lowQualScore : 33333333333333333333 11111 333333333333333333333333333333 11111111111111
lowQualScore : 1 1 1 1 11 22222222 11 9999999999999999999999999 1 2222222222 1 66666666666666666666666666666666666666666666666 22222 00000000000000000000 4 4 00000 4 111111111111111111111111111111 1 1 1 77777777777777 1 11 555555555555555555555555 2 4444444444444444 333333333 1111 1 666666666666666 2222 333 1 4 1 55555 1 22 1 22 222 2222 4444 1 2 11 1 11 44444444 11 222 11 11 1 1 11 1111 11 11 1
lowQualScore : 5 5 3 2 88 4 4 5 5 6 22 33333333 00 2222222222222222222222222 8 0 2 8888888888 88 5 8 0 3 3 0 1 6 22222222222222222222222222222222222222222222222 00000 6 6 11111111111111111111 0 6 6 6 0 6 6 00000 0 6 6 888888888888888888888888888888 6 6 6 5 5 5 44444444444444 55 2 88 999999999999999999999999 6 2222222222222222 0 2 222222222 0 66 4444 2 2 3 6 222222222222222 6 4 2 2 4 4444 3 555 5 0 3 6 5 33333 7 77 5 77 111 3 4 4 6 2 3333 2222 2 5 0 2 8 88 3 88 88888888 6 22 333 44 88 3 3 66 0 1 2 7777 8 44 33 8 8 7 5
lowQualScore : . . . . .. . . . . . .. ........ .. ......................... . . . .......... .. . . . . . . . . ............................................... ..... . . .................... . . . . . . . ..... . . . .............................. . . . . . . .............. .. . .. ........................ . ................ . . ......... . .. .... . . . . ............... . . . . . .... . ... . . . . . ..... . .. . .. ... . . . . . .... .... . . . . . .. . .. ........ . .. ... .. .. . . .. . . . .... . .. .. . . . .
lowQualScore : 0 0 0 5 00 0 0 0 0 0 55 88888888 00 2222222222222222222222222 0 4 2 0000000000 22 4 0 8 8 2 8 0 0 44444444444444444444444444444444444444444444444 55555 0 0 00000000000000000000 0 0 0 0 0 0 0 00000 0 0 0 000000000000000000000000000000 0 0 0 0 0 0 55555555555555 55 3 33 222222222222222222222222 7 8888888888888888 8 0 888888888 2 00 5555 2 0 3 0 000000000000000 0 0 5 5 0 5555 0 000 0 0 0 0 0 00000 0 55 5 55 000 0 0 0 0 5 0000 5555 5 0 0 5 3 33 3 33 33333333 7 77 333 00 33 3 3 77 2 0 2 0000 0 22 00 0 0 0 0
consensus : AAGCCACGTGGCAATTTTAATGTGTACACAGACTACAGANTNTTAACNNAATGTATCANTNTCACGACAGCCATCGAGGTTTACAAATGTACTAATTATAAAACATTGGTTACAATTAAAACATCTAGATGTTAAACATCAGATGCTGCTGGTTATTTAAATTATCTTG-CGCCTGTTTCACCAACATATACTTAAA-----ANNATTCATTAANATCTTAGAAAAGCAGCCAGGTGATCATGA--TTNNCGACCGGTTCCAGTAAA-ACTGCATATNGTTTTACTGACGTTAATTNTA-AANTAGATAAATAACCAGTCAAAAC----TAAGGTTTTTAAGTAGTTTAGGTGAAATGCTTTTGTTTTTTGTTTTTTGTTTTCATTTTATTACCCACATCTTATCAAAGTTTACAACACCCCCAAACACCTCATATCCCTCTCCGCATAGTTCGAGTTTCGTCTATGGGTCTTTCGTTGACACAA-----CAGCATATAAAAAA-TTGATTAAATCAATTTTAATACAGAAAAAATGACAGAATGAGAAATAATAAAATAAGTGTGTATGGGGGTGAGAGGGGTGTGTGTGTGTGTGTGTGGGGGGGGGGGGGGGGGGCTCAATTATCACATGCACGTATAGACTTTACACATACCATGCACGTGTGTAGGCCTGTGTAAACAAGATCGAGTGCCCGCAAACTTTTGGGAAAGGAAACCTTCGACAATACGTTCGGGCATATCCACA---------CAATATNNGTTTACATGGGCG--GATTCAAGGG--GGGCTGGG-CGCCCCA-CCCGCAAAAATCTCCCGGACATATNN--GTANT-------TGTCAATAACAACTGTGT----ATT--AGGAGAATACAATGGTCTGAAACAA-ATATAGCATAGTAACAATGTTCATAAGTATATGGGAAATTCGCAGTATCTATCATGGCAATATGTATTTACATGNCCGANTCAAGGGACGNAAATCAGTGAACTTTTCGTCANTCTTTGCTATTTTATTTCATGCTGTTGTTTTTTCCC-AATCATATTCCCTNATTAAAGTTCTGTCTGAAATTCATAACAAAACGTTCGTAAAATAAATGTCAAACAAAAAGATTAAATCAGTGAACCATTTCGTCAGTCTTGATTNCTANTTTNTTTCGNGNAGGTGTTGCTTTTTCTCAATCATATTCNCTGATTGCAAGTTCTGTCATCATAACAAAATGCATGAANTTAACCAA--ACTTT-TCAG--ATAA--------AAAAAATNCA---CATAAAAA-AAT--AGTAAA-AACG-GAAAGCAAATCTGTGTGTATGCACAGTTACTTTGCTATACATAC----GAATAT-ATN-TG-TGGAAA-A-TGTCATTCGTGTAAAATTGAATT
Reference ( gi|2 ) : AAGCCACGTGTCAATTTTACTGTGTACACAGACTACAGAATCTTAACTTAATGTATCAATTTCACGACAACCATCGAAGTTTACAAATGTACTCATTATAAAACATTGGTTACAATTAAAACATCTCGATGTTAAACATCAGATGCTGCTAGTTATTTAAATTATCTTG-CTCCTCTTTCACCAACATATGCTTAAA-----AAGACCCACTAAAATCTTAGAAAAGCAGCCAGGTGAGCATGA--TTGACGACTGGTTCCAGTAAA-ACTGCACATAGCTTCATTGATTTTGATTTTA-AACTAGATTAAAAACCAGATAAAAT----TAAG----TTAAGTA-TTTAGGTGAAGTGTTTTTCT------------------ATTTTATTACCCACATCTTATCAAAGTTTACAACACCCC-AAACACCTCATATCCCTCCCCACATAGCT-GAGTTTCGTCTATGGGCCTTCCGTTGACACAAAAAAACAGCATATAAAAAAGTTGATTAAATCAATTTTAATACAGAAGAAATGACAGAATGAGAAATAATAAAATAAGTGTGTGTG----TTGGAGGGG-----------------GGGAGGGGGGGGGGGGGGCTCAATTATCACGTGCACGTATAAACTTTACACATACCATGCACGTGTGTACGCCTGTGTAAACAAGATCGAGTGCACGCAAACTTTTGGGAAAGTAAACCTTCGACAATACGTTCGGGCATATCCACACAGCTTTTTCAATATTGGTTTACATAGGCG--GATTCAAGGGTCGGGCTTGG-TGCCCCAACCCGTAAAAATCTCC-GGACATATCA--GTAAT-------TGTTAACAACAACTGTGT----ATT--AGGAGAATACAACGGTTTGAGACAA-ATGTAGCATAGTAACAATGTTCATAAGTATATGGAAAATTCGCAGTATCTATCGTGGCAATATGTATTTGCATGACCAAGTCAAAGGACGAAAATCAGTGAACTTTTCGTCATTCTTTGCTATTTTATTTT---CTGTTGTTTTTTCCCAAATCATATTCCCTTATTAAAGTTCTGTCTGAAATTCATAACAAAACGTCCCTAAAATAAATGT-AAA-AAAAAGATAAAATCAA--AACCATTTCA--AGTCTTGATTTTTATTTTTTTCCAGGGAGGTGTTGCTTTT----AATCATATTCGCTGATTGCAAG-TCTGTCATCATAACAAAATGCATGAAGTAAACCAA--ACTTT-TCAG--ATAA--------ACAAAACGCA---CATAAAAG-AAT--AGTAAA-AATG-GAAAGCTTATCTGTGTGTATGCACAGTTACTTTGTTATACATAC----GAATAT-ATT-TG-GGGAAA-A-TATCTTTCGTGTAAAATTGAATT
gi|1 : AAGCCACGTGGCAATTTTAATGTGTACACAGACTACAGAATCTTAACTTAATGTATCAATTTCACGACAGCCATCGAAGTTTACAAATGTACTAATTATAAAACATTGGTTACAATTAAAACATCTAGATGTTAAACATCAGATGCTGCTGGTTATTTAAGTTATCTTG-CACCTGTTTCACCAACATTNNNNNNNN-----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNN----NAAG----T-AAATAGTTTAGGTGAAATGCTTTTGTTTTTTGTTTTTTGTTTTCATTTTATTACCCACATCTTATCAAAGTTTACAACACCCCCAAACACCTCATATCCCTCTCCGCATAGTTCGAGTTTCGTCTATGGGTCTTTCGTTGACACAA-----CAGCATATAAAAAA-TTGATTAAATCAATTTTAATACAGAAAAAATGACAGAATGAGAAATAATAAAATAAGTGTGTATGGGGGTGAGAGGGGTGTGTGTGTGTGTGTGTGGGGGGGGGGGGGGGGGGCTCAATTATCACATGCACGTATAGACTTTACACATACCATGCACGTGTGTAGGCCTGTGTAAACAAGATCGAGTGCCCGCAAACTTTTGGGAAAGGAAACCTTCGACAATACGTTCGGGCATATCCACA--------------TTGGTTTACATAGGCG--GATTCAAGGG--------GG-CGC---AACCCGCAAAAATCTCC-GGACATATAG--GTACT-------TGTTAACAACAACTGTGT----ATT--AGGAGAATACAATGGTTTGAGACAA-ATATAGCATAGTAACAATGTTCATAAGTATATGGAAAATTCGCA---------------ATATGTATTTACATGACCAAGTCAAAGGACGAAAATCAGTGAAC----CGTCATTCTTTGCTATTTTATTTT---CTGTT-TTTTTTCCC-AATCATATTCCCTTATTAAAGTTCTGTCTGAAATTCATAACAAAACGTTCGTAAAATAAATGTCAAACAAAAAGATTAAATCAA--AACCATTTCA--AGTCTTGATTTTTAATTTTTTTCGGGGAGGTGTTGCTTTT----AATCATATTCGCTGATTGCAAG-TCTGTCATCATAACAAAATGCATGAAGTTAACCAA--ACTTT-TCAG--ATAA--------ACAAAAAGCA---CATAAAAG-AAT--AGTAAA-AATG-GAAAGCTTATCTGTGTGTATGCACAGTTACTTTGTTATACATAT----GAATAT-ATG-TG-GGGAAA-A-TATCATTCGTGTAAAATTGAAT
gi|18 : AAACCACGTGGCAATTTTAATATGTACACAGACTACAGACTGTTAACAAAATGTATCATTATCACGACAACCATCGAGGgaatgtataannnnnnnnnnnnnnnnnnnnnnnnnngtacatttcatatcattttattaacattccatcttcatgatttcattaagagag
gi|11 : ATTTGAA----CTCG-C-CCTGTGTCACCAACATATACTTAAATGCTTAAAA---ATTAAA-CCTTTGAAAAACAGCCAGCTGGTCATAAAATTAA-GACCGGTTCCA-TAAATACTGCATATGGTTTCACTGGTGTTAATTATA-TAATAGAT
gi|16 : TCAAAT-ATTTTGGCTCTTGATTCACCAGTATATACTTAAA-----A-----CA--AGGAT-------AAGCAGCCAGGTGATCA------TGACAA---GTTCTAGTAAA-a
gi|10 : TAGATTATCCTG-TGGCAGCTTAACCAACATATA--TAAA-----TCTATTC-TTAACTTCTTAAAAATGCTTCTAAATGACCATGA--TCATTGACTGGTTCTGATACA-GTTACACATAGTTTTACTTACATTAA--TTACAACTTGGT----AACCAG-TAAAAT----
gi|9 : ATCTAAGAAA-GCAGCCAGGTGATCATGC--TTTTAGACAGGTTCCAGTAAA-ACTGTATATTG-TTTATTGATTATA----TA-A--TAAATAAATAACCAGTCAAAACTTAGTAAGGTTTTTAAGTA-TT--GGTGAA
gi|6 : cttaccaacttctCAATATGTATTTACAT-GTCG--GATTCAAGGGACGacagaagccaggt
gi|15 : ctgttaataacaattgtgtaatagtctgaaacaagatatagtatagtaacactgttcataagtatatgggaaatttgcagtatctatcatggATGGGCGTGGATTCAATGG--GGGCTGGGGTGCCCC----CGTACACCTCTCCCAAATCTATCT--GTCATAGGTTACTGCCAATAACAACTGTATATTAATT--AAGACAATACAGTGACCTGAAACtaaatcagtgaacttttcgtcagtctttgctattttatttcatgttgttgttttttctcaatcatattccctgattaaagttctgtctgaa
gi|14 : tGCTGAA-TGCCCCA-CCT---AAAATCTTCTGGCCATTTTAAGGTATC-------TGGCAGTAACTACTCTAT----TTTTTAGGAGTCTACCATGGTCTGAAACAA-AAATATCATTGTAATAATGTACAGAAATA
gi|6 : -------TGTTAATAACAATTGTGT----A----------ATA-----GTCTGAAACAAGATATAGTATAGTAACACTGTTCATAAGTATATGGGAAATTTGCAGTATCTATCATGGCAATATGTATTTACATGTCGGATTCAAGGGACGTAAATCAGTGAACTTTTCGTCAGTCTTTGCTATTTTATTTCATGTTGTTGTTTTTTCTC-AATCATATTCCCTGATTAAAGTTCTGTCTGAA
gi|6 : cAAATCAGTGAACT-TTTCGTCAGTCTT---TGCTATTTTATTTCATGT---TGTTGTTTTTTCTCAATCATATTCCCTGATTA-AAGTTCTGTC
gi|3 : ctgttaataacaattgtgtaatagtctgaaacaagatatagtatagtaacactgttcataagtatatgggaaatttgcagtatctatcatggcaatatgtatttacatgtcggattcaagggacgtAAAATGCATGAATTTAACGAA--ACTTT-TAAG--ATAAGAATTTTAAAAAAATCCAGCTTATAAATA-AAT--AGCAAA-AATG-GAAAGTAAATCTGTTTTCATACATAGTTACTTTGCTATACATAT----GAATAT-ATT-TG-TGAAAA-ATTGTCATTC-TGTAATATTGtgaa
gi|12 : AAACCAACTACATTATCACCTACAG--------AAAAAATACA---CATAAAAACAATCCAGTAAATAACGAGATAGCAAATCTATGTGTATCCACATACACATCGATATGCATAC----GAAAGT-ATA-TG-TGGAAA-A-TATTATTCTTGTAttagctctatagcaagactatctagatattccggcatgcttgataaaaaaaactactcccgcccagagagatccagaggatattaaagataatcagtaaccaacacacacaactttgtatcttattaaattccaggatttataatagattacattagccctccaaaacaatataattcgtgtaaaattgaattaatgtagaactcaaaccccc
gi|13 : GTATGCACAGTTACTTTTCTATATATACCCATGAATATAATTATGTGTGAAATA-TGTCACTCGTGTAAAATTGAATTtataaa
gi|4 : taaatattattattattattattattaACAGTTACGTTTTTATACCTAT----GAATGT-ATA-TG-TGAAAA-A-TGTTATTCGTGTGAAATTGAATTaatgtatgacttacatgtaata
8 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|5 ): ATATGTTATATATATTTAACTTGTCTGTTATATAACATTTTGTTAAGATTACNNNNNNNNNNATATATATATATATGTATATTCCAGCATGATTAATAAAAAAACTGCTTCTGCCCAGAGAGAGCCAGAGAATAAAATAATCAGTAAACAACACACAAGATTTTGTATCTTGTTTAAATCCAGGATTTTTAATAGATTACAAAAGTCATCCAAACAATACA
Unaligned ( gi|7 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAATATCCTTAATGGAGAGAATATATAAGACCAGATTAATAACATTTTAGACGTGTAATACCTATATTTGTATGAATCCATATTAATCAAGATCTATATGATAAAAAATCATCCCAACTTCAAATGAAATAAAATTCTGGCAAAATATTGATTTGAACAAAAACTTCTA
Unaligned ( gi|8 ): TAATTTGTTAGCAAATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCAGCATGCTTGATAAAAAAACTACTTACGCTTAGAGAGAGCCGGAGAATAAAAAAATCAGTAACCAACACACAAGGCTTTGTATTTTATTAAATTCCAGGATTTATAATAGATTACAAAAGCCACCCAAAACAATA
Unaligned ( gi|17 ): TAACAACTTTAATCTTAATGAAGTTTCAAGGTGATAATGTTGTTAGACAGGATCTATTGCAAGTGCATATTATATTATAAAT
Unaligned ( gi|19 ): ACATAATAAATAAACAACCAATCAAAATTTAGTTAAGTTTTAAGTATTAAAGTAAAATGTTGCTGAAATAGAAGACAGA
Unaligned ( gi|20 ): GTTATTTTTATACTGATTATAAATAAATAAATAATCAGTCTAAATTAAGTTTTAAATTGTTGGTGAAACATAAGCCAAG
Unaligned ( gi|21 ): CAGTCAAAACTTAATTAAGTTTTAAGTATTTCAGTAAATTTGGTGAAACAGATGCCTGGT
Unaligned ( gi|22 ): TATATACATAAACAAATAACCAATCAAAATTGAGTTAAATGTTGATGAAACAGAAACCA
Alignments
lowQualScore : 11111111111111
lowQualScore : 111 6666666666666666666 2222222 11 22222 33 1 11 666666666666666666 1 1 55555 2 2222 55555555555555555 00000000000000 11 222 11 11 1111 2222222 222222222 1 3333 1 1 1 666 666 8888 4 11 1 11 33333333 111 1 11 1 1 1111
lowQualScore : 1 1 22 1 1 0 0 3 3 66 444 2 0000000000000000000 1 6 6666666 6 3 8 1 6 77 1 1 1 8 0 1 0 99999 00 5 88 2 555555555555555555 5 5 00000 0 2222 2 99999999999999999 2 2 2 77777777777777 22 0 88 555 22 2 33 66 6 6 5555 1 6666666 000000000 11 0 0 0 6 4 1 0 1 0 1 7 1 8888 6 3 1 2 5 5 4 111 111 77 1 1 1 1 5555 1 0 1 33 0 33 66666666 3 22 777 0 33 0 2 0 88 2 4444 99 1 6 6 6 2
lowQualScore : . . .. . . . . . . .. ... . ................... . . ....... . . . . . .. . . . . . . . ..... .. . .. . .................. . . ..... . .... . ................. . . . .............. .. . .. ... .. . .. .. . . .... . ....... ......... .. . . . . . . . . . . . . .... . . . . . . . ... ... .. . . . . .... . . . .. . .. ........ . .. ... . .. . . . .. . .... .. . . . . .
lowQualScore : 0 0 00 0 0 7 7 0 0 44 444 5 2222222222222222222 0 0 4444444 4 2 0 0 8 88 8 0 4 8 8 0 2 00000 33 0 55 5 000000000000000000 0 0 00000 0 5555 5 55555555555555555 5 5 5 00000000000000 00 7 33 000 00 5 22 88 5 5 8888 0 0000000 888888888 66 6 0 7 7 0 0 7 0 7 0 3 0 0000 7 3 0 5 0 0 0 000 000 00 0 0 0 0 0000 0 0 0 88 0 88 22222222 0 22 555 0 88 0 0 0 00 2 2222 22 0 7 7 7 5
consensus : AAGCCACGTGGCAATTTTAATGTGTACACAGACTACAGAATCTTAACTTAATGTATCAATTTCACGACAACCATCGAAGTTTACAAATGTACTNATTATAAAACATTGGTTACAATTAAAACATCTNGATGTTAAACATCAGATGCTGCTGGTTATTTAAATTATCTTG-CNCCTGTTTCACCAACATATACTTAAA-----ACGACCCATTAA-ATCTTAGAAAAGCAGCCAGGTGATCATGA--TTANCGACCGGTTCCAGTAAA-ACTGCATATNGTTTCACTGACGTTGATTATAAANTAGATAAATAACCAGTCAAAAT----TAAG--TTTTAAGTAGTTTAGGTGAAATGCTTTTNTTTTTTGTTTTTTGTTTTCATTTTATTACCCACATCTTATCAAAGTTTACAACACCCCCAAACACCTCATATCCCTCCCCGCATAGCTCGAGTTTCGTCTATGGGCCTTCCGTTGACACAAAAAAACAGCATATAAAAAAGTTGATTAAATCAATTTTAATACAGAAGAAATGACAGAATGAGAAATAATAAAATAAGTGTGTGTGGGGGTNGGAGGGGTGTGTGTGTGTGTGTGTGGGGGGGGGGGGGGGGGGCTCAATTATCACGTGCACGTATAGACTTTACACATACCATGCACGTGTGTANGCCTGTGTAAACAAGATCGAGTGCNCGCAAACTTTTGGGAAAGNAAACCTTCGACAATACGTTCGGGCATATCCACACAGCTTTTTCAATATTGGTTTACATAGGCG--GATTCAAGGG--GGGCTGGG-TGCCCCA-CCCGTAAAAATCTCCCGGACATATCG--GTANT-------TGTTAATAACAACTGTGT----ATT--AGGAGAATACAATGGTCTGAAACAA-ATATAGCATAGTAACAATGTTCATAAGTATATGGAAAATTCGCAGTATCTATCGTGGCAATATGTATTTACATGACCGAGTCAAAGGACGAAAATCAGTGAACTTTTCGTCATTCTTTGCTATTTTATTTT---CTGTTGTTTTTTCCC-AATCATATTCCCTTATTAAAGTTCTGTCTGAAATTCATAACAAAACGTCCNTAAAATAAATGTCAAACAAAAAGATNAAATCA--AAACCATTTCA--AGTCTTGATTTTTANTTTTTTCCGGGGAGGTGTTGCTTTT----AATCATATTCGCTGATTGCAAG-TCTGTCATCATAACAAAATGCATGAAGTTAACCAA--ACTTT-TCAG--ATAA--------ANAAAACGCA---CATAAAAG-AAT--AGTAAA-AATG-GAAAGCNNATCTGTGTGTATGCACAGTTACTTTGTTATACATAC----GAATATA--TNTGTG-GAAA-A-TGTCATTCGTGTAAAATTGAATT
Reference ( family-1778 ) : AAGCCACGTGGCAATTTTAATGTGTACACAGACTACAGANTNTTAACNNAATGTATCANTNTCACGACAGCCATCGAGGTTTACAAATGTACTAATTATAAAACATTGGTTACAATTAAAACATCTAGATGTTAAACATCAGATGCTGCTGGTTATTTAAATTATCTTG-CGCCTGTTTCACCAACATATACTTAAA-----ANNATTCATTAANATCTTAGAAAAGCAGCCAGGTGATCATGA--TTNNCGACCGGTTCCAGTAAA-ACTGCATATNGTTTTACTGACGTTAATTNTAAANTAGATAAATAACCAGTCAAAAC----TAAGGTTTTTAAGTAGTTTAGGTGAAATGCTTTTGTTTTTTGTTTTTTGTTTTCATTTTATTACCCACATCTTATCAAAGTTTACAACACCCCCAAACACCTCATATCCCTCTCCGCATAGTTCGAGTTTCGTCTATGGGTCTTTCGTTGACACAA-----CAGCATATAAAAAA-TTGATTAAATCAATTTTAATACAGAAAAAATGACAGAATGAGAAATAATAAAATAAGTGTGTATGGGGGTGAGAGGGGTGTGTGTGTGTGTGTGTGGGGGGGGGGGGGGGGGGCTCAATTATCACATGCACGTATAGACTTTACACATACCATGCACGTGTGTAGGCCTGTGTAAACAAGATCGAGTGCCCGCAAACTTTTGGGAAAGGAAACCTTCGACAATACGTTCGGGCATATCCACACA---------ATATNNGTTTACATGGGCG--GATTCAAGGG--GGGCTGGG-CGCCCCA-CCCGCAAAAATCTCCCGGACATATNN--GTANT-------TGTCAATAACAACTGTGT----ATT--AGGAGAATACAATGGTCTGAAACAA-ATATAGCATAGTAACAATGTTCATAAGTATATGGGAAATTCGCAGTATCTATCATGGCAATATGTATTTACATGNCCGANTCAAGGGACGNAAATCAGTGAACTTTTCGTCANTCTTTGCTATTTTATTTCATGCTGTTGTTTTTTCCC-AATCATATTCCCTNATTAAAGTTCTGTCTGAAATTCATAACAAAACGTTCGTAAAATAAATGTCAAACAAAAAGATTAAATCAGTGAACCATTTCGTCAGTCTTGATTNCTANTTTNTTTCGNGNAGGTGTTGCTTTTTCTCAATCATATTCNCTGATTGCAAGTTCTGTCATCATAACAAAATGCATGAANTTAACCAA--ACTTT-TCAG--ATAA--------AAAAAATNCA---CATAAAAA-AAT--AGTAAA-AACG-GAAAGCAAATCTGTGTGTATGCACAGTTACTTTGCTATACATAC----GAATATA--TNTGTG-GAAA-A-TGTCATTCGTGTAAAATTGAATT
gi|1 : AAGCCACGTGGCAATTTTAATGTGTACACAGACTACAGAATCTTAACTTAATGTATCAATTTCACGACAGCCATCGAAGTTTACAAATGTACTAATTATAAAACATTGGTTACAATTAAAACATCTAGATGTTAAACATCAGATGCTGCTGGTTATTTAAGTTATCTTG-CACCTGTTTCACCAACAT
gi|1 : TAAATAGTTTAGGTGAAATGCTTTTGTTTTTTGTTTTTTGTTTTCATTTTATTACCCACATCTTATCAAAGTTTACAACACCCCCAAACACCTCATATCCCTCTCCGCATAGTTCGAGTTTCGTCTATGGGTCTTTCGTTGACACAA-----CAGCATATAAAAAA-TTGATTAAATCAATTTTAATACAGAAAAAATGACAGAATGAGAAATAATAAAATAAGTGTGTATGGGGGTGAGAGGGGTGTGTGTGTGTGTGTGTGGGGGGGGGGGGGGGGGGCTCAATTATCACATGCACGTATAGACTTTACACATACCATGCACGTGTGTAGGCCTGTGTAAACAAGATCGAGTGCCCGCAAACTTTTGGGAAAGGAAACCTTCGACAATACGTTCGGGCATATCCAC--------------ATTGGTTTACATAGGCG--GATTCAAGG--------GGG-CG--CAA-CCCGCAAAAATCT-CCGGACATATAG--GTACT-------TGTTAACAACAACTGTGT----ATT--AGGAGAATACAATGGTTTGAGACAA-ATATAGCATAGTAACAATGTTCATAAGTATATGGAAAATTC---------------GCAATATGTATTTACATGACCAAGTCAAAGGACGAAAATCAGTGAAC----CGTCATTCTTTGCTATTTTATTTT---CTGTT-TTTTTTCCC-AATCATATTCCCTTATTAAAGTTCTGTCTGAAATTCATAACAAAACGTTCGTAAAATAAATGTCAAACAAAAAGATTAAATCA--AAACCATTTCA--AGTCTTGATTTTTAATTTTTTTCGGGGAGGTGTTGCTTTT----AATCATATTCGCTGATTGCAAG-TCTGTCATCATAACAAAATGCATGAAGTTAACCAA--ACTTT-TCAG--ATAA--------ACAAAAAGCA---CATAAAAG-AAT--AGTAAA-AATG-GAAAGCTTATCTGTGTGTATGCACAGTTACTTTGTTATACATAT----GAATATA--TGTGGG-GAAA-A-TATCATTCGTGTAAAATTGAATtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagtaaatagtttaggtgaaatgcttttgttttttgttttttgttttcattttattacccacatcttatcaaagtttacaacacccccaaacacctcatatccctctccgcatagttcgagtttcgtctatgggtctttcgttgacacaacagcatataaaaaattgattaaatcaattttaatacagaaaaaatgacagaatgagaaataataaaataagtgtgtatgggggtgagaggggtgtgtgtgtgtgtgtgtggggggggggggggggggctcaattatcacatgcacgtatagactttacacataccatgcacgtgtgtaggcctgtgtaaacaagatcgagtgcccgcaaacttttgggaaaggaaaccttcgacaatacgttcgggcatatccacattggtttacataggcggattcaagggggcgcaacccgcaaaaatctccggacatataggtacttgttaacaacaactgtgtattaggagaatacaatggtttgagacaaatatagcatagtaacaatgttcataagtatatggaaaattcgcaatatgtatttacatgaccaagtcaaaggacgaaaatcagtgaaccgtcattctttgctattttattttctgttttttttcccaatcatattcccttattaaagttctgtctgaaattcataacaaaacgttcgtaaaataaatgtcaaacaaaaagattaaatcaaaaccatttcaagtcttgatttttaatttttttcggggaggtgttgcttttaatcatattcgctgattgcaagtctgtcatcataacaaaatgcatgaagttaaccaaacttttcagataaacaaaaagcacataaaagaatagtaaaaatggaaagcttatctgtgtgtatgcacagttactttgttatacatatgaatatatgtggggaaaatatcattcgtgtaaaattgaatgaatgtataannnnnnnnnnnnnnnnnnnnnnnnnngtacatttcatatcattttattaacattccatcttcatgatttcattaagagag
gi|10 : aagccacgtggcaattttaatgtgtacacagactacagaatcttaacttaatgtatcaatttcacgacagccatcgaagtttacaaatgtactaattataaaacattggttacaattaaaacatctagatgttaaacatcagatgctgctggttatttaagttatcttgcacctgtttcaccaacattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagTAGATTATCCTG-TGGCAGCTTAACCAACATATA--TAAA-----TCTATTC-TTAACTTCTTAAAAATGCTTCTAAATGACCATGA--TCATTGACTGGTTCTGATACA-GTTACACATAGTTTTACTTACATTAATTACAACTTGG-----TAACCAGTAAAAgaatgtataannnnnnnnnnnnnnnnnnnnnnnnnngtacatttcatatcattttattaacattccatcttcatgatttcattaagagag
gi|11 : ATTTGAA----CTCG-C-CCTGTGTCACCAACATATACTTAAATGCTTAAAA---ATTAA-ACCTTTGAAAAACAGCCAGCTGGTCATAAAATTAA-GACCGGTTCCA-TAAATACTGCATATGGTTTCACTGGTGTTAATTATATAATAGATAt
gi|12 : AACCAACTACATTATCACCTACAG--------AAAAAATACA---CATAAAAACAATCCAGTAAATAACGAGATAGCAAATCTATGTGTATCCACATACACATCGATATGCATAC----GAAAGTA--TATGTG-GAAA-A-TATTATTCTTGTA
gi|13 : aGTATGCACAGTTACTTTTCTATATATACCCATGAATATAATTATGTGTGAAATA-TGTCACTCGTGTAAAATTGAATTtataaa
gi|14 : taaatattattattattattattattaGCTGAA-TGCCCCA-CCT---AAAATCTTCTGGCCATTTTAAGGTATC-------TGGCAGTAACTACTCTAT----TTTTTAGGAGTCTACCATGGTCTGAAACAA-AAATATCATTGTAATAATGTACAGAAATAaatgtatgacttacatgtaata
gi|15 : ATGGGCGTGGATTCAATGG--GGGCTGGGGTGCCCC----CGTACACCTCTCCCAAATCTATCT--GTCATAGGTTACTGCCAATAACAACTGTATATTAATT--AAGACAATACAGTGACCTGAAAC
gi|16 : tTCAAAT-ATTTTGGCTCTTGATTCACCAGTATATACTTAAA-----ACAA--------------GGATAAGCAGCCAGGTGATCATGA------CAA---GTTCTAGTAAA-
gi|18 : AAACCACGTGGCAATTTTAATATGTACACAGACTACAGACTGTTAACAAAATGTATCATTATCACGACAACCATCGAGG
gi|2 : AAGCCACGTGTCAATTTTACTGTGTACACAGACTACAGAATCTTAACTTAATGTATCAATTTCACGACAACCATCGAAGTTTACAAATGTACTCATTATAAAACATTGGTTACAATTAAAACATCTCGATGTTAAACATCAGATGCTGCTAGTTATTTAAATTATCTTG-CTCCTCTTTCACCAACATATGCTTAAA-----AAGACCCACTAAAATCTTAGAAAAGCAGCCAGGTGAGCATGA--TTGACGACTGGTTCCAGTAAA-ACTGCACATAGCTTCATTGATTTTGATTTTAAACTAGATTAAAAACCAGATAAAAT----TAAG----TTAAGTA-TTTAGGTGAAGTGTTTTTCT------------------ATTTTATTACCCACATCTTATCAAAGTTTACAACACCCC-AAACACCTCATATCCCTCCCCACATAGCT-GAGTTTCGTCTATGGGCCTTCCGTTGACACAAAAAAACAGCATATAAAAAAGTTGATTAAATCAATTTTAATACAGAAGAAATGACAGAATGAGAAATAATAAAATAAGTGTGTGTG----TTGGAGGGG-----------------GGGAGGGGGGGGGGGGGGCTCAATTATCACGTGCACGTATAAACTTTACACATACCATGCACGTGTGTACGCCTGTGTAAACAAGATCGAGTGCACGCAAACTTTTGGGAAAGTAAACCTTCGACAATACGTTCGGGCATATCCACACAGCTTTTTCAATATTGGTTTACATAGGCG--GATTCAAGGGTCGGGCTTGG-TGCCCCAACCCGTAAAAATCTCC-GGACATATCA--GTAAT-------TGTTAACAACAACTGTGT----ATT--AGGAGAATACAACGGTTTGAGACAA-ATGTAGCATAGTAACAATGTTCATAAGTATATGGAAAATTCGCAGTATCTATCGTGGCAATATGTATTTGCATGACCAAGTCAAAGGACGAAAATCAGTGAACTTTTCGTCATTCTTTGCTATTTTATTTT---CTGTTGTTTTTTCCCAAATCATATTCCCTTATTAAAGTTCTGTCTGAAATTCATAACAAAACGTCCCTAAAATAAATGT-AAA-AAAAAGATAAAATCA--AAACCATTTCA--AGTCTTGATTTTTATTTTTTTCCAGGGAGGTGTTGCTTTT----AATCATATTCGCTGATTGCAAG-TCTGTCATCATAACAAAATGCATGAAGTAAACCAA--ACTTT-TCAG--ATAA--------ACAAAACGCA---CATAAAAG-AAT--AGTAAA-AATG-GAAAGCTTATCTGTGTGTATGCACAGTTACTTTGTTATACATAC----GAATATA--TTTGGG-GAAA-A-TATCTTTCGTGTAAAATTGAATT
gi|20 : TATTTTTATACTGA------TTATAAA-TAAATAAATAATCAGTCTAAAT----TAAG--TTTTAAATTGTT--GGTGAAA
gi|3 : gtAAAATGCATGAATTTAACGAA--ACTTT-TAAG--ATAAGAATTTTAAAAAAATCCAGCTTATAAATA-AAT--AGCAAA-AATG-GAAAGTAAATCTGTTTTCATACATAGTTACTTTGCTATACATAT----GAATATA--TTTGTG-AAAA-ATTGTCATTC-TGTAATATTGcataagccaag
gi|4 : ACAGTTACGTTTTTATACCTAT----GAATGTA--TATGTG-AAAA-A-TGTTATTCGTGTGAAATTGAATTttagctctatagcaagactatctagatattccggcatgcttgataaaaaaaactactcccgcccagagagatccagaggatattaaagataatcagtaaccaacacacacaactttgtatcttattaaattccaggatttataatagattacattagccctccaaaacaatataattcgtgtaaaattgaattaatgtagaactcaaaccccc
gi|6 : tttcattgatagactacaagtaaatacaattttaaaataaacatctttatttttttgcttgata-------TGTTAATAACAATTGTGT----A---------------ATAGTCTGAAACAAGATATAGTATAGTAACACTGTTCATAAGTATATGGGAAATTTGCAGTATCTATCATGGCAATATGTATTTACATGTCGGATTCAAGGGACGTAAATCAGTGAACTTTTCGTCAGTCTTTGCTATTTTATTTCATGTTGTTGTTTTTTCTC-AATCATATTCCCTGATTAAAGTTCTGTCTGAAaatgtatagctcaatcttatatcgtctcttattcctctatctccttttctctctctttctctctatattgttgtgttaaaattccatgttcataatctctttaagaga
gi|9 : cATCTAAGAAA-GCAGCCAGGTGATCATGC--TTTTAGACAGGTTCCAGTAAA-ACTGTATATTGTTT-------ATTGATTATATAATAAATAAATAACCAGTCAAAACTTAGTAAGGTTTTTAAGTA-TT--GGTGAAA
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): ATATGTTATATATATTTAACTTGTCTGTTATATAACATTTTGTTAAGATTACNNNNNNNNNNATATATATATATATGTATATTCCAGCATGATTAATAAAAAAACTGCTTCTGCCCAGAGAGAGCCAGAGAATAAAATAATCAGTAAACAACACACAAGATTTTGTATCTTGTTTAAATCCAGGATTTTTAATAGATTACAAAAGTCATCCAAACAATACA
Unaligned ( gi|7 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAATATCCTTAATGGAGAGAATATATAAGACCAGATTAATAACATTTTAGACGTGTAATACCTATATTTGTATGAATCCATATTAATCAAGATCTATATGATAAAAAATCATCCCAACTTCAAATGAAATAAAATTCTGGCAAAATATTGATTTGAACAAAAACTTCTA
Unaligned ( gi|8 ): TAATTTGTTAGCAAATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCAGCATGCTTGATAAAAAAACTACTTACGCTTAGAGAGAGCCGGAGAATAAAAAAATCAGTAACCAACACACAAGGCTTTGTATTTTATTAAATTCCAGGATTTATAATAGATTACAAAAGCCACCCAAAACAATA
Unaligned ( gi|17 ): TAACAACTTTAATCTTAATGAAGTTTCAAGGTGATAATGTTGTTAGACAGGATCTATTGCAAGTGCATATTATATTATAAAT
Unaligned ( gi|19 ): ACATAATAAATAAACAACCAATCAAAATTTAGTTAAGTTTTAAGTATTAAAGTAAAATGTTGCTGAAATAGAAGACAGA
Unaligned ( gi|21 ): CAGTCAAAACTTAATTAAGTTTTAAGTATTTCAGTAAATTTGGTGAAACAGATGCCTGGT
Unaligned ( gi|22 ): TATATACATAAACAAATAACCAATCAAAATTGAGTTAAATGTTGATGAAACAGAAACCA
Alignments
lowQualScore : 66666666666666666666 2222222 11111111 4444444444 11 1 1 666666666666666666 1 1 22222 1 2222 55555555555555555 55555555555555 11 11 1111 11 44444444 222222222 1 222 1 1 1 11 1 11 33333333 111 1 11 1 1 1111
lowQualScore : 1 1 66 6 7 1 00000000000000000000 6 6666666 6 3 8 1 22222222 1 7 1 1111111111 11 0 9 4 0 1 555555555555555555 5 5 77777 5 2222 1 99999999999999999 1 1 1 22222222222222 88 88 6 3333 33 33 6 6 66666666 1 000000000 11 0 0 6 3 0 7 333 6 3 1 5 5 1 1 33 0 33 66666666 1 44 777 0 33 0 0 22 0 4444 99 1 6 6 6 2
lowQualScore : . . .. . . . .................... . ....... . . . . ........ . . . .......... .. . . . . . .................. . . ..... . .... . ................. . . . .............. .. .. . .... .. .. . . ........ . ......... .. . . . . . . ... . . . . . . . .. . .. ........ . .. ... . .. . . .. . .... .. . . . . .
lowQualScore : 0 0 44 7 5 7 88888888888888888888 0 6666666 4 2 0 0 55555555 4 5 0 0000000000 00 8 2 2 7 0 000000000000000000 0 0 55555 0 5555 0 55555555555555555 0 0 0 55555555555555 33 33 7 0000 22 22 5 5 55555555 0 888888888 66 6 0 7 7 7 3 333 7 3 0 0 0 0 0 88 0 88 22222222 0 55 555 0 88 0 0 00 3 2222 22 0 7 7 7 5
consensus : AAGCCACGTGGCAATTTTAATGTGTACACAGACTACAGAATCTTAACTTAATGTATCAATTTCACGACAACCATCGAAGTTTACAAATGTACTNATTATAAAACATTGGTTACAATTAAAACATCTNGATGTTAAACATCAGATGCTGCTGGTTATTTAAATTATCTTG-CTCCTGTTTCACCAACATATACTTAAA-----ACGACC-CACTAAA-TCTTAGAAAAGCAGCCAGGTGATCATGA--TTANCGACCGGTTCCAGTAAA-ACTGCACATAGTTTCACTGACGTTGATTATAAAATAGATAAATAACCAGTCAAAA-----T----TAAG--TTTTAAGTA-TT-AGGTGAAATGTTTTTNTTTTTTGTTTTTTGTTTTCATTTTATTACCCACATCTTATCAAAGTTTACAACACCCCCAAACACCTCATATCCCTCCCCGCATAGCTCGAGTTTCGTCTATGGGCCTTCCGTTGACACAAAAAAACAGCATATAAAAAAGTTGATTAAATCAATTTTAATACAGAAGAAATGACAGAATGAGAAATAATAAAATAAGTGTGTGTGGGGGTNGGAGGGGTGTGTGTGTGTGTGTGTGGGGGGGGGGGGGGGGGGCTCAATTATCACGTGCACGTATAGACTTTACACATACCATGCACGTGTGTANGCCTGTGTAAACAAGATCGAGTGCNCGCAAACTTTTGGGAAAGNAAACCTTCGACAATACGTTCGGGCATATCCACACAGCTTTTTCAATATTGGTTTACATAGGCG--GATTCAAGGG--GGGCTGGG-TGCCCCA-CCCGTAAAAATCTCCCGGACATATC-G-----GGTANCTGTTAATAACAACTGTGT----ATT--AGGAGAATACAATGGTCTGAAACAA-ATATAGCATAGTAACAATGTTCATAAGTATATGGAAAATTCGCAGTATCTATCGTGGCAATATGTATTTACATGACCGAGTCAAAGGACGAAAATCAGTGAACTTTTCGTCATTCTTTGCTATTTTATTTT---CTGTTGTTTTTTCCCAA-TCATATTCCCTTATTAAAGTTCTGTCTGAAATTCATAACAAAACGTCCNTAAAATAAATGTCAAACAAAAAGATNAAATCAAAACCATTTCAAGTCTTGATTTTTANTTTTTTCCGGGGAGGTGTTGCTTTTAATCATATTCGCTGATTGCAAGTCTGTCATCATAACAAAATGCATGAAGTTAACCAA--ACTTT-TCAG--ATAA--------ANAAAACGCA---CATAAAAG-AAT--AGTAAA-AATG-GAAAGCNNATCTGTGTGTATGCACAGTTACTTTGTTATACATAC----GAATATA--TNTGTG-GAAA-A-TGTCATTCGTGTAAAATTGAATT
Reference ( family-1778 ) : AAGCCACGTGGCAATTTTAATGTGTACACAGACTACAGAATCTTAACTTAATGTATCAATTTCACGACAACCATCGAAGTTTACAAATGTACTNATTATAAAACATTGGTTACAATTAAAACATCTNGATGTTAAACATCAGATGCTGCTGGTTATTTAAATTATCTTG-CNCCTGTTTCACCAACATATACTTAAA-----ACGACC-CATTAAA-TCTTAGAAAAGCAGCCAGGTGATCATGA--TTANCGACCGGTTCCAGTAAA-ACTGCATATNGTTTCACTGACGTTGATTATAAANTAGATAAATAACCAGTCAAAA-----T----TAAG--TTTTAAGTAGTTTAGGTGAAATGCTTTTNTTTTTTGTTTTTTGTTTTCATTTTATTACCCACATCTTATCAAAGTTTACAACACCCCCAAACACCTCATATCCCTCCCCGCATAGCTCGAGTTTCGTCTATGGGCCTTCCGTTGACACAAAAAAACAGCATATAAAAAAGTTGATTAAATCAATTTTAATACAGAAGAAATGACAGAATGAGAAATAATAAAATAAGTGTGTGTGGGGGTNGGAGGGGTGTGTGTGTGTGTGTGTGGGGGGGGGGGGGGGGGGCTCAATTATCACGTGCACGTATAGACTTTACACATACCATGCACGTGTGTANGCCTGTGTAAACAAGATCGAGTGCNCGCAAACTTTTGGGAAAGNAAACCTTCGACAATACGTTCGGGCATATCCACACAGCTTTTTCAATATTGGTTTACATAGGCG--GATTCAAGGG--GGGCTGGG-TGCCCCA-CCCGTAAAAATCTCCCGGACATATC-------GGTANTTGTTAATAACAACTGTGT----ATT--AGGAGAATACAATGGTCTGAAACAA-ATATAGCATAGTAACAATGTTCATAAGTATATGGAAAATTCGCAGTATCTATCGTGGCAATATGTATTTACATGACCGAGTCAAAGGACGAAAATCAGTGAACTTTTCGTCATTCTTTGCTATTTTATTTT---CTGTTGTTTTTTCCCAA-TCATATTCCCTTATTAAAGTTCTGTCTGAAATTCATAACAAAACGTCCNTAAAATAAATGTCAAACAAAAAGATNAAATCAAAACCATTTCAAGTCTTGATTTTTANTTTTTTCCGGGGAGGTGTTGCTTTTAATCATATTCGCTGATTGCAAGTCTGTCATCATAACAAAATGCATGAAGTTAACCAA--ACTTT-TCAG--ATAA--------ANAAAACGCA---CATAAAAG-AAT--AGTAAA-AATG-GAAAGCNNATCTGTGTGTATGCACAGTTACTTTGTTATACATAC----GAATATA--TNTGTG-GAAA-A-TGTCATTCGTGTAAAATTGAATT
gi|1 : AAGCCACGTGGCAATTTTAATGTGTACACAGACTACAGAATCTTAACTTAATGTATCAATTTCACGACAGCCATCGAAGTTTACAAATGTACTAATTATAAAACATTGGTTACAATTAAAACATCTAGATGTTAAACATCAGATGCTGCTGGTTATTTAAGTTATCTTG-CACCTGTTTCACCAACAT
gi|1 : TAAATAGTTTAGGTGAAATGCTTTTGTTTTTTGTTTTTTGTTTTCATTTTATTACCCACATCTTATCAAAGTTTACAACACCCCCAAACACCTCATATCCCTCTCCGCATAGTTCGAGTTTCGTCTATGGGTCTTTCGTTGACACAA-----CAGCATATAAAAAA-TTGATTAAATCAATTTTAATACAGAAAAAATGACAGAATGAGAAATAATAAAATAAGTGTGTATGGGGGTGAGAGGGGTGTGTGTGTGTGTGTGTGGGGGGGGGGGGGGGGGGCTCAATTATCACATGCACGTATAGACTTTACACATACCATGCACGTGTGTAGGCCTGTGTAAACAAGATCGAGTGCCCGCAAACTTTTGGGAAAGGAAACCTTCGACAATACGTTCGGGCATATCCAC--------------ATTGGTTTACATAGGCG--GATTCAAGGG--G---------GCGCAA-CCCGCAAAAATCT-CCGGACATATA-------GGTACTTGTTAACAACAACTGTGT----ATT--AGGAGAATACAATGGTTTGAGACAA-ATATAGCATAGTAACAATGTTCATAAGTATATGGAAAATTC---------------GCAATATGTATTTACATGACCAAGTCAAAGGACGAAAATCAGTGAAC----CGTCATTCTTTGCTATTTTATTTT---CTGTT-TTTTTTCCCAA-TCATATTCCCTTATTAAAGTTCTGTCTGAAATTCATAACAAAACGTTCGTAAAATAAATGTCAAACAAAAAGATTAAATCAAAACCATTTCAAGTCTTGATTTTTAATTTTTTTCGGGGAGGTGTTGCTTTTAATCATATTCGCTGATTGCAAGTCTGTCATCATAACAAAATGCATGAAGTTAACCAA--ACTTT-TCAG--ATAA--------ACAAAAAGCA---CATAAAAG-AAT--AGTAAA-AATG-GAAAGCTTATCTGTGTGTATGCACAGTTACTTTGTTATACATAT----GAATATA--TGTGGG-GAAA-A-TATCATTCGTGTAAAATTGAATtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagtaaatagtttaggtgaaatgcttttgttttttgttttttgttttcattttattacccacatcttatcaaagtttacaacacccccaaacacctcatatccctctccgcatagttcgagtttcgtctatgggtctttcgttgacacaacagcatataaaaaattgattaaatcaattttaatacagaaaaaatgacagaatgagaaataataaaataagtgtgtatgggggtgagaggggtgtgtgtgtgtgtgtgtggggggggggggggggggctcaattatcacatgcacgtatagactttacacataccatgcacgtgtgtaggcctgtgtaaacaagatcgagtgcccgcaaacttttgggaaaggaaaccttcgacaatacgttcgggcatatccacattggtttacataggcggattcaagggggcgcaacccgcaaaaatctccggacatataggtacttgttaacaacaactgtgtattaggagaatacaatggtttgagacaaatatagcatagtaacaatgttcataagtatatggaaaattcgcaatatgtatttacatgaccaagtcaaaggacgaaaatcagtgaaccgtcattctttgctattttattttctgttttttttcccaatcatattcccttattaaagttctgtctgaaattcataacaaaacgttcgtaaaataaatgtcaaacaaaaagattaaatcaaaaccatttcaagtcttgatttttaatttttttcggggaggtgttgcttttaatcatattcgctgattgcaagtctgtcatcataacaaaatgcatgaagttaaccaaacttttcagataaacaaaaagcacataaaagaatagtaaaaatggaaagcttatctgtgtgtatgcacagttactttgttatacatatgaatatatgtggggaaaatatcattcgtgtaaaattgaatgaatgtataannnnnnnnnnnnnnnnnnnnnnnnnngtacatttcatatcattttattaacattccatcttcatgatttcattaagagag
gi|10 : aagccacgtggcaattttaatgtgtacacagactacagaatcttaacttaatgtatcaatttcacgacagccatcgaagtttacaaatgtactaattataaaacattggttacaattaaaacatctagatgttaaacatcagatgctgctggttatttaagttatcttgcacctgtttcaccaacattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagTAGATTATCCTG-TGGCAGCTTAACCAACATATA--TAAA-----TCTATT-C-TTAACTTCTTAAAAATGCTTCTAAATGACCATGA--TCATTGACTGGTTCTGATACA-GTTACACATAGTTTTACTTACATTAATTACAACTTGG-----TAACCAGT-AAAA-----T----gaatgtataannnnnnnnnnnnnnnnnnnnnnnnnngtacatttcatatcattttattaacattccatcttcatgatttcattaagagag
gi|11 : ATTTGAA----CTCG-C-CCTGTGTCACCAACATATACTTAAATGCTTAAAA----ATTAAA-CCTTTGAAAAACAGCCAGCTGGTCATAAAATTAA-GACCGGTTCCA-TAAATACTGCATATGGTTTCACTGGTGTTAATTATATAATAGATA
gi|12 : AACCAACTACATTATCACCTACAG--------AAAAAATACA---CATAAAAACAATCCAGTAAATAACGAGATAGCAAATCTATGTGTATCCACATACACATCGATATGCATAC----GAAAGTA--TATGTG-GAAA-A-TATTATTCTTGTA
gi|13 : aGTATGCACAGTTACTTTTCTATATATACCCATGAATATAATTATGTGTGAAATA-TGTCACTCGTGTAAAATTGAATTtataaa
gi|14 : taaatattattattattattattattaGCTGAA-TGCCCCA-CCT---AAAATCTTCTGGCCATTTTAA-----GGTATCTGGCAGTAACTACTCTAT----TTTTTAGGAGTCTACCATGGTCTGAAACAA-AAATATCATTGTAATAATGTACAGAAATAaatgtatgacttacatgtaata
gi|15 : ATGGGCGTGGATTCAATGG--GGGCTGGGGTGCCCC----CGTACACCTCTCCCAAATCTATCTGTCATAGGTTACTGCCAATAACAACTGTATATTAATT--AAGACAATACAGTGACCTGAAAC
gi|16 : tTCAAAT-ATTTTGGCTCTTGATTCACCAGTATATACTTAAA-----ACAA---------------GGATAAGCAGCCAGGTGATCATGA------CAA---GTTCTAGTAAA-
gi|18 : AAACCACGTGGCAATTTTAATATGTACACAGACTACAGACTGTTAACAAAATGTATCATTATCACGACAACCATCGAGG
gi|19 : AATAAATAAACAACCAATCAAAATTTAGT----TAAG--TTTTAAGTA-TTAAAGTAAAATGTT
gi|2 : acatAAGCCACGTGTCAATTTTACTGTGTACACAGACTACAGAATCTTAACTTAATGTATCAATTTCACGACAACCATCGAAGTTTACAAATGTACTCATTATAAAACATTGGTTACAATTAAAACATCTCGATGTTAAACATCAGATGCTGCTAGTTATTTAAATTATCTTG-CTCCTCTTTCACCAACATATGCTTAAA-----AAGACC-CACTAAAATCTTAGAAAAGCAGCCAGGTGAGCATGA--TTGACGACTGGTTCCAGTAAA-ACTGCACATAGCTTCATTGATTTTGATTTTAAACTAGATTAAAAACCAGATAAAA-----T----TAAG--TT--AAGTA-TTTAGGTGAAGTGTTTTTCT------------------ATTTTATTACCCACATCTTATCAAAGTTTACAACACCCC-AAACACCTCATATCCCTCCCCACATAGCT-GAGTTTCGTCTATGGGCCTTCCGTTGACACAAAAAAACAGCATATAAAAAAGTTGATTAAATCAATTTTAATACAGAAGAAATGACAGAATGAGAAATAATAAAATAAGTGTGTGTG----TTGGAGGGG-----------------GGGAGGGGGGGGGGGGGGCTCAATTATCACGTGCACGTATAAACTTTACACATACCATGCACGTGTGTACGCCTGTGTAAACAAGATCGAGTGCACGCAAACTTTTGGGAAAGTAAACCTTCGACAATACGTTCGGGCATATCCACACAGCTTTTTCAATATTGGTTTACATAGGCG--GATTCAAGGGTCGGGCTTGG-TGCCCCAACCCGTAAAAATCTCC-GGACATATC-------AGTAATTGTTAACAACAACTGTGT----ATT--AGGAGAATACAACGGTTTGAGACAA-ATGTAGCATAGTAACAATGTTCATAAGTATATGGAAAATTCGCAGTATCTATCGTGGCAATATGTATTTGCATGACCAAGTCAAAGGACGAAAATCAGTGAACTTTTCGTCATTCTTTGCTATTTTATTTT---CTGTTGTTTTTTCCCAAATCATATTCCCTTATTAAAGTTCTGTCTGAAATTCATAACAAAACGTCCCTAAAATAAATGT-AAA-AAAAAGATAAAATCAAAACCATTTCAAGTCTTGATTTTTATTTTTTTCCAGGGAGGTGTTGCTTTTAATCATATTCGCTGATTGCAAGTCTGTCATCATAACAAAATGCATGAAGTAAACCAA--ACTTT-TCAG--ATAA--------ACAAAACGCA---CATAAAAG-AAT--AGTAAA-AATG-GAAAGCTTATCTGTGTGTATGCACAGTTACTTTGTTATACATAC----GAATATA--TTTGGG-GAAA-A-TATCTTTCGTGTAAAATTGAATTgctgaaatagaagacaga
gi|20 : TGATTATAAA-TAAATAAATAATCAGTCTAAA-----T----TAAG--TTTTAAATTGTT--GGTGAAA
gi|21 : gttatttttatacCAGTCAAAACTTAAT----TAAG--TTTTAAGTATTTCAGcataagccaag
gi|3 : AAAATGCATGAATTTAACGAA--ACTTT-TAAG--ATAAGAATTTTAAAAAAATCCAGCTTATAAATA-AAT--AGCAAA-AATG-GAAAGTAAATCTGTTTTCATACATAGTTACTTTGCTATACATAT----GAATATA--TTTGTG-AAAA-ATTGTCATTC-TGTAATATTGtaaatttggtgaaacagatgcctggt
gi|4 : ACAGTTACGTTTTTATACCTAT----GAATGTA--TATGTG-AAAA-A-TGTTATTCGTGTGAAATTGAATTttagctctatagcaagactatctagatattccggcatgcttgataaaaaaaactactcccgcccagagagatccagaggatattaaagataatcagtaaccaacacacacaactttgtatcttattaaattccaggatttataatagattacattagccctccaaaacaatataattcgtgtaaaattgaattaatgtagaactcaaaccccc
gi|6 : tttcattgatagactacaagtaaatacaattttaaaataaacatctttatttttttgcttgataTGTTAATAACAATTGTGT----A---------------ATAGTCTGAAACAAGATATAGTATAGTAACACTGTTCATAAGTATATGGGAAATTTGCAGTATCTATCATGGCAATATGTATTTACATGTCGGATTCAAGGGACGTAAATCAGTGAACTTTTCGTCAGTCTTTGCTATTTTATTTCATGTTGTTGTTTTTTCTCAA-TCATATTCCCTGATTAAAGTTCTGTCTGAAaatgtatagctcaatcttatatcgtctcttattcctctatctccttttctctctctttctctctatattgttgtgttaaaattccatgttcataatctctttaagaga
gi|9 : cA-TCTAAGAAA-GCAGCCAGGTGATCATGC--TTTTAGACAGGTTCCAGTAAA-ACTGTATATTGTTT-------ATTGATTATATAATAAATAAATAACCAGTCAAAA-----CTTAGTAAGGTTTTTAAGTA-TT--GGTGAAA
gi|9 : cttaccaacttctACCTGG-CTTCTGTTTCACCA----ATACTTAAA-----A--ACCTTACTAAG-TTTTcagaagccaggt
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): ATATGTTATATATATTTAACTTGTCTGTTATATAACATTTTGTTAAGATTACNNNNNNNNNNATATATATATATATGTATATTCCAGCATGATTAATAAAAAAACTGCTTCTGCCCAGAGAGAGCCAGAGAATAAAATAATCAGTAAACAACACACAAGATTTTGTATCTTGTTTAAATCCAGGATTTTTAATAGATTACAAAAGTCATCCAAACAATACA
Unaligned ( gi|7 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAATATCCTTAATGGAGAGAATATATAAGACCAGATTAATAACATTTTAGACGTGTAATACCTATATTTGTATGAATCCATATTAATCAAGATCTATATGATAAAAAATCATCCCAACTTCAAATGAAATAAAATTCTGGCAAAATATTGATTTGAACAAAAACTTCTA
Unaligned ( gi|8 ): TAATTTGTTAGCAAATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCAGCATGCTTGATAAAAAAACTACTTACGCTTAGAGAGAGCCGGAGAATAAAAAAATCAGTAACCAACACACAAGGCTTTGTATTTTATTAAATTCCAGGATTTATAATAGATTACAAAAGCCACCCAAAACAATA
Unaligned ( gi|17 ): TAACAACTTTAATCTTAATGAAGTTTCAAGGTGATAATGTTGTTAGACAGGATCTATTGCAAGTGCATATTATATTATAAAT
Unaligned ( gi|22 ): TATATACATAAACAAATAACCAATCAAAATTGAGTTAAATGTTGATGAAACAGAAACCA
Alignments
lowQualScore : 66666666666666666666666 2222222 11111111 3333333333 22 666666666666666666 1 1 22222 1 2222 55555555555555555 55555555555555 11 11 1111 11 1 555555555 222222222 1 222 1 1 1 11 1 11 33333333 111 1 11 1 1 1111
lowQualScore : 1 1 66 6 7 1 99999999999999999999999 6 6666666 6 3 8 1 22222222 9999 3333333333 99 5 77 66 1 555555555555555555 5 5 77777 5 2222 1 99999999999999999 1 1 1 22222222222222 88 88 6 3333 33 33 9 999999999 1 000000000 11 0 0 6 3 0 7 333 6 3 1 5 5 1 1 33 0 33 66666666 1 44 777 0 33 0 0 22 0 4444 99 1 6 6 6 2
lowQualScore : . . .. . . . ....................... . ....... . . . . ........ .... .......... .. . .. .. . .................. . . ..... . .... . ................. . . . .............. .. .. . .... .. .. . ......... . ......... .. . . . . . . ... . . . . . . . .. . .. ........ . .. ... . .. . . .. . .... .. . . . . .
lowQualScore : 0 0 44 7 5 7 44444444444444444444444 0 6666666 4 2 0 2 55555555 3333 9999999999 22 7 99 99 0 000000000000000000 0 0 55555 0 5555 0 55555555555555555 0 0 0 55555555555555 33 33 7 0000 22 22 0 888888888 0 888888888 66 6 0 7 7 7 3 333 7 3 0 0 0 0 0 88 0 88 22222222 0 55 555 0 88 0 0 00 3 2222 22 0 7 7 7 5
consensus : AAGCCACGTGGCAATTTTAATGTGTACACAGACTACAGAATCTTAACTTAATGTATCAATTTCACGACAACCATCGAAGTTTACAAATGTACTNATTATAAAACATTGGTTACAATTAAAACATCTNGATGTTAAACATCAGATGCTGCTGGTTATTTAAATTATCTTG-CTCCTGTTTCACCAACATATACTTAAA-----ACGACC-C---ACTAAA-TCTTAGAAAAGCAGCCAGGTGATCATGA--TTANCGACCGGTTCCAGTAAA-ACTGCACATAGTTTCACTGACGTTGATTATA-AAATAGATAAATAACCAGTCAAAA-----T----TAAG--TTTTAAG-TA--TT-AGGTGAAATGTTTTTNTTTTTTGTTTTTTGTTTTCATTTTATTACCCACATCTTATCAAAGTTTACAACACCCCCAAACACCTCATATCCCTCCCCGCATAGCTCGAGTTTCGTCTATGGGCCTTCCGTTGACACAAAAAAACAGCATATAAAAAAGTTGATTAAATCAATTTTAATACAGAAGAAATGACAGAATGAGAAATAATAAAATAAGTGTGTGTGGGGGTNGGAGGGGTGTGTGTGTGTGTGTGTGGGGGGGGGGGGGGGGGGCTCAATTATCACGTGCACGTATAGACTTTACACATACCATGCACGTGTGTANGCCTGTGTAAACAAGATCGAGTGCNCGCAAACTTTTGGGAAAGNAAACCTTCGACAATACGTTCGGGCATATCCACACAGCTTTTTCAATATTGGTTTACATAGGCG--GATTCAAGGG--GGGCTGGG-TGCCCC-ACCCGTAAAAATCTCCCGGACATATC------A-GGTANCTGTTAATAACAACTGTGT----ATT--AGGAGAATACAATGGTCTGAAACAA-ATATAGCATAGTAACAATGTTCATAAGTATATGGAAAATTCGCAGTATCTATCGTGGCAATATGTATTTACATGACCGAGTCAAAGGACGAAAATCAGTGAACTTTTCGTCATTCTTTGCTATTTTATTTT---CTGTTGTTTTTTCCC-AATCATATTCCCTTATTAAAGTTCTGTCTGAAATTCATAACAAAACGTCCNTAAAATAAATGTCAAACAAAAAGATNAAATCAAAACCATTTCAAGTCTTGATTTTTANTTTTTTCCGGGGAGGTGTTGCTTTTAATCATATTCGCTGATTGCAAGTCTGTCATCATAACAAAATGCATGAAGTTAACCAA--ACTTT-TCAG--ATAA--------ANAAAACGCA---CATAAAAG-AAT--AGTAAA-AATG-GAAAGCNNATCTGTGTGTATGCACAGTTACTTTGTTATACATAC----GAATATA--TNTGTG-GAAA-A-TGTCATTCGTGTAAAATTGAATT
Reference ( family-1778 ) : AAGCCACGTGGCAATTTTAATGTGTACACAGACTACAGAATCTTAACTTAATGTATCAATTTCACGACAACCATCGAAGTTTACAAATGTACTNATTATAAAACATTGGTTACAATTAAAACATCTNGATGTTAAACATCAGATGCTGCTGGTTATTTAAATTATCTTG-CTCCTGTTTCACCAACATATACTTAAA-----ACGACC-C---ACTAAA-TCTTAGAAAAGCAGCCAGGTGATCATGA--TTANCGACCGGTTCCAGTAAA-ACTGCACATAGTTTCACTGACGTTGATTATA-AAATAGATAAATAACCAGTCAAAA-----T----TAAG--TTTTAAG-TA--TT-AGGTGAAATGTTTTTNTTTTTTGTTTTTTGTTTTCATTTTATTACCCACATCTTATCAAAGTTTACAACACCCCCAAACACCTCATATCCCTCCCCGCATAGCTCGAGTTTCGTCTATGGGCCTTCCGTTGACACAAAAAAACAGCATATAAAAAAGTTGATTAAATCAATTTTAATACAGAAGAAATGACAGAATGAGAAATAATAAAATAAGTGTGTGTGGGGGTNGGAGGGGTGTGTGTGTGTGTGTGTGGGGGGGGGGGGGGGGGGCTCAATTATCACGTGCACGTATAGACTTTACACATACCATGCACGTGTGTANGCCTGTGTAAACAAGATCGAGTGCNCGCAAACTTTTGGGAAAGNAAACCTTCGACAATACGTTCGGGCATATCCACACAGCTTTTTCAATATTGGTTTACATAGGCG--GATTCAAGGG--GGGCTGGG-TGCCCC-ACCCGTAAAAATCTCCCGGACATATC------G-GGTANCTGTTAATAACAACTGTGT----ATT--AGGAGAATACAATGGTCTGAAACAA-ATATAGCATAGTAACAATGTTCATAAGTATATGGAAAATTCGCAGTATCTATCGTGGCAATATGTATTTACATGACCGAGTCAAAGGACGAAAATCAGTGAACTTTTCGTCATTCTTTGCTATTTTATTTT---CTGTTGTTTTTTCCC-AATCATATTCCCTTATTAAAGTTCTGTCTGAAATTCATAACAAAACGTCCNTAAAATAAATGTCAAACAAAAAGATNAAATCAAAACCATTTCAAGTCTTGATTTTTANTTTTTTCCGGGGAGGTGTTGCTTTTAATCATATTCGCTGATTGCAAGTCTGTCATCATAACAAAATGCATGAAGTTAACCAA--ACTTT-TCAG--ATAA--------ANAAAACGCA---CATAAAAG-AAT--AGTAAA-AATG-GAAAGCNNATCTGTGTGTATGCACAGTTACTTTGTTATACATAC----GAATATA--TNTGTG-GAAA-A-TGTCATTCGTGTAAAATTGAATT
gi|1 : AAGCCACGTGGCAATTTTAATGTGTACACAGACTACAGAATCTTAACTTAATGTATCAATTTCACGACAGCCATCGAAGTTTACAAATGTACTAATTATAAAACATTGGTTACAATTAAAACATCTAGATGTTAAACATCAGATGCTGCTGGTTATTTAAGTTATCTTG-CACCTGTTTCACCAACAT
gi|1 : TAAA-TAGTTT-AGGTGAAATGCTTTTGTTTTTTGTTTTTTGTTTTCATTTTATTACCCACATCTTATCAAAGTTTACAACACCCCCAAACACCTCATATCCCTCTCCGCATAGTTCGAGTTTCGTCTATGGGTCTTTCGTTGACACAA-----CAGCATATAAAAAA-TTGATTAAATCAATTTTAATACAGAAAAAATGACAGAATGAGAAATAATAAAATAAGTGTGTATGGGGGTGAGAGGGGTGTGTGTGTGTGTGTGTGGGGGGGGGGGGGGGGGGCTCAATTATCACATGCACGTATAGACTTTACACATACCATGCACGTGTGTAGGCCTGTGTAAACAAGATCGAGTGCCCGCAAACTTTTGGGAAAGGAAACCTTCGACAATACGTTCGGGCATATCCAC--------------ATTGGTTTACATAGGCG--GATTCAAGGG--G---------GCGCA-ACCCGCAAAAATCT-CCGGACATAT-------A-GGTACTTGTTAACAACAACTGTGT----ATT--AGGAGAATACAATGGTTTGAGACAA-ATATAGCATAGTAACAATGTTCATAAGTATATGGAAAATTC---------------GCAATATGTATTTACATGACCAAGTCAAAGGACGAAAATCAGTGAAC----CGTCATTCTTTGCTATTTTATTTT---CTGTT-TTTTTTCCC-AATCATATTCCCTTATTAAAGTTCTGTCTGAAATTCATAACAAAACGTTCGTAAAATAAATGTCAAACAAAAAGATTAAATCAAAACCATTTCAAGTCTTGATTTTTAATTTTTTTCGGGGAGGTGTTGCTTTTAATCATATTCGCTGATTGCAAGTCTGTCATCATAACAAAATGCATGAAGTTAACCAA--ACTTT-TCAG--ATAA--------ACAAAAAGCA---CATAAAAG-AAT--AGTAAA-AATG-GAAAGCTTATCTGTGTGTATGCACAGTTACTTTGTTATACATAT----GAATATA--TGTGGG-GAAA-A-TATCATTCGTGTAAAATTGAATtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagtaaatagtttaggtgaaatgcttttgttttttgttttttgttttcattttattacccacatcttatcaaagtttacaacacccccaaacacctcatatccctctccgcatagttcgagtttcgtctatgggtctttcgttgacacaacagcatataaaaaattgattaaatcaattttaatacagaaaaaatgacagaatgagaaataataaaataagtgtgtatgggggtgagaggggtgtgtgtgtgtgtgtgtggggggggggggggggggctcaattatcacatgcacgtatagactttacacataccatgcacgtgtgtaggcctgtgtaaacaagatcgagtgcccgcaaacttttgggaaaggaaaccttcgacaatacgttcgggcatatccacattggtttacataggcggattcaagggggcgcaacccgcaaaaatctccggacatataggtacttgttaacaacaactgtgtattaggagaatacaatggtttgagacaaatatagcatagtaacaatgttcataagtatatggaaaattcgcaatatgtatttacatgaccaagtcaaaggacgaaaatcagtgaaccgtcattctttgctattttattttctgttttttttcccaatcatattcccttattaaagttctgtctgaaattcataacaaaacgttcgtaaaataaatgtcaaacaaaaagattaaatcaaaaccatttcaagtcttgatttttaatttttttcggggaggtgttgcttttaatcatattcgctgattgcaagtctgtcatcataacaaaatgcatgaagttaaccaaacttttcagataaacaaaaagcacataaaagaatagtaaaaatggaaagcttatctgtgtgtatgcacagttactttgttatacatatgaatatatgtggggaaaatatcattcgtgtaaaattgaatgaatgtataannnnnnnnnnnnnnnnnnnnnnnnnngtacatttcatatcattttattaacattccatcttcatgatttcattaagagag
gi|10 : aagccacgtggcaattttaatgtgtacacagactacagaatcttaacttaatgtatcaatttcacgacagccatcgaagtttacaaatgtactaattataaaacattggttacaattaaaacatctagatgttaaacatcagatgctgctggttatttaagttatcttgcacctgtttcaccaacattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagTAGATTATCCTG-TGGCAGCTTAACCAACATATA--TAAA-----TCTATT-CTTAACT----TCTTAAAAATGCTTCTAAATGACCATGA--TCATTGACTGGTTCTGATACA-GTTACACATAGTTTTACTTACATTAATTACA-ACTTGG-----TAACCAGT-AAAA-----T----gaatgtataannnnnnnnnnnnnnnnnnnnnnnnnngtacatttcatatcattttattaacattccatcttcatgatttcattaagagag
gi|11 : ATTTGAA----CTCG-C-CCTGTGTCACCAACATATACTTAAATGCTTAAAA-------ATTAAA-CCTTTGAAAAACAGCCAGCTGGTCATAAAATTAA-GACCGGTTCCA-TAAATACTGCATATGGTTTCACTGGTGTTAATTATA-TAATAGATA
gi|12 : AACCAACTACATTATCACCTACAG--------AAAAAATACA---CATAAAAACAATCCAGTAAATAACGAGATAGCAAATCTATGTGTATCCACATACACATCGATATGCATAC----GAAAGTA--TATGTG-GAAA-A-TATTATTCTTGTA
gi|13 : aGTATGCACAGTTACTTTTCTATATATACCCATGAATATAATTATGTGTGAAATA-TGTCACTCGTGTAAAATTGAATTtataaa
gi|14 : taaatattattattattattattattaGCTGAA-TGCCCC-ACCT---AAAATCTTCTGGCCATTTT------AAGGTATCTGGCAGTAACTACTCTAT----TTTTTAGGAGTCTACCATGGTCTGAAACAA-AAATATCATTGTAATAATGTACAGAAATAaatgtatgacttacatgtaata
gi|15 : ATGGGCGTGGATTCAATGG--GGGCTGGGGTGCCCC----CGTACACCTCTCCCAAATCTATCTGTCATA-GGTTACTGCCAATAACAACTGTATATTAATT--AAGACAATACAGTGACCTGAAAC
gi|16 : tTCAAAT-ATTTTGGCTCTTGATTCACCAGTATATACTTAAA-----ACAA------------------GGATAAGCAGCCAGGTGATCATGA------CAA---GTTCTAGTAAA-
gi|18 : AAACCACGTGGCAATTTTAATATGTACACAGACTACAGACTGTTAACAAAATGTATCATTATCACGACAACCATCGAGG
gi|19 : AATAAATAAACAACCAATCAAAATTTAGT----TAAG--TTTTAAG-TA--TTAAAGTAAAATGTT
gi|2 : acatAAGCCACGTGTCAATTTTACTGTGTACACAGACTACAGAATCTTAACTTAATGTATCAATTTCACGACAACCATCGAAGTTTACAAATGTACTCATTATAAAACATTGGTTACAATTAAAACATCTCGATGTTAAACATCAGATGCTGCTAGTTATTTAAATTATCTTG-CTCCTCTTTCACCAACATATGCTTAAA-----AAGACC-C---ACTAAAATCTTAGAAAAGCAGCCAGGTGAGCATGA--TTGACGACTGGTTCCAGTAAA-ACTGCACATAGCTTCATTGATTTTGATTTTA-AACTAGATTAAAAACCAGATAAAA-----T----TAAG--TT--AAG-TA--TTTAGGTGAAGTGTTTTTCT------------------ATTTTATTACCCACATCTTATCAAAGTTTACAACACCCC-AAACACCTCATATCCCTCCCCACATAGCT-GAGTTTCGTCTATGGGCCTTCCGTTGACACAAAAAAACAGCATATAAAAAAGTTGATTAAATCAATTTTAATACAGAAGAAATGACAGAATGAGAAATAATAAAATAAGTGTGTGTG----TTGGAGGGG-----------------GGGAGGGGGGGGGGGGGGCTCAATTATCACGTGCACGTATAAACTTTACACATACCATGCACGTGTGTACGCCTGTGTAAACAAGATCGAGTGCACGCAAACTTTTGGGAAAGTAAACCTTCGACAATACGTTCGGGCATATCCACACAGCTTTTTCAATATTGGTTTACATAGGCG--GATTCAAGGGTCGGGCTTGG-TGCCCCAACCCGTAAAAATCT-CCGGACATATC--------AGTAATTGTTAACAACAACTGTGT----ATT--AGGAGAATACAACGGTTTGAGACAA-ATGTAGCATAGTAACAATGTTCATAAGTATATGGAAAATTCGCAGTATCTATCGTGGCAATATGTATTTGCATGACCAAGTCAAAGGACGAAAATCAGTGAACTTTTCGTCATTCTTTGCTATTTTATTTT---CTGTTGTTTTTTCCCAAATCATATTCCCTTATTAAAGTTCTGTCTGAAATTCATAACAAAACGTCCCTAAAATAAATGT-AAA-AAAAAGATAAAATCAAAACCATTTCAAGTCTTGATTTTTATTTTTTTCCAGGGAGGTGTTGCTTTTAATCATATTCGCTGATTGCAAGTCTGTCATCATAACAAAATGCATGAAGTAAACCAA--ACTTT-TCAG--ATAA--------ACAAAACGCA---CATAAAAG-AAT--AGTAAA-AATG-GAAAGCTTATCTGTGTGTATGCACAGTTACTTTGTTATACATAC----GAATATA--TTTGGG-GAAA-A-TATCTTTCGTGTAAAATTGAATTgctgaaatagaagacaga
gi|20 : TGATTATA-AA-TAAATAAATAATCAGTCTAAA-----T----TAAG--TTTTAAATTG--TT--GGTGAAA
gi|21 : gttatttttatacCAGTCAAAACTTAAT----TAAG--TTTTAAG-TA--TT-cataagccaag
gi|22 : TATATACATAAACAAATAACCAATCAAAA-----T----TGAG----TTAAA-TG--TT--GATGAAAtcagtaaatttggtgaaacagatgcctggt
gi|3 : AAAATGCATGAATTTAACGAA--ACTTT-TAAG--ATAAGAATTTTAAAAAAATCCAGCTTATAAATA-AAT--AGCAAA-AATG-GAAAGTAAATCTGTTTTCATACATAGTTACTTTGCTATACATAT----GAATATA--TTTGTG-AAAA-ATTGTCATTC-TGTAATATTGcagaaacca
gi|4 : ACAGTTACGTTTTTATACCTAT----GAATGTA--TATGTG-AAAA-A-TGTTATTCGTGTGAAATTGAATTttagctctatagcaagactatctagatattccggcatgcttgataaaaaaaactactcccgcccagagagatccagaggatattaaagataatcagtaaccaacacacacaactttgtatcttattaaattccaggatttataatagattacattagccctccaaaacaatataattcgtgtaaaattgaattaatgtagaactcaaaccccc
gi|6 : tttcattgatagactacaagtaaatacaattttaaaataaacatctttatttttttgcttgataCTGTTAATAACAATTGTGT----A---------------ATAGTCTGAAACAAGATATAGTATAGTAACACTGTTCATAAGTATATGGGAAATTTGCAGTATCTATCATGGCAATATGTATTTACATGTCGGATTCAAGGGACGTAAATCAGTGAACTTTTCGTCAGTCTTTGCTATTTTATTTCATGTTGTTGTTTTTTCTC-AATCATATTCCCTGATTAAAGTTCTGTCTGAAaatgtatagctcaatcttatatcgtctcttattcctctatctccttttctctctctttctctctatattgttgtgttaaaattccatgttcataatctctttaagaga
gi|9 : A-TCTAAGAAA-GCAGCCAGGTGATCATGC--TTTTAGACAGGTTCCAGTAAA-ACTGTATATTGTTT-------ATTGATTATA-TAATAAATAAATAACCAGTCAAAA-----CTTAGTAAGGTTTTTAAG-TA--TT--GGTGAAA
gi|9 : cttaccaacttctACCTGG-CTTCTGTTTCACCA----ATACTTAAA-----A--ACCTT---ACTAAG-TTTTcagaagccaggt
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): ATATGTTATATATATTTAACTTGTCTGTTATATAACATTTTGTTAAGATTACNNNNNNNNNNATATATATATATATGTATATTCCAGCATGATTAATAAAAAAACTGCTTCTGCCCAGAGAGAGCCAGAGAATAAAATAATCAGTAAACAACACACAAGATTTTGTATCTTGTTTAAATCCAGGATTTTTAATAGATTACAAAAGTCATCCAAACAATACA
Unaligned ( gi|7 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAATATCCTTAATGGAGAGAATATATAAGACCAGATTAATAACATTTTAGACGTGTAATACCTATATTTGTATGAATCCATATTAATCAAGATCTATATGATAAAAAATCATCCCAACTTCAAATGAAATAAAATTCTGGCAAAATATTGATTTGAACAAAAACTTCTA
Unaligned ( gi|8 ): TAATTTGTTAGCAAATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCAGCATGCTTGATAAAAAAACTACTTACGCTTAGAGAGAGCCGGAGAATAAAAAAATCAGTAACCAACACACAAGGCTTTGTATTTTATTAAATTCCAGGATTTATAATAGATTACAAAAGCCACCCAAAACAATA
Unaligned ( gi|17 ): TAACAACTTTAATCTTAATGAAGTTTCAAGGTGATAATGTTGTTAGACAGGATCTATTGCAAGTGCATATTATATTATAAAT
Alignments
lowQualScore : 66666666666666666666666 2222222 11111111 3333333333 22 666666666666666666 1 1 22222 1 2222 55555555555555555 55555555555555 11 11 1111 11 1 3333333333 222222222 1 222 1 1 1 11 1 11 33333333 111 1 11 1 1 1111
lowQualScore : 1 1 66 6 7 1 99999999999999999999999 6 6666666 6 3 8 1 22222222 9999 3333333333 99 5 77 66 1 555555555555555555 5 5 77777 5 2222 1 99999999999999999 1 1 1 22222222222222 88 88 6 3333 33 33 9 8888888888 1 000000000 11 0 0 6 3 0 7 333 6 3 1 5 5 1 1 33 0 33 66666666 1 44 777 0 33 0 0 22 0 4444 99 1 6 6 6 2
lowQualScore : . . .. . . . ....................... . ....... . . . . ........ .... .......... .. . .. .. . .................. . . ..... . .... . ................. . . . .............. .. .. . .... .. .. . .......... . ......... .. . . . . . . ... . . . . . . . .. . .. ........ . .. ... . .. . . .. . .... .. . . . . .
lowQualScore : 0 0 44 7 5 7 44444444444444444444444 0 6666666 4 2 0 2 55555555 3333 9999999999 22 7 99 99 0 000000000000000000 0 0 55555 0 5555 0 55555555555555555 0 0 0 55555555555555 33 33 7 0000 22 22 0 8888888888 0 888888888 66 6 0 7 7 7 3 333 7 3 0 0 0 0 0 88 0 88 22222222 0 55 555 0 88 0 0 00 3 2222 22 0 7 7 7 5
consensus : AAGCCACGTGGCAATTTTAATGTGTACACAGACTACAGAATCTTAACTTAATGTATCAATTTCACGACAACCATCGAAGTTTACAAATGTACTNATTATAAAACATTGGTTACAATTAAAACATCTNGATGTTAAACATCAGATGCTGCTGGTTATTTAAATTATCTTG-CTCCTGTTTCACCAACATATACTTAAA-----ACGACC-C---ACTAAA-TCTTAGAAAAGCAGCCAGGTGATCATGA--TTANCGACCGGTTCCAGTAAA-ACTGCACATAGTTTCACTGACGTTGATTATA-AAATAGATAAATAACCAGTCAAAA-----T----TAAG--TTTTAAG-TA--TT-AGGTGAAATGTTTTTNTTTTTTGTTTTTTGTTTTCATTTTATTACCCACATCTTATCAAAGTTTACAACACCCCCAAACACCTCATATCCCTCCCCGCATAGCTCGAGTTTCGTCTATGGGCCTTCCGTTGACACAAAAAAACAGCATATAAAAAAGTTGATTAAATCAATTTTAATACAGAAGAAATGACAGAATGAGAAATAATAAAATAAGTGTGTGTGGGGGTNGGAGGGGTGTGTGTGTGTGTGTGTGGGGGGGGGGGGGGGGGGCTCAATTATCACGTGCACGTATAGACTTTACACATACCATGCACGTGTGTANGCCTGTGTAAACAAGATCGAGTGCNCGCAAACTTTTGGGAAAGNAAACCTTCGACAATACGTTCGGGCATATCCACACAGCTTTTTCAATATTGGTTTACATAGGCG--GATTCAAGGG--GGGCTGGG-TGCCCC-ACCCGTAAAAATCTCCCGGACATATC------A-GGTANCTGTTAATAACAACTGTGT----ATT--AGGAGAATACAATGGTCTGAAACAA-ATATAGCATAGTAACAATGTTCATAAGTATATGGAAAATTCGCAGTATCTATCGTGGCAATATGTATTTACATGACCGAGTCAAAGGACGAAAATCAGTGAACTTTTCGTCATTCTTTGCTATTTTATTTT---CTGTTGTTTTTTCCC-AATCATATTCCCTTATTAAAGTTCTGTCTGAAATTCATAACAAAACGTCCNTAAAATAAATGTCAAACAAAAAGATNAAATCAAAACCATTTCAAGTCTTGATTTTTANTTTTTTCCGGGGAGGTGTTGCTTTTAATCATATTCGCTGATTGCAAGTCTGTCATCATAACAAAATGCATGAAGTTAACCAA--ACTTT-TCAG--ATAA--------ANAAAACGCA---CATAAAAG-AAT--AGTAAA-AATG-GAAAGCNNATCTGTGTGTATGCACAGTTACTTTGTTATACATAC----GAATATA--TNTGTG-GAAA-A-TGTCATTCGTGTAAAATTGAATT
Reference ( family-1778 ) : AAGCCACGTGGCAATTTTAATGTGTACACAGACTACAGAATCTTAACTTAATGTATCAATTTCACGACAACCATCGAAGTTTACAAATGTACTNATTATAAAACATTGGTTACAATTAAAACATCTNGATGTTAAACATCAGATGCTGCTGGTTATTTAAATTATCTTG-CTCCTGTTTCACCAACATATACTTAAA-----ACGACC-C---ACTAAA-TCTTAGAAAAGCAGCCAGGTGATCATGA--TTANCGACCGGTTCCAGTAAA-ACTGCACATAGTTTCACTGACGTTGATTATA-AAATAGATAAATAACCAGTCAAAA-----T----TAAG--TTTTAAG-TA--TT-AGGTGAAATGTTTTTNTTTTTTGTTTTTTGTTTTCATTTTATTACCCACATCTTATCAAAGTTTACAACACCCCCAAACACCTCATATCCCTCCCCGCATAGCTCGAGTTTCGTCTATGGGCCTTCCGTTGACACAAAAAAACAGCATATAAAAAAGTTGATTAAATCAATTTTAATACAGAAGAAATGACAGAATGAGAAATAATAAAATAAGTGTGTGTGGGGGTNGGAGGGGTGTGTGTGTGTGTGTGTGGGGGGGGGGGGGGGGGGCTCAATTATCACGTGCACGTATAGACTTTACACATACCATGCACGTGTGTANGCCTGTGTAAACAAGATCGAGTGCNCGCAAACTTTTGGGAAAGNAAACCTTCGACAATACGTTCGGGCATATCCACACAGCTTTTTCAATATTGGTTTACATAGGCG--GATTCAAGGG--GGGCTGGG-TGCCCC-ACCCGTAAAAATCTCCCGGACATATC------A-GGTANCTGTTAATAACAACTGTGT----ATT--AGGAGAATACAATGGTCTGAAACAA-ATATAGCATAGTAACAATGTTCATAAGTATATGGAAAATTCGCAGTATCTATCGTGGCAATATGTATTTACATGACCGAGTCAAAGGACGAAAATCAGTGAACTTTTCGTCATTCTTTGCTATTTTATTTT---CTGTTGTTTTTTCCC-AATCATATTCCCTTATTAAAGTTCTGTCTGAAATTCATAACAAAACGTCCNTAAAATAAATGTCAAACAAAAAGATNAAATCAAAACCATTTCAAGTCTTGATTTTTANTTTTTTCCGGGGAGGTGTTGCTTTTAATCATATTCGCTGATTGCAAGTCTGTCATCATAACAAAATGCATGAAGTTAACCAA--ACTTT-TCAG--ATAA--------ANAAAACGCA---CATAAAAG-AAT--AGTAAA-AATG-GAAAGCNNATCTGTGTGTATGCACAGTTACTTTGTTATACATAC----GAATATA--TNTGTG-GAAA-A-TGTCATTCGTGTAAAATTGAATT
gi|1 : AAGCCACGTGGCAATTTTAATGTGTACACAGACTACAGAATCTTAACTTAATGTATCAATTTCACGACAGCCATCGAAGTTTACAAATGTACTAATTATAAAACATTGGTTACAATTAAAACATCTAGATGTTAAACATCAGATGCTGCTGGTTATTTAAGTTATCTTG-CACCTGTTTCACCAACAT
gi|1 : TAAA-TAGTTT-AGGTGAAATGCTTTTGTTTTTTGTTTTTTGTTTTCATTTTATTACCCACATCTTATCAAAGTTTACAACACCCCCAAACACCTCATATCCCTCTCCGCATAGTTCGAGTTTCGTCTATGGGTCTTTCGTTGACACAA-----CAGCATATAAAAAA-TTGATTAAATCAATTTTAATACAGAAAAAATGACAGAATGAGAAATAATAAAATAAGTGTGTATGGGGGTGAGAGGGGTGTGTGTGTGTGTGTGTGGGGGGGGGGGGGGGGGGCTCAATTATCACATGCACGTATAGACTTTACACATACCATGCACGTGTGTAGGCCTGTGTAAACAAGATCGAGTGCCCGCAAACTTTTGGGAAAGGAAACCTTCGACAATACGTTCGGGCATATCCAC--------------ATTGGTTTACATAGGCG--GATTCAAGGG--G---------GCGCA-ACCCGCAAAAATCT-CCGGACATAT-------A-GGTACTTGTTAACAACAACTGTGT----ATT--AGGAGAATACAATGGTTTGAGACAA-ATATAGCATAGTAACAATGTTCATAAGTATATGGAAAATTC---------------GCAATATGTATTTACATGACCAAGTCAAAGGACGAAAATCAGTGAAC----CGTCATTCTTTGCTATTTTATTTT---CTGTT-TTTTTTCCC-AATCATATTCCCTTATTAAAGTTCTGTCTGAAATTCATAACAAAACGTTCGTAAAATAAATGTCAAACAAAAAGATTAAATCAAAACCATTTCAAGTCTTGATTTTTAATTTTTTTCGGGGAGGTGTTGCTTTTAATCATATTCGCTGATTGCAAGTCTGTCATCATAACAAAATGCATGAAGTTAACCAA--ACTTT-TCAG--ATAA--------ACAAAAAGCA---CATAAAAG-AAT--AGTAAA-AATG-GAAAGCTTATCTGTGTGTATGCACAGTTACTTTGTTATACATAT----GAATATA--TGTGGG-GAAA-A-TATCATTCGTGTAAAATTGAATtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagtaaatagtttaggtgaaatgcttttgttttttgttttttgttttcattttattacccacatcttatcaaagtttacaacacccccaaacacctcatatccctctccgcatagttcgagtttcgtctatgggtctttcgttgacacaacagcatataaaaaattgattaaatcaattttaatacagaaaaaatgacagaatgagaaataataaaataagtgtgtatgggggtgagaggggtgtgtgtgtgtgtgtgtggggggggggggggggggctcaattatcacatgcacgtatagactttacacataccatgcacgtgtgtaggcctgtgtaaacaagatcgagtgcccgcaaacttttgggaaaggaaaccttcgacaatacgttcgggcatatccacattggtttacataggcggattcaagggggcgcaacccgcaaaaatctccggacatataggtacttgttaacaacaactgtgtattaggagaatacaatggtttgagacaaatatagcatagtaacaatgttcataagtatatggaaaattcgcaatatgtatttacatgaccaagtcaaaggacgaaaatcagtgaaccgtcattctttgctattttattttctgttttttttcccaatcatattcccttattaaagttctgtctgaaattcataacaaaacgttcgtaaaataaatgtcaaacaaaaagattaaatcaaaaccatttcaagtcttgatttttaatttttttcggggaggtgttgcttttaatcatattcgctgattgcaagtctgtcatcataacaaaatgcatgaagttaaccaaacttttcagataaacaaaaagcacataaaagaatagtaaaaatggaaagcttatctgtgtgtatgcacagttactttgttatacatatgaatatatgtggggaaaatatcattcgtgtaaaattgaatgaatgtataannnnnnnnnnnnnnnnnnnnnnnnnngtacatttcatatcattttattaacattccatcttcatgatttcattaagagag
gi|10 : aagccacgtggcaattttaatgtgtacacagactacagaatcttaacttaatgtatcaatttcacgacagccatcgaagtttacaaatgtactaattataaaacattggttacaattaaaacatctagatgttaaacatcagatgctgctggttatttaagttatcttgcacctgtttcaccaacattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagTAGATTATCCTG-TGGCAGCTTAACCAACATATA--TAAA-----TCTATT-CTTAACT----TCTTAAAAATGCTTCTAAATGACCATGA--TCATTGACTGGTTCTGATACA-GTTACACATAGTTTTACTTACATTAATTACA-ACTTGG-----TAACCAGT-AAAA-----T----gaatgtataannnnnnnnnnnnnnnnnnnnnnnnnngtacatttcatatcattttattaacattccatcttcatgatttcattaagagag
gi|11 : ATTTGAA----CTCG-C-CCTGTGTCACCAACATATACTTAAATGCTTAAAA-------ATTAAA-CCTTTGAAAAACAGCCAGCTGGTCATAAAATTAA-GACCGGTTCCA-TAAATACTGCATATGGTTTCACTGGTGTTAATTATA-TAATAGATA
gi|12 : AACCAACTACATTATCACCTACAG--------AAAAAATACA---CATAAAAACAATCCAGTAAATAACGAGATAGCAAATCTATGTGTATCCACATACACATCGATATGCATAC----GAAAGTA--TATGTG-GAAA-A-TATTATTCTTGTA
gi|13 : aGTATGCACAGTTACTTTTCTATATATACCCATGAATATAATTATGTGTGAAATA-TGTCACTCGTGTAAAATTGAATTtataaa
gi|14 : taaatattattattattattattattaGCTGAA-TGCCCC-ACCT---AAAATCTTCTGGCCATTTT------AAGGTATCTGGCAGTAACTACTCTAT----TTTTTAGGAGTCTACCATGGTCTGAAACAA-AAATATCATTGTAATAATGTACAGAAATAaatgtatgacttacatgtaata
gi|15 : ATGGGCGTGGATTCAATGG--GGGCTGGGGTGCCCC----CGTACACCTCTCCCAAATCTATCTGTCATA-GGTTACTGCCAATAACAACTGTATATTAATT--AAGACAATACAGTGACCTGAAAC
gi|16 : tTCAAAT-ATTTTGGCTCTTGATTCACCAGTATATACTTAAA-----ACAA------------------GGATAAGCAGCCAGGTGATCATGA------CAA---GTTCTAGTAAA-
gi|18 : AAACCACGTGGCAATTTTAATATGTACACAGACTACAGACTGTTAACAAAATGTATCATTATCACGACAACCATCGAGG
gi|19 : AATAAATAAACAACCAATCAAAATTTAGT----TAAG--TTTTAAG-TA--TTAAAGTAAAATGTT
gi|2 : acatAAGCCACGTGTCAATTTTACTGTGTACACAGACTACAGAATCTTAACTTAATGTATCAATTTCACGACAACCATCGAAGTTTACAAATGTACTCATTATAAAACATTGGTTACAATTAAAACATCTCGATGTTAAACATCAGATGCTGCTAGTTATTTAAATTATCTTG-CTCCTCTTTCACCAACATATGCTTAAA-----AAGACC-C---ACTAAAATCTTAGAAAAGCAGCCAGGTGAGCATGA--TTGACGACTGGTTCCAGTAAA-ACTGCACATAGCTTCATTGATTTTGATTTTA-AACTAGATTAAAAACCAGATAAAA-----T----TAAG--TT--AAG-TA--TTTAGGTGAAGTGTTTTTCT------------------ATTTTATTACCCACATCTTATCAAAGTTTACAACACCCC-AAACACCTCATATCCCTCCCCACATAGCT-GAGTTTCGTCTATGGGCCTTCCGTTGACACAAAAAAACAGCATATAAAAAAGTTGATTAAATCAATTTTAATACAGAAGAAATGACAGAATGAGAAATAATAAAATAAGTGTGTGTG----TTGGAGGGG-----------------GGGAGGGGGGGGGGGGGGCTCAATTATCACGTGCACGTATAAACTTTACACATACCATGCACGTGTGTACGCCTGTGTAAACAAGATCGAGTGCACGCAAACTTTTGGGAAAGTAAACCTTCGACAATACGTTCGGGCATATCCACACAGCTTTTTCAATATTGGTTTACATAGGCG--GATTCAAGGGTCGGGCTTGG-TGCCCCAACCCGTAAAAATCT-CCGGACATATC------A--GTAATTGTTAACAACAACTGTGT----ATT--AGGAGAATACAACGGTTTGAGACAA-ATGTAGCATAGTAACAATGTTCATAAGTATATGGAAAATTCGCAGTATCTATCGTGGCAATATGTATTTGCATGACCAAGTCAAAGGACGAAAATCAGTGAACTTTTCGTCATTCTTTGCTATTTTATTTT---CTGTTGTTTTTTCCCAAATCATATTCCCTTATTAAAGTTCTGTCTGAAATTCATAACAAAACGTCCCTAAAATAAATGT-AAA-AAAAAGATAAAATCAAAACCATTTCAAGTCTTGATTTTTATTTTTTTCCAGGGAGGTGTTGCTTTTAATCATATTCGCTGATTGCAAGTCTGTCATCATAACAAAATGCATGAAGTAAACCAA--ACTTT-TCAG--ATAA--------ACAAAACGCA---CATAAAAG-AAT--AGTAAA-AATG-GAAAGCTTATCTGTGTGTATGCACAGTTACTTTGTTATACATAC----GAATATA--TTTGGG-GAAA-A-TATCTTTCGTGTAAAATTGAATTgctgaaatagaagacaga
gi|20 : TGATTATA-AA-TAAATAAATAATCAGTCTAAA-----T----TAAG--TTTTAAATTG--TT--GGTGAAA
gi|21 : gttatttttatacCAGTCAAAACTTAAT----TAAG--TTTTAAG-TA--TT-cataagccaag
gi|22 : TATATACATAAACAAATAACCAATCAAAA-----T----TGAG----TTAAA-TG--TT--GATGAAAtcagtaaatttggtgaaacagatgcctggt
gi|3 : AAAATGCATGAATTTAACGAA--ACTTT-TAAG--ATAAGAATTTTAAAAAAATCCAGCTTATAAATA-AAT--AGCAAA-AATG-GAAAGTAAATCTGTTTTCATACATAGTTACTTTGCTATACATAT----GAATATA--TTTGTG-AAAA-ATTGTCATTC-TGTAATATTGcagaaacca
gi|4 : ACAGTTACGTTTTTATACCTAT----GAATGTA--TATGTG-AAAA-A-TGTTATTCGTGTGAAATTGAATTttagctctatagcaagactatctagatattccggcatgcttgataaaaaaaactactcccgcccagagagatccagaggatattaaagataatcagtaaccaacacacacaactttgtatcttattaaattccaggatttataatagattacattagccctccaaaacaatataattcgtgtaaaattgaattaatgtagaactcaaaccccc
gi|6 : tttcattgatagactacaagtaaatacaattttaaaataaacatctttatttttttgcttgataCTGTTAATAACAATTGTGT----A---------------ATAGTCTGAAACAAGATATAGTATAGTAACACTGTTCATAAGTATATGGGAAATTTGCAGTATCTATCATGGCAATATGTATTTACATGTCGGATTCAAGGGACGTAAATCAGTGAACTTTTCGTCAGTCTTTGCTATTTTATTTCATGTTGTTGTTTTTTCTC-AATCATATTCCCTGATTAAAGTTCTGTCTGAAaatgtatagctcaatcttatatcgtctcttattcctctatctccttttctctctctttctctctatattgttgtgttaaaattccatgttcataatctctttaagaga
gi|9 : A-TCTAAGAAA-GCAGCCAGGTGATCATGC--TTTTAGACAGGTTCCAGTAAA-ACTGTATATTGTTT-------ATTGATTATA-TAATAAATAAATAACCAGTCAAAA-----CTTAGTAAGGTTTTTAAG-TA--TT--GGTGAAA
gi|9 : cttaccaacttctACCTGG-CTTCTGTTTCACCA----ATACTTAAA-----A--ACCTT---ACTAAG-TTTTcagaagccaggt
blockSeqs : C C TT G G A TGCTTAAAAATTAAA A AATTAA C G T G CACTGGTG TACA TTTAGT GT T . AA C . . . AAAAA G . T . C A T ACAGCTTTTTCAAT TG TC G GGGG AA GT T CTGTCATAG T ATTAATT TC G G G T ATG G A C . . A T CT A CT GAATTTTA A TA GCT C CC T A AA CCAT AT A T T T T
blockSeqs : TT . T A AAGACCCACTAAAA A TTGAC T G . A CATTGATT TAA CTTAAT . . . TA . . G GAA A GT C TAAG A TTTTT AA . G A T . G . . . . . C CG . . . . . TT . . A . . . G
blockSeqs : T . T G AACCTTACTAAG A TTTTA A G . T A AAC CTTAG . . . . TGG . . . CA A ATT AA . . . . . A TC . . . . . AA . . T . . . G
blockSeqs : . . T A ACAA . C . . . TAA T . . . . A . . . T . . . G
blockSeqs : . . . AA T . . . . . . A . . . .
blockSeqs : T . .
blockSeqCons : AGCCACTAAA************* ** ** ATTT*****
originalCons : AAGCCACGTGGCAATTTTAATGTGTACACAGACTACAGAATCTTAACTTAATGTATCAATTTCACGACAACCATCGAAGTTTACAAATGTACTNATTATAAAACATTGGTTACAATTAAAACATCTNGATGTTAAACATCAGATGCTGCTGGTTATTTAAATTATCTTG-CTCCTGTTTCACCAACATATACTTAAA-----ACGACC-C---ACTAAA-TCTTAGAAAAGCAGCCAGGTGATCATGA--TTANCGACCGGTTCCAGTAAA-ACTGCACATAGTTTCACTGACGTTGATTATA-AAATAGATAAATAACCAGTCAAAA-----T----TAAG--TTTTAAG-TA--TT-AGGTGAAATGTTTTTNTTTTTTGTTTTTTGTTTTCATTTTATTACCCACATCTTATCAAAGTTTACAACACCCCCAAACACCTCATATCCCTCCCCGCATAGCTCGAGTTTCGTCTATGGGCCTTCCGTTGACACAAAAAAACAGCATATAAAAAAGTTGATTAAATCAATTTTAATACAGAAGAAATGACAGAATGAGAAATAATAAAATAAGTGTGTGTGGGGGTNGGAGGGGTGTGTGTGTGTGTGTGTGGGGGGGGGGGGGGGGGGCTCAATTATCACGTGCACGTATAGACTTTACACATACCATGCACGTGTGTANGCCTGTGTAAACAAGATCGAGTGCNCGCAAACTTTTGGGAAAGNAAACCTTCGACAATACGTTCGGGCATATCCACACAGCTTTTTCAATATTGGTTTACATAGGCG--GATTCAAGGG--GGGCTGGG-TGCCCC-ACCCGTAAAAATCTCCCGGACATATC------A-GGTANCTGTTAATAACAACTGTGT----ATT--AGGAGAATACAATGGTCTGAAACAA-ATATAGCATAGTAACAATGTTCATAAGTATATGGAAAATTCGCAGTATCTATCGTGGCAATATGTATTTACATGACCGAGTCAAAGGACGAAAATCAGTGAACTTTTCGTCATTCTTTGCTATTTTATTTT---CTGTTGTTTTTTCCC-AATCATATTCCCTTATTAAAGTTCTGTCTGAAATTCATAACAAAACGTCCNTAAAATAAATGTCAAACAAAAAGATNAAATCAAAACCATTTCAAGTCTTGATTTTTANTTTTTTCCGGGGAGGTGTTGCTTTTAATCATATTCGCTGATTGCAAGTCTGTCATCATAACAAAATGCATGAAGTTAACCAA--ACTTT-TCAG--ATAA--------ANAAAACGCA---CATAAAAG-AAT--AGTAAA-AATG-GAAAGCNNATCTGTGTGTATGCACAGTTACTTTGTTATACATAC----GAATATA--TNTGTG-GAAA-A-TGTCATTCGTGTAAAATTGAATT
finalCons : AAGCCACGTGGCAATTTTAATGTGTACACAGACTACAGAATCTTAACTTAATGTATCAATTTCACGACAACCATCGAAGTTTACAAATGTACTNATTATAAAACATTGGTTACAATTAAAACATCTNGATGTTAAACATCAGATGCTGCTGGTTATTTAAATTATCTTG-CTCCTGTTTCACCAACATATACTTAAAAGCCACTAAA-------------TCTTAGAAAAGCAGCCAGGTGATCATGA--TTANCGACCGGTTCCAGTAAA-ACTGCACATAGTTTCACTGACGTTGATTATA-AAATAGATAAATAACCAGTCAAAA-----T----TAAG--TTTTAAG-TA--TT--GGTGAAATGTTTTTNTTTTTTGTTTTTTGTTTTCATTTTATTACCCACATCTTATCAAAGTTTACAACACCCCCAAACACCTCATATCCCTCCCCGCATAGCTCGAGTTTCGTCTATGGGCCTTCCGTTGACACAAAAAAACAGCATATAAAAAAGTTGATTAAATCAATTTTAATACAGAAGAAATGACAGAATGAGAAATAATAAAATAAGTGTGTGTGGGGGTNGGAGGGGTGTGTGTGTGTGTGTGTGGGGGGGGGGGGGGGGGGCTCAATTATCACGTGCACGTATAGACTTTACACATACCATGCACGTGTGTANGCCTGTGTAAACAAGATCGAGTGCNCGCAAACTTTTGGGAAAGNAAACCTTCGACAATACGTTCGGGCATATCCACACAGCTTTTTCAATATTGGTTTACATAGGCG--GATTCAAGGG--GGGCTGGG-TGCCCC-ACCCGTAAAAATCTCCCGGACATATC------A-GGTANCTGTTAATAACAACTGTGTATTT-----AGGAGAATACAATGGTCTGAAACAA-ATATAGCATAGTAACAATGTTCATAAGTATATGGAAAATTCGCAGTATCTATCGTGGCAATATGTATTTACATGACCGAGTCAAAGGACGAAAATCAGTGAACTTTTCGTCATTCTTTGCTATTTTATTTT---CTGTTGTTTTTTCCC-AATCATATTCCCTTATTAAAGTTCTGTCTGAAATTCATAACAAAACGTCCNTAAAATAAATGTCAAACAAAAAGATNAAATCAAAACCATTTCAAGTCTTGATTTTTANTTTTTTCCGGGGAGGTGTTGCTTTTAATCATATTCGCTGATTGCAAGTCTGTCATCATAACAAAATGCATGAAGTTAACCAA--ACTTT-TCAG--ATAA--------ANAAAACGCA---CATAAAAG-AAT--AGTAAA-AATG-GAAAGCNNATCTGTGTGTATGCACAGTTACTTTGTTATACATAC----GAATATA--TNTGTG-GAAA-A-TGTCATTCGTGTAAAATTGAATT
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): ATATGTTATATATATTTAACTTGTCTGTTATATAACATTTTGTTAAGATTACNNNNNNNNNNATATATATATATATGTATATTCCAGCATGATTAATAAAAAAACTGCTTCTGCCCAGAGAGAGCCAGAGAATAAAATAATCAGTAAACAACACACAAGATTTTGTATCTTGTTTAAATCCAGGATTTTTAATAGATTACAAAAGTCATCCAAACAATACA
Unaligned ( gi|7 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAATATCCTTAATGGAGAGAATATATAAGACCAGATTAATAACATTTTAGACGTGTAATACCTATATTTGTATGAATCCATATTAATCAAGATCTATATGATAAAAAATCATCCCAACTTCAAATGAAATAAAATTCTGGCAAAATATTGATTTGAACAAAAACTTCTA
Unaligned ( gi|8 ): TAATTTGTTAGCAAATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCAGCATGCTTGATAAAAAAACTACTTACGCTTAGAGAGAGCCGGAGAATAAAAAAATCAGTAACCAACACACAAGGCTTTGTATTTTATTAAATTCCAGGATTTATAATAGATTACAAAAGCCACCCAAAACAATA
Unaligned ( gi|17 ): TAACAACTTTAATCTTAATGAAGTTTCAAGGTGATAATGTTGTTAGACAGGATCTATTGCAAGTGCATATTATATTATAAAT
Alignments
lowQualScore : 555555555555555555555 2222222 11111111 3333333333 11 666666666666666666 1 1 22222 1 2222 55555555555555555 55555555555555 11 11 1111 11 1 333333333 3333333 1 222 1 1 1 11 1 11 33333333 111 1 11 1 1 1111
lowQualScore : 1 1 66 6 7 1 0 888888888888888888888 8 6 6666666 6 3 8 1 22222222 9999 3333333333 99 5 55 1 555555555555555555 5 5 77777 5 2222 1 99999999999999999 1 1 1 22222222222222 88 88 2 3333 33 33 9 666666666 2 1 4444444 11 0 0 6 3 0 7 333 6 3 1 5 5 1 1 33 0 33 66666666 1 44 777 0 33 0 0 22 0 4444 99 1 6 6 6 2
lowQualScore : . . .. . . . . ..................... . . ....... . . . . ........ .... .......... .. . .. . .................. . . ..... . .... . ................. . . . .............. .. .. . .... .. .. . ......... . . ....... .. . . . . . . ... . . . . . . . .. . .. ........ . .. ... . .. . . .. . .... .. . . . . .
lowQualScore : 0 0 44 7 5 7 8 999999999999999999999 0 0 6666666 4 2 0 2 55555555 3333 9999999999 22 7 77 0 000000000000000000 0 0 55555 0 5555 0 55555555555555555 0 0 0 55555555555555 33 33 5 0000 22 22 0 222222222 5 0 0000000 66 6 0 7 7 7 3 333 7 3 0 0 0 0 0 88 0 88 22222222 0 55 555 0 88 0 0 00 3 2222 22 0 7 7 7 5
consensus : AAGCCACGTGGCAATTTTAATGTGTACACAGACTACAGAATCTTAACTTAATGTATCAATTTCACGACAACCATCGAAGTTTACAAATGTACTNATTATAAAACATTGGTTACAATTAAAACATCTNGATGTTAAACATCAGATGCTGCTGGTTATTTAAATTATCTTG-CTCCTGTTTCACCAACATATACTTAAAAA---CCT----A--CTAAA--TCTTAGAA-AAGCAGCCAGGTGATCATGA--TTANCGACCGGTTCCAGTAAA-ACTGCACATAGTTTCACTGACGTTGATTATA-AAATAGATAAATAACCAGTCAAAA-----T----TAAG--TTTTAAG-TATT--GGTGAAATGTTTTTNTTTTTTGTTTTTTGTTTTCATTTTATTACCCACATCTTATCAAAGTTTACAACACCCCCAAACACCTCATATCCCTCCCCGCATAGCTCGAGTTTCGTCTATGGGCCTTCCGTTGACACAAAAAAACAGCATATAAAAAAGTTGATTAAATCAATTTTAATACAGAAGAAATGACAGAATGAGAAATAATAAAATAAGTGTGTGTGGGGGTNGGAGGGGTGTGTGTGTGTGTGTGTGGGGGGGGGGGGGGGGGGCTCAATTATCACGTGCACGTATAGACTTTACACATACCATGCACGTGTGTANGCCTGTGTAAACAAGATCGAGTGCNCGCAAACTTTTGGGAAAGNAAACCTTCGACAATACGTTCGGGCATATCCACACAGCTTTTTCAATATTGGTTTACATAGGCG--GATTCAAGGG--GGGCTGGG-TGCCCCA-CCCGTAAAAATCTCCCGGACATATC------A-GGTANCTGTTAATAACAACTGTGTAT---TT-AGGAGAATACAATGGTCTGAAACAA-ATATAGCATAGTAACAATGTTCATAAGTATATGGAAAATTCGCAGTATCTATCGTGGCAATATGTATTTACATGACCGAGTCAAAGGACGAAAATCAGTGAACTTTTCGTCATTCTTTGCTATTTTATTTT---CTGTTGTTTTTTCCCAA-TCATATTCCCTTATTAAAGTTCTGTCTGAAATTCATAACAAAACGTCCNTAAAATAAATGTCAAACAAAAAGATNAAATCAAAACCATTTCAAGTCTTGATTTTTANTTTTTTCCGGGGAGGTGTTGCTTTTAATCATATTCGCTGATTGCAAGTCTGTCATCATAACAAAATGCATGAAGTTAACCAA--ACTTT-TCAG--ATAA--------ANAAAACGCA---CATAAAAG-AAT--AGTAAA-AATG-GAAAGCNNATCTGTGTGTATGCACAGTTACTTTGTTATACATAC----GAATATA--TNTGTG-GAAA-A-TGTCATTCGTGTAAAATTGAATT
Reference ( family-1778 ) : AAGCCACGTGGCAATTTTAATGTGTACACAGACTACAGAATCTTAACTTAATGTATCAATTTCACGACAACCATCGAAGTTTACAAATGTACTNATTATAAAACATTGGTTACAATTAAAACATCTNGATGTTAAACATCAGATGCTGCTGGTTATTTAAATTATCTTG-CTCCTGTTTCACCAACATATACTTAAAAG---CC-----A--CTAAA--TCTTAGAA-AAGCAGCCAGGTGATCATGA--TTANCGACCGGTTCCAGTAAA-ACTGCACATAGTTTCACTGACGTTGATTATA-AAATAGATAAATAACCAGTCAAAA-----T----TAAG--TTTTAAG-TATT--GGTGAAATGTTTTTNTTTTTTGTTTTTTGTTTTCATTTTATTACCCACATCTTATCAAAGTTTACAACACCCCCAAACACCTCATATCCCTCCCCGCATAGCTCGAGTTTCGTCTATGGGCCTTCCGTTGACACAAAAAAACAGCATATAAAAAAGTTGATTAAATCAATTTTAATACAGAAGAAATGACAGAATGAGAAATAATAAAATAAGTGTGTGTGGGGGTNGGAGGGGTGTGTGTGTGTGTGTGTGGGGGGGGGGGGGGGGGGCTCAATTATCACGTGCACGTATAGACTTTACACATACCATGCACGTGTGTANGCCTGTGTAAACAAGATCGAGTGCNCGCAAACTTTTGGGAAAGNAAACCTTCGACAATACGTTCGGGCATATCCACACAGCTTTTTCAATATTGGTTTACATAGGCG--GATTCAAGGG--GGGCTGGG-TGCCCCA-CCCGTAAAAATCTCCCGGACATATC------A-GGTANCTGTTAATAACAACTGTGTAT---TT-AGGAGAATACAATGGTCTGAAACAA-ATATAGCATAGTAACAATGTTCATAAGTATATGGAAAATTCGCAGTATCTATCGTGGCAATATGTATTTACATGACCGAGTCAAAGGACGAAAATCAGTGAACTTTTCGTCATTCTTTGCTATTTTATTTT---CTGTTGTTTTTTCCCAA-TCATATTCCCTTATTAAAGTTCTGTCTGAAATTCATAACAAAACGTCCNTAAAATAAATGTCAAACAAAAAGATNAAATCAAAACCATTTCAAGTCTTGATTTTTANTTTTTTCCGGGGAGGTGTTGCTTTTAATCATATTCGCTGATTGCAAGTCTGTCATCATAACAAAATGCATGAAGTTAACCAA--ACTTT-TCAG--ATAA--------ANAAAACGCA---CATAAAAG-AAT--AGTAAA-AATG-GAAAGCNNATCTGTGTGTATGCACAGTTACTTTGTTATACATAC----GAATATA--TNTGTG-GAAA-A-TGTCATTCGTGTAAAATTGAATT
gi|1 : AAGCCACGTGGCAATTTTAATGTGTACACAGACTACAGAATCTTAACTTAATGTATCAATTTCACGACAGCCATCGAAGTTTACAAATGTACTAATTATAAAACATTGGTTACAATTAAAACATCTAGATGTTAAACATCAGATGCTGCTGGTTATTTAAGTTATCTTG-CACCTGTTTCACCAACAT
gi|1 : AG-TTTA--GGTGAAATGCTTTTGTTTTTTGTTTTTTGTTTTCATTTTATTACCCACATCTTATCAAAGTTTACAACACCCCCAAACACCTCATATCCCTCTCCGCATAGTTCGAGTTTCGTCTATGGGTCTTTCGTTGACACAA-----CAGCATATAAAAAA-TTGATTAAATCAATTTTAATACAGAAAAAATGACAGAATGAGAAATAATAAAATAAGTGTGTATGGGGGTGAGAGGGGTGTGTGTGTGTGTGTGTGGGGGGGGGGGGGGGGGGCTCAATTATCACATGCACGTATAGACTTTACACATACCATGCACGTGTGTAGGCCTGTGTAAACAAGATCGAGTGCCCGCAAACTTTTGGGAAAGGAAACCTTCGACAATACGTTCGGGCATATCCACA--------------TTGGTTTACATAGGCG--GATTCAAGGG--GG---------CGCAA-CCCGCAAAAATCTCC-GGACATAT-------A-GGTACTTGTTAACAACAACTGTGTAT---T--AGGAGAATACAATGGTTTGAGACAA-ATATAGCATAGTAACAATGTTCATAAGTATATGGAAAATTCGCA---------------ATATGTATTTACATGACCAAGTCAAAGGACGAAAATCAGTGAAC----CGTCATTCTTTGCTATTTTATTTT---CTGTT-TTTTTTCCCAA-TCATATTCCCTTATTAAAGTTCTGTCTGAAATTCATAACAAAACGTTCGTAAAATAAATGTCAAACAAAAAGATTAAATCAAAACCATTTCAAGTCTTGATTTTTAATTTTTTTCGGGGAGGTGTTGCTTTTAATCATATTCGCTGATTGCAAGTCTGTCATCATAACAAAATGCATGAAGTTAACCAA--ACTTT-TCAG--ATAA--------ACAAAAAGCA---CATAAAAG-AAT--AGTAAA-AATG-GAAAGCTTATCTGTGTGTATGCACAGTTACTTTGTTATACATAT----GAATATA--TGTGGG-GAAA-A-TATCATTCGTGTAAAATTGAATtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagtaaatagtttaggtgaaatgcttttgttttttgttttttgttttcattttattacccacatcttatcaaagtttacaacacccccaaacacctcatatccctctccgcatagttcgagtttcgtctatgggtctttcgttgacacaacagcatataaaaaattgattaaatcaattttaatacagaaaaaatgacagaatgagaaataataaaataagtgtgtatgggggtgagaggggtgtgtgtgtgtgtgtgtggggggggggggggggggctcaattatcacatgcacgtatagactttacacataccatgcacgtgtgtaggcctgtgtaaacaagatcgagtgcccgcaaacttttgggaaaggaaaccttcgacaatacgttcgggcatatccacattggtttacataggcggattcaagggggcgcaacccgcaaaaatctccggacatataggtacttgttaacaacaactgtgtattaggagaatacaatggtttgagacaaatatagcatagtaacaatgttcataagtatatggaaaattcgcaatatgtatttacatgaccaagtcaaaggacgaaaatcagtgaaccgtcattctttgctattttattttctgttttttttcccaatcatattcccttattaaagttctgtctgaaattcataacaaaacgttcgtaaaataaatgtcaaacaaaaagattaaatcaaaaccatttcaagtcttgatttttaatttttttcggggaggtgttgcttttaatcatattcgctgattgcaagtctgtcatcataacaaaatgcatgaagttaaccaaacttttcagataaacaaaaagcacataaaagaatagtaaaaatggaaagcttatctgtgtgtatgcacagttactttgttatacatatgaatatatgtggggaaaatatcattcgtgtaaaattgaatgaatgtataannnnnnnnnnnnnnnnnnnnnnnnnngtacatttcatatcattttattaacattccatcttcatgatttcattaagagag
gi|10 : aagccacgtggcaattttaatgtgtacacagactacagaatcttaacttaatgtatcaatttcacgacagccatcgaagtttacaaatgtactaattataaaacattggttacaattaaaacatctagatgttaaacatcagatgctgctggttatttaagttatcttgcacctgtttcaccaacattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagtaaatTAGATTATCCTG-TGGCAGCTTAACCAACATATAT---AAAT---CT-----ATTCTTAACTTCTTAAAA-ATGCTTCTAAATGACCATGA--TCATTGACTGGTTCTGATACA-GTTACACATAGTTTTACTTACATTAATTACA-ACTTGG-----TAACCAGT-AAAA-----T----gaatgtataannnnnnnnnnnnnnnnnnnnnnnnnngtacatttcatatcattttattaacattccatcttcatgatttcattaagagag
gi|11 : ATTTGAA----CTCG-C-CCTGTGTCACCAACATATACTTAAATG---CTTAAAAA--TTAAA--CCTTTGAA-AAACAGCCAGCTGGTCATAAAATTAA-GACCGGTTCCA-TAAATACTGCATATGGTTTCACTGGTGTTAATTATA-TAATAGATA
gi|12 : AACCAACTACATTATCACCTACAG--------AAAAAATACA---CATAAAAACAATCCAGTAAATAACGAGATAGCAAATCTATGTGTATCCACATACACATCGATATGCATAC----GAAAGTA--TATGTG-GAAA-A-TATTATTCTTGTA
gi|13 : aGTATGCACAGTTACTTTTCTATATATACCCATGAATATAATTATGTGTGAAATA-TGTCACTCGTGTAAAATTGAATTtataaa
gi|14 : taaatattattattattattattattaGCTGAA-TGCCCCA-CCT---AAAATCTTCTGGCCATTTT------AAGGTATCTGGCAGTAACTACTCTATTT---TTTAGGAGTCTACCATGGTCTGAAACAA-AAATATCATTGTAATAATGTACAGAAATAaatgtatgacttacatgtaata
gi|15 : ATGGGCGTGGATTCAATGG--GGGCTGGGGTGCCCC----CGTACACCTCTCCCAAATCTATCTGTCATA-GGTTACTGCCAATAACAACTGTATATTAATT-AAGACAATACAGTGACCTGAAAC
gi|16 : tTCAAAT-ATTTTGGCTCTTGATTCACCAGTATATACTTAAAA-----C-----A-------------AGGATAAGCAGCCAGGTGATCATGA------CAA---GTTCTAGTAAA-
gi|18 : AAACCACGTGGCAATTTTAATATGTACACAGACTACAGACTGTTAACAAAATGTATCATTATCACGACAACCATCGAGG
gi|19 : AATAAATAAACAACCAATCAAAATTTAGT----TAAG--TTTTAAG-TATTAAAGTAAAATGTT
gi|2 : acatAAGCCACGTGTCAATTTTACTGTGTACACAGACTACAGAATCTTAACTTAATGTATCAATTTCACGACAACCATCGAAGTTTACAAATGTACTCATTATAAAACATTGGTTACAATTAAAACATCTCGATGTTAAACATCAGATGCTGCTAGTTATTTAAATTATCTTG-CTCCTCTTTCACCAACATATGCTTAAAAAGACCC-----A--CTAAAA-TCTTAGAA-AAGCAGCCAGGTGAGCATGA--TTGACGACTGGTTCCAGTAAA-ACTGCACATAGCTTCATTGATTTTGATTTTA-AACTAGATTAAAAACCAGATAAAA-----T----TAAG--TT--AAG-TATTTAGGTGAAGTGTTTTTCT------------------ATTTTATTACCCACATCTTATCAAAGTTTACAACACCCC-AAACACCTCATATCCCTCCCCACATAGCT-GAGTTTCGTCTATGGGCCTTCCGTTGACACAAAAAAACAGCATATAAAAAAGTTGATTAAATCAATTTTAATACAGAAGAAATGACAGAATGAGAAATAATAAAATAAGTGTGTGTG----TTGGAGGGG-----------------GGGAGGGGGGGGGGGGGGCTCAATTATCACGTGCACGTATAAACTTTACACATACCATGCACGTGTGTACGCCTGTGTAAACAAGATCGAGTGCACGCAAACTTTTGGGAAAGTAAACCTTCGACAATACGTTCGGGCATATCCACACAGCTTTTTCAATATTGGTTTACATAGGCG--GATTCAAGGGTCGGGCTTGG-TGCCCCAACCCGTAAAAATCTCC-GGACATATC------A-G-TAATTGTTAACAACAACTGTGTAT---T--AGGAGAATACAACGGTTTGAGACAA-ATGTAGCATAGTAACAATGTTCATAAGTATATGGAAAATTCGCAGTATCTATCGTGGCAATATGTATTTGCATGACCAAGTCAAAGGACGAAAATCAGTGAACTTTTCGTCATTCTTTGCTATTTTATTTT---CTGTTGTTTTTTCCCAAATCATATTCCCTTATTAAAGTTCTGTCTGAAATTCATAACAAAACGTCCCTAAAATAAATGT-AAA-AAAAAGATAAAATCAAAACCATTTCAAGTCTTGATTTTTATTTTTTTCCAGGGAGGTGTTGCTTTTAATCATATTCGCTGATTGCAAGTCTGTCATCATAACAAAATGCATGAAGTAAACCAA--ACTTT-TCAG--ATAA--------ACAAAACGCA---CATAAAAG-AAT--AGTAAA-AATG-GAAAGCTTATCTGTGTGTATGCACAGTTACTTTGTTATACATAC----GAATATA--TTTGGG-GAAA-A-TATCTTTCGTGTAAAATTGAATTgctgaaatagaagacaga
gi|20 : TGATTATA-AA-TAAATAAATAATCAGTCTAAA-----T----TAAG--TTTTAAATTGTT--GGTGAAA
gi|21 : gttatttttatacCAGTCAAAACTTAAT----TAAG--TTTTAAG-TATT--cataagccaag
gi|22 : TATATACATAAACAAATAACCAATCAAAA-----T----TGAG----TTAAA-TGTT--GATGAAAtcagtaaatttggtgaaacagatgcctggt
gi|3 : AAAATGCATGAATTTAACGAA--ACTTT-TAAG--ATAAGAATTTTAAAAAAATCCAGCTTATAAATA-AAT--AGCAAA-AATG-GAAAGTAAATCTGTTTTCATACATAGTTACTTTGCTATACATAT----GAATATA--TTTGTG-AAAA-ATTGTCATTC-TGTAATATTGcagaaacca
gi|4 : ACAGTTACGTTTTTATACCTAT----GAATGTA--TATGTG-AAAA-A-TGTTATTCGTGTGAAATTGAATTttagctctatagcaagactatctagatattccggcatgcttgataaaaaaaactactcccgcccagagagatccagaggatattaaagataatcagtaaccaacacacacaactttgtatcttattaaattccaggatttataatagattacattagccctccaaaacaatataattcgtgtaaaattgaattaatgtagaactcaaaccccc
gi|6 : tttcattgatagactacaagtaaatacaattttaaaataaacatctttatttttttgcttgataCTGTTAATAACAATTGTGTA------------------ATAGTCTGAAACAAGATATAGTATAGTAACACTGTTCATAAGTATATGGGAAATTTGCAGTATCTATCATGGCAATATGTATTTACATGTCGGATTCAAGGGACGTAAATCAGTGAACTTTTCGTCAGTCTTTGCTATTTTATTTCATGTTGTTGTTTTTTCTCAA-TCATATTCCCTGATTAAAGTTCTGTCTGAAaatgtatagctcaatcttatatcgtctcttattcctctatctccttttctctctctttctctctatattgttgtgttaaaattccatgttcataatctctttaagaga
gi|9 : A--TCTAAGAA-A-GCAGCCAGGTGATCATGC--TTTTAGACAGGTTCCAGTAAA-ACTGTATATTGTTT-------ATTGATTATA-TAATAAATAAATAACCAGTCAAAA-----CTTAGTAAGGTTTTTAAG-TATT--GGTGAAA
gi|9 : cttaccaacttctACCTGG-CTTCTGTTTCACCA----ATACTTAAAAA---CCTT---A--CTAAG--TTTTcagaagccaggt
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): ATATGTTATATATATTTAACTTGTCTGTTATATAACATTTTGTTAAGATTACNNNNNNNNNNATATATATATATATGTATATTCCAGCATGATTAATAAAAAAACTGCTTCTGCCCAGAGAGAGCCAGAGAATAAAATAATCAGTAAACAACACACAAGATTTTGTATCTTGTTTAAATCCAGGATTTTTAATAGATTACAAAAGTCATCCAAACAATACA
Unaligned ( gi|7 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAATATCCTTAATGGAGAGAATATATAAGACCAGATTAATAACATTTTAGACGTGTAATACCTATATTTGTATGAATCCATATTAATCAAGATCTATATGATAAAAAATCATCCCAACTTCAAATGAAATAAAATTCTGGCAAAATATTGATTTGAACAAAAACTTCTA
Unaligned ( gi|8 ): TAATTTGTTAGCAAATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCAGCATGCTTGATAAAAAAACTACTTACGCTTAGAGAGAGCCGGAGAATAAAAAAATCAGTAACCAACACACAAGGCTTTGTATTTTATTAAATTCCAGGATTTATAATAGATTACAAAAGCCACCCAAAACAATA
Unaligned ( gi|17 ): TAACAACTTTAATCTTAATGAAGTTTCAAGGTGATAATGTTGTTAGACAGGATCTATTGCAAGTGCATATTATATTATAAAT