAATCAAACGCTTCAGAACAGTGCAAAATGAATTCTGTTTTTTTTTAATGATACAAATTGT
Unaligned ( gi|14 ): TAATTAAAAGTCAGGGTGTGATTCTTGCTTTTGTGGCATGTCAACTATCAAAATAAAGGGATCAGAGCAGTGTAAAAAGATGTTTTTTTCTTTGA
Unaligned ( gi|15 ): TTTTCACTGACTAATCATTGATAATCATGACACAAAGCAAAGCTTTGTGAACTACCAAAACAAAAGGGTCAGAACAGA
Unaligned ( gi|16 ): CAGAACAGTGAAAAAGGACACTTTGTTTTTCTTTGATATGGACTGTTTAAAAAGTGACATGAACAGTTGACACT
Unaligned ( gi|17 ): TGCTATACCGGTTTTCATTGGCTTATCATAAAGAAACATGGCGTCGTGCGGGGCTTTATAAACGGTCAAAACA
Unaligned ( gi|18 ): TTGATACTGACTGTTTAAGAAACATCACCAACAGTTAAAACTCTAACT
Unaligned ( gi|19 ): TTTTAAATAGTGTCTCCTTTATGTTTGTATA