lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 8888 2 8888888888888888888888888888888888888888888888888888888888888888888888888 1 1 1111111 11111 1111111 11111111 1 1 1 55555555555555555555555555555555555555555555555555555555 1111111111111 111111 2222222222 111111 11 2222222 2222222222222 1 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1 222222222222222 444 111 1111 1 11 11 1
lowQualScore : 5555 6 4 0 2222222222222222222222222222222222222222222222222222222222222222222222222 5 5 3 66 1111111 2 6 1 4 5 7 5 2 9 6 0 44444 8 4 4 3333333 66 3 33333333 8 3 5 55 6 1 4 4 3 0 88888888888888888888888888888888888888888888888888888888 6666666666666 111111 3333333333 2 111111 4 33 0 4 0 5 777 6666666 777 1 4444444444444 0 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 3 5 444444444444444 88 000 777 8 5 5 0000 8 2 6 3 0 5 0 3 8 5 33 66 5 0 4 1
lowQualScore : .... . . . ......................................................................... . . . .. ....... . . . . . . . . . . . ..... . . . ....... .. . ........ . . . .. . . . . . . ........................................................ ............. ...... .......... . ...... . .. . . . . ... ....... ... . ............. . ........................................................................................................... . . ............... .. ... ... . . . .... . . . . . . . . . . .. .. . . . .
lowQualScore : 0000 0 0 0 0000000000000000000000000000000000000000000000000000000000000000000000000 4 0 7 99 9999999 5 0 0 7 7 5 2 5 0 7 2 11111 6 0 0 0000000 99 9 22222222 7 6 0 00 6 0 2 5 3 0 44444444444444444444444444444444444444444444444444444444 2222222222222 555555 0000000000 5 888888 0 11 4 0 4 0 888 0000000 888 0 4444444444444 2 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 0 0 111111111111111 00 000 555 8 0 0 6666 5 9 0 7 6 7 7 0 4 9 88 66 0 7 3 4
consensus : NAAAGTTAATTA----AGTCAACAGTGATAAACTGGTATGGAAATTTTATTTTAATTTCAAATGCTNTATATATTTTGTTTACGGTGAGTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNANC-ATCAAAACCCTCAAAATCATCTCCTTCGTTATCGCTNC-CAAGCAACGATAACACGTTCTCAACCCC-TTCTCACCAACNAGGTTCTNAACACCTACTTAAACGTGTCACTATT-----GNC-AC-TT-------GTCAAACGGTATTCGCGCTCTTT--------AATTCAAGATCAAAGAGATGTCAATTAGTTTCAATT-AACAGAGTGATAATCCGACAGCAGTAAAGGACGAGGAAAGTACAAGTGGGCGGAGTCA-------A---------------ATTGGC------------G-C------------CGCC---G---------AACACC------TGCACA----------ATTTTNTTNT----CCCAA-AT-TTTTAAATTCGTTT-TGTGTTAT-TTTTAATCAATAAA---C--CGA--TA---ATAATTAT-------------TCATAATTGTAAAAA-A---A--A--A-----A-----GCAAT----AC----ATNTTCGT--AAA---A-A----TA---NT----A-------------AT-ATN------T--------ATTACATTAAACACCATACAATTATCCCGTTNAATGGCGAGCATAAAAAATAGTGAATTGAACAGAATTTGA---ATATTTGCACCAGTCTAGTTA-ATAAA-TAGA----AGACTTCCGGTTTAGCGAAAAGTTTTGTTGTTTTCCCATTTGGAAGTTACAGAATACACA-ATAATACCAAAAAGGGTTTATAAACTGCGTTTATTNAATAGAAATCATAAAATATAAAGCATGTAAGACATGTTTAAAACT--CTGTGTGCTTTTTGCACTACGTTCAGGATGATAGGCGTCAGAAATACTGTTGTCGACTGGCCTTT
Reference ( gi|2 ) : TAAAGTTAATTATTAAAGTCAACAATGATAAACCGGTATGGAAATTTTATTTTAATTTCAAATGCTATATATATTTTGTTTATGGT-AGTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-ATCAAAACCCTAAAAAGCATCTCCTTCATTATCGATGC-CAAGCAGCGATAACACGTTCTAAACCCC-TTCTTACCAACGAGGTTCTGAACACCTACCTACACATGTCACTATT-----GAC-AC-TT-------GTCAAACGGTATTCGCGCTTTTT--------AATTTAAGATCAAAGAGATGTCAATTAGTTTAAATT-AACAGAGAGATAATCCGACAGCAGTAAAGGATAAGGAAAGTACAAGGGGGCGGAGTCA-------A---------------ATTAGC------------A-T------------CGCC---G---------AACACC------TGCACA----------ATTTTGTTCT----CCCAA-AG-TTTTAAATTTGTTT-TGTGTTAT-TTTTAATCAATAAA---C--CAA--TA---ATAATTAT-------------TCATAATTGTAAAAA-A---A--A--A-----A-----GCAAT----AC----ATTTTTGT--AAA---A-A----TA---GT----A-------------AT-ATA------T--------ATTACATTAAACACCATACAATTATCGCATTAAACGGCGAGCATAAAAAATAGCAAATTTTTCAGAATTTGA---ATATTTGCACCAGTCTAGTGA-ATAAA-TAGA----AGACTTTCAGTTCAACGAAAAGTTTTGTTGTTTTCCCGTTTGGAAGTTACAGAATACACA-ATAATACCAAAAAGGGTTAATAAACTTTGTTTATTTAATAGAAATCATAAAATATAAAGCATGTAAGACATGTTTAAAACT--CTGTTTGCTTTTTGCACTACGTTCAAGAGGATAGGCATCAGAAATACTGTTCTCGGCTGGCCTTT
gi|4 : AAAGTTAATTA----AGTCAACAATGATAAACTGGTATGGAAATTGTATTTTAATTTCAAATGCTATGTATATTTTGTTTATGGT-AGTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACT-ATCAAAACCCTTAAAATCATCTCCTTC------------CAAGCAACGATAACACGTTCTAAACCCC-TGCTCACCAACAAGGTTCTGAACACCTACATACATGTGTCACTATT-----GAC-AC-TT-------GTCAAACGGTATTCATGCTTTTT--------AATTCAAGATCAAAG-------------TTTCAATT-AATAGAGTGATAATCCGACAGCAGTAAAAGACAAGGAAAGTACAAGTGGGCGGAGTCA-------A---------------ATTAGC------------G-T------------CGCC---A---------AACACC------TGCACA----------ATTTTGTTCT----CCCAA-AG-TTTTAAATT---------GTTATATTTTAATCAATAAA---C--CGA--TA---ACAATCAT-------------TCATTATCGT-AAAA-G---A--A--A-----A-----GCAAA----AC----ATAATTGTAAAAA---A-A----TA----T----A-------------AT-ATA------T--------ATTACATTAAACACAATACAATTATCCCATTAAACGGCGAGCTTAAAAAATAGCGAATTTAACAGAATTTGA---ATATTTGCACCAGTCTAGTGA-ATAAA-TAGA----AGACTTCCGGTTTAGCGAAAAGTTTTGTTGTTTTCCTATTTGGAAGTTACAGAATACACA-ATAATACCAAAAAGGGTTTATAAACTTTGTTTA-TTAATTGAACTTATAAAATATTAAGCATGTAAGACTTGTTTAAAACT--TTGTGTGCTTTTTGCACTACGTTCAAGATGATAGGCATCAGAAATACTGTTCTCGGCTGGCCTTT
gi|11 : AAAGTTAATTA----AGTTAACAGTGATAAACTGGTATGGAAGTTTTGTTTTAATTTCAAATGCTATATATATTTTGTTTCTGGT-AGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTACCAAAACCCTCAAAATCATCT---TCGTTATTGCTGC-CAAGCAACAATAACACGTTCTAAACCCC-TTGTCACCAACGAGGTTCTGAACACCTACATACACGTGTCACTATT-----
gi|22 : AAATTTTATTTTAATTTCAAATGCTTTATATATTTTGTTTACGGTGAGTAT
gi|21 : AAATTTTATTTTAATTTCAAATGCTTTATATATTTTGTTTACGGTGAGTATgca
gi|5 : -ATCAAAACCTTCAAAATCATCTCCTTCATTATCGCTGC-CGAGCAAAGATAACACGTTCTAAACCCC-TTCTCACCAATGAGGTTCTGAACACCTACATACACGTGTCACTATT-----GAC-AC-TT-------GTCAAATGGTATTCACGCTTTTT--------AATTTAAGATCAAAGAGATGTCAATTAGTTTCAATT-AACAGAGTGATAATCCGACAGCAGTAAATGAAAACTAAAGTACAAGTGGGCAGAGTAA-------A---------------ATTAGC------------A-T------------CGCT---G---------AACACG------TGCACA----------ATTTTGTTCT----CCCAA-AA-TTTTTAATTTTTTA-TGTGTTAT-----AATCAATAAA---C--CGA--TA---ATGATTAT-------------TCATAATTGTAAAAG-G---A--A--------------GCAAA----AC----ATAGTTGT--AAA---AAA----TA---GT----A-------------AT-ATA------T--------ATTACATTAAACACCATACAATTATCCCATTACATGGCAAGCATAAAAAATAGCGAATTTAACAGAATTTGA---ATATTTGCACCAGTCTTGTGA-ATAAA-TAGA----AGACTTCCAGTTTAGCAAAAAGTTTTGTTGTTTTCCTGTTTGGAAGTTACAGAATACACA-ATAATACCAAAAAGGGTTCATAAACTTTGTTTATTAAATAGAAATCATAAAATATAAAGCATGTAAGACATGTTTAAAACT--TTGTGTGCTTTTTGCACTACATTCAGGATGATAGGCATCAGAAATACTGCTGTCTACTGGCTTgcaa
gi|8 : t-ATCAAAACCCTCAAAGCCATCTCCTTTGATGTCGCTTT-CAAGCAAC---AAAACGTTCTCA--CCC------ACCAGCTAGGTTCTCAACACCTACTCAAACGTGTCACTATT-----GCC-AC-TT-------GTCAAACGGTATTCATACTCTCT--------AATTCAAGATCAATGAGATGTCAATTAGTTTCAATT-AACAGAGTGATAATCCGACAGCAGTAAAGGACAAGGAAAGTATAAGTGGGCGGTGTCA-------A---------------ATTGGC------------A-C------------CACT---G---------AACACC------TGCACA----------ATTTTGTTGT----CCCAA-TT-TTTTAAATTCGTTT-TGCGTTAT-TTTTAATCGATAAA---C--TGA--TA---ATAATTAT-------------TCATATTTGTAAAAACA---ATGA--A-----A-----TTCAT----A-----ATTTTAG----AA---A-A----TA---GT----A-------------AT-AT
gi|20 : aagtttaaaatggtgttaccataataatttttatgtgtatttgagtaagatataagggacaataaaaactattgaccattttttaagtacatctatcaagaaatatttggaacctaaaaaatgaccatctccctctcactgtatctccatcattcagctgtctctgatgtctgactcAAACCCTCAAAATCATCTTCTTTGTTGTCGCTGT-CAcagtattttcatatatatatttctttattacattgaacacta
gi|23 : cccggatgtcggactcatcaaaccttcgtcTTCTTCACAATTTATCCTCA--CAATGATAACACATTCTCAATCCC-TTCT
gi|6 : CTTTACTATTTATCC-CCA-CAACGATAACACGTTATCAACCCC-TTCTCACCCACCAGGTTCTCAACACCTTCTCAGACATGTCACTATT-----GCC-AC-AT-------GTCAAACGATATTCATACTCGTT--------AATTCAAGATCAAAGAGATGTCAATTAGTTTCAATT-AACAGAGTGATAATCTGACGGCAGGAAAGGACGTGGAAAGTACAAGTGGGCAGAGTCA-------A---------------ATTGGC------------G-C------------CGCC---G---------ATCACC------TGCACA----------ATTCTCTTGT----CCCAA-AT-TTTTAAATTCGTTT-TGTAATAT-TCTTAATCAATAAA---C--TGA--TA---ATAATTAT-------------TCATTAGTGTTAAAA-ACTGA--A--ATTCATA-----GTAATATCAAT----ATTTTCAT----T---T-A----TA---TT-------------------T-CTT------T--------ATTACATTAAACCCCATACAATTATCCCGT---------------AAAAATAGTGAATTGAACAGGTGTTGAATTATATTTGTACCAGTCTAGTTA-ATAAA-TTGA----TGACTTCCGGTTTAGCGAAAAGTTTTGTTGTTTTCCCATTTGGAAGTTACAGAATACACA-ATAATACATCAAAGGGTTTGTAAACTACGTTTATTTAATACAAATAATAAAATATAAAGCATGTTAGACATGTTTAAGACT--TCATGTGCTTTTTGCACAACGTTCAGGATGATAGGCATCAGAAATACTGTTCTCGACTGGCCTTTc
gi|3 : tAACACATTCTCAACCCCCTTCTCACCCACCAGGTTCTCAACACCTACTCAAATGTGTCACTATTATATTGCC-AC-TT-------GTCAAACGGTATTCAC--TCTTT--------AATTCAAGATCAAAGTCATGTCAGTTAGTTTCACTT-AACAGAGTGATAATCCAACTGCAGTAAGTGATGAGGAAAGTACAAGTGGGCGGAGTCA-------A---------------GTTGGC------------G-T------------CGCC---G---------AACACC------TGCGCA----------ATTTTTTTGT----CCCAA-AT-TTTTAAATTTGTTT-TTTGTCAT-CTTTAATCGATAAA---C-------TG---ACAATTAT-------------T----ATTGT--AAA-A---A--A--T-----A-----GTAATATTAAT----ATTTTCAT----A---T-A----TA---TT-------------------T-CTT------T--------ATTACATTAAACCCCATACAATTATCCCGTTCAATGGCAGGCGT-AAAAATTGTGGATTGAACAGAATTTAA---ATATTTGCACCAGTCTAGTTA-ATAAA-TAGA----AGATTTCCTGTGTAACGATAGGTTTTGTTGTTTTCCAATTTAGAAGTTACAGAATACACATAAAATACAAAAAAGGGTTTATAAACTGTGTTTATTAAAAAGAAATCGTAAAATATAAAGCATTTAAGACATGTTTAAAACTTCCTG--TGCTTTTTGCCCTACGTTCAATATGATAGTCGTCAGAAATATTGTTGTCGACTGGACTTT
gi|12 : tgctactataaaatggtgttaccgttataacttttatgtgtaagtgtatttgggtaagataaagggaaaataaaaacaaacttttaacatttttttaagtgcatctttctagaaatatctgggtcctaaaaaggaccatcaccgtctcactgtatctgcatcattcagcagtctctgatgtccgacttgtcaaaaccctcaaagtcatctcAACACCTACTTTAACTTGTCACTGGT-----GTC-AA-GT-------ATCAAATGGTATTCATACTCTTT--------AATTGAAGATTAAAGAGATTTGTATTACTT----TT-AGCAT---GATAATTTGAGAGCATGATAGGATAGGGAAAGGACAAGGGGGCAT-GTCAATTTTGTA---------------ATTGGC------------A-TGAAATTTACTACTGCT---GAACAATAATAACACC------TATATATACCTTTTGTGTTTTGTTTT----TCCAACAT-TTTTACATCTGTTT-
gi|14 : CTATTTAAACATGTCACTATTTG---GATAACGTTATTAAGCATCAAACAGTATTCGCACACTCTCACAGTCAAACTGAACATCAAAGCAATGT--ATTAGTGTCGATGAAACAATGTGATATACTGACAG-AATTAAGGATGAGAAAGGAACAAGGGAGTGGAGCCA-------A---------------TTT
gi|9 : aaCTTAAACATGTTAGTATT-----GTC-AA-GT-------ATGGAAGGGAATTTGCGCTCTTT--------AATTGAAGATC-AAGAGA--TCAATTAGTTTCAATT-AGTGCACTTATAATCTCACAGCAGGAAAGGACAAGGGAtttgattgccatgta
gi|7 : ACATGTCACTTTT-----GTC-AC-TT-------ATCAAATGGTATTTG---------------------AAGATCAAAGAGATGTCAATTAGTTTCAATC-AACAGAGTGATAATCTGACAGCAG----------GGAAGG-ACGAGTGGGCGGAGTCA-------ATTTTGTA--------ATTGGCTTGTAATTT---A-C------------TGCCACTG---------GACACC------TGCACA----------ATTTTGTTAT----CCCAG-AT-TTTTAAATTTGTTT-TGTGTTAT-TTTTAATCAATAAA---C-------------TTTCTAT-------------TCATAATTGTAAAAT-A---A--A--T-----G-----GAAAT----TC----ATAATTGT--AAA---A-AATATTAAGTGT----ACATCAATATTTTCAT-ATA------TATTTCTTTATTACGTTAAACACCACACAATTAACCCATTAAATGACGAGCAT-AAAAATAGTGAATTAAACAGAGTATGA---ATATTTGCACCAGTCTAGTTA-ATAAA-TAGA----AGACTTCCGGTTTAAGGAAGAGTTTTGTTGTTTTCACATTTGGAAGTAACAGAATACACA-ATAATACCAAAAGTGGTTTATAAACTGTGTTTATTAAATTGAAATCATAAAATATAAAAAATGCAAGACATGTTTAAAACTTCCTGTT--CTTATTGCACTACGTTCAAGATGATGGTCGTCAGAAATGCTGTTGTTGATTTGCCTTTgaggtggggtgggttagtgttagtggtggaggggggtgtagggggatgggtcggagtcagttttgtaattggcatgcaattaacagccgccaaacattgacaaatgcacataactttcttttttgtcatagagttttaaatttgtttatgtaaattttcaatccataaactgttgtttttttcatagctataaaaaaaatcttacaatatttacatatatatatttaatgacaaccataaaaatagtgaattgatcaggatttaaatatttgtaccagtctagttatacacattatattatagacttgcagtgta
gi|1 : aaACATGTCGTTATT-----GTC-AC-TT-------ATCAATTGGTATTCGCAGTCTTT--------AAATGGATATGAAAGAGATGTCAATTTGTTTCAAT--------------AT--GACAGCAGGAAAGGACGAGGAAA---CAAGTAGGCGGAGTCA-------ATTTTGTAATTGCGTAATTGACTTGCAATCTACTA-C------------CGCC---G---------AACACC------TGCACA----------ATTTTTTTTG----TCCAA-GGGTTTTAAATTCGTTT-TGTGTTAT-TTTTAATCAATAAAATGCTACAAGTTATTCATAATTGTAAAAATGGTAACTTTATACTTGTAAAAA-A---T--ATTA-----ATTATGACAAT----ATGAATATTTCCAT--ATA---T-A----TA----T----A-------------TTTCTT------T--------ATTACATTAAGCACCGTACAATTATCCCAATTAATGATCAGCATAAAAA-TAGTGAGTTGAACAGTATTTGA---ATATGTGCACCAGTCTAGTTA-ATAAA-TAGA----AGACTTACCGTTTAACGAAAGGGTTTGTTTTTGTCTCATTTGGAAGTAATAGAATTCACA-TTAATACCAAAAATGGTTAATAAACTGTGTTTATTAAATAGAAATCATAAAATATAAAGAATGTAAGACAT--------TC--CTG--TGCTTTTTGCACTAGGTTCAAGATGGTAGTCGTCTGAAATACTGTTGTTGGTCGGCCT
gi|15 : atttgtgagtattaaaaggtgttaattgttttatttattataaattatgtgtgtctgtgtatttgggtaagacaaaaaggacaataaaaacaaactattgacaattctttattaagtacagcttttgagaaatatttgggtccttaaatggaccctcactcctcacattatctacattcttcagcagtcttggatgtccgactaatcaaacccctcaaaatcatcttcttcgaTT--------AATTCAAGATCAAAGAGATGT----TAGTTTCAATA-AACAGAGTGACAATCTGACAGCAGTAAAGGAGGCGGAAAGTACAAGTGGGTGGAGTCA-------A---------------ATTGGT------------G-C------------CGCC---G---------AACACC------TGCAAA----------ATTTTCTTGA----CCCAA-A--TTTTAAATTTGTTT-T
gi|9 : tcg-------A---------------ATTAAC------------AGC------------CGCC---A---------AACATTGACAAATGCACATA--------ACTTTCTTTTTTGTCATAG-AG-TTTTAAATTTGTTTATGTA-AAT-TTTCAATCCATAAA---C--TGT--TG---TT--TTTT-------------TCATAGCTATAAAAA-A---A--------------------------------ATCTT-----------------------AC----A-------------AT-AT-----------------TTACAT--------ATA----TAT---ATTTAATGACAACCAT-AAAAATAGTGAATTGATCAGGATTTAA---ATATTTGTACCAGTCTAGTTATACACATTATATTATAGACTTGCAGTtta
gi|10 : cttaaacatgttagtattgtcaagtatggaagggaatttgcgctctttaattgaagatcaagagatcaattagtttcaattagtgcacttataatctcacagcaggaaaggacaagggagaggtggggtgggttagtgttagtggtggaggggggtgtagggggatgggtcggagtcagttttgtaattggcatgcCAATAAA---C--TGA--TA---ATAATTAT-------------TCATAAGTGT-TAAA-G---A--A--A-----T-----GAAAT----TC----A---TAGT--AAAATCA-A----TA---TTTTCAA-------------AT-ATATTTCTTT--------ATTACATTAAACCCCATACAATTATCCCGT---------------AAAAATAGTGAATTGAACAGATGTTGAATTATATTTGTACCAGTCTAGTTA-ATAAA-TTGA----TGACTTCCAGTTTAGAGAAAAGTTTTGTTGTTTTCCCATTTGGAAATCACAGAAAACACA-ATAATACATCAAAGAGTTTGTAAAGTGCGTTTATTTAACAGAAATAATAAAATATAAAGCATTTTAGACATGTTTAAAACT--TTGTGTGCTTTTTGCACTACGTTCAGGATGATAGGCATCAGAAATACTGTTCTCAACTGGCCTTgta
gi|17 : AATAGAAATCGTAAAATATTAAGGACATAAGACATGTTTTAAACT--
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): TTTGCGAATATATAAAGTGTTAAATGATTTATTTATTAAATGTGTGTTTGAATTTGGATACGGCTAAAGGGAAAATAAAAACAAACTATTGACAATTTTTTTAACACATCTTTCGAGATGTTTCTTCGGTCCTTAAAAGTCCCCTCACTCCTCTCTCCTTCAGCAATCTCGGGTGTCAGGCTTATCAAATCCTTCAAAATTATCTTCTT
Unaligned ( gi|16 ): TTTGCAAGTATAAAATGGTGGTACCATTTATTTACGTGTATTTGGGTAAGACAAAAGGGAAAATAAAAACAAACAATTGACAATTGTTTAAGTACATCTTTCGAGCAGTATTTGGGTCCTAAAAAGTACCACCACCCTCTTACTGTCCAATC
Unaligned ( gi|18 ): TTTGCAAATATATAATGGTGTTAATTATTGTATTTATTAATATGTGTGTGTAAACGGGTAAGACAAAAGGGAAAATAAAAACAAACTATTAACG
Unaligned ( gi|19 ): TAAGTGTATCTTTCGAGAAATATTTGGGTCCTAAAAGGACCCTCACTCCTCACTGTATCTACATCCTTTGGCAATCT
Alignments
lowQualScore : 2222 2 7777777777777777777777777777777777777777777777777777777777777777777777777 22222222 11111111 44444444444444444444444 777777777777 111111111 111111 2222222222 11 111111111111 333333333333333333333333333333 1 777777777777777777777777777777777777777777777777777777777777777777 1111111111
lowQualScore : 8888 0 1 0 1111111111111111111111111111111111111111111111111111111111111111111111111 0 33 0 99999 1 1 2 5 1 1 777 3 0 0 00000000 1 666 44 22222222 3 2 33 0 1 0 6666 3 3 44444444444444444444444 444444444444 444444444 000000 0000000000 1 1 7777 3 00 4 3 4 777 0 888888888888 333333333333333333333333333333 0 777 666666666666666666666666666666666666666666666666666666666666666666 0 5555555555 1 1 66 0 3 0 1 7 0 777 777 2 5 33 5 666 2
lowQualScore : .... . . . ......................................................................... . .. . ..... . . . . . . ... . . . ........ . ... .. ........ . . .. . . . .... . . ....................... ............ ......... ...... .......... . . .... . .. . . . ... . ............ .............................. . ... .................................................................. . .......... . . .. . . . . . . ... ... . . .. . ... .
lowQualScore : 3333 7 0 0 1111111111111111111111111111111111111111111111111111111111111111111111111 2 66 8 88888 4 4 5 0 0 0 888 3 2 1 44444444 0 444 55 11111111 1 5 88 1 0 4 5555 1 3 33333333333333333333333 555555555555 555555555 555555 9999999999 0 0 7777 6 22 7 6 4 000 9 888888888888 111111111111111111111111111111 9 000 333333333333333333333333333333333333333333333333333333333333333333 6 3333333333 7 7 00 9 7 9 8 3 1 888 888 2 0 44 9 444 5
consensus : NAAAGTTAATTA----AGTCAACAATGATAAACCGGTATGGAAATTTTATTTTAATTTCAAATGCTATATATATTTTGTTTACGGTGAGTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNANC-ATCAAAACCCTCAAAATCATCTCCTTCGTTATCGCTGCCAAGCAACGATAACACGTTCTNAACCCC-TTCTCACCAACGAGGTTCTNAA---CACCTACTT-AAACGTGTCACTATT--------GNCACT---TGTCAAACGGTATTCGCGCTCTTT--------AATTCAAGATCAAAGAGATGTCAATTAGTTTCAATT-AACAGAGTGATAATCCGACAGCAGTAAAGGACGAGGAAAGTACAAG----TGGG-CGGA-GTCA-------A---------------ATTGGC--G-------C-GCCGCCG---------AACACC------TGCACA----------ATTTTGTTNT----CCCAA-AN-TTTTAAATTCGTTT-TGTGTTAT-TTTTAATCAATAAAC---CGAT-A----------ATAATT---------------AT-------------TCATAATTGTAAAAAA---AA--A-----A-----G-------CAAT----AC----ATNTTCGTA-AA-A---A-TA-NT----AATAT--NT------ATTACATTAAACACCATACAATTATCCCGTTAAACGGCGAGCATAAAAAATAGCGAATTGAACAGAATTTGA---AT---ATTTGCACCAGTCTAGTTAATAAATAGAAGACTTCCGGTTTAGCGAAAAGTTTTGTTGTTTTCCCATTTGGAAGTTACAGAATACACA-ATAATACCAAAAAGGGTTTATAAACTGTGTTTATTNAATAGAAATCATAAAATATAAAGCATGTAAGACATGTTTAAAACTTCGTGTGCTTTTTGCACTACGTTCAAGATGATAGGCGTCAGAAATACTGTTNTCGACTGGCCTTT
Reference ( family-2020 ) : NAAAGTTAATTA----AGTCAACAGTGATAAACTGGTATGGAAATTTTATTTTAATTTCAAATGCTNTATATATTTTGTTTACGGTGAGTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNANC-ATCAAAACCCTCAAAATCATCTCCTTCGTTATCGCTNCCAAGCAACGATAACACGTTCTCAACCCC-TTCTCACCAACNAGGTTCTNAA---CACCTACTT-AAACGTGTCACTATT--------GNCACT---TGTCAAACGGTATTCGCGCTCTTT--------AATTCAAGATCAAAGAGATGTCAATTAGTTTCAATT-AACAGAGTGATAATCCGACAGCAGTAAAGGACGAGGAAAGTACAAG----TGGG-CGGA-GTCA-------A---------------ATTGGC------------GCCGCCG---------AACACC------TGCACA----------ATTTTNTTNT----CCCAA-AT-TTTTAAATTCGTTT-TGTGTTAT-TTTTAATCAATAAAC---CGAT-A----------ATAATT---------------AT-------------TCATAATTGTAAAAAA---AA--A-----A-----G-------CAAT----AC----ATNTTCGTA-AA-A---A-TA-NT----AATAT--NT------ATTACATTAAACACCATACAATTATCCCGTTNAATGGCGAGCATAAAAAATAGTGAATTGAACAGAATTTGA---AT---ATTTGCACCAGTCTAGTTAATAAATAGAAGACTTCCGGTTTAGCGAAAAGTTTTGTTGTTTTCCCATTTGGAAGTTACAGAATACACA-ATAATACCAAAAAGGGTTTATAAACTGCGTTTATTNAATAGAAATCATAAAATATAAAGCATGTAAGACATGTTTAAAACTCTGTGTGCTTTTTGCACTACGTTCAGGATGATAGGCGTCAGAAATACTGTTGTCGACTGGCCTTT
gi|1 : -ATCAAACCCCTCAAAATCATCTTCTTCG
gi|1 : atttgtgagtattaaaaggtgttaattgttttatttattataaattatgtgtgtctgtgtatttgggtaagacaaaaaggacaataaaaacaaactattgacaattctttattaagtacagcttttgagaaatatttgggtccttaaatggaccctcactcctcacattatctacattcttcagcagtcttggatgtccgactaCTCAAAATCATCTTCTTCGAACATGTCGTTATT--------GTCACT---TATCAATTGGTATTCGCAGTCTTT--------AAATGGATATGAAAGAGATGTCAATTTGTTTCAAT--------------AT--GACAGCAGGAAAGGACGAGGAAA---CAAG----TAGG-CGGA-GTCA-------ATTTTGTAATTGCGTAATTGACTTGCAATCTACTACCGCCG---------AACACC------TGCACA----------ATTTTTTTTG----TCCAA-GGGTTTTAAATTCGTTT-TGTGTTAT-TTTTAATCAATAAAA---TGCT-ACAAGTTATTCATAATT---------------GTAAAAATGGTAACTTTATACTTGTAAAAAA---TATTA-----ATTATGA-------CAAT----ATGAATATTTCCATA-TATAT--A-TA-TT------TCT--TT------ATTACATTAAGCACCGTACAATTATCCCAATTAATGATCAGCATAAAA-ATAGTGAGTTGAACAGTATTTGA---AT---ATGTGCACCAGTCTAGTTAATAAATAGAAGACTTACCGTTTAACGAAAGGGTTTGTTTTTGTCTCATTTGGAAGTAATAGAATTCACA-TTAATACCAAAAATGGTTAATAAACTGTGTTTATTAAATAGAAATCATAAAATATAAAGAATGTAAGACAT---------TCC-TGTGCTTTTTGCACTAGGTTCAAGATGGTAGTCGTCTGAAATACTGTTGTTGGTCGGCCTaacatgtcgttattgtcacttatcaattggtattcgcagtctttaaatggatatgaaagagatgtcaatttgtttcaatatgacagcaggaaaggacgaggaaacaagtaggcggagtcaattttgtaattgcgtaattgacttgcaatctactaccgccgaacacctgcacaattttttttgtccaagggttttaaattcgttttgtgttatttttaatcaataaaatgctacaagttattcataattgtaaaaatggtaactttatacttgtaaaaaatattaattatgacaatatgaatatttccatatatatatatttctttattacattaagcaccgtacaattatcccaattaatgatcagcataaaaatagtgagttgaacagtatttgaatatgtgcaccagtctagttaataaatagaagacttaccgtttaacgaaagggtttgtttttgtctcatttggaagtaatagaattcacattaataccaaaaatggttaataaactgtgtttattaaatagaaatcataaaatataaagaatgtaagacattcctgtgctttttgcactaggttcaagatggtagtcgtctgaaatactgttgttggtcggcct
gi|10 : atttgtgagtattaaaaggtgttaattgttttatttattataaattatgtgtgtctgtgtatttgggtaagacaaaaaggacaataaaaacaaactattgacaattctttattaagtacagcttttgagaaatatttgggtccttaaatggaccctcactcctcacattatctacattcttcagcagtcttggatgtccgactaatcaaacccCAATAAAC---TGAT-A----------ATAATT---------------AT-------------TCATAAGTGTTAAAGA---AA--T-----------G-------AAAT----TC----ATA---GTA-AA-ATCAA-TA-TTTTCAAATAT--ATTTCTTTATTACATTAAACCCCATACAATTATCCCGT---------------AAAAATAGTGAATTGAACAGATGTTGA---ATTATATTTGTACCAGTCTAGTTAATAAATTGATGACTTCCAGTTTAGAGAAAAGTTTTGTTGTTTTCCCATTTGGAAATCACAGAAAACACA-ATAATACATCAAAGAGTTTGTAAAGTGCGTTTATTTAACAGAAATAATAAAATATAAAGCATTTTAGACATGTTTAAAACTTTGTGTGCTTTTTGCACTACGTTCAGGATGATAGGCATCAGAAATACTGTTCTCAACTGGCCTT
gi|11 : AAAGTTAATTA----AGTTAACAGTGATAAACTGGTATGGAAGTTTTGTTTTAATTTCAAATGCTATATATATTTTGTTTCTGGT-AGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTACCAAAACCCTCAAAATCATCT---TCGTTATTGCTGCCAAGCAACAATAACACGTTCTAAACCCC-TTGTCACCAACGAGGTTCTGAA---CACCTACAT-ACACGTGTCACTATT--------
gi|12 : AA---CACCTACTT-TAACTTGTCACTGGT--------GTCAAG---TATCAAATGGTATTCATACTCTTT--------AATTGAAGATTAAAGAGATTTGTATTACTT----TT-AGCA---TGATAATTTGAGAGCATGATAGGATAGGGAAAGGACAAG----GGGG-C--ATGTCAATTTTGTA---------------ATTGGCATGAAATTTACTACTGCTGAACAATAATAACACC------TATATATACCTTTTGTGTTTTGTTTT----TCCAACAT-TTTTACATCTGTTT-
gi|14 : CTATTT-AAACATGTCACTATTTGGATAACGTTATTAAGCATCAAACAGTATTCGCACACTCTCACAGTCAAACTGAACATCAAAGCAATGT--ATTAGTGTCGATGAAACAATGTGATATACTGACAG-AATTAAGGATGAGAAAGGAACAAG----GGAG-TGGA-GCCA-------A---------------TTT
gi|15 : aaTCGTT--------AATTCAAGATCAAAGAGATGT----TAGTTTCAATA-AACAGAGTGACAATCTGACAGCAGTAAAGGAGGCGGAAAGTACAAG----TGGG-TGGA-GTCA-------A---------------ATTGGT------------GCCGCCG---------AACACC------TGCAAA----------ATTTTCTTGA----CCCAA-A--TTTTAAATTTGTTT-Ttttgattgccatgta
gi|17 : AATAGAAATCGTAAAATATTAAGGACATAAGACATGTTTTAAACTTCATGAGCAGATTGCACtta
gi|2 : tacaaaatagtacagatcctcaaaatttgtagggaaatcttcaggtcagttttatatacggAAAGTTAATTATTAAAGTCAACAATGATAAACCGGTATGGAAATTTTATTTTAATTTCAAATGCTATATATATTTTGTTTATGGT-AGTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-ATCAAAACCCTAAAAAGCATCTCCTTCATTATCGATGCCAAGCAGCGATAACACGTTCTAAACCCC-TTCTTACCAACGAGGTTCTGAA---CACCTACCT-ACACATGTCACTATT--------GACACT---TGTCAAACGGTATTCGCGCTTTTT--------AATTTAAGATCAAAGAGATGTCAATTAGTTTAAATT-AACAGAGAGATAATCCGACAGCAGTAAAGGATAAGGAAAGTACAAG----GGGG-CGGA-GTCA-------A---------------ATTAGC------------ATCGCCG---------AACACC------TGCACA----------ATTTTGTTCT----CCCAA-AG-TTTTAAATTTGTTT-TGTGTTAT-TTTTAATCAATAAAC---CAAT-A----------ATAATT---------------AT-------------TCATAATTGTAAAAAA---AA--A-----A-----G-------CAAT----AC----ATTTTTGTA-AA-A---A-TA-GT----AATAT--AT------ATTACATTAAACACCATACAATTATCGCATTAAACGGCGAGCATAAAAAATAGCAAATTTTTCAGAATTTGA---AT---ATTTGCACCAGTCTAGTGAATAAATAGAAGACTTTCAGTTCAACGAAAAGTTTTGTTGTTTTCCCGTTTGGAAGTTACAGAATACACA-ATAATACCAAAAAGGGTTAATAAACTTTGTTTATTTAATAGAAATCATAAAATATAAAGCATGTAAGACATGTTTAAAACTCTGTTTGCTTTTTGCACTACGTTCAAGAGGATAGGCATCAGAAATACTGTTCTCGGCTGGCCTTTga
gi|20 : tAAACCCTCAAAATCATCTTCTTTGTTGTCGCTGTCA
gi|21 : cccggatgtcggactcatcaaaccttcgtcAAATTTTATTTTAATTTCAAATGCTTTATATATTTTGTTTACGGTGAGTAT
gi|22 : AAATTTTATTTTAATTTCAAATGCTTTATATATTTTGTTTACGGTGAGTATgcaa
gi|23 : CAATGATAACACATTCTCAATCCC-TTCTCgca
gi|3 : ttcttcacaatttatcctcaTCAAAACCCTCAAAGTCATCTC--------------------------AACACATTCTCAACCCCCTTCTCACCCACCAGGTTCTCAA---CACCTACTC-AAATGTGTCACTATTATATT---GCCACT---TGTCAAACGGTATTCAC--TCTTT--------AATTCAAGATCAAAGTCATGTCAGTTAGTTTCACTT-AACAGAGTGATAATCCAACTGCAGTAAGTGATGAGGAAAGTACAAG----TGGG-CGGA-GTCA-------A---------------GTTGGC------------GTCGCCG---------AACACC------TGCGCA----------ATTTTTTTGT----CCCAA-AT-TTTTAAATTTGTTT-TTTGTCAT-CTTTAATCGATAAAC---TG--------------ACAATT---------------AT-------------T----ATTGT--AAAA---AA--T-----A-----G-------TAATATTAAT----ATTTTCAT---A-T---A-TA-TT------TCT--TT------ATTACATTAAACCCCATACAATTATCCCGTTCAATGGCAGGCGT-AAAAATTGTGGATTGAACAGAATTTAA---AT---ATTTGCACCAGTCTAGTTAATAAATAGAAGATTTCCTGTGTAACGATAGGTTTTGTTGTTTTCCAATTTAGAAGTTACAGAATACACATAAAATACAAAAAAGGGTTTATAAACTGTGTTTATTAAAAAGAAATCGTAAAATATAAAGCATTTAAGACATGTTTAAAACTTCCTGTGCTTTTTGCCCTACGTTCAATATGATAGTCGTCAGAAATATTGTTGTCGACTGGACTTT
gi|4 : tgctactataaaatggtgttaccgttataacttttatgtgtaagtgtatttgggtaagataaagggaaaataaaaacaaacttttaacatttttttaagtgcatctttctagaaatatctgggtcctaaaaaggaccatcaccgtctcactgtatctgcatcattcagcagtctctgatgtccgacttgAAAGTTAATTA----AGTCAACAATGATAAACTGGTATGGAAATTGTATTTTAATTTCAAATGCTATGTATATTTTGTTTATGGT-AGTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACT-ATCAAAACCCTTAAAATCATCTCCTTC-----------CAAGCAACGATAACACGTTCTAAACCCC-TGCTCACCAACAAGGTTCTGAA---CACCTACAT-ACATGTGTCACTATT--------GACACT---TGTCAAACGGTATTCATGCTTTTT--------AATTCAAGATCAAAG-------------TTTCAATT-AATAGAGTGATAATCCGACAGCAGTAAAAGACAAGGAAAGTACAAG----TGGG-CGGA-GTCA-------A---------------ATTAGC------------GTCGCCA---------AACACC------TGCACA----------ATTTTGTTCT----CCCAA-AG-TTTTAAATT---------GTTATATTTTAATCAATAAAC---CGAT-A----------ACAATC---------------AT-------------TCATTATCGT-AAAAG---AA--A-----A-----G-------CAAA----AC----ATAATTGTA-AA-A---A-AATAT----AATAT--AT------ATTACATTAAACACAATACAATTATCCCATTAAACGGCGAGCTTAAAAAATAGCGAATTTAACAGAATTTGA---AT---ATTTGCACCAGTCTAGTGAATAAATAGAAGACTTCCGGTTTAGCGAAAAGTTTTGTTGTTTTCCTATTTGGAAGTTACAGAATACACA-ATAATACCAAAAAGGGTTTATAAACTTTGTTTATT-AATTGAACTTATAAAATATTAAGCATGTAAGACTTGTTTAAAACTTTGTGTGCTTTTTGCACTACGTTCAAGATGATAGGCATCAGAAATACTGTTCTCGGCTGGCCTTT
gi|5 : -ATCAAAACCTTCAAAATCATCTCCTTCATTATCGCTGCCGAGCAAAGATAACACGTTCTAAACCCC-TTCTCACCAATGAGGTTCTGAA---CACCTACAT-ACACGTGTCACTATT--------GACACT---TGTCAAATGGTATTCACGCTTTTT--------AATTTAAGATCAAAGAGATGTCAATTAGTTTCAATT-AACAGAGTGATAATCCGACAGCAGTAAATGAAAACTAAAGTACAAG----TGGG-CAGA-GTAA-------A---------------ATTAGC------------ATCGCTG---------AACACG------TGCACA----------ATTTTGTTCT----CCCAA-AA-TTTTTAATTTTTTA-TGTGTTAT-----AATCAATAAAC---CGAT-A----------ATGATT---------------AT-------------TCATAATTGTAAAAGG---AA--------------G-------CAAA----AC----ATAGTTGTA-AA-A---AATA-GT----AATAT--AT------ATTACATTAAACACCATACAATTATCCCATTACATGGCAAGCATAAAAAATAGCGAATTTAACAGAATTTGA---AT---ATTTGCACCAGTCTTGTGAATAAATAGAAGACTTCCAGTTTAGCAAAAAGTTTTGTTGTTTTCCTGTTTGGAAGTTACAGAATACACA-ATAATACCAAAAAGGGTTCATAAACTTTGTTTATTAAATAGAAATCATAAAATATAAAGCATGTAAGACATGTTTAAAACTTTGTGTGCTTTTTGCACTACATTCAGGATGATAGGCATCAGAAATACTGCTGTCTACTGGCTT
gi|6 : tTTATC---CCCA--CAACGATAACACGTTATCAACCCC-TTCTCACCCACCAGGTTCTCAA---CACCTTCTC-AGACATGTCACTATT--------GCCACA---TGTCAAACGATATTCATACTCGTT--------AATTCAAGATCAAAGAGATGTCAATTAGTTTCAATT-AACAGAGTGATAATCTGACGGCAGGAAAGGACGTGGAAAGTACAAG----TGGG-CAGA-GTCA-------A---------------ATTGGC------------GCCGCCG---------ATCACC------TGCACA----------ATTCTCTTGT----CCCAA-AT-TTTTAAATTCGTTT-TGTAATAT-TCTTAATCAATAAAC---TGAT-A----------ATAATT---------------AT-------------TCATTAGTGTTAAAAACTGAA--ATTCATA-----G-------TAATATCAAT----ATTTTCAT---T-T---A-TA-TT------TCT--TT------ATTACATTAAACCCCATACAATTATCCCGT---------------AAAAATAGTGAATTGAACAGGTGTTGAATTAT---ATTTGTACCAGTCTAGTTAATAAATTGATGACTTCCGGTTTAGCGAAAAGTTTTGTTGTTTTCCCATTTGGAAGTTACAGAATACACA-ATAATACATCAAAGGGTTTGTAAACTACGTTTATTTAATACAAATAATAAAATATAAAGCATGTTAGACATGTTTAAGACTTCATGTGCTTTTTGCACAACGTTCAGGATGATAGGCATCAGAAATACTGTTCTCGACTGGCCTTT
gi|7 : tctttactat-AAACATGTCACTTTT--------GTCACT---TATCAAATGGTATTTG---------------------AAGATCAAAGAGATGTCAATTAGTTTCAATC-AACAGAGTGATAATCTGACAGCAGGGAAGGACGAG---------------TGGG-CGGA-GTCA-------ATTTTGTA--------ATTGGCTTGTAATTTACTGCCACTG---------GACACC------TGCACA----------ATTTTGTTAT----CCCAG-AT-TTTTAAATTTGTTT-TGTGTTAT-TTTTAATCAATAAACTTTCTATTC----------ATAATTGTAAAATAAATGGAAAT-------------TCATAATTGTAAAAAA---TATTA-----A-----GTGTACATCAAT----A------TTTTCATA-TA-------TA-TT------TCT--TT------ATTACGTTAAACACCACACAATTAACCCATTAAATGACGAGCATAAAA-ATAGTGAATTAAACAGAGTATGA---AT---ATTTGCACCAGTCTAGTTAATAAATAGAAGACTTCCGGTTTAAGGAAGAGTTTTGTTGTTTTCACATTTGGAAGTAACAGAATACACA-ATAATACCAAAAGTGGTTTATAAACTGTGTTTATTAAATTGAAATCATAAAATATAAAAAATGCAAGACATGTTTAAAACTTCCTGTTCTTATTGCACTACGTTCAAGATGATGGTCGTCAGAAATGCTGTTGTTGATTTGCCTTT
gi|8 : C-ATCAAAACCCTCAAAGCCATCTCCTTTGATGTCGCTTTCAAGCAAC---AAAACGTTCTCA--------CCCACCAGCTAGGTTCTCAA---CACCTACTC-AAACGTGTCACTATT--------GCCACT---TGTCAAACGGTATTCATACTCTCT--------AATTCAAGATCAATGAGATGTCAATTAGTTTCAATT-AACAGAGTGATAATCCGACAGCAGTAAAGGACAAGGAAAGTATAAG----TGGG-CGGT-GTCA-------A---------------ATTGGC------------ACCACTG---------AACACC------TGCACA----------ATTTTGTTGT----CCCAA-TT-TTTTAAATTCGTTT-TGCGTTAT-TTTTAATCGATAAAC---TGAT-A----------ATAATT---------------AT-------------TCATATTTGT-AAAAA---CA--A-----T-----G-------AAAT----TC----ATAATTTTAGAA-A---A-TA-GT----AATATCAGT------ATT
gi|9 : aagtttaaaatggtgttaccataataatttttatgtgtatttgagtaagatataagggacaataaaaactattgaccattttttaagtacatctatcaagaaatatttggaacctaaaaaatgaccatctccctctcactgtatctccatcattcagctgtctctgatgtctgactCTT-AAACATGTTAGTATT--------GTCAAG---TATGGAAGGGAATTTGCGCTCTTT--------AATTGAAGATC-AAGAGA--TCAATTAGTTTCAATT-AGTGCACTTATAATCTCACAGCAGGAAAGGACAAGGGAG----AGG----TGGG-ttcatatatatatttctttattacattgaacacta
gi|9 : GAGGGGGGTGTAGGGGGATGGGTCGGA-GTCAGTTTTGTA---------------ATTGGCATGCAATTAACAGCCGCCA---------AACATTGACAAATGCACATA--------ACTTTCTTTTTTGTCATAG-AG-TTTTAAATTTGTTTATGTAA-AT-TTTCAATCCATAAAC---TGTT-G----------TT--TT---------------TT-------------TCATAGCTATAAAAAA---AA-------------------------------------TCTT-----------------AC----AATAT-----------TTACAT--------ATATA--TAT-----TTAATGACAACCATAAAA-ATAGTGAATTGATCAGGATTTAA---AT---ATTTGTACCAGTCTAGTTAgtgggttagtgttagtggtggaggggggtgtagggggatgggtcggagtcagttttgtaattggcatgcaattaacagccgccaaacattgacaaatgcacataactttcttttttgtcatagagttttaaatttgtttatgtaaattttcaatccataaactgttgtttttttcatagctataaaaaaaatcttacaatatttacatatatatatttaatgacaaccataaaaatagtgaattgatcaggatttaaatatttgtaccagtctagttatacacattatattatagacttgcagtgta
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTTGCGAATATATAAAGTGTTAAATGATTTATTTATTAAATGTGTGTTTGAATTTGGATACGGCTAAAGGGAAAATAAAAACAAACTATTGACAATTTTTTTAACACATCTTTCGAGATGTTTCTTCGGTCCTTAAAAGTCCCCTCACTCCTCTCTCCTTCAGCAATCTCGGGTGTCAGGCTTATCAAATCCTTCAAAATTATCTTCTT
Unaligned ( gi|16 ): TTTGCAAGTATAAAATGGTGGTACCATTTATTTACGTGTATTTGGGTAAGACAAAAGGGAAAATAAAAACAAACAATTGACAATTGTTTAAGTACATCTTTCGAGCAGTATTTGGGTCCTAAAAAGTACCACCACCCTCTTACTGTCCAATC
Unaligned ( gi|18 ): TTTGCAAATATATAATGGTGTTAATTATTGTATTTATTAATATGTGTGTGTAAACGGGTAAGACAAAAGGGAAAATAAAAACAAACTATTAACG
Unaligned ( gi|19 ): TAAGTGTATCTTTCGAGAAATATTTGGGTCCTAAAAGGACCCTCACTCCTCACTGTATCTACATCCTTTGGCAATCT
Alignments
lowQualScore : 2222 2 7777777777777777777777777777777777777777777777777777777777777777777777777 22222222 11111111 99999999999999999999999999999999999999999999999999999999999 111111111 111111 2222222222 1111111111 333333333333333333333333333333 888888888888888888888888888888888888888888888888888888888888888888 1111111111 1
lowQualScore : 8888 0 1 0 1111111111111111111111111111111111111111111111111111111111111111111111111 0 44 2 0 22 1 1 5 3 1 777 3 0 0 00000000 1 666 44 22222222 3 2 33 0 1 0 6666 3 3 33333333333333333333333333333333333333333333333333333333333 444444444 000000 0000000000 1 1 7777 3 88 4 3 4 777 4 7777777777 2 333333333333333333333333333333 6 8888 111111111111111111111111111111111111111111111111111111111111111111 0 5555555555 1 1 99999 0 3 0 0 0 0 777 777 2 5 1 5 1 1
lowQualScore : .... . . . ......................................................................... . .. . . .. . . . . . ... . . . ........ . ... .. ........ . . .. . . . .... . . ........................................................... ......... ...... .......... . . .... . .. . . . ... . .......... . .............................. . .... .................................................................. . .......... . . ..... . . . . . . ... ... . . . . . .
lowQualScore : 3333 7 4 0 1111111111111111111111111111111111111111111111111111111111111111111111111 2 99 1 7 44 4 0 0 0 0 888 3 2 1 44444444 0 444 55 11111111 1 5 88 1 0 4 5555 1 3 11111111111111111111111111111111111111111111111111111111111 555555555 555555 9999999999 4 0 7777 6 22 7 6 4 000 0 5555555555 3 111111111111111111111111111111 0 2222 000000000000000000000000000000000000000000000000000000000000000000 6 3333333333 7 7 00000 9 7 9 2 7 1 888 888 2 0 4 9 9 0
consensus : NAAAGTTAATTA----AGTCAACAATGATAAACCGGTATGGAAATTTTATTTTAATTTCAAATGCTATATATATTTTGTTTACGGTGAGTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNANC-ATCAAAACCCTCAAAATCATCTCCTTCGTTATCGCTGCCAAGCAACGATAACACGTTCTNAACCCC-TTCTCACCAACGAGGTTCTNAA---CACCTACTT-AAACGTGTCACTATT--------GNCACT---TGTCAAACGGTATTCGCGCTCTTT--------AATTCAAGATCAAAGAGATGTCAATTAGTTTCAATT-AACAGAGTGATAATCCGACAGCAGTAAAGGACGAGGAAAGTACAAG----TGGG-CGGA-GTCA-------A---------------ATTGGC---------GC--------G----------CCGCCG---------AACACC------TGCACA----------ATTTTGTTNT----CCCAA-AN-TTTTAAATTCGTTT-TGTGTTAT-TTTTAATCAATAAAC---CGAT-A----------ATAATT---------------AT-------------TCATAATTGTAAAAAA---AA--A-----A-----G-------CAAT----AC----ATNTTCGTA-AA-A---A-TA-NT----AATAT--NT------ATTACATTAAACACCATACAATTATCCCGTTAAACGGCGAGCATAAAAAATAGCGAATTGAACAGAATTTGA---AT---ATTTGCACCAGTCTAGTTAATAAATAGAAGACTTCCGGTTTAGCGAAAAGTTTTGTTGTTTTCCCATTTGGAAGTTACAGAATACACA-ATAATACCAAAAAGGGTTTATAAACTGTGTTTATTNAATAGAAATCATAAAATATAAAGCATGTAAGACATGTTTAAAACTTCGTGTGCTTTTTGCACTACGTTCAAGATGATAGGCGTCAGAAATACTGTTNTCGACTGGCCTTT
Reference ( family-2020 ) : NAAAGTTAATTA----AGTCAACAATGATAAACCGGTATGGAAATTTTATTTTAATTTCAAATGCTATATATATTTTGTTTACGGTGAGTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNANC-ATCAAAACCCTCAAAATCATCTCCTTCGTTATCGCTGCCAAGCAACGATAACACGTTCTNAACCCC-TTCTCACCAACGAGGTTCTNAA---CACCTACTT-AAACGTGTCACTATT--------GNCACT---TGTCAAACGGTATTCGCGCTCTTT--------AATTCAAGATCAAAGAGATGTCAATTAGTTTCAATT-AACAGAGTGATAATCCGACAGCAGTAAAGGACGAGGAAAGTACAAG----TGGG-CGGA-GTCA-------A---------------ATTGGC---------GC--------G----------CCGCCG---------AACACC------TGCACA----------ATTTTGTTNT----CCCAA-AN-TTTTAAATTCGTTT-TGTGTTAT-TTTTAATCAATAAAC---CGAT-A----------ATAATT---------------AT-------------TCATAATTGTAAAAAA---AA--A-----A-----G-------CAAT----AC----ATNTTCGTA-AA-A---A-TA-NT----AATAT--NT------ATTACATTAAACACCATACAATTATCCCGTTAAACGGCGAGCATAAAAAATAGCGAATTGAACAGAATTTGA---AT---ATTTGCACCAGTCTAGTTAATAAATAGAAGACTTCCGGTTTAGCGAAAAGTTTTGTTGTTTTCCCATTTGGAAGTTACAGAATACACA-ATAATACCAAAAAGGGTTTATAAACTGTGTTTATTNAATAGAAATCATAAAATATAAAGCATGTAAGACATGTTTAAAACTTCGTGTGCTTTTTGCACTACGTTCAAGATGATAGGCGTCAGAAATACTGTTNTCGACTGGCCTTT
gi|1 : -ATCAAACCCCTCAAAATCATCTTCTTCG
gi|1 : atttgtgagtattaaaaggtgttaattgttttatttattataaattatgtgtgtctgtgtatttgggtaagacaaaaaggacaataaaaacaaactattgacaattctttattaagtacagcttttgagaaatatttgggtccttaaatggaccctcactcctcacattatctacattcttcagcagtcttggatgtccgactaCTCAAAATCATCTTCTTCGAACATGTCGTTATT--------GTCACT---TATCAATTGGTATTCGCAGTCTTT--------AAATGGATATGAAAGAGATGTCAATTTGTTTCAAT--------------AT--GACAGCAGGAAAGGACGAGGAAA---CAAG----TAGG-CGGA-GTCA-------ATTTTGTAATTGCGTAATTGACTT-------GC--------AATCTACTA--CCGCCG---------AACACC------TGCACA----------ATTTTTTTTG----TCCAA-GGGTTTTAAATTCGTTT-TGTGTTAT-TTTTAATCAATAAAA---TGCT-ACAAGTTATTCATAATT---------------GTAAAAATGGTAACTTTATACTTGTAAAAAA---TATTA-----ATTATGA-------CAAT----ATGAATATTTCCATA-TATAT--A-TA-TT------TCT--TT------ATTACATTAAGCACCGTACAATTATCCCAATTAATGATCAGCATAAAAA-TAGTGAGTTGAACAGTATTTGA---AT---ATGTGCACCAGTCTAGTTAATAAATAGAAGACTTACCGTTTAACGAAAGGGTTTGTTTTTGTCTCATTTGGAAGTAATAGAATTCACA-TTAATACCAAAAATGGTTAATAAACTGTGTTTATTAAATAGAAATCATAAAATATAAAGAATGTAAGACA----------TTCCTGTGCTTTTTGCACTAGGTTCAAGATGGTAGTCGTCTGAAATACTGTTGTTGGTCGGCCTaacatgtcgttattgtcacttatcaattggtattcgcagtctttaaatggatatgaaagagatgtcaatttgtttcaatatgacagcaggaaaggacgaggaaacaagtaggcggagtcaattttgtaattgcgtaattgacttgcaatctactaccgccgaacacctgcacaattttttttgtccaagggttttaaattcgttttgtgttatttttaatcaataaaatgctacaagttattcataattgtaaaaatggtaactttatacttgtaaaaaatattaattatgacaatatgaatatttccatatatatatatttctttattacattaagcaccgtacaattatcccaattaatgatcagcataaaaatagtgagttgaacagtatttgaatatgtgcaccagtctagttaataaatagaagacttaccgtttaacgaaagggtttgtttttgtctcatttggaagtaatagaattcacattaataccaaaaatggttaataaactgtgtttattaaatagaaatcataaaatataaagaatgtaagacattcctgtgctttttgcactaggttcaagatggtagtcgtctgaaatactgttgttggtcggcct
gi|10 : atttgtgagtattaaaaggtgttaattgttttatttattataaattatgtgtgtctgtgtatttgggtaagacaaaaaggacaataaaaacaaactattgacaattctttattaagtacagcttttgagaaatatttgggtccttaaatggaccctcactcctcacattatctacattcttcagcagtcttggatgtccgactaatcaaacccCAATAAAC---TGAT-A----------ATAATT---------------AT-------------TCATAAGTGTTAAAGA---AA--T-----------G-------AAAT----TC----ATA---GTA-AA-ATCAA-TA-TTTTCAAATAT--ATTTCTTTATTACATTAAACCCCATACAATTATCCCGT---------------AAAAATAGTGAATTGAACAGATGTTGA---ATTATATTTGTACCAGTCTAGTTAATAAATTGATGACTTCCAGTTTAGAGAAAAGTTTTGTTGTTTTCCCATTTGGAAATCACAGAAAACACA-ATAATACATCAAAGAGTTTGTAAAGTGCGTTTATTTAACAGAAATAATAAAATATAAAGCATTTTAGACATGTTTAAAACTTTGTGTGCTTTTTGCACTACGTTCAGGATGATAGGCATCAGAAATACTGTTCTCAACTGGCCTT
gi|11 : AAAGTTAATTA----AGTTAACAGTGATAAACTGGTATGGAAGTTTTGTTTTAATTTCAAATGCTATATATATTTTGTTTCTGGT-AGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTACCAAAACCCTCAAAATCATCT---TCGTTATTGCTGCCAAGCAACAATAACACGTTCTAAACCCC-TTGTCACCAACGAGGTTCTGAA---CACCTACAT-ACACGTGTCACTATT--------
gi|12 : AA---CACCTACTT-TAACTTGTCACTGGT--------GTCAAG---TATCAAATGGTATTCATACTCTTT--------AATTGAAGATTAAAGAGATTTGTATTACTT----TT-AGCA---TGATAATTTGAGAGCATGATAGGATAGGGAAAGGACAAG----GGGG-C--ATGTCAATTTTGTA---------------ATTGGC---------AT--------GAAATTTACTACTGCTGAACAATAATAACACC------TATATATACCTTTTGTGTTTTGTTTT----TCCAACAT-TTTTACATCTGTTT-
gi|14 : CTATTT-AAACATGTCACTATTTGGATAACGTTATTAAGCATCAAACAGTATTCGCACACTCTCACAGTCAAACTGAACATCAAAGCAATGT--ATTAGTGTCGATGAAACAATGTGATATACTGACAG-AATTAAGGATGAGAAAGGAACAAG----GGAG-TGGA-GCCA-------A---------------TTT
gi|15 : aaTCGTT--------AATTCAAGATCAAAGAGATGT----TAGTTTCAATA-AACAGAGTGACAATCTGACAGCAGTAAAGGAGGCGGAAAGTACAAG----TGGG-TGGA-GTCA-------A---------------ATTG-----------GT--------G----------CCGCCG---------AACACC------TGCAAA----------ATTTTCTTGA----CCCAA-A--TTTTAAATTTGTTT-Ttttgattgccatgta
gi|17 : AATAGAAATCGTAAAATATTAAGGACATAAGACATGTTTTAAACTTCATGAGCAGATTGCACtta
gi|2 : tacaaaatagtacagatcctcaaaatttgtagggaaatcttcaggtcagttttatatacggAAAGTTAATTATTAAAGTCAACAATGATAAACCGGTATGGAAATTTTATTTTAATTTCAAATGCTATATATATTTTGTTTATGGT-AGTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-ATCAAAACCCTAAAAAGCATCTCCTTCATTATCGATGCCAAGCAGCGATAACACGTTCTAAACCCC-TTCTTACCAACGAGGTTCTGAA---CACCTACCT-ACACATGTCACTATT--------GACACT---TGTCAAACGGTATTCGCGCTTTTT--------AATTTAAGATCAAAGAGATGTCAATTAGTTTAAATT-AACAGAGAGATAATCCGACAGCAGTAAAGGATAAGGAAAGTACAAG----GGGG-CGGA-GTCA-------A---------------ATTAGC---------AT--------------------CGCCG---------AACACC------TGCACA----------ATTTTGTTCT----CCCAA-AG-TTTTAAATTTGTTT-TGTGTTAT-TTTTAATCAATAAAC---CAAT-A----------ATAATT---------------AT-------------TCATAATTGTAAAAAA---AA--A-----A-----G-------CAAT----AC----ATTTTTGTA-AA-A---A-TA-GT----AATAT--AT------ATTACATTAAACACCATACAATTATCGCATTAAACGGCGAGCATAAAAAATAGCAAATTTTTCAGAATTTGA---AT---ATTTGCACCAGTCTAGTGAATAAATAGAAGACTTTCAGTTCAACGAAAAGTTTTGTTGTTTTCCCGTTTGGAAGTTACAGAATACACA-ATAATACCAAAAAGGGTTAATAAACTTTGTTTATTTAATAGAAATCATAAAATATAAAGCATGTAAGACATGTTTAAAACTCTGTTTGCTTTTTGCACTACGTTCAAGAGGATAGGCATCAGAAATACTGTTCTCGGCTGGCCTTTga
gi|20 : tAAACCCTCAAAATCATCTTCTTTGTTGTCGCTGTCA
gi|21 : cccggatgtcggactcatcaaaccttcgtcAAATTTTATTTTAATTTCAAATGCTTTATATATTTTGTTTACGGTGAGTAT
gi|22 : AAATTTTATTTTAATTTCAAATGCTTTATATATTTTGTTTACGGTGAGTATgcaa
gi|23 : CAATGATAACACATTCTCAATCCC-TTCTCgca
gi|3 : ttcttcacaatttatcctcaTCAAAACCCTCAAAGTCATCTC--------------------------AACACATTCTCAACCCCCTTCTCACCCACCAGGTTCTCAA---CACCTACTC-AAATGTGTCACTATTATATT---GCCACT---TGTCAAACGGTATTCAC--TCTTT--------AATTCAAGATCAAAGTCATGTCAGTTAGTTTCACTT-AACAGAGTGATAATCCAACTGCAGTAAGTGATGAGGAAAGTACAAG----TGGG-CGGA-GTCA-------A---------------GTTGGC---------GT--------------------CGCCG---------AACACC------TGCGCA----------ATTTTTTTGT----CCCAA-AT-TTTTAAATTTGTTT-TTTGTCAT-CTTTAATCGATAAAC---TGAC-A----------AT---T---------------AT-------------T----ATTGTAAAAAA---TA--------------G-------TAAT----ATTAATATTTTCATA-TA-------TA-TT------TCT--TT------ATTACATTAAACCCCATACAATTATCCCGTTCAATGGCAGGCGTAAAAATT-GTGGATTGAACAGAATTTAA---AT---ATTTGCACCAGTCTAGTTAATAAATAGAAGATTTCCTGTGTAACGATAGGTTTTGTTGTTTTCCAATTTAGAAGTTACAGAATACACATAAAATACAAAAAAGGGTTTATAAACTGTGTTTATTAAAAAGAAATCGTAAAATATAAAGCATTTAAGACATGTTTAAAACTTCCTGTGCTTTTTGCCCTACGTTCAATATGATAGTCGTCAGAAATATTGTTGTCGACTGGACTTT
gi|4 : tgctactataaaatggtgttaccgttataacttttatgtgtaagtgtatttgggtaagataaagggaaaataaaaacaaacttttaacatttttttaagtgcatctttctagaaatatctgggtcctaaaaaggaccatcaccgtctcactgtatctgcatcattcagcagtctctgatgtccgacttgAAAGTTAATTA----AGTCAACAATGATAAACTGGTATGGAAATTGTATTTTAATTTCAAATGCTATGTATATTTTGTTTATGGT-AGTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACT-ATCAAAACCCTTAAAATCATCTCCTTC-----------CAAGCAACGATAACACGTTCTAAACCCC-TGCTCACCAACAAGGTTCTGAA---CACCTACAT-ACATGTGTCACTATT--------GACACT---TGTCAAACGGTATTCATGCTTTTT--------AATTCAAGATCAAAG-------------TTTCAATT-AATAGAGTGATAATCCGACAGCAGTAAAAGACAAGGAAAGTACAAG----TGGG-CGGA-GTCA-------A---------------ATTAGC---------GT--------------------CGCCA---------AACACC------TGCACA----------ATTTTGTTCT----CCCAA-AG-TTTTAAATT---------GTTATATTTTAATCAATAAAC---CGAT-A----------ACAATC---------------AT-------------TCATTATCGT-AAAAG---AA--A-----A-----G-------CAAA----AC----ATAATTGTA-AA-A---A-AATAT----AATAT--AT------ATTACATTAAACACAATACAATTATCCCATTAAACGGCGAGCTTAAAAAATAGCGAATTTAACAGAATTTGA---AT---ATTTGCACCAGTCTAGTGAATAAATAGAAGACTTCCGGTTTAGCGAAAAGTTTTGTTGTTTTCCTATTTGGAAGTTACAGAATACACA-ATAATACCAAAAAGGGTTTATAAACTTTGTTTATT-AATTGAACTTATAAAATATTAAGCATGTAAGACTTGTTTAAAACTTTGTGTGCTTTTTGCACTACGTTCAAGATGATAGGCATCAGAAATACTGTTCTCGGCTGGCCTTT
gi|5 : -ATCAAAACCTTCAAAATCATCTCCTTCATTATCGCTGCCGAGCAAAGATAACACGTTCTAAACCCC-TTCTCACCAATGAGGTTCTGAA---CACCTACAT-ACACGTGTCACTATT--------GACACT---TGTCAAATGGTATTCACGCTTTTT--------AATTTAAGATCAAAGAGATGTCAATTAGTTTCAATT-AACAGAGTGATAATCCGACAGCAGTAAATGAAAACTAAAGTACAAG----TGGG-CAGA-GTAA-------A---------------ATTAGC---------AT--------------------CGCTG---------AACACG------TGCACA----------ATTTTGTTCT----CCCAA-AA-TTTTTAATTTTTTA-TGTGTTAT-----AATCAATAAAC---CGAT-A----------ATGATT---------------AT-------------TCATAATTGTAAAAGG---AA--------------G-------CAAA----AC----ATAGTTGTA-AA-A---AATA-GT----AATAT--AT------ATTACATTAAACACCATACAATTATCCCATTACATGGCAAGCATAAAAAATAGCGAATTTAACAGAATTTGA---AT---ATTTGCACCAGTCTTGTGAATAAATAGAAGACTTCCAGTTTAGCAAAAAGTTTTGTTGTTTTCCTGTTTGGAAGTTACAGAATACACA-ATAATACCAAAAAGGGTTCATAAACTTTGTTTATTAAATAGAAATCATAAAATATAAAGCATGTAAGACATGTTTAAAACTTTGTGTGCTTTTTGCACTACATTCAGGATGATAGGCATCAGAAATACTGCTGTCTACTGGCTT
gi|6 : tCAACGATAACACGTTATCAACCCC-TTCTCACCCACCAGGTTCTCAA---CACCTTCTC-AGACATGTCACTATT--------GCCACA---TGTCAAACGATATTCATACTCGTT--------AATTCAAGATCAAAGAGATGTCAATTAGTTTCAATT-AACAGAGTGATAATCTGACGGCAGGAAAGGACGTGGAAAGTACAAG----TGGG-CAGA-GTCA-------A---------------ATTG-----------GC--------G----------CCGCCG---------ATCACC------TGCACA----------ATTCTCTTGT----CCCAA-AT-TTTTAAATTCGTTT-TGTAATAT-TCTTAATCAATAAAC---TGAT-A----------ATAATT---------------AT-------------TCATTAGTGTTAAAAACTGAA--ATTCATA-----G-------TAATATCAAT----ATTTTCAT---T-T---A-TA-TT------TCT--TT------ATTACATTAAACCCCATACAATTATCCCGT---------------AAAAATAGTGAATTGAACAGGTGTTGAATTAT---ATTTGTACCAGTCTAGTTAATAAATTGATGACTTCCGGTTTAGCGAAAAGTTTTGTTGTTTTCCCATTTGGAAGTTACAGAATACACA-ATAATACATCAAAGGGTTTGTAAACTACGTTTATTTAATACAAATAATAAAATATAAAGCATGTTAGACATGTTTAAGACTTCATGTGCTTTTTGCACAACGTTCAGGATGATAGGCATCAGAAATACTGTTCTCGACTGGCCTTT
gi|7 : tctttactatttatcccca-AAACATGTCACTTTT--------GTCACT---TATCAAATGGTATTTG---------------------AAGATCAAAGAGATGTCAATTAGTTTCAATC-AACAGAGTGATAATCTGACAGCAGGGAAGGACGAG---------------TGGG-CGGA-GTCA-------ATTTTGTA--------ATTGGCTTGTAATTTACT-------G----------CCACTG---------GACACC------TGCACA----------ATTTTGTTAT----CCCAG-AT-TTTTAAATTTGTTT-TGTGTTAT-TTTTAATCAATAAACTTTCTATTC----------ATAATTGTAAAATAAATGGAAAT-------------TCATAATTGTAAAAAA---TATTA-----A-----GTGTACATCAAT----A------TTTTCATA-TA-------TA-TT------TCT--TT------ATTACGTTAAACACCACACAATTAACCCATTAAATGACGAGCATAAAAA-TAGTGAATTAAACAGAGTATGA---AT---ATTTGCACCAGTCTAGTTAATAAATAGAAGACTTCCGGTTTAAGGAAGAGTTTTGTTGTTTTCACATTTGGAAGTAACAGAATACACA-ATAATACCAAAAGTGGTTTATAAACTGTGTTTATTAAATTGAAATCATAAAATATAAAAAATGCAAGACATGTTTAAAACTTCCTGTTCTTATTGCACTACGTTCAAGATGATGGTCGTCAGAAATGCTGTTGTTGATTTGCCTTT
gi|8 : C-ATCAAAACCCTCAAAGCCATCTCCTTTGATGTCGCTTTCAAGCAAC---AAAACGTTCTCA--------CCCACCAGCTAGGTTCTCAA---CACCTACTC-AAACGTGTCACTATT--------GCCACT---TGTCAAACGGTATTCATACTCTCT--------AATTCAAGATCAATGAGATGTCAATTAGTTTCAATT-AACAGAGTGATAATCCGACAGCAGTAAAGGACAAGGAAAGTATAAG----TGGG-CGGT-GTCA-------A---------------ATTG-----------GC--------A----------CCACTG---------AACACC------TGCACA----------ATTTTGTTGT----CCCAA-TT-TTTTAAATTCGTTT-TGCGTTAT-TTTTAATCGATAAAC---TGAT-A----------ATAATT---------------AT-------------TCATATTTGT-AAAAA---CA--A-----T-----G-------AAAT----TC----ATAATTTTAGAA-A---A-TA-GT----AATATCAGT------ATT
gi|9 : aagtttaaaatggtgttaccataataatttttatgtgtatttgagtaagatataagggacaataaaaactattgaccattttttaagtacatctatcaagaaatatttggaacctaaaaaatgaccatctccctctcactgtatctccatcattcagctgtctctgatgtctgactCTT-AAACATGTTAGTATT--------GTCAAG---TATGGAAGGGAATTTGCGCTCTTT--------AATTGAAGATCAA-GAGAT--CAATTAGTTTCAATT-AGTGCACTTATAATCTCACAGCAGGAAAGGACAAGGGAG----AGG----TGGG-ttcatatatatatttctttattacattgaacacta
gi|9 : GAGGGGGGTGTAGGGGGATGGGTCGGA-GTCAGTTTTGTA---------------ATTGGCAT-------GCAATTAACAG----------CCGCCA---------AACATTGACAAATGCACATA--------ACTTTCTTTTTTGTCATAG-AG-TTTTAAATTTGTTTATGTAA-AT-TTTCAATCCATAAAC---TGTT-G----------TT--TT---------------TT-------------TCATAGCTATAAAAAA---AA-------------------------------------TCTT-----------------AC----AATAT-----------TTACAT--------ATATA--TAT----TTAA-TGACAACCATAAAAA-TAGTGAATTGATCAGGATTTAA---AT---ATTTGTACCAGTCTAGTTAgtgggttagtgttagtggtggaggggggtgtagggggatgggtcggagtcagttttgtaattggcatgcaattaacagccgccaaacattgacaaatgcacataactttcttttttgtcatagagttttaaatttgtttatgtaaattttcaatccataaactgttgtttttttcatagctataaaaaaaatcttacaatatttacatatatatatttaatgacaaccataaaaatagtgaattgatcaggatttaaatatttgtaccagtctagttatacacattatattatagacttgcagtgta
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTTGCGAATATATAAAGTGTTAAATGATTTATTTATTAAATGTGTGTTTGAATTTGGATACGGCTAAAGGGAAAATAAAAACAAACTATTGACAATTTTTTTAACACATCTTTCGAGATGTTTCTTCGGTCCTTAAAAGTCCCCTCACTCCTCTCTCCTTCAGCAATCTCGGGTGTCAGGCTTATCAAATCCTTCAAAATTATCTTCTT
Unaligned ( gi|16 ): TTTGCAAGTATAAAATGGTGGTACCATTTATTTACGTGTATTTGGGTAAGACAAAAGGGAAAATAAAAACAAACAATTGACAATTGTTTAAGTACATCTTTCGAGCAGTATTTGGGTCCTAAAAAGTACCACCACCCTCTTACTGTCCAATC
Unaligned ( gi|18 ): TTTGCAAATATATAATGGTGTTAATTATTGTATTTATTAATATGTGTGTGTAAACGGGTAAGACAAAAGGGAAAATAAAAACAAACTATTAACG
Unaligned ( gi|19 ): TAAGTGTATCTTTCGAGAAATATTTGGGTCCTAAAAGGACCCTCACTCCTCACTGTATCTACATCCTTTGGCAATCT
Alignments
lowQualScore : 2222 2 7777777777777777777777777777777777777777777777777777777777777777777777777 22222222 11111111 99999999999999999999999999999999999999999999999999999999999 111111111 111111 2222222222 1111111111 333333333333333333333333333333 888888888888888888888888888888888888888888888888888888888888888888 1111111111 1
lowQualScore : 8888 0 1 0 1111111111111111111111111111111111111111111111111111111111111111111111111 0 44 2 0 22 1 1 5 3 1 777 3 0 0 00000000 1 666 44 22222222 3 2 33 0 1 0 6666 3 3 33333333333333333333333333333333333333333333333333333333333 444444444 000000 0000000000 1 1 7777 3 88 4 3 4 777 4 7777777777 2 333333333333333333333333333333 6 8888 111111111111111111111111111111111111111111111111111111111111111111 0 5555555555 1 1 99999 0 3 0 0 0 0 777 777 2 5 1 5 1 1
lowQualScore : .... . . . ......................................................................... . .. . . .. . . . . . ... . . . ........ . ... .. ........ . . .. . . . .... . . ........................................................... ......... ...... .......... . . .... . .. . . . ... . .......... . .............................. . .... .................................................................. . .......... . . ..... . . . . . . ... ... . . . . . .
lowQualScore : 3333 7 4 0 1111111111111111111111111111111111111111111111111111111111111111111111111 2 99 1 7 44 4 0 0 0 0 888 3 2 1 44444444 0 444 55 11111111 1 5 88 1 0 4 5555 1 3 11111111111111111111111111111111111111111111111111111111111 555555555 555555 9999999999 4 0 7777 6 22 7 6 4 000 0 5555555555 3 111111111111111111111111111111 0 2222 000000000000000000000000000000000000000000000000000000000000000000 6 3333333333 7 7 00000 9 7 9 2 7 1 888 888 2 0 4 9 9 0
consensus : NAAAGTTAATTA----AGTCAACAATGATAAACCGGTATGGAAATTTTATTTTAATTTCAAATGCTATATATATTTTGTTTACGGTGAGTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNANC-ATCAAAACCCTCAAAATCATCTCCTTCGTTATCGCTGCCAAGCAACGATAACACGTTCTNAACCCC-TTCTCACCAACGAGGTTCTNAA---CACCTACTT-AAACGTGTCACTATT--------GNCACT---TGTCAAACGGTATTCGCGCTCTTT--------AATTCAAGATCAAAGAGATGTCAATTAGTTTCAATT-AACAGAGTGATAATCCGACAGCAGTAAAGGACGAGGAAAGTACAAG----TGGG-CGGA-GTCA-------A---------------ATTGGC---------GC--------G----------CCGCCG---------AACACC------TGCACA----------ATTTTGTTNT----CCCAA-AN-TTTTAAATTCGTTT-TGTGTTAT-TTTTAATCAATAAAC---CGAT-A----------ATAATT---------------AT-------------TCATAATTGTAAAAAA---AA--A-----A-----G-------CAAT----AC----ATNTTCGTA-AA-A---A-TA-NT----AATAT--NT------ATTACATTAAACACCATACAATTATCCCGTTAAACGGCGAGCATAAAAAATAGCGAATTGAACAGAATTTGA---AT---ATTTGCACCAGTCTAGTTAATAAATAGAAGACTTCCGGTTTAGCGAAAAGTTTTGTTGTTTTCCCATTTGGAAGTTACAGAATACACA-ATAATACCAAAAAGGGTTTATAAACTGTGTTTATTNAATAGAAATCATAAAATATAAAGCATGTAAGACATGTTTAAAACTTCGTGTGCTTTTTGCACTACGTTCAAGATGATAGGCGTCAGAAATACTGTTNTCGACTGGCCTTT
Reference ( family-2020 ) : NAAAGTTAATTA----AGTCAACAATGATAAACCGGTATGGAAATTTTATTTTAATTTCAAATGCTATATATATTTTGTTTACGGTGAGTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNANC-ATCAAAACCCTCAAAATCATCTCCTTCGTTATCGCTGCCAAGCAACGATAACACGTTCTNAACCCC-TTCTCACCAACGAGGTTCTNAA---CACCTACTT-AAACGTGTCACTATT--------GNCACT---TGTCAAACGGTATTCGCGCTCTTT--------AATTCAAGATCAAAGAGATGTCAATTAGTTTCAATT-AACAGAGTGATAATCCGACAGCAGTAAAGGACGAGGAAAGTACAAG----TGGG-CGGA-GTCA-------A---------------ATTGGC---------GC--------G----------CCGCCG---------AACACC------TGCACA----------ATTTTGTTNT----CCCAA-AN-TTTTAAATTCGTTT-TGTGTTAT-TTTTAATCAATAAAC---CGAT-A----------ATAATT---------------AT-------------TCATAATTGTAAAAAA---AA--A-----A-----G-------CAAT----AC----ATNTTCGTA-AA-A---A-TA-NT----AATAT--NT------ATTACATTAAACACCATACAATTATCCCGTTAAACGGCGAGCATAAAAAATAGCGAATTGAACAGAATTTGA---AT---ATTTGCACCAGTCTAGTTAATAAATAGAAGACTTCCGGTTTAGCGAAAAGTTTTGTTGTTTTCCCATTTGGAAGTTACAGAATACACA-ATAATACCAAAAAGGGTTTATAAACTGTGTTTATTNAATAGAAATCATAAAATATAAAGCATGTAAGACATGTTTAAAACTTCGTGTGCTTTTTGCACTACGTTCAAGATGATAGGCGTCAGAAATACTGTTNTCGACTGGCCTTT
gi|1 : -ATCAAACCCCTCAAAATCATCTTCTTCG
gi|1 : atttgtgagtattaaaaggtgttaattgttttatttattataaattatgtgtgtctgtgtatttgggtaagacaaaaaggacaataaaaacaaactattgacaattctttattaagtacagcttttgagaaatatttgggtccttaaatggaccctcactcctcacattatctacattcttcagcagtcttggatgtccgactaCTCAAAATCATCTTCTTCGAACATGTCGTTATT--------GTCACT---TATCAATTGGTATTCGCAGTCTTT--------AAATGGATATGAAAGAGATGTCAATTTGTTTCAAT--------------AT--GACAGCAGGAAAGGACGAGGAAA---CAAG----TAGG-CGGA-GTCA-------ATTTTGTAATTGCGTAATTGACTT-------GC--------AATCTACTA--CCGCCG---------AACACC------TGCACA----------ATTTTTTTTG----TCCAA-GGGTTTTAAATTCGTTT-TGTGTTAT-TTTTAATCAATAAAA---TGCT-ACAAGTTATTCATAATT---------------GTAAAAATGGTAACTTTATACTTGTAAAAAA---TATTA-----ATTATGA-------CAAT----ATGAATATTTCCATA-TATAT--A-TA-TT------TCT--TT------ATTACATTAAGCACCGTACAATTATCCCAATTAATGATCAGCATAAAAA-TAGTGAGTTGAACAGTATTTGA---AT---ATGTGCACCAGTCTAGTTAATAAATAGAAGACTTACCGTTTAACGAAAGGGTTTGTTTTTGTCTCATTTGGAAGTAATAGAATTCACA-TTAATACCAAAAATGGTTAATAAACTGTGTTTATTAAATAGAAATCATAAAATATAAAGAATGTAAGACA----------TTCCTGTGCTTTTTGCACTAGGTTCAAGATGGTAGTCGTCTGAAATACTGTTGTTGGTCGGCCTaacatgtcgttattgtcacttatcaattggtattcgcagtctttaaatggatatgaaagagatgtcaatttgtttcaatatgacagcaggaaaggacgaggaaacaagtaggcggagtcaattttgtaattgcgtaattgacttgcaatctactaccgccgaacacctgcacaattttttttgtccaagggttttaaattcgttttgtgttatttttaatcaataaaatgctacaagttattcataattgtaaaaatggtaactttatacttgtaaaaaatattaattatgacaatatgaatatttccatatatatatatttctttattacattaagcaccgtacaattatcccaattaatgatcagcataaaaatagtgagttgaacagtatttgaatatgtgcaccagtctagttaataaatagaagacttaccgtttaacgaaagggtttgtttttgtctcatttggaagtaatagaattcacattaataccaaaaatggttaataaactgtgtttattaaatagaaatcataaaatataaagaatgtaagacattcctgtgctttttgcactaggttcaagatggtagtcgtctgaaatactgttgttggtcggcct
gi|10 : atttgtgagtattaaaaggtgttaattgttttatttattataaattatgtgtgtctgtgtatttgggtaagacaaaaaggacaataaaaacaaactattgacaattctttattaagtacagcttttgagaaatatttgggtccttaaatggaccctcactcctcacattatctacattcttcagcagtcttggatgtccgactaatcaaacccCAATAAAC---TGAT-A----------ATAATT---------------AT-------------TCATAAGTGTTAAAGA---AA--T-----------G-------AAAT----TC----ATA---GTA-AA-ATCAA-TA-TTTTCAAATAT--ATTTCTTTATTACATTAAACCCCATACAATTATCCCGT---------------AAAAATAGTGAATTGAACAGATGTTGA---ATTATATTTGTACCAGTCTAGTTAATAAATTGATGACTTCCAGTTTAGAGAAAAGTTTTGTTGTTTTCCCATTTGGAAATCACAGAAAACACA-ATAATACATCAAAGAGTTTGTAAAGTGCGTTTATTTAACAGAAATAATAAAATATAAAGCATTTTAGACATGTTTAAAACTTTGTGTGCTTTTTGCACTACGTTCAGGATGATAGGCATCAGAAATACTGTTCTCAACTGGCCTT
gi|11 : AAAGTTAATTA----AGTTAACAGTGATAAACTGGTATGGAAGTTTTGTTTTAATTTCAAATGCTATATATATTTTGTTTCTGGT-AGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTACCAAAACCCTCAAAATCATCT---TCGTTATTGCTGCCAAGCAACAATAACACGTTCTAAACCCC-TTGTCACCAACGAGGTTCTGAA---CACCTACAT-ACACGTGTCACTATT--------
gi|12 : AA---CACCTACTT-TAACTTGTCACTGGT--------GTCAAG---TATCAAATGGTATTCATACTCTTT--------AATTGAAGATTAAAGAGATTTGTATTACTT----TT-AGCA---TGATAATTTGAGAGCATGATAGGATAGGGAAAGGACAAG----GGGG-C--ATGTCAATTTTGTA---------------ATTGGC---------AT--------GAAATTTACTACTGCTGAACAATAATAACACC------TATATATACCTTTTGTGTTTTGTTTT----TCCAACAT-TTTTACATCTGTTT-
gi|14 : CTATTT-AAACATGTCACTATTTGGATAACGTTATTAAGCATCAAACAGTATTCGCACACTCTCACAGTCAAACTGAACATCAAAGCAATGT--ATTAGTGTCGATGAAACAATGTGATATACTGACAG-AATTAAGGATGAGAAAGGAACAAG----GGAG-TGGA-GCCA-------A---------------TTT
gi|15 : aaTCGTT--------AATTCAAGATCAAAGAGATGT----TAGTTTCAATA-AACAGAGTGACAATCTGACAGCAGTAAAGGAGGCGGAAAGTACAAG----TGGG-TGGA-GTCA-------A---------------ATTG-----------GT--------G----------CCGCCG---------AACACC------TGCAAA----------ATTTTCTTGA----CCCAA-A--TTTTAAATTTGTTT-Ttttgattgccatgta
gi|17 : AATAGAAATCGTAAAATATTAAGGACATAAGACATGTTTTAAACTTCATGAGCAGATTGCACtta
gi|2 : tacaaaatagtacagatcctcaaaatttgtagggaaatcttcaggtcagttttatatacggAAAGTTAATTATTAAAGTCAACAATGATAAACCGGTATGGAAATTTTATTTTAATTTCAAATGCTATATATATTTTGTTTATGGT-AGTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-ATCAAAACCCTAAAAAGCATCTCCTTCATTATCGATGCCAAGCAGCGATAACACGTTCTAAACCCC-TTCTTACCAACGAGGTTCTGAA---CACCTACCT-ACACATGTCACTATT--------GACACT---TGTCAAACGGTATTCGCGCTTTTT--------AATTTAAGATCAAAGAGATGTCAATTAGTTTAAATT-AACAGAGAGATAATCCGACAGCAGTAAAGGATAAGGAAAGTACAAG----GGGG-CGGA-GTCA-------A---------------ATTAGC---------AT--------------------CGCCG---------AACACC------TGCACA----------ATTTTGTTCT----CCCAA-AG-TTTTAAATTTGTTT-TGTGTTAT-TTTTAATCAATAAAC---CAAT-A----------ATAATT---------------AT-------------TCATAATTGTAAAAAA---AA--A-----A-----G-------CAAT----AC----ATTTTTGTA-AA-A---A-TA-GT----AATAT--AT------ATTACATTAAACACCATACAATTATCGCATTAAACGGCGAGCATAAAAAATAGCAAATTTTTCAGAATTTGA---AT---ATTTGCACCAGTCTAGTGAATAAATAGAAGACTTTCAGTTCAACGAAAAGTTTTGTTGTTTTCCCGTTTGGAAGTTACAGAATACACA-ATAATACCAAAAAGGGTTAATAAACTTTGTTTATTTAATAGAAATCATAAAATATAAAGCATGTAAGACATGTTTAAAACTCTGTTTGCTTTTTGCACTACGTTCAAGAGGATAGGCATCAGAAATACTGTTCTCGGCTGGCCTTTga
gi|20 : tAAACCCTCAAAATCATCTTCTTTGTTGTCGCTGTCA
gi|21 : cccggatgtcggactcatcaaaccttcgtcAAATTTTATTTTAATTTCAAATGCTTTATATATTTTGTTTACGGTGAGTAT
gi|22 : AAATTTTATTTTAATTTCAAATGCTTTATATATTTTGTTTACGGTGAGTATgcaa
gi|23 : CAATGATAACACATTCTCAATCCC-TTCTCgca
gi|3 : ttcttcacaatttatcctcaTCAAAACCCTCAAAGTCATCTC--------------------------AACACATTCTCAACCCCCTTCTCACCCACCAGGTTCTCAA---CACCTACTC-AAATGTGTCACTATTATATT---GCCACT---TGTCAAACGGTATTCAC--TCTTT--------AATTCAAGATCAAAGTCATGTCAGTTAGTTTCACTT-AACAGAGTGATAATCCAACTGCAGTAAGTGATGAGGAAAGTACAAG----TGGG-CGGA-GTCA-------A---------------GTTGGC---------GT--------------------CGCCG---------AACACC------TGCGCA----------ATTTTTTTGT----CCCAA-AT-TTTTAAATTTGTTT-TTTGTCAT-CTTTAATCGATAAAC---TGAC-A----------AT---T---------------AT-------------T----ATTGTAAAAAA---TA--------------G-------TAAT----ATTAATATTTTCATA-TA-------TA-TT------TCT--TT------ATTACATTAAACCCCATACAATTATCCCGTTCAATGGCAGGCGTAAAAATT-GTGGATTGAACAGAATTTAA---AT---ATTTGCACCAGTCTAGTTAATAAATAGAAGATTTCCTGTGTAACGATAGGTTTTGTTGTTTTCCAATTTAGAAGTTACAGAATACACATAAAATACAAAAAAGGGTTTATAAACTGTGTTTATTAAAAAGAAATCGTAAAATATAAAGCATTTAAGACATGTTTAAAACTTCCTGTGCTTTTTGCCCTACGTTCAATATGATAGTCGTCAGAAATATTGTTGTCGACTGGACTTT
gi|4 : tgctactataaaatggtgttaccgttataacttttatgtgtaagtgtatttgggtaagataaagggaaaataaaaacaaacttttaacatttttttaagtgcatctttctagaaatatctgggtcctaaaaaggaccatcaccgtctcactgtatctgcatcattcagcagtctctgatgtccgacttgAAAGTTAATTA----AGTCAACAATGATAAACTGGTATGGAAATTGTATTTTAATTTCAAATGCTATGTATATTTTGTTTATGGT-AGTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACT-ATCAAAACCCTTAAAATCATCTCCTTC-----------CAAGCAACGATAACACGTTCTAAACCCC-TGCTCACCAACAAGGTTCTGAA---CACCTACAT-ACATGTGTCACTATT--------GACACT---TGTCAAACGGTATTCATGCTTTTT--------AATTCAAGATCAAAG-------------TTTCAATT-AATAGAGTGATAATCCGACAGCAGTAAAAGACAAGGAAAGTACAAG----TGGG-CGGA-GTCA-------A---------------ATTAGC---------GT--------------------CGCCA---------AACACC------TGCACA----------ATTTTGTTCT----CCCAA-AG-TTTTAAATT---------GTTATATTTTAATCAATAAAC---CGAT-A----------ACAATC---------------AT-------------TCATTATCGT-AAAAG---AA--A-----A-----G-------CAAA----AC----ATAATTGTA-AA-A---A-AATAT----AATAT--AT------ATTACATTAAACACAATACAATTATCCCATTAAACGGCGAGCTTAAAAAATAGCGAATTTAACAGAATTTGA---AT---ATTTGCACCAGTCTAGTGAATAAATAGAAGACTTCCGGTTTAGCGAAAAGTTTTGTTGTTTTCCTATTTGGAAGTTACAGAATACACA-ATAATACCAAAAAGGGTTTATAAACTTTGTTTATT-AATTGAACTTATAAAATATTAAGCATGTAAGACTTGTTTAAAACTTTGTGTGCTTTTTGCACTACGTTCAAGATGATAGGCATCAGAAATACTGTTCTCGGCTGGCCTTT
gi|5 : -ATCAAAACCTTCAAAATCATCTCCTTCATTATCGCTGCCGAGCAAAGATAACACGTTCTAAACCCC-TTCTCACCAATGAGGTTCTGAA---CACCTACAT-ACACGTGTCACTATT--------GACACT---TGTCAAATGGTATTCACGCTTTTT--------AATTTAAGATCAAAGAGATGTCAATTAGTTTCAATT-AACAGAGTGATAATCCGACAGCAGTAAATGAAAACTAAAGTACAAG----TGGG-CAGA-GTAA-------A---------------ATTAGC---------AT--------------------CGCTG---------AACACG------TGCACA----------ATTTTGTTCT----CCCAA-AA-TTTTTAATTTTTTA-TGTGTTAT-----AATCAATAAAC---CGAT-A----------ATGATT---------------AT-------------TCATAATTGTAAAAGG---AA--------------G-------CAAA----AC----ATAGTTGTA-AA-A---AATA-GT----AATAT--AT------ATTACATTAAACACCATACAATTATCCCATTACATGGCAAGCATAAAAAATAGCGAATTTAACAGAATTTGA---AT---ATTTGCACCAGTCTTGTGAATAAATAGAAGACTTCCAGTTTAGCAAAAAGTTTTGTTGTTTTCCTGTTTGGAAGTTACAGAATACACA-ATAATACCAAAAAGGGTTCATAAACTTTGTTTATTAAATAGAAATCATAAAATATAAAGCATGTAAGACATGTTTAAAACTTTGTGTGCTTTTTGCACTACATTCAGGATGATAGGCATCAGAAATACTGCTGTCTACTGGCTT
gi|6 : tCAACGATAACACGTTATCAACCCC-TTCTCACCCACCAGGTTCTCAA---CACCTTCTC-AGACATGTCACTATT--------GCCACA---TGTCAAACGATATTCATACTCGTT--------AATTCAAGATCAAAGAGATGTCAATTAGTTTCAATT-AACAGAGTGATAATCTGACGGCAGGAAAGGACGTGGAAAGTACAAG----TGGG-CAGA-GTCA-------A---------------ATTG-----------GC--------G----------CCGCCG---------ATCACC------TGCACA----------ATTCTCTTGT----CCCAA-AT-TTTTAAATTCGTTT-TGTAATAT-TCTTAATCAATAAAC---TGAT-A----------ATAATT---------------AT-------------TCATTAGTGTTAAAAACTGAA--ATTCATA-----G-------TAATATCAAT----ATTTTCAT---T-T---A-TA-TT------TCT--TT------ATTACATTAAACCCCATACAATTATCCCGT---------------AAAAATAGTGAATTGAACAGGTGTTGAATTAT---ATTTGTACCAGTCTAGTTAATAAATTGATGACTTCCGGTTTAGCGAAAAGTTTTGTTGTTTTCCCATTTGGAAGTTACAGAATACACA-ATAATACATCAAAGGGTTTGTAAACTACGTTTATTTAATACAAATAATAAAATATAAAGCATGTTAGACATGTTTAAGACTTCATGTGCTTTTTGCACAACGTTCAGGATGATAGGCATCAGAAATACTGTTCTCGACTGGCCTTT
gi|7 : tctttactatttatcccca-AAACATGTCACTTTT--------GTCACT---TATCAAATGGTATTTG---------------------AAGATCAAAGAGATGTCAATTAGTTTCAATC-AACAGAGTGATAATCTGACAGCAGGGAAGGACGAG---------------TGGG-CGGA-GTCA-------ATTTTGTA--------ATTGGCTTGTAATTTACT-------G----------CCACTG---------GACACC------TGCACA----------ATTTTGTTAT----CCCAG-AT-TTTTAAATTTGTTT-TGTGTTAT-TTTTAATCAATAAACTTTCTATTC----------ATAATTGTAAAATAAATGGAAAT-------------TCATAATTGTAAAAAA---TATTA-----A-----GTGTACATCAAT----A------TTTTCATA-TA-------TA-TT------TCT--TT------ATTACGTTAAACACCACACAATTAACCCATTAAATGACGAGCATAAAAA-TAGTGAATTAAACAGAGTATGA---AT---ATTTGCACCAGTCTAGTTAATAAATAGAAGACTTCCGGTTTAAGGAAGAGTTTTGTTGTTTTCACATTTGGAAGTAACAGAATACACA-ATAATACCAAAAGTGGTTTATAAACTGTGTTTATTAAATTGAAATCATAAAATATAAAAAATGCAAGACATGTTTAAAACTTCCTGTTCTTATTGCACTACGTTCAAGATGATGGTCGTCAGAAATGCTGTTGTTGATTTGCCTTT
gi|8 : C-ATCAAAACCCTCAAAGCCATCTCCTTTGATGTCGCTTTCAAGCAAC---AAAACGTTCTCA--------CCCACCAGCTAGGTTCTCAA---CACCTACTC-AAACGTGTCACTATT--------GCCACT---TGTCAAACGGTATTCATACTCTCT--------AATTCAAGATCAATGAGATGTCAATTAGTTTCAATT-AACAGAGTGATAATCCGACAGCAGTAAAGGACAAGGAAAGTATAAG----TGGG-CGGT-GTCA-------A---------------ATTG-----------GC--------A----------CCACTG---------AACACC------TGCACA----------ATTTTGTTGT----CCCAA-TT-TTTTAAATTCGTTT-TGCGTTAT-TTTTAATCGATAAAC---TGAT-A----------ATAATT---------------AT-------------TCATATTTGT-AAAAA---CA--A-----T-----G-------AAAT----TC----ATAATTTTAGAA-A---A-TA-GT----AATATCAGT------ATT
gi|9 : aagtttaaaatggtgttaccataataatttttatgtgtatttgagtaagatataagggacaataaaaactattgaccattttttaagtacatctatcaagaaatatttggaacctaaaaaatgaccatctccctctcactgtatctccatcattcagctgtctctgatgtctgactCTT-AAACATGTTAGTATT--------GTCAAG---TATGGAAGGGAATTTGCGCTCTTT--------AATTGAAGATCAA-GAGAT--CAATTAGTTTCAATT-AGTGCACTTATAATCTCACAGCAGGAAAGGACAAGGGAG----AGG----TGGG-ttcatatatatatttctttattacattgaacacta
gi|9 : GAGGGGGGTGTAGGGGGATGGGTCGGA-GTCAGTTTTGTA---------------ATTGGCAT-------GCAATTAACAG----------CCGCCA---------AACATTGACAAATGCACATA--------ACTTTCTTTTTTGTCATAG-AG-TTTTAAATTTGTTTATGTAA-AT-TTTCAATCCATAAAC---TGTT-G----------TT--TT---------------TT-------------TCATAGCTATAAAAAA---AA-------------------------------------TCTT-----------------AC----AATAT-----------TTACAT--------ATATA--TAT----TTAA-TGACAACCATAAAAA-TAGTGAATTGATCAGGATTTAA---AT---ATTTGTACCAGTCTAGTTAgtgggttagtgttagtggtggaggggggtgtagggggatgggtcggagtcagttttgtaattggcatgcaattaacagccgccaaacattgacaaatgcacataactttcttttttgtcatagagttttaaatttgtttatgtaaattttcaatccataaactgttgtttttttcatagctataaaaaaaatcttacaatatttacatatatatatttaatgacaaccataaaaatagtgaattgatcaggatttaaatatttgtaccagtctagttatacacattatattatagacttgcagtgta
blockSeqs : TTAA A G NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN AT A GC G A C G G . . TGGATAAC T AAG TA CACAGTCA G G GA G GGGA T T ATTTTGTAATTGGCATGAAATTTACTA AACAATAAT GACAAA TACCTTTTGT G T TTGT C T T A A TTT T . A GTAAAATAAATGGAAAT T CTGA ATTCATAGTAATATCAATATTTTCATTTATATT ATTTCTTT C G TAAAC G A ATT TAT A T G T G C
blockSeqs : . T G NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACT GT G GT G C . C G . . ATATT T . CA . G C T T . . . ATTTTGTAATTGGCTTGTAATTTACTG . . TA C G . . G T . . . . . A AT A A TGAAATTCATAGTAAAATCAATATTTTCAAA CAGT A A TCAAT A A . . A . T T A C
blockSeqs : T . AT A GC G C . A C . . . A . CG . C C A T . . . GTTTTGTAATTGGCATGCAATTAACAG . . . G C . . T T . . . . . A AT A A TTAAGTGTACATCAATATTTTCATATATATT AT C G TAAAC G T . . T . G A G G
blockSeqs : A . GA G TT G A . G G . . . C . TG . T C T T . . . AATTAGCAT . . . T G . . G T . . . . . G AT A T AAGCAAAACATAATTGTAAAAAAATATAA TT A A TACAT A A . . G . T A C C
blockSeqs : . . . G A . C G . . . A . CG . C C T T . . . AGTTGGCGT . . . G C . . A T . . . . . A AT T A ATGAAATTCATAATTTTAGAAAATAGTAA AT A A TAAAT G A . . A . T T G G
blockSeqs : . . . . C . T C . . . A . TA . C C T T . . . AATTAGCGT . . . G C . . T C . . . . . A AT A A AAGCAATACATTTTTGTAAAAATAGTAA AT C G TAAT A A . . G . A A G C
blockSeqs : . C . C . . . C . TA . T C T T . . . AATTAGCAT . . . C G . . T T . . . . . A AT A T GCAAAACATAGTTGTAAAAAATAGTAA TT A A . . . . . G . G . A G
blockSeqs : . . . T . CG . C C T G . . . AATTGGTG . . . G A . . T C . . . . . . AT . C GTAATATTAATATTTTCATATATATT TT . . . . . . . C
blockSeqs : . . C . C . C . C G . . . AATTGGCG . . . G G . . G T . . . . . TT . A TCTTACAA .
blockSeqs : . . T . . . G . T T . . . AATTGGCA . . . C T . . . . .
blockSeqs : . . . . . T G . . .
blockSeqs : . .
blockSeqCons : *** T* T* ********** AT****************************
originalCons : NAAAGTTAATTA----AGTCAACAATGATAAACCGGTATGGAAATTTTATTTTAATTTCAAATGCTATATATATTTTGTTTACGGTGAGTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNANC-ATCAAAACCCTCAAAATCATCTCCTTCGTTATCGCTGCCAAGCAACGATAACACGTTCTNAACCCC-TTCTCACCAACGAGGTTCTNAA---CACCTACTT-AAACGTGTCACTATT--------GNCACT---TGTCAAACGGTATTCGCGCTCTTT--------AATTCAAGATCAAAGAGATGTCAATTAGTTTCAATT-AACAGAGTGATAATCCGACAGCAGTAAAGGACGAGGAAAGTACAAG----TGGG-CGGA-GTCA-------A---------------ATTGGC---------GC--------G----------CCGCCG---------AACACC------TGCACA----------ATTTTGTTNT----CCCAA-AN-TTTTAAATTCGTTT-TGTGTTAT-TTTTAATCAATAAAC---CGAT-A----------ATAATT---------------AT-------------TCATAATTGTAAAAAA---AA--A-----A-----G-------CAAT----AC----ATNTTCGTA-AA-A---A-TA-NT----AATAT--NT------ATTACATTAAACACCATACAATTATCCCGTTAAACGGCGAGCATAAAAAATAGCGAATTGAACAGAATTTGA---AT---ATTTGCACCAGTCTAGTTAATAAATAGAAGACTTCCGGTTTAGCGAAAAGTTTTGTTGTTTTCCCATTTGGAAGTTACAGAATACACA-ATAATACCAAAAAGGGTTTATAAACTGTGTTTATTNAATAGAAATCATAAAATATAAAGCATGTAAGACATGTTTAAAACTTCGTGTGCTTTTTGCACTACGTTCAAGATGATAGGCGTCAGAAATACTGTTNTCGACTGGCCTTT
finalCons : NAAAGTTAATTA----AGTCAACAATGATAAACCGGTATGGAAATTTTATTTTAATTTCAAATGCTATATATATTTTGTTTACGGTGAGTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNANC-ATCAAAACCCTCAAAATCATCTCCTTCGTTATCGCTGCCAAGCAACGATAACACGTTCTNAACCCC-TTCTCACCAACGAGGTTCTNAA---CACCTACTT-AAACGTGTCACTATT--------GNCACT---TGTCAAACGGTATTCGCGCTCTTT--------AATTCAAGATCAAAGAGATGTCAATTAGTTTCAATT-AACAGAGTGATAATCCGACAGCAGTAAAGGACGAGGAAAGTACAAG----TGGG-CGGA-GTCA-------A---------------ATTGGC---------GC--------G----------CCGCCG---------AACACC------TGCACA----------ATTTTGTTNT----CCCAA-AT-TTTTAAATTCGTTT-TGTGTTAT-TTTTAATCAATAAAC---CGAT-A----------ATAATTAT----------------------------TCATAATTGTAAAAAA---AA--A-----A-----G-------CAAT----AC----ATNTTCGTA-AA-A---A-TA-NT----AATAT--NT------ATTACATTAAACACCATACAATTATCCCGTTAAACGGCGAGCATAAAAAATAGCGAATTGAACAGAATTTGA---AT---ATTTGCACCAGTCTAGTTAATAAATAGAAGACTTCCGGTTTAGCGAAAAGTTTTGTTGTTTTCCCATTTGGAAGTTACAGAATACACA-ATAATACCAAAAAGGGTTTATAAACTGTGTTTATTNAATAGAAATCATAAAATATAAAGCATGTAAGACATGTTTAAAACTTCGTGTGCTTTTTGCACTACGTTCAAGATGATAGGCGTCAGAAATACTGTTNTCGACTGGCCTTT
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTTGCGAATATATAAAGTGTTAAATGATTTATTTATTAAATGTGTGTTTGAATTTGGATACGGCTAAAGGGAAAATAAAAACAAACTATTGACAATTTTTTTAACACATCTTTCGAGATGTTTCTTCGGTCCTTAAAAGTCCCCTCACTCCTCTCTCCTTCAGCAATCTCGGGTGTCAGGCTTATCAAATCCTTCAAAATTATCTTCTT
Unaligned ( gi|16 ): TTTGCAAGTATAAAATGGTGGTACCATTTATTTACGTGTATTTGGGTAAGACAAAAGGGAAAATAAAAACAAACAATTGACAATTGTTTAAGTACATCTTTCGAGCAGTATTTGGGTCCTAAAAAGTACCACCACCCTCTTACTGTCCAATC
Unaligned ( gi|18 ): TTTGCAAATATATAATGGTGTTAATTATTGTATTTATTAATATGTGTGTGTAAACGGGTAAGACAAAAGGGAAAATAAAAACAAACTATTAACG
Unaligned ( gi|19 ): TAAGTGTATCTTTCGAGAAATATTTGGGTCCTAAAAGGACCCTCACTCCTCACTGTATCTACATCCTTTGGCAATCT
Alignments
lowQualScore : 2222 2 7777777777777777777777777777777777777777777777777777777777777777777777777 22222222 11111111 99999999999999999999999999999999999999999999999999999999999 111111111 111111 2222222222 11 1111111111 333333333333333333333333333333 888888888888888888888888888888888888888888888888888888888888888888 1111111111 1
lowQualScore : 8888 0 1 0 1111111111111111111111111111111111111111111111111111111111111111111111111 0 44 2 0 22 1 1 5 3 1 777 3 0 0 00000000 1 666 44 22222222 3 2 33 0 1 0 6666 3 3 33333333333333333333333333333333333333333333333333333333333 444444444 000000 0000000000 1 1 7777 3 00 4 3 4 777 4 7777777777 2 333333333333333333333333333333 6 8888 111111111111111111111111111111111111111111111111111111111111111111 0 5555555555 1 1 99999 0 3 0 0 0 0 777 777 2 5 1 5 1 1
lowQualScore : .... . . . ......................................................................... . .. . . .. . . . . . ... . . . ........ . ... .. ........ . . .. . . . .... . . ........................................................... ......... ...... .......... . . .... . .. . . . ... . .......... . .............................. . .... .................................................................. . .......... . . ..... . . . . . . ... ... . . . . . .
lowQualScore : 3333 7 4 0 1111111111111111111111111111111111111111111111111111111111111111111111111 2 99 1 7 44 4 0 0 0 0 888 3 2 1 44444444 0 444 55 11111111 1 5 88 1 0 4 5555 1 3 11111111111111111111111111111111111111111111111111111111111 555555555 555555 9999999999 4 0 7777 6 22 7 6 4 000 0 5555555555 3 111111111111111111111111111111 0 2222 000000000000000000000000000000000000000000000000000000000000000000 6 3333333333 7 7 00000 9 7 9 2 7 1 888 888 2 0 4 9 9 0
consensus : NAAAGTTAATTA----AGTCAACAATGATAAACCGGTATGGAAATTTTATTTTAATTTCAAATGCTATATATATTTTGTTTACGGTGAGTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNANC-ATCAAAACCCTCAAAATCATCTCCTTCGTTATCGCTGCCAAGCAACGATAACACGTTCTNAACCCC-TTCTCACCAACGAGGTTCTNAA---CACCTACTT-AAACGTGTCACTATT--------GNCACT---TGTCAAACGGTATTCGCGCTCTTT--------AATTCAAGATCAAAGAGATGTCAATTAGTTTCAATT-AACAGAGTGATAATCCGACAGCAGTAAAGGACGAGGAAAGTACAAG----TGGG-CGGA-GTCA-------A---------------ATTGGC---------GC--------G----------CCGCCG---------AACACC------TGCACA----------ATTTTGTTNT----CCCAA-AN-TTTTAAATTCGTTT-TGTGTTAT-TTTTAATCAATAAAC---CGAT-A----------ATAATT---------------AT-------------TCATAATTGTAAAAAA---AA--A-----A-----G-------CAAT----AC----ATNTTCGTA-AA-A---A-TA-NT----AATAT--NT------ATTACATTAAACACCATACAATTATCCCGTTAAACGGCGAGCATAAAAAATAGCGAATTGAACAGAATTTGA---AT---ATTTGCACCAGTCTAGTTAATAAATAGAAGACTTCCGGTTTAGCGAAAAGTTTTGTTGTTTTCCCATTTGGAAGTTACAGAATACACA-ATAATACCAAAAAGGGTTTATAAACTGTGTTTATTNAATAGAAATCATAAAATATAAAGCATGTAAGACATGTTTAAAACTTCGTGTGCTTTTTGCACTACGTTCAAGATGATAGGCGTCAGAAATACTGTTNTCGACTGGCCTTT
Reference ( family-2020 ) : NAAAGTTAATTA----AGTCAACAATGATAAACCGGTATGGAAATTTTATTTTAATTTCAAATGCTATATATATTTTGTTTACGGTGAGTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNANC-ATCAAAACCCTCAAAATCATCTCCTTCGTTATCGCTGCCAAGCAACGATAACACGTTCTNAACCCC-TTCTCACCAACGAGGTTCTNAA---CACCTACTT-AAACGTGTCACTATT--------GNCACT---TGTCAAACGGTATTCGCGCTCTTT--------AATTCAAGATCAAAGAGATGTCAATTAGTTTCAATT-AACAGAGTGATAATCCGACAGCAGTAAAGGACGAGGAAAGTACAAG----TGGG-CGGA-GTCA-------A---------------ATTGGC---------GC--------G----------CCGCCG---------AACACC------TGCACA----------ATTTTGTTNT----CCCAA-AT-TTTTAAATTCGTTT-TGTGTTAT-TTTTAATCAATAAAC---CGAT-A----------ATAATT---------------AT-------------TCATAATTGTAAAAAA---AA--A-----A-----G-------CAAT----AC----ATNTTCGTA-AA-A---A-TA-NT----AATAT--NT------ATTACATTAAACACCATACAATTATCCCGTTAAACGGCGAGCATAAAAAATAGCGAATTGAACAGAATTTGA---AT---ATTTGCACCAGTCTAGTTAATAAATAGAAGACTTCCGGTTTAGCGAAAAGTTTTGTTGTTTTCCCATTTGGAAGTTACAGAATACACA-ATAATACCAAAAAGGGTTTATAAACTGTGTTTATTNAATAGAAATCATAAAATATAAAGCATGTAAGACATGTTTAAAACTTCGTGTGCTTTTTGCACTACGTTCAAGATGATAGGCGTCAGAAATACTGTTNTCGACTGGCCTTT
gi|1 : -ATCAAACCCCTCAAAATCATCTTCTTCG
gi|1 : atttgtgagtattaaaaggtgttaattgttttatttattataaattatgtgtgtctgtgtatttgggtaagacaaaaaggacaataaaaacaaactattgacaattctttattaagtacagcttttgagaaatatttgggtccttaaatggaccctcactcctcacattatctacattcttcagcagtcttggatgtccgactaCTCAAAATCATCTTCTTCGAACATGTCGTTATT--------GTCACT---TATCAATTGGTATTCGCAGTCTTT--------AAATGGATATGAAAGAGATGTCAATTTGTTTCAAT--------------AT--GACAGCAGGAAAGGACGAGGAAA---CAAG----TAGG-CGGA-GTCA-------ATTTTGTAATTGCGTAATTGACTT-------GC--------AATCTACTA--CCGCCG---------AACACC------TGCACA----------ATTTTTTTTG----TCCAA-GGGTTTTAAATTCGTTT-TGTGTTAT-TTTTAATCAATAAAA---TGCT-ACAAGTTATTCATAATT---------------GTAAAAATGGTAACTTTATACTTGTAAAAAA---TATTA-----ATTATGA-------CAAT----ATGAATATTTCCATA-TATAT--A-TA-TT------TCT--TT------ATTACATTAAGCACCGTACAATTATCCCAATTAATGATCAGCATAAAAA-TAGTGAGTTGAACAGTATTTGA---AT---ATGTGCACCAGTCTAGTTAATAAATAGAAGACTTACCGTTTAACGAAAGGGTTTGTTTTTGTCTCATTTGGAAGTAATAGAATTCACA-TTAATACCAAAAATGGTTAATAAACTGTGTTTATTAAATAGAAATCATAAAATATAAAGAATGTAAGACA----------TTCCTGTGCTTTTTGCACTAGGTTCAAGATGGTAGTCGTCTGAAATACTGTTGTTGGTCGGCCTaacatgtcgttattgtcacttatcaattggtattcgcagtctttaaatggatatgaaagagatgtcaatttgtttcaatatgacagcaggaaaggacgaggaaacaagtaggcggagtcaattttgtaattgcgtaattgacttgcaatctactaccgccgaacacctgcacaattttttttgtccaagggttttaaattcgttttgtgttatttttaatcaataaaatgctacaagttattcataattgtaaaaatggtaactttatacttgtaaaaaatattaattatgacaatatgaatatttccatatatatatatttctttattacattaagcaccgtacaattatcccaattaatgatcagcataaaaatagtgagttgaacagtatttgaatatgtgcaccagtctagttaataaatagaagacttaccgtttaacgaaagggtttgtttttgtctcatttggaagtaatagaattcacattaataccaaaaatggttaataaactgtgtttattaaatagaaatcataaaatataaagaatgtaagacattcctgtgctttttgcactaggttcaagatggtagtcgtctgaaatactgttgttggtcggcct
gi|10 : atttgtgagtattaaaaggtgttaattgttttatttattataaattatgtgtgtctgtgtatttgggtaagacaaaaaggacaataaaaacaaactattgacaattctttattaagtacagcttttgagaaatatttgggtccttaaatggaccctcactcctcacattatctacattcttcagcagtcttggatgtccgactaatcaaacccCAATAAAC---TGAT-A----------ATAATT---------------AT-------------TCATAAGTGTTAAAGA---AA--T-----------G-------AAAT----TC----ATA---GTA-AA-ATCAA-TA-TTTTCAAATAT--ATTTCTTTATTACATTAAACCCCATACAATTATCCCGT---------------AAAAATAGTGAATTGAACAGATGTTGA---ATTATATTTGTACCAGTCTAGTTAATAAATTGATGACTTCCAGTTTAGAGAAAAGTTTTGTTGTTTTCCCATTTGGAAATCACAGAAAACACA-ATAATACATCAAAGAGTTTGTAAAGTGCGTTTATTTAACAGAAATAATAAAATATAAAGCATTTTAGACATGTTTAAAACTTTGTGTGCTTTTTGCACTACGTTCAGGATGATAGGCATCAGAAATACTGTTCTCAACTGGCCTT
gi|11 : AAAGTTAATTA----AGTTAACAGTGATAAACTGGTATGGAAGTTTTGTTTTAATTTCAAATGCTATATATATTTTGTTTCTGGT-AGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTACCAAAACCCTCAAAATCATCT---TCGTTATTGCTGCCAAGCAACAATAACACGTTCTAAACCCC-TTGTCACCAACGAGGTTCTGAA---CACCTACAT-ACACGTGTCACTATT--------
gi|12 : AA---CACCTACTT-TAACTTGTCACTGGT--------GTCAAG---TATCAAATGGTATTCATACTCTTT--------AATTGAAGATTAAAGAGATTTGTATTACTT----TT-AGCA---TGATAATTTGAGAGCATGATAGGATAGGGAAAGGACAAG----GGGG-C--ATGTCAATTTTGTA---------------ATTGGC---------AT--------GAAATTTACTACTGCTGAACAATAATAACACC------TATATATACCTTTTGTGTTTTGTTTT----TCCAACAT-TTTTACATCTGTTT-
gi|14 : CTATTT-AAACATGTCACTATTTGGATAACGTTATTAAGCATCAAACAGTATTCGCACACTCTCACAGTCAAACTGAACATCAAAGCAATGT--ATTAGTGTCGATGAAACAATGTGATATACTGACAG-AATTAAGGATGAGAAAGGAACAAG----GGAG-TGGA-GCCA-------A---------------TTT
gi|15 : aaTCGTT--------AATTCAAGATCAAAGAGATGT----TAGTTTCAATA-AACAGAGTGACAATCTGACAGCAGTAAAGGAGGCGGAAAGTACAAG----TGGG-TGGA-GTCA-------A---------------ATTG-----------GT--------G----------CCGCCG---------AACACC------TGCAAA----------ATTTTCTTGA----CCCAA-A--TTTTAAATTTGTTT-Ttttgattgccatgta
gi|17 : AATAGAAATCGTAAAATATTAAGGACATAAGACATGTTTTAAACTTCATGAGCAGATTGCACtta
gi|2 : tacaaaatagtacagatcctcaaaatttgtagggaaatcttcaggtcagttttatatacggAAAGTTAATTATTAAAGTCAACAATGATAAACCGGTATGGAAATTTTATTTTAATTTCAAATGCTATATATATTTTGTTTATGGT-AGTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-ATCAAAACCCTAAAAAGCATCTCCTTCATTATCGATGCCAAGCAGCGATAACACGTTCTAAACCCC-TTCTTACCAACGAGGTTCTGAA---CACCTACCT-ACACATGTCACTATT--------GACACT---TGTCAAACGGTATTCGCGCTTTTT--------AATTTAAGATCAAAGAGATGTCAATTAGTTTAAATT-AACAGAGAGATAATCCGACAGCAGTAAAGGATAAGGAAAGTACAAG----GGGG-CGGA-GTCA-------A---------------ATTAGC---------AT--------------------CGCCG---------AACACC------TGCACA----------ATTTTGTTCT----CCCAA-AG-TTTTAAATTTGTTT-TGTGTTAT-TTTTAATCAATAAAC---CAAT-A----------ATAATT---------------AT-------------TCATAATTGTAAAAAA---AA--A-----A-----G-------CAAT----AC----ATTTTTGTA-AA-A---A-TA-GT----AATAT--AT------ATTACATTAAACACCATACAATTATCGCATTAAACGGCGAGCATAAAAAATAGCAAATTTTTCAGAATTTGA---AT---ATTTGCACCAGTCTAGTGAATAAATAGAAGACTTTCAGTTCAACGAAAAGTTTTGTTGTTTTCCCGTTTGGAAGTTACAGAATACACA-ATAATACCAAAAAGGGTTAATAAACTTTGTTTATTTAATAGAAATCATAAAATATAAAGCATGTAAGACATGTTTAAAACTCTGTTTGCTTTTTGCACTACGTTCAAGAGGATAGGCATCAGAAATACTGTTCTCGGCTGGCCTTTga
gi|20 : tAAACCCTCAAAATCATCTTCTTTGTTGTCGCTGTCA
gi|21 : cccggatgtcggactcatcaaaccttcgtcAAATTTTATTTTAATTTCAAATGCTTTATATATTTTGTTTACGGTGAGTAT
gi|22 : AAATTTTATTTTAATTTCAAATGCTTTATATATTTTGTTTACGGTGAGTATgcaa
gi|23 : CAATGATAACACATTCTCAATCCC-TTCTCgca
gi|3 : ttcttcacaatttatcctcaTCAAAACCCTCAAAGTCATCTC--------------------------AACACATTCTCAACCCCCTTCTCACCCACCAGGTTCTCAA---CACCTACTC-AAATGTGTCACTATTATATT---GCCACT---TGTCAAACGGTATTCAC--TCTTT--------AATTCAAGATCAAAGTCATGTCAGTTAGTTTCACTT-AACAGAGTGATAATCCAACTGCAGTAAGTGATGAGGAAAGTACAAG----TGGG-CGGA-GTCA-------A---------------GTTGGC---------GT--------------------CGCCG---------AACACC------TGCGCA----------ATTTTTTTGT----CCCAA-AT-TTTTAAATTTGTTT-TTTGTCAT-CTTTAATCGATAAAC---TGAC-A----------AT---T---------------AT-------------T----ATTGTAAAAAA---TA--------------G-------TAAT----ATTAATATTTTCATA-TA-------TA-TT------TCT--TT------ATTACATTAAACCCCATACAATTATCCCGTTCAATGGCAGGCGTAAAAATT-GTGGATTGAACAGAATTTAA---AT---ATTTGCACCAGTCTAGTTAATAAATAGAAGATTTCCTGTGTAACGATAGGTTTTGTTGTTTTCCAATTTAGAAGTTACAGAATACACATAAAATACAAAAAAGGGTTTATAAACTGTGTTTATTAAAAAGAAATCGTAAAATATAAAGCATTTAAGACATGTTTAAAACTTCCTGTGCTTTTTGCCCTACGTTCAATATGATAGTCGTCAGAAATATTGTTGTCGACTGGACTTT
gi|4 : tgctactataaaatggtgttaccgttataacttttatgtgtaagtgtatttgggtaagataaagggaaaataaaaacaaacttttaacatttttttaagtgcatctttctagaaatatctgggtcctaaaaaggaccatcaccgtctcactgtatctgcatcattcagcagtctctgatgtccgacttgAAAGTTAATTA----AGTCAACAATGATAAACTGGTATGGAAATTGTATTTTAATTTCAAATGCTATGTATATTTTGTTTATGGT-AGTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACT-ATCAAAACCCTTAAAATCATCTCCTTC-----------CAAGCAACGATAACACGTTCTAAACCCC-TGCTCACCAACAAGGTTCTGAA---CACCTACAT-ACATGTGTCACTATT--------GACACT---TGTCAAACGGTATTCATGCTTTTT--------AATTCAAGATCAAAG-------------TTTCAATT-AATAGAGTGATAATCCGACAGCAGTAAAAGACAAGGAAAGTACAAG----TGGG-CGGA-GTCA-------A---------------ATTAGC---------GT--------------------CGCCA---------AACACC------TGCACA----------ATTTTGTTCT----CCCAA-AG-TTTTAAATT---------GTTATATTTTAATCAATAAAC---CGAT-A----------ACAATC---------------AT-------------TCATTATCGT-AAAAG---AA--A-----A-----G-------CAAA----AC----ATAATTGTA-AA-A---A-AATAT----AATAT--AT------ATTACATTAAACACAATACAATTATCCCATTAAACGGCGAGCTTAAAAAATAGCGAATTTAACAGAATTTGA---AT---ATTTGCACCAGTCTAGTGAATAAATAGAAGACTTCCGGTTTAGCGAAAAGTTTTGTTGTTTTCCTATTTGGAAGTTACAGAATACACA-ATAATACCAAAAAGGGTTTATAAACTTTGTTTATT-AATTGAACTTATAAAATATTAAGCATGTAAGACTTGTTTAAAACTTTGTGTGCTTTTTGCACTACGTTCAAGATGATAGGCATCAGAAATACTGTTCTCGGCTGGCCTTT
gi|5 : -ATCAAAACCTTCAAAATCATCTCCTTCATTATCGCTGCCGAGCAAAGATAACACGTTCTAAACCCC-TTCTCACCAATGAGGTTCTGAA---CACCTACAT-ACACGTGTCACTATT--------GACACT---TGTCAAATGGTATTCACGCTTTTT--------AATTTAAGATCAAAGAGATGTCAATTAGTTTCAATT-AACAGAGTGATAATCCGACAGCAGTAAATGAAAACTAAAGTACAAG----TGGG-CAGA-GTAA-------A---------------ATTAGC---------AT--------------------CGCTG---------AACACG------TGCACA----------ATTTTGTTCT----CCCAA-AA-TTTTTAATTTTTTA-TGTGTTAT-----AATCAATAAAC---CGAT-A----------ATGATT---------------AT-------------TCATAATTGTAAAAGG---AA--------------G-------CAAA----AC----ATAGTTGTA-AA-A---AATA-GT----AATAT--AT------ATTACATTAAACACCATACAATTATCCCATTACATGGCAAGCATAAAAAATAGCGAATTTAACAGAATTTGA---AT---ATTTGCACCAGTCTTGTGAATAAATAGAAGACTTCCAGTTTAGCAAAAAGTTTTGTTGTTTTCCTGTTTGGAAGTTACAGAATACACA-ATAATACCAAAAAGGGTTCATAAACTTTGTTTATTAAATAGAAATCATAAAATATAAAGCATGTAAGACATGTTTAAAACTTTGTGTGCTTTTTGCACTACATTCAGGATGATAGGCATCAGAAATACTGCTGTCTACTGGCTT
gi|6 : tCAACGATAACACGTTATCAACCCC-TTCTCACCCACCAGGTTCTCAA---CACCTTCTC-AGACATGTCACTATT--------GCCACA---TGTCAAACGATATTCATACTCGTT--------AATTCAAGATCAAAGAGATGTCAATTAGTTTCAATT-AACAGAGTGATAATCTGACGGCAGGAAAGGACGTGGAAAGTACAAG----TGGG-CAGA-GTCA-------A---------------ATTG-----------GC--------G----------CCGCCG---------ATCACC------TGCACA----------ATTCTCTTGT----CCCAA-AT-TTTTAAATTCGTTT-TGTAATAT-TCTTAATCAATAAAC---TGAT-A----------ATAATT---------------AT-------------TCATTAGTGTTAAAAACTGAA--ATTCATA-----G-------TAATATCAAT----ATTTTCAT---T-T---A-TA-TT------TCT--TT------ATTACATTAAACCCCATACAATTATCCCGT---------------AAAAATAGTGAATTGAACAGGTGTTGAATTAT---ATTTGTACCAGTCTAGTTAATAAATTGATGACTTCCGGTTTAGCGAAAAGTTTTGTTGTTTTCCCATTTGGAAGTTACAGAATACACA-ATAATACATCAAAGGGTTTGTAAACTACGTTTATTTAATACAAATAATAAAATATAAAGCATGTTAGACATGTTTAAGACTTCATGTGCTTTTTGCACAACGTTCAGGATGATAGGCATCAGAAATACTGTTCTCGACTGGCCTTT
gi|7 : tctttactatttatcccca-AAACATGTCACTTTT--------GTCACT---TATCAAATGGTATTTG---------------------AAGATCAAAGAGATGTCAATTAGTTTCAATC-AACAGAGTGATAATCTGACAGCAGGGAAGGACGAG---------------TGGG-CGGA-GTCA-------ATTTTGTA--------ATTGGCTTGTAATTTACT-------G----------CCACTG---------GACACC------TGCACA----------ATTTTGTTAT----CCCAG-AT-TTTTAAATTTGTTT-TGTGTTAT-TTTTAATCAATAAACTTTCTATTC----------ATAATTGTAAAATAAATGGAAAT-------------TCATAATTGTAAAAAA---TATTA-----A-----GTGTACATCAAT----A------TTTTCATA-TA-------TA-TT------TCT--TT------ATTACGTTAAACACCACACAATTAACCCATTAAATGACGAGCATAAAAA-TAGTGAATTAAACAGAGTATGA---AT---ATTTGCACCAGTCTAGTTAATAAATAGAAGACTTCCGGTTTAAGGAAGAGTTTTGTTGTTTTCACATTTGGAAGTAACAGAATACACA-ATAATACCAAAAGTGGTTTATAAACTGTGTTTATTAAATTGAAATCATAAAATATAAAAAATGCAAGACATGTTTAAAACTTCCTGTTCTTATTGCACTACGTTCAAGATGATGGTCGTCAGAAATGCTGTTGTTGATTTGCCTTT
gi|8 : C-ATCAAAACCCTCAAAGCCATCTCCTTTGATGTCGCTTTCAAGCAAC---AAAACGTTCTCA--------CCCACCAGCTAGGTTCTCAA---CACCTACTC-AAACGTGTCACTATT--------GCCACT---TGTCAAACGGTATTCATACTCTCT--------AATTCAAGATCAATGAGATGTCAATTAGTTTCAATT-AACAGAGTGATAATCCGACAGCAGTAAAGGACAAGGAAAGTATAAG----TGGG-CGGT-GTCA-------A---------------ATTG-----------GC--------A----------CCACTG---------AACACC------TGCACA----------ATTTTGTTGT----CCCAA-TT-TTTTAAATTCGTTT-TGCGTTAT-TTTTAATCGATAAAC---TGAT-A----------ATAATT---------------AT-------------TCATATTTGT-AAAAA---CA--A-----T-----G-------AAAT----TC----ATAATTTTAGAA-A---A-TA-GT----AATATCAGT------ATT
gi|9 : aagtttaaaatggtgttaccataataatttttatgtgtatttgagtaagatataagggacaataaaaactattgaccattttttaagtacatctatcaagaaatatttggaacctaaaaaatgaccatctccctctcactgtatctccatcattcagctgtctctgatgtctgactCTT-AAACATGTTAGTATT--------GTCAAG---TATGGAAGGGAATTTGCGCTCTTT--------AATTGAAGATCAA-GAGAT--CAATTAGTTTCAATT-AGTGCACTTATAATCTCACAGCAGGAAAGGACAAGGGAG----AGG----TGGG-ttcatatatatatttctttattacattgaacacta
gi|9 : GAGGGGGGTGTAGGGGGATGGGTCGGA-GTCAGTTTTGTA---------------ATTGGCAT-------GCAATTAACAG----------CCGCCA---------AACATTGACAAATGCACATA--------ACTTTCTTTTTTGTCATAG-AG-TTTTAAATTTGTTTATGTAA-AT-TTTCAATCCATAAAC---TGTT-G----------TT--TT---------------TT-------------TCATAGCTATAAAAAA---AA-------------------------------------TCTT-----------------AC----AATAT-----------TTACAT--------ATATA--TAT----TTAA-TGACAACCATAAAAA-TAGTGAATTGATCAGGATTTAA---AT---ATTTGTACCAGTCTAGTTAgtgggttagtgttagtggtggaggggggtgtagggggatgggtcggagtcagttttgtaattggcatgcaattaacagccgccaaacattgacaaatgcacataactttcttttttgtcatagagttttaaatttgtttatgtaaattttcaatccataaactgttgtttttttcatagctataaaaaaaatcttacaatatttacatatatatatttaatgacaaccataaaaatagtgaattgatcaggatttaaatatttgtaccagtctagttatacacattatattatagacttgcagtgta
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTTGCGAATATATAAAGTGTTAAATGATTTATTTATTAAATGTGTGTTTGAATTTGGATACGGCTAAAGGGAAAATAAAAACAAACTATTGACAATTTTTTTAACACATCTTTCGAGATGTTTCTTCGGTCCTTAAAAGTCCCCTCACTCCTCTCTCCTTCAGCAATCTCGGGTGTCAGGCTTATCAAATCCTTCAAAATTATCTTCTT
Unaligned ( gi|16 ): TTTGCAAGTATAAAATGGTGGTACCATTTATTTACGTGTATTTGGGTAAGACAAAAGGGAAAATAAAAACAAACAATTGACAATTGTTTAAGTACATCTTTCGAGCAGTATTTGGGTCCTAAAAAGTACCACCACCCTCTTACTGTCCAATC
Unaligned ( gi|18 ): TTTGCAAATATATAATGGTGTTAATTATTGTATTTATTAATATGTGTGTGTAAACGGGTAAGACAAAAGGGAAAATAAAAACAAACTATTAACG
Unaligned ( gi|19 ): TAAGTGTATCTTTCGAGAAATATTTGGGTCCTAAAAGGACCCTCACTCCTCACTGTATCTACATCCTTTGGCAATCT