lowQualScore : 1 1 1 666666666666666666666666666666666666666666666666666666 11 77777777777777777777777777777777777777777777777777777777777777777777777 11111 11111111 222222222 5555555555 1 1 444444444444444444444444444444444444444444444444444444444444444444 222222222222 222 55 2
lowQualScore : 5 4 2 0 0 7 6 333333333333333333333333333333333333333333333333333333 3 3 00 55 3 88888888888888888888888888888888888888888888888888888888888888888888888 44 77777 2 2 2 00000000 77777 000000000 3 33 2222222222 555 5 4 6 3 11 3 0 6 6 555 555 2222 3 2 1 8888 8888 555555555555555555555555555555555555555555555555555555555555555555 3 222222222222 8 444 0 7 2 77 4 0
lowQualScore : . . . . . . . ...................................................... . . .. .. . ....................................................................... .. ..... . . . ........ ..... ......... . .. .......... ... . . . . .. . . . . ... ... .... . . . .... .... .................................................................. . ............ . ... . . . .. . .
lowQualScore : 0 0 5 4 5 0 0 666666666666666666666666666666666666666666666666666666 6 6 00 00 6 77777777777777777777777777777777777777777777777777777777777777777777777 33 00000 9 9 9 44444444 11111 444444444 3 99 1111111111 000 7 5 8 5 88 8 5 9 2 000 000 8888 7 3 8 5555 5555 555555555555555555555555555555555555555555555555555555555555555555 2 888888888888 3 000 1 8 5 00 0 0
consensus : TCTAAATGAAAAAGAAAACGGTCATATGTTCTTAGAAGTACAAAAGTTTATTAAAAACTCNAAACGTTTCAGTCATAATTAGTTTCAA--------A-T--------------A-NT--TC-A-------------T-----GTCCCTAGATGTTA-ATATGAGACTCGG-G--C--G-GAATCAT----------A--TGGGGT-----G--T-GT-------------------------TA---T-C---C--TTTTT-GGG-GG--T-GCAGACAA-TA-ATA--------AC-----TCTTC-TA--TCTTTTTTTTAT--ATTGTCATTTTCTTT-TAATTCTTT---TT-TTTTCTATAGTTTATTAATATGTTTATATACTTTGTTTTTCTTTAAAACATTAT---TATA---ATCACTAAAATTCAAGCAAAATANTTACTGCTTTTTCTT----TG----CGTGCGTG----T-----GTGCGTGCGTGCGCGTGCGCGCGCGAGTGCACGTG-NG-CGTGT------------TTGTATGCGTGTGG------------AAGAGAGTGATATGCTTGTTCGAAA--GTATATGTATNTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATGTAAAAT-TTGCAATAAAATATTATTNAATATAAA
Reference ( gi|3 ) : TCTACATGAAAAAGAAAACGGTCACATGTTCTTAGAAGTACAAAAGTTTATTAAAAACTCGAAACGTTTCAGTCATATTTGGTTTCAA--------A-A--------------A-GT--TT-A-------------T-----GTCCCTAGATGTTA-ATATGAGACTCGG-G--C--G-GAATCA-----------A--TGGGGT-----A--T-GT-------------------------TA---T-C---T--TTTTT-GGG-AG--T-GCAGACAA-TA-ATA--------AC-----TCTTC-TA--TCTTTTTTTTAT--ATTGTCATTTTCTTTCTAATTATTT---TT-TTCTCTACAGTTTATTAATATGTTTATATATTTTGTTTTTCTTTCAAACACTAT---TATA---ATCACTAAAATTCAAGCAAAATATTTACTGCTTTTTCTT----TG----CATGTGTG----T-----GTGCGCGTGCGCGGGTGTGCGTGCGAGTGCAAGTG-AC-CGTGC------------TTGTATGCGTGTAG------------AAGTGAGTGATATGCTTGTTCGAAA--TTATATGCATGTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAACACATGTAAAAAATTGCAATAAAATATTATTAAAT-TAAAACTAACATATA
gi|8 : TCTAAATGAAAAAGAAAACGGTCATATGTTCTTAGAAGTACAGAAGTTTATTAAAAACTCTAAACGTTTCAGTCATAATTAGTGTCAA--------A-T--------------A-TT--TC-A-------------T-----GTCCCTAGATGTTA-ATATGAGACTCAG-G--C--G-GAATC------------A--TGGGG------G--T-GA-------------------------TA---T-C---C--TTTTT-GGG-GG--T-GCAGACAA-TA-CTA--------AC-----TCTTA-TACCTCTTTTCTTTTTTGATAGTCATTT------------TTT---TT-TTTTCTATAGTTTATCAATATGTGTATATACTTTGTTTTT-TTTAAAAAAC-ATAAGTATA---ATCACTAAAATTCAAGTAAAAAAATTACTGCTTTTTCTT----TG----CANNNNNN----N-----NNNNNNNNNNNNNNNNNNNNNNNNNAGTGCAAGTG-AG-CGTGC------------TTGTATGCATGTAG------------AAGTGAGCGATATGCTTGTTCGAAA------ATGTATGTGT
gi|13 : TCTAAATGAAAAAGAAAACGGCCATATGTTCTTAGAAGTACAAAATTTTATTAAAAACTCTAAACGTTTCATTCATAATAAGTTTCAA--------A-T--------------A-TT--TC-A-------------T-----ATATCTAGATGTTA-ATATGAGACTCGG-A--C--G-GAAGCATGAGGGGGTGAG--TGGGGT-----GGCT-GT-------------------------TA---T-C---C--TTTTT-TAG-GG--T-GCAGACAA-TA-A----------AC-----TCTTT-TA--CCTTTTTTT-AT--ATTGTCATTTTCTTT-TAATTCTTT---TT-TTTTCTATAGTTTATTCAAATGTTTTTATAACTTGTTTTTCTTTAAAACATTAT---TATA---ATCACTAAAATTCAAGATATATATTTACTGCTTTTTttg
gi|10 : aaataaaaaTCTAAATGAAAAATAAAACGGCCATGTATTCTTAGAAGTACAAAAGTTTATTAAAAACTCAAAAAGTTTCAGTCATAATTAGTTTAAA--------A-AT-------------A-GT--TC-A-------------T-----GTCCCTATATGTTATATTT---ACTCGGTG--T--GTGTATTA-----------ACTCGGTGT-----G--T-GTGTGGAGGGGGGGGGGGGGGGGGGGTTA---TCC---C--TTTTT-GG---G--T-GCACACAA-TA-ATA--------AC-----ACTTC-TA--TATTTTT----T--ATTGTCATTTTCTTT-TAATTCTTT---TT-TCCTAT-CA-TTTATTAATATGTTAATATA--CAGTTTTTCTTTAAAACATTAT---TATA---ATCACTAAAATTAAAGCAAAATATTTACTGCTTTTTCTT----TG----CATGTGTG----C-----GTGCGTGCTTACGTGTGTACGCGCGAGTG
gi|14 : taaaaTCTAAATGAAAAAGAAAACGGCCATATGTTCTTAGAAGTTCAAAATTTTATTAAAATCTCAACACGTTTCACTCATAATAAGTTTCAA--------A-T--------------A-TT--TC-A-------------T-----ATCTCTAGATGTTT-ATATGAGACTCGG-A--C--G-GAAGCATGAGGG-----G--TGGGGTGGGGGG--T-GT-------------------------TA---T-CCTTT--TTTTT-GG---G--T-GCAGACAA-TA---A--------AC-----TCTTT-TA--CC--TTTTTTAT--ATTGTCATTTTC-----------TT---TT-TTTTCTATAGTTTATTCAAATGTTTTTATAACTTATTTTTCTTTAAAACATTAT---TATA---ATCACTAAAATTCA
gi|15 : cgagttgttatttggaaataaaaaTCCAAATGAAAGAGAAAAGGCTCACGTGTTCTTAGAAGTACAAAAGTTCATT-AAAACTCAAAACTTTTCAATCATAATTAGTTTTAA--------ATAACCATTAACGTTATA-GT--TC-C-------------T-----GTCCGTGGACGTTA-GTATAAGG---GG-G--C--G-GAA-CA-----------A--TGGGGT-----G--T-G---------------------------G---T-C---C--TTTTT-GGG--T--T-GCAGACAA-TA-ATAAAAAAAATAC-----TCT---TA-----TTTTTTTAT--ATTTTCATTTTTT-----ATTCTTT---CT-CTTTCTACAATTTAT---TATCTT----TACTTGGATTTTCTTTAAGTCATTAT---TATA---ATCATTCAAc
gi|2 : aagttgttatttgacaacacaaagATGAAGAAGCAAATTGTCATATGCCATTGGAAGTACAAAAGTTTATCAAAAACTCAAAACGTTTATGTCATAATTAGATTCAA--------A-T--------------A-TT--TC-A-------------T-----GTCCCTAGAACTTA-ATATGAGACTGGG-A--C--G-AAGTCAT----------G--TGGGGC-----T--T-GT-------------------------GA---T-C---C--TTTTTAAGG-GG--TAGCAGACAA-TA-ATA--------AC-----TCTTA-TA--TC-TTTTTTTAT--ATTGTCATTATTT-----ATTCTTA---TT-TTCT-TA-AGTTTATTGATATGTTTATATACTTTGTTGTTCTTT--AACATTAT---TATA---ATCACTAAAATTCAAACAGAATATTTACTACTACTT-TT----TG----CATACGTG----T-----GTCT----------ATGTGCATGCTCATGCACATG-AG-CGTGT------------TTGTATGCGTGTGG------------AAGAGAGCGATATGTTTGTTCGAAAGTTTGTGTGtt
gi|1 : atcgaaAAAAAGTAAACGCTCATTTGTTCATGAAAGTTCAAAAGTTCATTAAAG------------TCAGTCACAATTAGTTTCAATTAATCATA-A--------------ACGT--TTGA-------------TTTGCGGTCCCAAGATGTTG-ATATGAGATTTGG-G--CGGG-GGATC------------A--TGAGG------A--G-GG-------------------------GG---T-C---C--GTTTT--GG-AT--T-GCAGACAA-TG-ATA--------ACTAAAATTTTCGTA--T-TTTCTTTTAT------TCATTCTC-----A-------------TTCCCTATAGTCTAT---TCTCTTTA-A---TTGGATTTTCTTTAAATCGTTAT---AATT---ATCACCTAACTTGTAGCATAACAATTACTCCTATTTCGT----AG----CGTATGTGTATTT-----GTTTGTGTGTGCGCGTGTACGCGCAAGTGCttcgattgtattgctaaaccttcgtcactttaatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaacatgtaaaatttgcagtaaaatactattgaaatatcaaattatctttaaatgtctgattcggaattgctccaccggattcagcccatttatggctgcggagaagg
gi|9 : aagcggttattaaggaacactaaaccaGGTCATATGTTCTTAGAAGTACAAAC-TTTATTAAAAACTCTTAATGTTTCAGTCATAATAAGATTGAA--------A-T--------------A-GT--TC-A-------------T-----GTCCTTAGATGTCA-ATATGAGACTCGG-G--C--G-GAATCA--------------TGGGGG-----A--T-GT-------------------------TA---T-C---CAATTTGA-GGG-AGGGT-GCAGACAA-TT-ATA--------AC-----TCTTC-T---TCCCTTTTTTAT--GTTGTCATTTTCTTT-TCATTCTTTCTTTT-TTTTCTATAGTTTATTAATATGTTTATATACTT-GTTTTTCTTCAAAACAGTAT---TATA---ATCAATAAAAT---------------ATTGCTTTTTCTT----NN----NNNNNNNN----N-----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NN-NNNNN------------NNNNNNNNNNNNNNNNNNNNNNNNNAAAGTGAGTAATATGCTTGTTCGAAAG-TTA-ATGTGTTTGTgtttgtgttcgaacgtattatgtttttatttttttatttgcaataatatcgtcaccttaatttgtatgatgcaatttgacttgtcaggaagggctgtaactaatattgttgaccgacctttttgaacttcgttcattaattatcctacaaattgatgtattgaatatgtaaaatgtgcaataaaatattttttaattaaattagctacactacatattaaatacaataattatgataaaatataaaaatattatttcacaaaatataa
gi|17 : CAGTCATAATTAATTTCAA--------T-T--------------A-ATCATT-AACACTAGATTCCCT-----GTCCCTGCATATTT-ATATGATGCTTAG-GGAC--G-GGATCATA---------G--TCGGGT-----------T-------------------------TAGGGT-C---C--TTTT---GG-AGGTT-GCAGACAAATGGATA--------GT-----TCTT-----------TTGTTAT--ATCTTTGTTTTCATTCTTTATATTT---TT-TT---TAT-GTTTACTttgt
gi|19 : -------------T-----GTCTCGAAGTGTTG-ATAGGACATTTGG-GGGC--A-GAATCAT----------A--TGGTGT-----G--GAGT-------------------------T------C---T--TATTT-AGG--T--T-GCAAACAA-TA-ATA--------AC-----TCTTC----------TTTTAAT--ATTG----TTTCTTTTT--TCACTC---TCATTCTCTttcttcattcaaattctagcagaataatttctcttatttccttgcgt
gi|4 : gtttcaattaattagaatgtttgattcccGTTA-CAATTATACACGG-G--C--G-GAATCATT---------A--GGGGGA-----G--G-GG-------------------------TA---T-C---C--TTTTT-GGGGAG--T-GCAGACAA-TA-GTA--------AC-----TTTTC-TA--TCATTTTTTTAT--ATTGTCATATT-TTTAAAAAAAT-----------TCTATAGTTTATTAATATG---------TTTGTTTTTCTTTAAAACATTTT---TATA---AT------------------ATGTTT--TACTTTTTCTT----TG----CGTATATA----TAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NCTCGTGCGAGTGAGCGTGTTTGTATGCGTGCGG------------AAGAGAGTGATATGCTTATTCGAAA--GTATACGgtaatc
gi|6 : catatacattaaTTT-GAG-GT--T-GCAGACGG-TA-ATA--------AA-----ACTTC--G--T-TTTTTTCTAT--ATTATTATTT--------GTTATTC---TCGTTTTCTATAGTTTATTGATATGTTTAC----TTTGTTTTTCTTTAAATCAGTGC---TTCA---ATCACTAAAATTCAAGCAAAAAAGTTACTCCTATTACTT----TG----CATACGTT----T-----ATGTGTGTGCCTGCATGCTCGCGCG--TGCGTGTG-A---GTGT------------TTGTTTGCGTATGG------------AAGAGATTGGTATGCTTGTTCAAGG--GTATACAAATGTGTtgttcgtttgtattgcaaaactatcatcactttaatttgtatgtgcattttgacgcattggggacggctttaactaattgtttaaacttgtagcgcgaaccttttgcattttattcgttatttgtgctacaaactgatattttgcaataaaatattagtaaattaaaaacatgtatacgataatttccaggtatatttccgatacgttataccacatatatgtattgatataccgt
gi|5 : G--T-GCAGACAA-TA-A----------AC-----TCTTT-TA--CCTTTTTTT-AT--ATTGTCATTTTCTTT-TAATTCTTT---TT-TTTTCTATAGTTTATTCAAATGTTTTTATAACTTGTTTTTCTTTAAAACATTAT---TATA---ATCACTAAAATTCAAGATATATATTTACTGCTTTTTCttgttttgctaaaatattgtcacattaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgttttgagcatgtcaaatgtgctataaaatattattgagtcttaataaat
gi|7 : --T-GCAGACAA-TA-GTA--------AC-----TGTTC-TA--CCTTTTT---AT--ATTGTCGTTATCTT-ATAATTCTTT---TT-TTTTCTAATGTTTATTACTATGTTTATATACCTTGTTTTTCTTTAAAACATTAT---TATA---ATCACTGAAATTCAAGTAATCTGTTTACTACTTTTTCTTANNNNN----NNNNNNNN----N-----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NN-NNNNN------------NNNNNNNNNNNNNG------------AAGTGAGTGATATGCTTGTTCGAAA--GTATATGTGTTTGTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgttactggtgttacaaattgatgttttgaacatgtaaaatttgcaataaaatattatttaattaaacc
gi|18 : agaTGATTTTCTTTGAATTATTAT---TACATGTAT-ATTTAA-CTCTAGCGAAATAATTACTCCTATTTCTT----TG------TGCATG----C-----TTGCACAT----------------------AAATGTTT-CGTGT------------TTGTTTATGTTTGG------------AAGAAAGTGATATGTTTGTtcgtatatcaaaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttcgttattggtgttacaaattgatgttttgaacatgtaaaatttgcaataaaatattattaaatataaata
gi|12 : T---TA-A---ATCACTAAAATTCAAGCAGAATAATAACTCCTATTTCTT----TGCATACATGTATA----T-----GTGTGTGCGTGCAAACTCGCGTGC--CTGCATGT------GTAT------------TTGAATGCGTGTGG------------AAGAGAGTAATATGCATGAT-GAAG--GTATATGTATgcatataacaaacaaattgaatatttactaaaa
gi|11 : actttcaagtttataacataactataaagatttttggttgttgcgtatgaattgattttctTGTGAATACACGTG-TG-CGTGT------------TTGTACGCGTGTGG------------TAGAAAATGATATGCTTGCTCGAAA--GTATATGcagtaatcgtcactttaatgtgtatacgcataatgacgcattgtggaagtatgtaactaatgttgttaaaattgtagtccaacaattttccattttattcgttatttatgctacaaaataatgtgttgaaca
gi|7 : atatgcgtttgtttgcaaaACATGTAAAAT-TTGCAATAAAATATTATTAAATATAAAacttcgtttgtattgcaagaatatcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgttatttgtgctacaaactgatgttttgaacaatcgtcatgtacaatttgcaatggaatattattcaattaaacatataatggcttttattacacacgcctatcatcataacatacatataagtacattcaa
gi|5 : agatgcagacaatagtaactgttctacctttttatattgtcgttatcttataattctttttttttctaatgtttattactatgtttatataccttgtttttctttaaaacattattataatcactgaaattcaagtaatctgtttactactttttcttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaagtgagtgatatgcttgttcgaaagtatatgtgtttgttcgtatatcaaaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttcgttattggtgttacaaattgatgttttgaACATGTAAAAT-TTGCAATAAAATATTATTTAAT-TAAAta
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): ATATATGTATTGTCATTTTAATTTGTACATGCATTTAGACGCGTCGGAGAGGGCTGTAACTACTGTTGTAAATCTAACAGCCCCATCTTTTTGTATGTTATTCATATTGATGCTACAATTAGATGTTTTGAACATATTTTGCAATAGAATATTATAAAACAAAAATGACATTAATGGTTTAAATGTGAACATTGTTCTGCAGATAGATATAAATATTTTAATTTGAAAATTTGAT
Unaligned ( gi|20 ): AAATTGTATATGTATTCTGAAGCACTGAGGAGGATTGTAACTAATGCTGTAACAACGTGTTGCTCGATCCTTTTGTATTTTATCTGTTTTACTTTTTGCCAAA
Unaligned ( gi|21 ): GTTTTGAACATGTAAAATTTGCAATAAAATATTGTTGAATTTAAATATTAATTTCTTTTAGATCTACTTAAAAATCTCTCC
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111111 3333333333333333333333333333333333333333333333333333 11 3333333333333 111111111 111111 1111111 111111 222222222222222222222 1111111111 222222222222 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 22222
lowQualScore : 5 1 4 2 0 3 000000 1111111111111111111111111111111111111111111111111111 3 00 55 3333333333333 666666666 5 555 3 222222 77 2 2 33 99999999 66666 4444444 777777 44444444 777777 0 4 0 22 33 2 444 0 0 2 1 1 7777 3 222222222222222222222 666 0 9999999 1111111111 1 000000000000 1 9999 2 1 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 5 66 77777
lowQualScore : . . . . . . ...... .................................................... . .. .. ............. ......... . ... . ...... .. . . .. ........ ..... ....... ...... ........ ...... . . . .. .. . ... . . . . . .... . ..................... ... . ....... .......... . ............ . .... . . .................................................................................................................................................... . .. .....
lowQualScore : 0 1 8 6 2 6 555555 6666666666666666666666666666666666666666666666666666 3 00 00 0000000000000 333333333 3 888 3 444444 11 7 7 88 77777777 77777 3333333 444444 88888888 111111 7 2 3 22 77 8 777 2 7 1 4 0 7777 0 222222222222222222222 000 3 2222222 9999999999 0 555555555555 4 4444 2 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7 77 99999
consensus : TCTAAAT-GAAAAAGAAAACGGTCATATGTTCTTAGAAGTACAAAAGTTTATTAAAAACTCNAAACGTTTCAGTCATAATTAGTTT-CAA------AT---------AN---------------TT-----CAT----------------GTCCCTAGATGTTA-ATATGAGACTCGGG--C--GGAATCAT----------A-TGGGGT-----G--TGTTA---TCC-TTTTT----G-GGG-GT-GCAGACAA-TA-ATAA--------C-----TCTTC-TATCTTTTTTTTATATTGTCATTTTCTTT-TAATTCT---TT---TTTT-----TTCTATAGTTTATTAATATGTTTATATACTTTGTTTTTCTTT--AAAACATTATTATA---ATCACTAAAATTCAAGCAAAATATTTACTGCTTTTTCTT----TGCAT------------ACGTG----TGTGCGTGCGTGCGCGTGCACGCGCGAGTGCACGT------GNGCGTGTTTGTATGCGTGTGG------------AAGAGAGTGATATGCTTGTTCGAAAGTAT----ATGTGTTCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAACACATGT-AAAATTTGCAATAAAATATTATT-NAAT----ATAAA
Reference ( family-1588 ) : TCTAAAT-GAAAAAGAAAACGGTCATATGTTCTTAGAAGTACAAAAGTTTATTAAAAACTCNAAACGTTTCAGTCATAATTAGTTT-CAA------AT---------AN---------------TT-----CAT----------------GTCCCTAGATGTTA-ATATGAGACTCGGG--C--GGAATCAT----------A-TGGGGT-----G--TGTTA---TCC-TTTTT----G-GGG-GT-GCAGACAA-TA-ATAA--------C-----TCTTC-TATCTTTTTTTTATATTGTCATTTTCTTT-TAATTCT---TT---TTTT-----TTCTATAGTTTATTAATATGTTTATATACTTTGTTTTTCTTT--AAAACATTATTATA---ATCACTAAAATTCAAGCAAAATANTTACTGCTTTTTCTT----TGCGT------------GCGTG----TGTGCGTGCGTGCGCGTGCGCGCGCGAGTGCACGT------GNGCGTGTTTGTATGCGTGTGG------------AAGAGAGTGATATGCTTGTTCGAAAGTAT----ATGTATNTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATGT-AAAATTTGCAATAAAATATTATT-NAAT----ATAAA
gi|1 : CTAAACCAAAAAAGTAAACGCTCATTTGTTCATGAAAGTTCAAAAGTTCATTAAAG------------TCAGTCACAATTAGTTT-CAA------TT---------AA----------------T-----CATAAACGTTTGATTTGCGGTCCCAAGATGTTG-ATATGAGATTTGGG--CGGGGGATCAT----------G-AGGAGG-----G--GG------TCC-GTTTT------GGA-TT-GCAGACAA-TG-ATAA--------CTAAAATTTTCGTAT-TTTCTTTTAT----TCATTCTC------ATTC-------------------CCTATAGTCTAT---TCTCTTTA-A---TTGGATTTTCTTT--AAATCGTTATAATT---ATCACCTAACTTGTAGCATAACAATTACTCCTATTTCGT----AGCGT------------ATGTGTATTTGTTTGTGTGTGCGCGTGTACGCGCAAGTGCGTTT------GTG
gi|10 : aagcggttattaaggaacaTCTAAAT-GAAAAATAAAACGGCCATGTATTCTTAGAAGTACAAAAGTTTATTAAAAACTCAAAAAGTTTCAGTCATAATTAGTTTAAAA------AT---------AG---------------TT-----CAT----------------GTCCCTATATGTTATATTT---ACTCGGttcgaacgtattatgtttttatttttttatttgcaataatatcgtcaccttaatttgtatgatgcaatttgacttgtcaggaagggctgtaactaatattgttgaccgacctttttgaacttcgttcattaattatcctacaaattgatgtattgaatatgtaaaatgtgcaataaaatattttttaattaaattagctacactacatattaaatacaataattatgataaaatataaaaatattatttcacaaaatataa
gi|10 : taaaaGGGGG-----G--GGTTA---TCC-CTTTT----T-GGG--T-GCACACAA-TA-ATAA--------C-----ACTTC-TATATTTTTT----ATTGTCATTTTCTTT-TAATTCT---TT---TTTC-------CTATCATTTATTAATATGTTAATATACA--GTTTTTCTTT--AAAACATTATTATA---ATCACTAAAATTAAAGCAAAATATTTACTGCTTTTTCTT----TGCAT------------GTGTG----CGTGCGTGCTTACGTGTGTACGCGCGAGTGtgtgtgtattaactcggtgtgtgtgtggagggggggggggggggggggttatccctttttgggtgcacacaataataacacttctatattttttattgtcattttcttttaattcttttttcctatcatttattaatatgttaatatacagtttttctttaaaacattattataatcactaaaattaaagcaaaatatttactgctttttctttgcatgtgtgcgtgcgtgcttacgtgtgtacgcgcgagtg
gi|11 : taaaatctaaatgaaaaataaaacggccatgtattcttagaagtacaaaagtttattaaaaactcaaaaagtttcagtcataattagtttaaaaatagttcatgtccctatatgttatatttactcggtgtgtgtattaactcggtgtgtgtgtggagggggggggggTGCGTTTGTTTGCAAATGTGAATACACGT------GTGCGTGTTTGTACGCGTGTGG------------TAGAAAATGATATGCTTGCTCGAAAGTAT----ATG
gi|11 : ataCATGT-ACAATTTGCAATGGAATATTATT-CAAT-----TAAAacttcgtttgtattgcaagaatatcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgttatttgtgctacaaactgatgttttgaacaatcgtcatgtacaatttgcaatggaatattattcaattaaacatataatggcttttattacacacgcctatcatcataacatacatataagtacattcaa
gi|12 : atatgcgtttgtttgcaaatgtgaatacacgtgtgcgtgtttgtacgcgtgtggtagaaaatgatatgcttgctcgaaagtatatgacttcgtttgtattgcaagaatatcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgttatttgtgctacaaactgatgttttgaacaatcgtTTGATTTTCTTT--AAA---------------TCACTAAAATTCAAGCAGAATAATAACTCCTATTTCTT----TGCAT------------ACATG----TAT--ATGTGTGTGCGTGCAAACTCGCGTGCCTGC------ATGTGTATTTGAATGCGTGTGG------------AAGAGAGTAATATGCATGAT-GAAGGTAT----ATGTATCAGTcatataatggcttttattacacacgcctatcatcataacatacatataagtacattcaa
gi|13 : actttcaagtttataacataactataaagatttttggttgttgcgtatgaaTCTAAAT-GAAAAAGAAAACGGCCATATGTTCTTAGAAGTACAAAATTTTATTAAAAACTCTAAACGTTTCATTCATAATAAGTTT-CAA------AT---------AT---------------TT-----CAT----------------ATATCTAGATGTTA-ATATGAGACTCGGA--C--GGAAGCATGAGGGGGTGAG-TGGGGT-----GGCTGTTA---TCC-TTTTT----T-AGG-GT-GCAGACAA-TA---AA--------C-----TCTTT-TA-CCTTTTTTTATATTGTCATTTTCTTT-TAATTCT---TT---TTTT-----TTCTATAGTTTATTCAAATGTTTTTATAACTTGTTTTTCTTT--AAAACATTATTATA---ATCACTAAAATTCAAGATATATATTTACTGCTTTTTaatcgtcactttaatgtgtatacgcataatgacgcattgtggaagtatgtaactaatgttgttaaaattgtagtccaacaattttccattttattcgttatttatgctacaaaataatgtgttgaaca
gi|14 : aaataaaaaTCTAAAT-GAAAAAGAAAACGGCCATATGTTCTTAGAAGTTCAAAATTTTATTAAAATCTCAACACGTTTCACTCATAATAAGTTT-CAA------AT---------AT---------------TT-----CAT----------------ATCTCTAGATGTTT-ATATGAGACTCGGA--C--GGAAGCATGAGGG-----G-TGGGGTGGGGGG--TGTTA---TCCTTTTTT----T-TGG-GT-GCAGACAA-TA---AA--------C-----TCTTT-TACC--TTTTTTATATTGTCATTTTC--------------TT---TTTT-----TTCTATAGTTTATTCAAATGTTTTTATAACTTATTTTTCTTT--AAAACATTATTATA---ATCACTAAAATTCA
gi|15 : cgagttgttatttggaaataaaaaTCCAAAT-GAAAGAGAAAAGGCTCACGTGTTCTTAGAAGTACAAAAGTTCATTAAAA-CTCAAAACTTTTCAATCATAATTAGTTT-TAA------AT---------AACCATTAACGTTATAGTT-----CCT----------------GTCCGTGGACGTTA-GTATAAGG---GGG--C--GGAA-CA-----------A-TGGGGT-----G--TG--G---TCC-TTTTT----G-GGT--T-GCAGACAA-TA-ATAAAAAAAATAC-----TCTT---AT---TTTTTTATATTTTCATTTTTT-----ATTCT---TT---CTCT-----TTCTACAATTTATTA---TCTTTA----CTTGGATTTTCTTT--AAGTCATTATTATA---ATCATTCAAc
gi|17 : aagttgttatttgacaacacaaagCAGTCATAATTAATTT-CAATTAATCATTAACACTAGAT---------------TC-----CCT----------------GTCCCTGCATATTT-ATATGATGCTTAGGGAC--GGGATCAT----------AGTCGGGT----------TTAGGGTCC-TTTTG----G-AGG-TT-GCAGACAAATGGATAG--------T-----TCTT---------TTGTTATATC-----TTTGTTT-TCATTCT---TTATATTTT-----TTTTAT-GTTTACTtt
gi|18 : TGATTTTCTTT--GAATTATTATTACATGTAT-ATTTAA-CTCTAGCGAAATAATTACTCCTATTTCTT------------------------------TGTGCATGCTTGCACAT--------AAATGT-----------TTCGTGTTTGTTTATGTTTGG------------AAGAAAGTGATATGTTTGTttcttcattcaaattctagcagaataatttctcttatttccttgcgt
gi|19 : GTTTCAAT--TAATTAG------A------AT---------GT---------------TTGATTCCCT----------------GTCTCGAAGTGTTG-ATAGGACATTTGGGGGC--AGAATCAT----------A-TGG--T-----G--TGGAG---TTC-TTATT----T-AGG-TT-GCAAACAA-TA-ATAA--------C-----TCTTC--------TTTTAATATTGT--TTCTTTTT-TCACTCT---CA---TTCT-----CTGTAgcatataacaaacaaattgaatatttactaaaa
gi|2 : TCGAAAT-GAAGAAGCAAATTGTCATATGCCATTGGAAGTACAAAAGTTTATCAAAAACTCAAAACGTTTATGTCATAATTAGATT-CAA------AT---------AT---------------TT-----CAT----------------GTCCCTAGAACTTA-ATATGAGACTGGGA--C--GAAGTCAT----------G-TGGGGC-----T--TGTGA---TCC-TTTTT----AAGGG-GTAGCAGACAA-TA-ATAA--------C-----TCTTA-TATCTTTTTTT-ATATTGTCATTATTT-----ATTCT---TA---TTTT-----CT-TA-AGTTTATTGATATGTTTATATACTTTGTTGTTCTTT--AA--CATTATTATA---ATCACTAAAATTCAAACAGAATATTTACTACTACTT-TT----TGCAT------------ACGTG----TGT-C---TATGTGCATGCTCA------TGCACAT------GAGCGTGTTTGTATGCGTGTGG------------AAGAGAGCGATATGTTTGTTCGAAAGTTT----GTGTGTTCGatc
gi|2 : aACATGT-AAAATTTGCAGTAAAATACTATTGAAAT----ATCAAattgtattgctaaaccttcgtcactttaatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaacatgtaaaatttgcagtaaaatactattgaaatatcaaattatctttaaatgtctgattcggaattgctccaccggattcagcccatttatggctgcggagaagg
gi|21 : atcgaaatgaagaagcaaattgtcatatgccattggaagtacaaaagtttatcaaaaactcaaaacgtttatgtcataattagattcaaatatttcatgtccctagaacttaatatgagactgggacgaagtcatgtggggcttgtgatcctttttaaggggtagcagacaataataactcttatatctttttttatattgtcattatttattcttattttcttaagtttattgatatgtttatatactttgttgttctttaacattattataatcactaaaattcaaacagaatatttactactactttttgcatacgtgtgtctatgtgcatgctcatgcacatgagcgtgtttgtatgcgtgtggaagagagcgatatgtttgttcgaaagtttgtgtgttcgattgtattgctaaaccttcgtcactttaatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaACATGT-AAAATTTGCAATAAAATATTGTT-GAAT----TTAAAattatctttaaatgtctgattcggaattgctccaccggattcagcccatttatggctgcggagaagg
gi|3 : gttttgaTCTACAT-GAAAAAGAAAACGGTCACATGTTCTTAGAAGTACAAAAGTTTATTAAAAACTCGAAACGTTTCAGTCATATTTGGTTT-CAA------AA---------AG---------------TT-----TAT----------------GTCCCTAGATGTTA-ATATGAGACTCGGG--C--GGAATCA-----------A-TGGGGT-----A--TGTTA---TCT-TTTTT----G-GGA-GT-GCAGACAA-TA-ATAA--------C-----TCTTC-TATCTTTTTTTTATATTGTCATTTTCTTTCTAATTAT---TT---TTTT-----CTCTACAGTTTATTAATATGTTTATATATTTTGTTTTTCTTT--CAAACACTATTATA---ATCACTAAAATTCAAGCAAAATATTTACTGCTTTTTCTT----TGCAT------------GTGTG----TGTGCGCGTGCGCGGGTGTGCGTGCGAGTGCAAGT------GACCGTGCTTGTATGCGTGTAG------------AAGTGAGTGATATGCTTGTTCGAAATTAT----ATGCATGTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAACACATGTAAAAAATTGCAATAAAATATTATT-AAAT-----TAAAtattaatttcttttagatctacttaaaaatctctcc
gi|4 : GTTA-CAATTATACACGGG--C--GGAATCATT---------A-GGGGGA-----G--GGGTA---TCC-TTTTT----G-GGGAGT-GCAGACAA-TA-GTAA--------C-----TTTTC-TATCATTTTTTTATATTGTCATAT--TTT-TAA----------------AAAAATTCTATAGTTTATTAATATG---------TTTGTTTTTCTTT--AAAACATTTTTATA---AT------------------ATGTTT--TACTTTTTCTT----TGCGTATATATAAANNNNNNNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCGTGCGAGTGAGCGTGTTTGTATGCGTGCGG------------AAGAGAGTGATATGCTTATTCGAAAGTAT----ACGTGTTCGTactaacatata
gi|5 : catatacattaa-GT-GCAGACAA-TA-A--A--------C-----TCTTT-TACCTTTT-TTTATATTGTCATTTTCTTT-TAATTCT---TT---TTTT-----TTCTATAGTTTATTCAAATGTTTTTATAACTTGTTTTTCTTT--AAAACATTATTATA---ATCACTAAAATTCAAGATATATATTTACTGCTTTTTCttgtattgcaaaactatcatcactttaatttgtatgtgcattttgacgcattggggacggctttaactaattgtttaaacttgtagcgcgaaccttttgcattttattcgttatttgtgctacaaactgatattttgcaataaaatattagtaaattaaaaacatgtatacgataatttccaggtatatttccgatacgttataccacatatatgtattgatataccgt
gi|5 : ACATGT-AAAATTTGCAATAAAATATTATT-TAAT-----TAAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgttactggtgttacaaattgatgttttgaacatgtaaaatttgcaataaaatattatttaattaaacc
gi|6 : gtgcagacaataaactcttttacctttttttatattgtcattttcttttaattctttttttttctatagtttattcaaatgtttttataacttgtttttctttaaaacattattataatcactaaaattcaagatatatatttactgctttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgttactggtgttacaaattgatgttttgaTTT----G-AGG-TT-GCAGACGG-TA-ATAA--------A-----ACTTC--GT-TTTTTTCTATATTATTATTTGTT-----ATTCT---CG---TTTT-------CTATAGTTTATTGATATGTTTA----CTTTGTTTTTCTTT--AAATCAGTGCTTCA---ATCACTAAAATTCAAGCAAAAAAGTTACTCCTATTACTT----TGCAT------------ACGTT----TATGTGTGTGCCTGCATGCTCGCGC--GTG--CGT------GTGAGTGTTTGTTTGCGTATGG------------AAGAGATTGGTATGCTTGTTCAAGGGTATACAAATGTGTTTGTcc
gi|6 : CATGT-CAAATGTGCTATAAAATATTATT-GAGTCTTAATAAAtttgctaaaatattgtcacattaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgttttgagcatgtcaaatgtgctataaaatattattgagtcttaataaat
gi|7 : tttgaggttgcagacggtaataaaacttcgtttttttctatattattatttgttattctcgttttctatagtttattgatatgtttactttgtttttctttaaatcagtgcttcaatcactaaaattcaagcaaaaaagttactcctattactttgcatacgtttatgtgtgtgcctgcatgctcgcgcgtgcgtgtgagtgtttgtttgcgtatggaagagattggtatgcttgttcaagggtatacaaatgtgtttgttttgctaaaatattgtcacattaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgttttgagG-AT-GCAGACAA-TA-GTAA--------C-----TGTTC-TACCTTTT---TATATTGTCGTTATCTTA-TAATTCT---TT---TTTT-----TTCTAATGTTTATTACTATGTTTATATACCTTGTTTTTCTTT--AAAACATTATTATA---ATCACTGAAATTCAAGTAATCTGTTTACTACTTTTTCTTANNNNNNNN------------NNNNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------NNNNNNNNNNNNNNNNNNNNNG------------AAGTGAGTGATATGCTTGTTCGAAAGTAT----ATGTGTTTGTt
gi|7 : aACATGT-AAAATTTGCAATAAAATATTATT-AAAT----ATAAAtcgtatatcaaaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttcgttattggtgttacaaattgatgttttgaacatgtaaaatttgcaataaaatattattaaatataaata
gi|8 : agatgcagacaatagtaactgttctacctttttatattgtcgttatcttataattctttttttttctaatgtttattactatgtttatataccttgtttttctttaaaacattattataatcactgaaattcaagtaatctgtttactactttttcttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaagtgagtgatatgcttgttcgaaagtatatgtgtttgttcgtatatcaaaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttcgttattggtgttacaaattgatgttttgaTCTAAAT-GAAAAAGAAAACGGTCATATGTTCTTAGAAGTACAGAAGTTTATTAAAAACTCTAAACGTTTCAGTCATAATTAGTGT-CAA------AT---------AT---------------TT-----CAT----------------GTCCCTAGATGTTA-ATATGAGACTCAGG--C--GGAATC------------A-TGGGG------G--TGATA---TCC-TTTTT----G-GGG-GT-GCAGACAA-TA-CTAA--------C-----TCTTA-TACCTCTTTTCTTTTTTG--ATAGTC------ATTTT---TT---TTTT-----TTCTATAGTTTATCAATATGTGTATATACTTTGTTTTT-TTTAAAAAACATAAGTATA---ATCACTAAAATTCAAGTAAAAAAATTACTGCTTTTTCTT----TGCAN------------NNNNN----NNNNNNNNNNNNNNNNNNNNNNNNNNAGTGCAAGT------GAGCGTGCTTGTATGCATGTAG------------AAGTGAGCGATATGCTTGTTCGAAAATGT----ATGTGTTTGta
gi|9 : GGTCATATGTTCTTAGAAGTACAAAC-TTTATTAAAAACTCTTAATGTTTCAGTCATAATAAGATT-GAA------AT---------AG---------------TT-----CAT----------------GTCCTTAGATGTCA-ATATGAGACTCGGG--C--GGAATC------------A-TGGGGG-----A--TGTTA---TCC-AATTTGAGGG-AGG-GT-GCAGACAA-TT-ATAA--------C-----TCTTC-T-TCCCTTTTTTATGTTGTCATTTTCTTT-TCATTCTTTCTT---TTTT-----TTCTATAGTTTATTAATATGTTTATATAC-TTGTTTTTCTTC--AAAACAGTATTATA---ATCAATAAAA---------------TATTGCTTTTTCTT----NNNNN------------NNNNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGTGAGTAATATGCTTGTTCGAAAGTTA----ATGTGTTTGT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): ATATATGTATTGTCATTTTAATTTGTACATGCATTTAGACGCGTCGGAGAGGGCTGTAACTACTGTTGTAAATCTAACAGCCCCATCTTTTTGTATGTTATTCATATTGATGCTACAATTAGATGTTTTGAACATATTTTGCAATAGAATATTATAAAACAAAAATGACATTAATGGTTTAAATGTGAACATTGTTCTGCAGATAGATATAAATATTTTAATTTGAAAATTTGAT
Unaligned ( gi|20 ): AAATTGTATATGTATTCTGAAGCACTGAGGAGGATTGTAACTAATGCTGTAACAACGTGTTGCTCGATCCTTTTGTATTTTATCTGTTTTACTTTTTGCCAAA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111111 3333333333333333333333333333333333333333333333333333 11 3333333333333 111111111 111111 1111111 111111 22222222222222222 111111111 222222222222 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 22222
lowQualScore : 5 1 4 2 0 3 000000 1111111111111111111111111111111111111111111111111111 3 00 55 5555555555555 666666666 5 555 3 55 222222 2 2 33 99999999 66666 4444444 777777 999 777777 0 4 0 0 33 2 444 0 0 2 1 1 7777 1 33333333333333333 33 3 1 11 222 44 555555555 1 000000000000 1 9999 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 5 66 77777
lowQualScore : . . . . . . ...... .................................................... . .. .. ............. ......... . ... . .. ...... . . .. ........ ..... ....... ...... ... ...... . . . . .. . ... . . . . . .... . ................. .. . . .. ... .. ......... . ............ . .... ............................................................................................................................................... . .. .....
lowQualScore : 0 1 8 6 2 6 555555 6666666666666666666666666666666666666666666666666666 3 00 00 3333333333333 333333333 3 888 3 88 777777 7 7 88 77777777 77777 3333333 444444 333 111111 7 2 3 8 77 8 777 2 7 7 4 0 7777 1 66666666666666666 77 2 2 00 888 22 555555555 0 555555555555 4 4444 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7 77 99999
consensus : TCTAAAT-GAAAAAGAAAACGGTCATATGTTCTTAGAAGTACAAAAGTTTATTAAAAACTCNAAACGTTTCAGTCATAATTAGTTT-CAA------AT---------AN---------------TT-----CAT----------------GTCCCTAGATGTTA-ATATGAGACTCGGG--C--GGAATCAT----------A-TGGGGT-----G--TGTTA---TCC-TTTTTG-GGG-G----T-GCAGACAA-TA-ATAA--------C-----TCTTC-TATCTTTTTTTTATATTGTCATTTTCTTT-TAATTCTTT---TTTT-----TTCTATAGTTTATTAATATGTTTATATACTTTGTTTTTCTTT--AAAACATTATTATA---ATCACTAAAATTCAAGCAAAATATTTACTGCTTTTTCTT----TGCATACGTG----T------------GTGCGTGCGTGCGCGTGCACGCGCGAGTGCACG------TGNGCGTGTTTGTATGCGTGTGG------------AAGAGAGTGATATGCTTGTTCGAAAGTAT----ATGTGTTCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAACACATGT-AAAATTTGCAATAAAATATTATT-NAAT----ATAAA
Reference ( family-1588 ) : TCTAAAT-GAAAAAGAAAACGGTCATATGTTCTTAGAAGTACAAAAGTTTATTAAAAACTCNAAACGTTTCAGTCATAATTAGTTT-CAA------AT---------AN---------------TT-----CAT----------------GTCCCTAGATGTTA-ATATGAGACTCGGG--C--GGAATCAT----------A-TGGGGT-----G--TGTTA---TCC-TTTTTG-GGG-G----T-GCAGACAA-TA-ATAA--------C-----TCTTC-TATCTTTTTTTTATATTGTCATTTTCTTT-TAATTCTTT---TTTT-----TTCTATAGTTTATTAATATGTTTATATACTTTGTTTTTCTTT--AAAACATTATTATA---ATCACTAAAATTCAAGCAAAATATTTACTGCTTTTTCTT----TGCATACGTG----T------------GTGCGTGCGTGCGCGTGCACGCGCGAGTGCACG------TGNGCGTGTTTGTATGCGTGTGG------------AAGAGAGTGATATGCTTGTTCGAAAGTAT----ATGTGTTCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAACACATGT-AAAATTTGCAATAAAATATTATT-NAAT----ATAAA
gi|1 : CTAAACCAAAAAAGTAAACGCTCATTTGTTCATGAAAGTTCAAAAGTTCATTAAAG------------TCAGTCACAATTAGTTT-CAA------TT---------AA----------------T-----CATAAACGTTTGATTTGCGGTCCCAAGATGTTG-ATATGAGATTTGGG--CGGGGGATCAT----------G-AGGAGG-----G--GG------TCC-GTTTT--GGA-T----T-GCAGACAA-TG-ATAA--------CTAAAATTTTCGTAT-TTTCTTTTAT----TCATTCTC------ATTC----------------CCTATAGTCTAT---TCTCTTTA-A---TTGGATTTTCTTT--AAATCGTTATAATT---ATCACCTAACTTGTAGCATAACAATTACTCCTATTTCGT----AGCGTATGTGTATTT------------GTTTGTGTGTGCGCGTGTACGCGCAAGTGCGTT------TGTG
gi|10 : aagcggttattaaggaacaTCTAAAT-GAAAAATAAAACGGCCATGTATTCTTAGAAGTACAAAAGTTTATTAAAAACTCAAAAAGTTTCAGTCATAATTAGTTTAAAA------AT---------AG---------------TT-----CAT----------------GTCCCTATATGTTATATTT---ACTCGGttcgaacgtattatgtttttatttttttatttgcaataatatcgtcaccttaatttgtatgatgcaatttgacttgtcaggaagggctgtaactaatattgttgaccgacctttttgaacttcgttcattaattatcctacaaattgatgtattgaatatgtaaaatgtgcaataaaatattttttaattaaattagctacactacatattaaatacaataattatgataaaatataaaaatattatttcacaaaatataa
gi|10 : taaaaGGGGG-----G--GGTTA---TCC-CTTTTT-GGG------T-GCACACAA-TA-ATAA--------C-----ACTTC-TATATTTTTT----ATTGTCATTTTCTTT-TAATTCTTT---TTTC-------CTATCATTTATTAATATGTTAATATACA--GTTTTTCTTT--AAAACATTATTATA---ATCACTAAAATTAAAGCAAAATATTTACTGCTTTTTCTT----TGCATGTGTG----C------------GTGCGTGCTTACGTGTGTACGCGCGAGTGtgtgtgtattaactcggtgtgtgtgtggagggggggggggggggggggttatccctttttgggtgcacacaataataacacttctatattttttattgtcattttcttttaattcttttttcctatcatttattaatatgttaatatacagtttttctttaaaacattattataatcactaaaattaaagcaaaatatttactgctttttctttgcatgtgtgcgtgcgtgcttacgtgtgtacgcgcgagtg
gi|11 : taaaatctaaatgaaaaataaaacggccatgtattcttagaagtacaaaagtttattaaaaactcaaaaagtttcagtcataattagtttaaaaatagttcatgtccctatatgttatatttactcggtgtgtgtattaactcggtgtgtgtgtggagggggggggggTGCGTTTGTTTGCAAATGTGAATACACG------TGTGCGTGTTTGTACGCGTGTGG------------TAGAAAATGATATGCTTGCTCGAAAGTAT----ATGACTTCGT
gi|11 : ataCATGT-ACAATTTGCAATGGAATATTATT-CAAT-----TAAAttgtattgcaagaatatcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgttatttgtgctacaaactgatgttttgaacaatcgtcatgtacaatttgcaatggaatattattcaattaaacatataatggcttttattacacacgcctatcatcataacatacatataagtacattcaa
gi|12 : atatgcgtttgtttgcaaatgtgaatacacgtgtgcgtgtttgtacgcgtgtggtagaaaatgatatgcttgctcgaaagtatatgacttcgtttgtattgcaagaatatcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgttatttgtgctacaaactgatgttttgaacaatcgtTTGATTTTCTTT--AAA---------------TCACTAAAATTCAAGCAGAATAATAACTCCTATTTCTT----TGCATACATG----T------------AT--ATGTGTGTGCGTGCAAACTCGCGTGCCTG------CATGTGTATTTGAATGCGTGTGG------------AAGAGAGTAATATGCATGAT-GAAGGTAT----ATGTATcatataatggcttttattacacacgcctatcatcataacatacatataagtacattcaa
gi|13 : actttcaagtttataacataactataaagatttttggttgttgcgtatgaaTCTAAAT-GAAAAAGAAAACGGCCATATGTTCTTAGAAGTACAAAATTTTATTAAAAACTCTAAACGTTTCATTCATAATAAGTTT-CAA------AT---------AT---------------TT-----CAT----------------ATATCTAGATGTTA-ATATGAGACTCGGA--C--GGAAGCATGAGGGGGTGAG-TGGGGT-----GGCTGTTA---TCC-TTTTTT-AGG-G----T-GCAGACAA-TA---AA--------C-----TCTTT-TA-CCTTTTTTTATATTGTCATTTTCTTT-TAATTCTTT---TTTT-----TTCTATAGTTTATTCAAATGTTTTTATAACTTGTTTTTCTTT--AAAACATTATTATA---ATCACTAAAATTCAAGATATATATTTACTGCTTTTTcagtaatcgtcactttaatgtgtatacgcataatgacgcattgtggaagtatgtaactaatgttgttaaaattgtagtccaacaattttccattttattcgttatttatgctacaaaataatgtgttgaaca
gi|14 : aaataaaaaTCTAAAT-GAAAAAGAAAACGGCCATATGTTCTTAGAAGTTCAAAATTTTATTAAAATCTCAACACGTTTCACTCATAATAAGTTT-CAA------AT---------AT---------------TT-----CAT----------------ATCTCTAGATGTTT-ATATGAGACTCGGA--C--GGAAGCATGAGGG-----G-TGGGGTGGGGGG--TGTTA---TCCTTTTTTT-TGG-G----T-GCAGACAA-TA---AA--------C-----TCTTT-TACC--TTTTTTATATTGTCATTTTC-----------TT---TTTT-----TTCTATAGTTTATTCAAATGTTTTTATAACTTATTTTTCTTT--AAAACATTATTATA---ATCACTAAAATTCA
gi|15 : cgagttgttatttggaaataaaaaTCCAAAT-GAAAGAGAAAAGGCTCACGTGTTCTTAGAAGTACAAAAGTTCATTAAAA-CTCAAAACTTTTCAATCATAATTAGTTT-TAA------AT---------AACCATTAACGTTATAGTT-----CCT----------------GTCCGTGGACGTTA-GTATAAGG---GGG--C--GGAA-CA-----------A-TGGGGT-----G--TG--G---TCC-TTTTTG-GGT------T-GCAGACAA-TA-ATAAAAAAAATAC-----TCTT---AT---TTTTTTATATTTTCATTTTTT-----ATTCTTT---CTCT-----TTCTACAATTTATTA---TCTTTA----CTTGGATTTTCTTT--AAGTCATTATTATA---ATCATTCAAc
gi|17 : aagttgttatttgacaacacaaagCAGTCATAATTAATTT-CAATTAATCATTAACACTAGAT---------------TC-----CCT----------------GTCCCTGCATATTT-ATATGATGCTTAGGGAC--GGGATCAT----------AGTCGGGT----------TTAGGGTCC-TTTTGG-AGG-T----T-GCAGACAAATGGATAG--------T-----TCTT---------TTGTTATATC-----TTTGTTT-TCATTCTTTATATTTT-----TTTTAT-GTTTACTtt
gi|18 : TGATTTTCTTT--GAATTATTATTACATGTAT-ATTTAA-CTCTAGCGAAATAATTACTCCTATTTCTT----TG--------------------------TGCATGCTTGCACATA--------AATGT-----------TTCGTGTTTGTTTATGTTTGG------------AAGAAAGTGATATGTTTGTttcttcattcaaattctagcagaataatttctcttatttccttgcgt
gi|19 : GTTTCAAT--TAATTAG------A------AT---------GT---------------TTGATTCCCT----------------GTCTCGAAGTGTTG-ATAGGACATTTGGGGGC--AGAATCAT----------A-TGG--T-----G--TGGAG---TTC-TTATTT-AGG-T----T-GCAAACAA-TA-ATAA--------C-----TCTTC--------TTTTAATATTGT--TTCTTTTT-TCACTCTCA---TTCT-----CTGTAgcatataacaaacaaattgaatatttactaaaa
gi|2 : TCGAAAT-GAAGAAGCAAATTGTCATATGCCATTGGAAGTACAAAAGTTTATCAAAAACTCAAAACGTTTATGTCATAATTAGATT-CAA------AT---------AT---------------TT-----CAT----------------GTCCCTAGAACTTA-ATATGAGACTGGGA--C--GAAGTCAT----------G-TGGGGC-----T--TGTGA---TCC-TTTTTAAGGG-G----TAGCAGACAA-TA-ATAA--------C-----TCTTA-TATCTTTTTTT-ATATTGTCATTATTT-----ATTCTTA---TTTT-----CT-TA-AGTTTATTGATATGTTTATATACTTTGTTGTTCTTT--AA--CATTATTATA---ATCACTAAAATTCAAACAGAATATTTACTACTACTT-TT----TGCATACGTG----T------------GTCTATG--------TGCATGCTCA--TGCACA------TGAGCGTGTTTGTATGCGTGTGG------------AAGAGAGCGATATGTTTGTTCGAAAGTTT----GTGTGTTCGatc
gi|2 : aACATGT-AAAATTTGCAGTAAAATACTATTGAAAT----ATCAAattgtattgctaaaccttcgtcactttaatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaacatgtaaaatttgcagtaaaatactattgaaatatcaaattatctttaaatgtctgattcggaattgctccaccggattcagcccatttatggctgcggagaagg
gi|21 : atcgaaatgaagaagcaaattgtcatatgccattggaagtacaaaagtttatcaaaaactcaaaacgtttatgtcataattagattcaaatatttcatgtccctagaacttaatatgagactgggacgaagtcatgtggggcttgtgatcctttttaaggggtagcagacaataataactcttatatctttttttatattgtcattatttattcttattttcttaagtttattgatatgtttatatactttgttgttctttaacattattataatcactaaaattcaaacagaatatttactactactttttgcatacgtgtgtctatgtgcatgctcatgcacatgagcgtgtttgtatgcgtgtggaagagagcgatatgtttgttcgaaagtttgtgtgttcgattgtattgctaaaccttcgtcactttaatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaACATGT-AAAATTTGCAATAAAATATTGTT-GAAT----TTAAAattatctttaaatgtctgattcggaattgctccaccggattcagcccatttatggctgcggagaagg
gi|3 : gttttgaTCTACAT-GAAAAAGAAAACGGTCACATGTTCTTAGAAGTACAAAAGTTTATTAAAAACTCGAAACGTTTCAGTCATATTTGGTTT-CAA------AA---------AG---------------TT-----TAT----------------GTCCCTAGATGTTA-ATATGAGACTCGGG--C--GGAATCA-----------A-TGGGGT-----A--TGTTA---TCT-TTTTTG-GGA-G----T-GCAGACAA-TA-ATAA--------C-----TCTTC-TATCTTTTTTTTATATTGTCATTTTCTTTCTAATTATTT---TTTT-----CTCTACAGTTTATTAATATGTTTATATATTTTGTTTTTCTTT--CAAACACTATTATA---ATCACTAAAATTCAAGCAAAATATTTACTGCTTTTTCTT----TGCATGTGTG----T------------GTGCGCGTGCGCGGGTGTGCGTGCGAGTGCAAG------TGACCGTGCTTGTATGCGTGTAG------------AAGTGAGTGATATGCTTGTTCGAAATTAT----ATGCATGTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAACACATGTAAAAAATTGCAATAAAATATTATT-AAAT-----TAAAtattaatttcttttagatctacttaaaaatctctcc
gi|4 : GTTA-CAATTATACACGGG--C--GGAATCATT---------A-GGGGGA-----G--GGGTA---TCC-TTTTTG-GGGAG----T-GCAGACAA-TA-GTAA--------C-----TTTTC-TATCATTTTTTTATATTGTCATAT--TTT-TAA-------------AAAAATTCTATAGTTTATTAATATG---------TTTGTTTTTCTTT--AAAACATTTTTATA---AT------------------ATGTTT--TACTTTTTCTT----TGCGTATATA----TAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCGTGCGAGTGAGCGTGTTTGTATGCGTGCGG------------AAGAGAGTGATATGCTTATTCGAAAGTAT----ACGTGTTCGTactaacatata
gi|5 : catatacattaa-G----T-GCAGACAA-TA-A--A--------C-----TCTTT-TACCTTTT-TTTATATTGTCATTTTCTTT-TAATTCTTT---TTTT-----TTCTATAGTTTATTCAAATGTTTTTATAACTTGTTTTTCTTT--AAAACATTATTATA---ATCACTAAAATTCAAGATATATATTTACTGCTTTTTCttgtattgcaaaactatcatcactttaatttgtatgtgcattttgacgcattggggacggctttaactaattgtttaaacttgtagcgcgaaccttttgcattttattcgttatttgtgctacaaactgatattttgcaataaaatattagtaaattaaaaacatgtatacgataatttccaggtatatttccgatacgttataccacatatatgtattgatataccgt
gi|5 : ACATGT-AAAATTTGCAATAAAATATTATT-TAAT-----TAAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgttactggtgttacaaattgatgttttgaacatgtaaaatttgcaataaaatattatttaattaaacc
gi|6 : gtgcagacaataaactcttttacctttttttatattgtcattttcttttaattctttttttttctatagtttattcaaatgtttttataacttgtttttctttaaaacattattataatcactaaaattcaagatatatatttactgctttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgttactggtgttacaaattgatgttttgaTTTG-AGG-T----T-GCAGACGG-TA-ATAA--------A-----ACTTC--GT-TTTTTTCTATATTATTATTTGTT-----ATTCTCG---TTTT-------CTATAGTTTATTGATATGTTTA----CTTTGTTTTTCTTT--AAATCAGTGCTTCA---ATCACTAAAATTCAAGCAAAAAAGTTACTCCTATTACTT----TGCATACGTT----T------------ATGTGTGTGCCTGCATGCTCGCGC--GTG--CG------TGTGAGTGTTTGTTTGCGTATGG------------AAGAGATTGGTATGCTTGTTCAAGGGTATACAAATGTGTTTGTcc
gi|6 : CATGT-CAAATGTGCTATAAAATATTATT-GAGTCTTAATAAAtttgctaaaatattgtcacattaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgttttgagcatgtcaaatgtgctataaaatattattgagtcttaataaat
gi|7 : tttgaggttgcagacggtaataaaacttcgtttttttctatattattatttgttattctcgttttctatagtttattgatatgtttactttgtttttctttaaatcagtgcttcaatcactaaaattcaagcaaaaaagttactcctattactttgcatacgtttatgtgtgtgcctgcatgctcgcgcgtgcgtgtgagtgtttgtttgcgtatggaagagattggtatgcttgttcaagggtatacaaatgtgtttgttttgctaaaatattgtcacattaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgttttgagG-A----T-GCAGACAA-TA-GTAA--------C-----TGTTC-TACCTTTT---TATATTGTCGTTATCTTA-TAATTCTTT---TTTT-----TTCTAATGTTTATTACTATGTTTATATACCTTGTTTTTCTTT--AAAACATTATTATA---ATCACTGAAATTCAAGTAATCTGTTTACTACTTTTTCTTANNNNNNNNNNNNN----N------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------NNNNNNNNNNNNNNNNNNNNNNG------------AAGTGAGTGATATGCTTGTTCGAAAGTAT----ATGTGTTTGTt
gi|7 : aACATGT-AAAATTTGCAATAAAATATTATT-AAAT----ATAAAtcgtatatcaaaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttcgttattggtgttacaaattgatgttttgaacatgtaaaatttgcaataaaatattattaaatataaata
gi|8 : agatgcagacaatagtaactgttctacctttttatattgtcgttatcttataattctttttttttctaatgtttattactatgtttatataccttgtttttctttaaaacattattataatcactgaaattcaagtaatctgtttactactttttcttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaagtgagtgatatgcttgttcgaaagtatatgtgtttgttcgtatatcaaaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttcgttattggtgttacaaattgatgttttgaTCTAAAT-GAAAAAGAAAACGGTCATATGTTCTTAGAAGTACAGAAGTTTATTAAAAACTCTAAACGTTTCAGTCATAATTAGTGT-CAA------AT---------AT---------------TT-----CAT----------------GTCCCTAGATGTTA-ATATGAGACTCAGG--C--GGAATC------------A-TGGGG------G--TGATA---TCC-TTTTTG-GGG-G----T-GCAGACAA-TA-CTAA--------C-----TCTTA-TACCTCTTTTCTTTTTTG--ATAGTC------ATTTTTT---TTTT-----TTCTATAGTTTATCAATATGTGTATATACTTTGTTTTT-TTTAAAAAACATAAGTATA---ATCACTAAAATTCAAGTAAAAAAATTACTGCTTTTTCTT----TGCANNNNNN----N------------NNNNNNNNNNNNNNNNNNNNNNNNNAGTGCAAG------TGAGCGTGCTTGTATGCATGTAG------------AAGTGAGCGATATGCTTGTTCGAAAATGT----ATGTGTTTGta
gi|9 : GGTCATATGTTCTTAGAAGTACAAAC-TTTATTAAAAACTCTTAATGTTTCAGTCATAATAAGATT-GAA------AT---------AG---------------TT-----CAT----------------GTCCTTAGATGTCA-ATATGAGACTCGGG--C--GGAATCAT-------------GGGGG-----A--TGTTA---TCC-AATTTG-AGG-GAGGGT-GCAGACAA-TT-ATAA--------C-----TCTTC-T-TCCCTTTTTTATGTTGTCATTTTCTTT-TCATTCTTTCTTTTTT-----TTCTATAGTTTATTAATATGTTTATATACTT-GTTTTTCTTC--AAAACAGTATTATA---ATCAATAAAAT---------------ATTGCTTTTTCTT----NNNNNNNNNN----N------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGTGAGTAATATGCTTGTTCGAAAGTTA----ATGTGTTTGT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): ATATATGTATTGTCATTTTAATTTGTACATGCATTTAGACGCGTCGGAGAGGGCTGTAACTACTGTTGTAAATCTAACAGCCCCATCTTTTTGTATGTTATTCATATTGATGCTACAATTAGATGTTTTGAACATATTTTGCAATAGAATATTATAAAACAAAAATGACATTAATGGTTTAAATGTGAACATTGTTCTGCAGATAGATATAAATATTTTAATTTGAAAATTTGAT
Unaligned ( gi|20 ): AAATTGTATATGTATTCTGAAGCACTGAGGAGGATTGTAACTAATGCTGTAACAACGTGTTGCTCGATCCTTTTGTATTTTATCTGTTTTACTTTTTGCCAAA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111111 3333333333333333333333333333333333333333333333333333 11 3333333333333 111111111 111111 1111111 111111 22222222222222222 111111111 222222222222 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 22222
lowQualScore : 5 1 4 2 0 3 000000 1111111111111111111111111111111111111111111111111111 3 00 55 5555555555555 666666666 5 555 3 55 222222 2 2 33 99999999 66666 4444444 777777 999 777777 0 4 0 0 33 2 444 0 0 2 1 1 7777 1 33333333333333333 33 3 1 11 222 44 555555555 1 000000000000 1 9999 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 5 66 77777
lowQualScore : . . . . . . ...... .................................................... . .. .. ............. ......... . ... . .. ...... . . .. ........ ..... ....... ...... ... ...... . . . . .. . ... . . . . . .... . ................. .. . . .. ... .. ......... . ............ . .... ............................................................................................................................................... . .. .....
lowQualScore : 0 1 8 6 2 6 555555 6666666666666666666666666666666666666666666666666666 3 00 00 3333333333333 333333333 3 888 3 88 777777 7 7 88 77777777 77777 3333333 444444 333 111111 7 2 3 8 77 8 777 2 7 7 4 0 7777 1 66666666666666666 77 2 2 00 888 22 555555555 0 555555555555 4 4444 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7 77 99999
consensus : TCTAAAT-GAAAAAGAAAACGGTCATATGTTCTTAGAAGTACAAAAGTTTATTAAAAACTCNAAACGTTTCAGTCATAATTAGTTT-CAA------AT---------AN---------------TT-----CAT----------------GTCCCTAGATGTTA-ATATGAGACTCGGG--C--GGAATCAT----------A-TGGGGT-----G--TGTTA---TCC-TTTTTG-GGG-G----T-GCAGACAA-TA-ATAA--------C-----TCTTC-TATCTTTTTTTTATATTGTCATTTTCTTT-TAATTCTTT---TTTT-----TTCTATAGTTTATTAATATGTTTATATACTTTGTTTTTCTTT--AAAACATTATTATA---ATCACTAAAATTCAAGCAAAATATTTACTGCTTTTTCTT----TGCATACGTG----T------------GTGCGTGCGTGCGCGTGCACGCGCGAGTGCACG------TGNGCGTGTTTGTATGCGTGTGG------------AAGAGAGTGATATGCTTGTTCGAAAGTAT----ATGTGTTCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAACACATGT-AAAATTTGCAATAAAATATTATT-NAAT----ATAAA
Reference ( family-1588 ) : TCTAAAT-GAAAAAGAAAACGGTCATATGTTCTTAGAAGTACAAAAGTTTATTAAAAACTCNAAACGTTTCAGTCATAATTAGTTT-CAA------AT---------AN---------------TT-----CAT----------------GTCCCTAGATGTTA-ATATGAGACTCGGG--C--GGAATCAT----------A-TGGGGT-----G--TGTTA---TCC-TTTTTG-GGG-G----T-GCAGACAA-TA-ATAA--------C-----TCTTC-TATCTTTTTTTTATATTGTCATTTTCTTT-TAATTCTTT---TTTT-----TTCTATAGTTTATTAATATGTTTATATACTTTGTTTTTCTTT--AAAACATTATTATA---ATCACTAAAATTCAAGCAAAATATTTACTGCTTTTTCTT----TGCATACGTG----T------------GTGCGTGCGTGCGCGTGCACGCGCGAGTGCACG------TGNGCGTGTTTGTATGCGTGTGG------------AAGAGAGTGATATGCTTGTTCGAAAGTAT----ATGTGTTCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAACACATGT-AAAATTTGCAATAAAATATTATT-NAAT----ATAAA
gi|1 : CTAAACCAAAAAAGTAAACGCTCATTTGTTCATGAAAGTTCAAAAGTTCATTAAAG------------TCAGTCACAATTAGTTT-CAA------TT---------AA----------------T-----CATAAACGTTTGATTTGCGGTCCCAAGATGTTG-ATATGAGATTTGGG--CGGGGGATCAT----------G-AGGAGG-----G--GG------TCC-GTTTT--GGA-T----T-GCAGACAA-TG-ATAA--------CTAAAATTTTCGTAT-TTTCTTTTAT----TCATTCTC------ATTC----------------CCTATAGTCTAT---TCTCTTTA-A---TTGGATTTTCTTT--AAATCGTTATAATT---ATCACCTAACTTGTAGCATAACAATTACTCCTATTTCGT----AGCGTATGTGTATTT------------GTTTGTGTGTGCGCGTGTACGCGCAAGTGCGTT------TGTG
gi|10 : aagcggttattaaggaacaTCTAAAT-GAAAAATAAAACGGCCATGTATTCTTAGAAGTACAAAAGTTTATTAAAAACTCAAAAAGTTTCAGTCATAATTAGTTTAAAA------AT---------AG---------------TT-----CAT----------------GTCCCTATATGTTATATTT---ACTCGGttcgaacgtattatgtttttatttttttatttgcaataatatcgtcaccttaatttgtatgatgcaatttgacttgtcaggaagggctgtaactaatattgttgaccgacctttttgaacttcgttcattaattatcctacaaattgatgtattgaatatgtaaaatgtgcaataaaatattttttaattaaattagctacactacatattaaatacaataattatgataaaatataaaaatattatttcacaaaatataa
gi|10 : taaaaGGGGG-----G--GGTTA---TCC-CTTTTT-GGG------T-GCACACAA-TA-ATAA--------C-----ACTTC-TATATTTTTT----ATTGTCATTTTCTTT-TAATTCTTT---TTTC-------CTATCATTTATTAATATGTTAATATACA--GTTTTTCTTT--AAAACATTATTATA---ATCACTAAAATTAAAGCAAAATATTTACTGCTTTTTCTT----TGCATGTGTG----C------------GTGCGTGCTTACGTGTGTACGCGCGAGTGtgtgtgtattaactcggtgtgtgtgtggagggggggggggggggggggttatccctttttgggtgcacacaataataacacttctatattttttattgtcattttcttttaattcttttttcctatcatttattaatatgttaatatacagtttttctttaaaacattattataatcactaaaattaaagcaaaatatttactgctttttctttgcatgtgtgcgtgcgtgcttacgtgtgtacgcgcgagtg
gi|11 : taaaatctaaatgaaaaataaaacggccatgtattcttagaagtacaaaagtttattaaaaactcaaaaagtttcagtcataattagtttaaaaatagttcatgtccctatatgttatatttactcggtgtgtgtattaactcggtgtgtgtgtggagggggggggggTGCGTTTGTTTGCAAATGTGAATACACG------TGTGCGTGTTTGTACGCGTGTGG------------TAGAAAATGATATGCTTGCTCGAAAGTAT----ATGACTTCGT
gi|11 : ataCATGT-ACAATTTGCAATGGAATATTATT-CAAT-----TAAAttgtattgcaagaatatcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgttatttgtgctacaaactgatgttttgaacaatcgtcatgtacaatttgcaatggaatattattcaattaaacatataatggcttttattacacacgcctatcatcataacatacatataagtacattcaa
gi|12 : atatgcgtttgtttgcaaatgtgaatacacgtgtgcgtgtttgtacgcgtgtggtagaaaatgatatgcttgctcgaaagtatatgacttcgtttgtattgcaagaatatcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgttatttgtgctacaaactgatgttttgaacaatcgtTTGATTTTCTTT--AAA---------------TCACTAAAATTCAAGCAGAATAATAACTCCTATTTCTT----TGCATACATG----T------------AT--ATGTGTGTGCGTGCAAACTCGCGTGCCTG------CATGTGTATTTGAATGCGTGTGG------------AAGAGAGTAATATGCATGAT-GAAGGTAT----ATGTATcatataatggcttttattacacacgcctatcatcataacatacatataagtacattcaa
gi|13 : actttcaagtttataacataactataaagatttttggttgttgcgtatgaaTCTAAAT-GAAAAAGAAAACGGCCATATGTTCTTAGAAGTACAAAATTTTATTAAAAACTCTAAACGTTTCATTCATAATAAGTTT-CAA------AT---------AT---------------TT-----CAT----------------ATATCTAGATGTTA-ATATGAGACTCGGA--C--GGAAGCATGAGGGGGTGAG-TGGGGT-----GGCTGTTA---TCC-TTTTTT-AGG-G----T-GCAGACAA-TA---AA--------C-----TCTTT-TA-CCTTTTTTTATATTGTCATTTTCTTT-TAATTCTTT---TTTT-----TTCTATAGTTTATTCAAATGTTTTTATAACTTGTTTTTCTTT--AAAACATTATTATA---ATCACTAAAATTCAAGATATATATTTACTGCTTTTTcagtaatcgtcactttaatgtgtatacgcataatgacgcattgtggaagtatgtaactaatgttgttaaaattgtagtccaacaattttccattttattcgttatttatgctacaaaataatgtgttgaaca
gi|14 : aaataaaaaTCTAAAT-GAAAAAGAAAACGGCCATATGTTCTTAGAAGTTCAAAATTTTATTAAAATCTCAACACGTTTCACTCATAATAAGTTT-CAA------AT---------AT---------------TT-----CAT----------------ATCTCTAGATGTTT-ATATGAGACTCGGA--C--GGAAGCATGAGGG-----G-TGGGGTGGGGGG--TGTTA---TCCTTTTTTT-TGG-G----T-GCAGACAA-TA---AA--------C-----TCTTT-TACC--TTTTTTATATTGTCATTTTC-----------TT---TTTT-----TTCTATAGTTTATTCAAATGTTTTTATAACTTATTTTTCTTT--AAAACATTATTATA---ATCACTAAAATTCA
gi|15 : cgagttgttatttggaaataaaaaTCCAAAT-GAAAGAGAAAAGGCTCACGTGTTCTTAGAAGTACAAAAGTTCATTAAAA-CTCAAAACTTTTCAATCATAATTAGTTT-TAA------AT---------AACCATTAACGTTATAGTT-----CCT----------------GTCCGTGGACGTTA-GTATAAGG---GGG--C--GGAA-CA-----------A-TGGGGT-----G--TG--G---TCC-TTTTTG-GGT------T-GCAGACAA-TA-ATAAAAAAAATAC-----TCTT---AT---TTTTTTATATTTTCATTTTTT-----ATTCTTT---CTCT-----TTCTACAATTTATTA---TCTTTA----CTTGGATTTTCTTT--AAGTCATTATTATA---ATCATTCAAc
gi|17 : aagttgttatttgacaacacaaagCAGTCATAATTAATTT-CAATTAATCATTAACACTAGAT---------------TC-----CCT----------------GTCCCTGCATATTT-ATATGATGCTTAGGGAC--GGGATCAT----------AGTCGGGT----------TTAGGGTCC-TTTTGG-AGG-T----T-GCAGACAAATGGATAG--------T-----TCTT---------TTGTTATATC-----TTTGTTT-TCATTCTTTATATTTT-----TTTTAT-GTTTACTtt
gi|18 : TGATTTTCTTT--GAATTATTATTACATGTAT-ATTTAA-CTCTAGCGAAATAATTACTCCTATTTCTT----TG--------------------------TGCATGCTTGCACATA--------AATGT-----------TTCGTGTTTGTTTATGTTTGG------------AAGAAAGTGATATGTTTGTttcttcattcaaattctagcagaataatttctcttatttccttgcgt
gi|19 : GTTTCAAT--TAATTAG------A------AT---------GT---------------TTGATTCCCT----------------GTCTCGAAGTGTTG-ATAGGACATTTGGGGGC--AGAATCAT----------A-TGG--T-----G--TGGAG---TTC-TTATTT-AGG-T----T-GCAAACAA-TA-ATAA--------C-----TCTTC--------TTTTAATATTGT--TTCTTTTT-TCACTCTCA---TTCT-----CTGTAgcatataacaaacaaattgaatatttactaaaa
gi|2 : TCGAAAT-GAAGAAGCAAATTGTCATATGCCATTGGAAGTACAAAAGTTTATCAAAAACTCAAAACGTTTATGTCATAATTAGATT-CAA------AT---------AT---------------TT-----CAT----------------GTCCCTAGAACTTA-ATATGAGACTGGGA--C--GAAGTCAT----------G-TGGGGC-----T--TGTGA---TCC-TTTTTAAGGG-G----TAGCAGACAA-TA-ATAA--------C-----TCTTA-TATCTTTTTTT-ATATTGTCATTATTT-----ATTCTTA---TTTT-----CT-TA-AGTTTATTGATATGTTTATATACTTTGTTGTTCTTT--AA--CATTATTATA---ATCACTAAAATTCAAACAGAATATTTACTACTACTT-TT----TGCATACGTG----T------------GTCTATG--------TGCATGCTCA--TGCACA------TGAGCGTGTTTGTATGCGTGTGG------------AAGAGAGCGATATGTTTGTTCGAAAGTTT----GTGTGTTCGatc
gi|2 : aACATGT-AAAATTTGCAGTAAAATACTATTGAAAT----ATCAAattgtattgctaaaccttcgtcactttaatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaacatgtaaaatttgcagtaaaatactattgaaatatcaaattatctttaaatgtctgattcggaattgctccaccggattcagcccatttatggctgcggagaagg
gi|21 : atcgaaatgaagaagcaaattgtcatatgccattggaagtacaaaagtttatcaaaaactcaaaacgtttatgtcataattagattcaaatatttcatgtccctagaacttaatatgagactgggacgaagtcatgtggggcttgtgatcctttttaaggggtagcagacaataataactcttatatctttttttatattgtcattatttattcttattttcttaagtttattgatatgtttatatactttgttgttctttaacattattataatcactaaaattcaaacagaatatttactactactttttgcatacgtgtgtctatgtgcatgctcatgcacatgagcgtgtttgtatgcgtgtggaagagagcgatatgtttgttcgaaagtttgtgtgttcgattgtattgctaaaccttcgtcactttaatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaACATGT-AAAATTTGCAATAAAATATTGTT-GAAT----TTAAAattatctttaaatgtctgattcggaattgctccaccggattcagcccatttatggctgcggagaagg
gi|3 : gttttgaTCTACAT-GAAAAAGAAAACGGTCACATGTTCTTAGAAGTACAAAAGTTTATTAAAAACTCGAAACGTTTCAGTCATATTTGGTTT-CAA------AA---------AG---------------TT-----TAT----------------GTCCCTAGATGTTA-ATATGAGACTCGGG--C--GGAATCA-----------A-TGGGGT-----A--TGTTA---TCT-TTTTTG-GGA-G----T-GCAGACAA-TA-ATAA--------C-----TCTTC-TATCTTTTTTTTATATTGTCATTTTCTTTCTAATTATTT---TTTT-----CTCTACAGTTTATTAATATGTTTATATATTTTGTTTTTCTTT--CAAACACTATTATA---ATCACTAAAATTCAAGCAAAATATTTACTGCTTTTTCTT----TGCATGTGTG----T------------GTGCGCGTGCGCGGGTGTGCGTGCGAGTGCAAG------TGACCGTGCTTGTATGCGTGTAG------------AAGTGAGTGATATGCTTGTTCGAAATTAT----ATGCATGTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAACACATGTAAAAAATTGCAATAAAATATTATT-AAAT-----TAAAtattaatttcttttagatctacttaaaaatctctcc
gi|4 : GTTA-CAATTATACACGGG--C--GGAATCATT---------A-GGGGGA-----G--GGGTA---TCC-TTTTTG-GGGAG----T-GCAGACAA-TA-GTAA--------C-----TTTTC-TATCATTTTTTTATATTGTCATAT--TTT-TAA-------------AAAAATTCTATAGTTTATTAATATG---------TTTGTTTTTCTTT--AAAACATTTTTATA---AT------------------ATGTTT--TACTTTTTCTT----TGCGTATATA----TAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCGTGCGAGTGAGCGTGTTTGTATGCGTGCGG------------AAGAGAGTGATATGCTTATTCGAAAGTAT----ACGTGTTCGTactaacatata
gi|5 : catatacattaa-G----T-GCAGACAA-TA-A--A--------C-----TCTTT-TACCTTTT-TTTATATTGTCATTTTCTTT-TAATTCTTT---TTTT-----TTCTATAGTTTATTCAAATGTTTTTATAACTTGTTTTTCTTT--AAAACATTATTATA---ATCACTAAAATTCAAGATATATATTTACTGCTTTTTCttgtattgcaaaactatcatcactttaatttgtatgtgcattttgacgcattggggacggctttaactaattgtttaaacttgtagcgcgaaccttttgcattttattcgttatttgtgctacaaactgatattttgcaataaaatattagtaaattaaaaacatgtatacgataatttccaggtatatttccgatacgttataccacatatatgtattgatataccgt
gi|5 : ACATGT-AAAATTTGCAATAAAATATTATT-TAAT-----TAAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgttactggtgttacaaattgatgttttgaacatgtaaaatttgcaataaaatattatttaattaaacc
gi|6 : gtgcagacaataaactcttttacctttttttatattgtcattttcttttaattctttttttttctatagtttattcaaatgtttttataacttgtttttctttaaaacattattataatcactaaaattcaagatatatatttactgctttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgttactggtgttacaaattgatgttttgaTTTG-AGG-T----T-GCAGACGG-TA-ATAA--------A-----ACTTC--GT-TTTTTTCTATATTATTATTTGTT-----ATTCTCG---TTTT-------CTATAGTTTATTGATATGTTTA----CTTTGTTTTTCTTT--AAATCAGTGCTTCA---ATCACTAAAATTCAAGCAAAAAAGTTACTCCTATTACTT----TGCATACGTT----T------------ATGTGTGTGCCTGCATGCTCGCGC--GTG--CG------TGTGAGTGTTTGTTTGCGTATGG------------AAGAGATTGGTATGCTTGTTCAAGGGTATACAAATGTGTTTGTcc
gi|6 : CATGT-CAAATGTGCTATAAAATATTATT-GAGTCTTAATAAAtttgctaaaatattgtcacattaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgttttgagcatgtcaaatgtgctataaaatattattgagtcttaataaat
gi|7 : tttgaggttgcagacggtaataaaacttcgtttttttctatattattatttgttattctcgttttctatagtttattgatatgtttactttgtttttctttaaatcagtgcttcaatcactaaaattcaagcaaaaaagttactcctattactttgcatacgtttatgtgtgtgcctgcatgctcgcgcgtgcgtgtgagtgtttgtttgcgtatggaagagattggtatgcttgttcaagggtatacaaatgtgtttgttttgctaaaatattgtcacattaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgttttgagG-A----T-GCAGACAA-TA-GTAA--------C-----TGTTC-TACCTTTT---TATATTGTCGTTATCTTA-TAATTCTTT---TTTT-----TTCTAATGTTTATTACTATGTTTATATACCTTGTTTTTCTTT--AAAACATTATTATA---ATCACTGAAATTCAAGTAATCTGTTTACTACTTTTTCTTANNNNNNNNNNNNN----N------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------NNNNNNNNNNNNNNNNNNNNNNG------------AAGTGAGTGATATGCTTGTTCGAAAGTAT----ATGTGTTTGTt
gi|7 : aACATGT-AAAATTTGCAATAAAATATTATT-AAAT----ATAAAtcgtatatcaaaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttcgttattggtgttacaaattgatgttttgaacatgtaaaatttgcaataaaatattattaaatataaata
gi|8 : agatgcagacaatagtaactgttctacctttttatattgtcgttatcttataattctttttttttctaatgtttattactatgtttatataccttgtttttctttaaaacattattataatcactgaaattcaagtaatctgtttactactttttcttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaagtgagtgatatgcttgttcgaaagtatatgtgtttgttcgtatatcaaaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttcgttattggtgttacaaattgatgttttgaTCTAAAT-GAAAAAGAAAACGGTCATATGTTCTTAGAAGTACAGAAGTTTATTAAAAACTCTAAACGTTTCAGTCATAATTAGTGT-CAA------AT---------AT---------------TT-----CAT----------------GTCCCTAGATGTTA-ATATGAGACTCAGG--C--GGAATC------------A-TGGGG------G--TGATA---TCC-TTTTTG-GGG-G----T-GCAGACAA-TA-CTAA--------C-----TCTTA-TACCTCTTTTCTTTTTTG--ATAGTC------ATTTTTT---TTTT-----TTCTATAGTTTATCAATATGTGTATATACTTTGTTTTT-TTTAAAAAACATAAGTATA---ATCACTAAAATTCAAGTAAAAAAATTACTGCTTTTTCTT----TGCANNNNNN----N------------NNNNNNNNNNNNNNNNNNNNNNNNNAGTGCAAG------TGAGCGTGCTTGTATGCATGTAG------------AAGTGAGCGATATGCTTGTTCGAAAATGT----ATGTGTTTGta
gi|9 : GGTCATATGTTCTTAGAAGTACAAAC-TTTATTAAAAACTCTTAATGTTTCAGTCATAATAAGATT-GAA------AT---------AG---------------TT-----CAT----------------GTCCTTAGATGTCA-ATATGAGACTCGGG--C--GGAATCAT-------------GGGGG-----A--TGTTA---TCC-AATTTG-AGG-GAGGGT-GCAGACAA-TT-ATAA--------C-----TCTTC-T-TCCCTTTTTTATGTTGTCATTTTCTTT-TCATTCTTTCTTTTTT-----TTCTATAGTTTATTAATATGTTTATATACTT-GTTTTTCTTC--AAAACAGTATTATA---ATCAATAAAAT---------------ATTGCTTTTTCTT----NNNNNNNNNN----N------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGTGAGTAATATGCTTGTTCGAAAGTTA----ATGTGTTTGT
blockSeqs : . G A A A TTAATC AACCATTAACGTTATAGTTCCT T GA . TGAGGGGGTGAG TGGGGGG T GGG T AA GAGGG A A GA AAAAAATA . CTATAT TTTCTA ATA AAAAAT T AA A TGT T G T ANNN T TAAANNNNNNNNN GC C A TG TAC GA TCGTGCGAG T NNNNNNNNNNNA A ACAA A GA CTTAA
blockSeqs : . T A T . . TAACACTAGATTCCCT . GG . TGAGGGG TGGC T . . T AG . . A . . ATATCT TTTTA CTT T T . A . A C A . C C GC C T TT CAA GA ACG T . A . . G A
blockSeqs : . T T A . . GTTTGATTCCCT . . . TAG GG T . . T G . . A . . CTATCT TTTTA . T T . A . T G T . C T CT T G CG CAA GC CTG T . A . . A T
blockSeqs : . G A A . . AGTTCAT . . . TTA TG T . . T G . . A . . CTATCA TTTTC . T T . T . A C A . T T GC C G CA CAT GA ACA A . T . . T A
blockSeqs : . G A A . . ATTTCAT . . . TA TG G . . G T . . A . . TTACCT TTTTC . T T . T . T A A . T T NN T G GG TGC NN AAG A . A . . G .
blockSeqs : . G A G . . ATTTCAT . . . TG CT T . . G T . . A . . CTACCT TTTTA . C T . A . T G T . C T GT N N NN NNN NN NNN A . A . . A .
blockSeqs : . G A T . . ATTTCAT . . . A TA T . . T G . . G . . ATACCT TTTTA . C T . A . T A T . N N NN T C CA CTC NA AAG T . T .
blockSeqs : . . T . . AGTTTAT . . . A AG G . . G G . . A . . TTACC TTATA . C T . A . T G T . N N NN N N NN NNN NN NNN N . T .
blockSeqs : . . ATTTCAT . . . A GA A . . G G . . A . . TTACC TTTTC . T T . T . G C A . N N NN N N NN NNN A CG A . T
blockSeqs : . . AGTTCAT . . . T T T . . G T . . G . . CTTCC T . T . . A . T A T . . . . N N NN NNN A . N
blockSeqs : . G . . . G A . . C . . CGTT T . T . . A . A G T . . . . .
blockSeqs : G G . . A . . AT T . T . . A . . G T
blockSeqs : . . . . . . C . . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqCons : ** TA*********** G* ***** TTTTA* T***** T**************** A****
originalCons : TCTAAAT-GAAAAAGAAAACGGTCATATGTTCTTAGAAGTACAAAAGTTTATTAAAAACTCNAAACGTTTCAGTCATAATTAGTTT-CAA------AT---------AN---------------TT-----CAT----------------GTCCCTAGATGTTA-ATATGAGACTCGGG--C--GGAATCAT----------A-TGGGGT-----G--TGTTA---TCC-TTTTTG-GGG-G----T-GCAGACAA-TA-ATAA--------C-----TCTTC-TATCTTTTTTTTATATTGTCATTTTCTTT-TAATTCTTT---TTTT-----TTCTATAGTTTATTAATATGTTTATATACTTTGTTTTTCTTT--AAAACATTATTATA---ATCACTAAAATTCAAGCAAAATATTTACTGCTTTTTCTT----TGCATACGTG----T------------GTGCGTGCGTGCGCGTGCACGCGCGAGTGCACG------TGNGCGTGTTTGTATGCGTGTGG------------AAGAGAGTGATATGCTTGTTCGAAAGTAT----ATGTGTTCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAACACATGT-AAAATTTGCAATAAAATATTATT-NAAT----ATAAA
finalCons : TCTAAAT-GAAAAAGAAAACGGTCATATGTTCTTAGAAGTACAAAAGTTTATTAAAAACTCNAAACGTTTCAGTCATAATTAGTTT-CAA------AT---------AN---------------TT-----CAT----------------GTCCCTAGATGTTA-ATATGAGACTCGGG--C--GGAATCATA-----------TGGGGT-----G--TGTTA---TCC-TTTTTG-GGG-G----T-GCAGACAA-TA-ATAA--------C-----TCTTC-TATCTTTTTTTTATATTGTCATTTTCTTTTA-ATTCTTT---TTTTT-----TCTATAGTTTATTAATATGTTTATATACTTTGTTTTTCTTT--AAAACATTATTATA---ATCACTAAAATTCAAGCAAAATATTTACTGCTTTTTCTT----TGCATACGTGT----------------GTGCGTGCGTGCGCGTGCACGCGCGAGTGCACG------TGNGCGTGTTTGTATGCGTGTGG------------AAGAGAGTGATATGCTTGTTCGAAAGTAT----ATGTGTTCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAACACATGT-AAAATTTGCAATAAAATATTATT-NAATA----TAAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): ATATATGTATTGTCATTTTAATTTGTACATGCATTTAGACGCGTCGGAGAGGGCTGTAACTACTGTTGTAAATCTAACAGCCCCATCTTTTTGTATGTTATTCATATTGATGCTACAATTAGATGTTTTGAACATATTTTGCAATAGAATATTATAAAACAAAAATGACATTAATGGTTTAAATGTGAACATTGTTCTGCAGATAGATATAAATATTTTAATTTGAAAATTTGAT
Unaligned ( gi|20 ): AAATTGTATATGTATTCTGAAGCACTGAGGAGGATTGTAACTAATGCTGTAACAACGTGTTGCTCGATCCTTTTGTATTTTATCTGTTTTACTTTTTGCCAAA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111111 3333333333333333333333333333333333333333333333333333 11 3333333333333 111111111 111111 1111111 111111 22222222222222222 111111111 222222222222 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 22222
lowQualScore : 5 1 4 2 0 3 000000 1111111111111111111111111111111111111111111111111111 3 00 55 5555555555555 666666666 5 555 3 55 222222 2 2 33 99999999 66666 4444444 777777 999 777777 0 4 0 0 33 2 444 0 0 2 1 1 7777 1 33333333333333333 33 3 1 11 222 44 555555555 1 000000000000 1 9999 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 5 66 77777
lowQualScore : . . . . . . ...... .................................................... . .. .. ............. ......... . ... . .. ...... . . .. ........ ..... ....... ...... ... ...... . . . . .. . ... . . . . . .... . ................. .. . . .. ... .. ......... . ............ . .... ............................................................................................................................................... . .. .....
lowQualScore : 0 1 8 6 2 6 555555 6666666666666666666666666666666666666666666666666666 3 00 00 3333333333333 333333333 3 888 3 88 777777 7 7 88 77777777 77777 3333333 444444 333 111111 7 2 3 8 77 8 777 2 7 7 4 0 7777 1 66666666666666666 77 2 2 00 888 22 555555555 0 555555555555 4 4444 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7 77 99999
consensus : TCTAAAT-GAAAAAGAAAACGGTCATATGTTCTTAGAAGTACAAAAGTTTATTAAAAACTCNAAACGTTTCAGTCATAATTAGTTT-CAA------AT---------AN---------------TT-----CAT----------------GTCCCTAGATGTTA-ATATGAGACTCGGG--C--GGAATCAT----------A-TGGGGT-----G--TGTTA---TCC-TTTTTG-GGG-G----T-GCAGACAA-TA-ATAA--------C-----TCTTC-TATCTTTTTTTTATATTGTCATTTTCTTT-TAATTCTTT---TTTT-----TTCTATAGTTTATTAATATGTTTATATACTTTGTTTTTCTTT--AAAACATTATTATA---ATCACTAAAATTCAAGCAAAATATTTACTGCTTTTTCTT----TGCATACGTG----T------------GTGCGTGCGTGCGCGTGCACGCGCGAGTGCACG------TGNGCGTGTTTGTATGCGTGTGG------------AAGAGAGTGATATGCTTGTTCGAAAGTAT----ATGTGTTCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAACACATGT-AAAATTTGCAATAAAATATTATT-NAAT----ATAAA
Reference ( family-1588 ) : TCTAAAT-GAAAAAGAAAACGGTCATATGTTCTTAGAAGTACAAAAGTTTATTAAAAACTCNAAACGTTTCAGTCATAATTAGTTT-CAA------AT---------AN---------------TT-----CAT----------------GTCCCTAGATGTTA-ATATGAGACTCGGG--C--GGAATCAT----------A-TGGGGT-----G--TGTTA---TCC-TTTTTG-GGG-G----T-GCAGACAA-TA-ATAA--------C-----TCTTC-TATCTTTTTTTTATATTGTCATTTTCTTT-TAATTCTTT---TTTT-----TTCTATAGTTTATTAATATGTTTATATACTTTGTTTTTCTTT--AAAACATTATTATA---ATCACTAAAATTCAAGCAAAATATTTACTGCTTTTTCTT----TGCATACGTG----T------------GTGCGTGCGTGCGCGTGCACGCGCGAGTGCACG------TGNGCGTGTTTGTATGCGTGTGG------------AAGAGAGTGATATGCTTGTTCGAAAGTAT----ATGTGTTCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAACACATGT-AAAATTTGCAATAAAATATTATT-NAAT----ATAAA
gi|1 : CTAAACCAAAAAAGTAAACGCTCATTTGTTCATGAAAGTTCAAAAGTTCATTAAAG------------TCAGTCACAATTAGTTT-CAA------TT---------AA----------------T-----CATAAACGTTTGATTTGCGGTCCCAAGATGTTG-ATATGAGATTTGGG--CGGGGGATCAT----------G-AGGAGG-----G--GG------TCC-GTTTT--GGA-T----T-GCAGACAA-TG-ATAA--------CTAAAATTTTCGTAT-TTTCTTTTAT----TCATTCTC------ATTC----------------CCTATAGTCTAT---TCTCTTTA-A---TTGGATTTTCTTT--AAATCGTTATAATT---ATCACCTAACTTGTAGCATAACAATTACTCCTATTTCGT----AGCGTATGTGTATTT------------GTTTGTGTGTGCGCGTGTACGCGCAAGTGCGTT------TGTG
gi|10 : aagcggttattaaggaacaTCTAAAT-GAAAAATAAAACGGCCATGTATTCTTAGAAGTACAAAAGTTTATTAAAAACTCAAAAAGTTTCAGTCATAATTAGTTTAAAA------AT---------AG---------------TT-----CAT----------------GTCCCTATATGTTATATTT---ACTCGGttcgaacgtattatgtttttatttttttatttgcaataatatcgtcaccttaatttgtatgatgcaatttgacttgtcaggaagggctgtaactaatattgttgaccgacctttttgaacttcgttcattaattatcctacaaattgatgtattgaatatgtaaaatgtgcaataaaatattttttaattaaattagctacactacatattaaatacaataattatgataaaatataaaaatattatttcacaaaatataa
gi|10 : taaaaGGGGG-----G--GGTTA---TCC-CTTTTT-GGG------T-GCACACAA-TA-ATAA--------C-----ACTTC-TATATTTTTT----ATTGTCATTTTCTTT-TAATTCTTT---TTTC-------CTATCATTTATTAATATGTTAATATACA--GTTTTTCTTT--AAAACATTATTATA---ATCACTAAAATTAAAGCAAAATATTTACTGCTTTTTCTT----TGCATGTGTG----C------------GTGCGTGCTTACGTGTGTACGCGCGAGTGtgtgtgtattaactcggtgtgtgtgtggagggggggggggggggggggttatccctttttgggtgcacacaataataacacttctatattttttattgtcattttcttttaattcttttttcctatcatttattaatatgttaatatacagtttttctttaaaacattattataatcactaaaattaaagcaaaatatttactgctttttctttgcatgtgtgcgtgcgtgcttacgtgtgtacgcgcgagtg
gi|11 : taaaatctaaatgaaaaataaaacggccatgtattcttagaagtacaaaagtttattaaaaactcaaaaagtttcagtcataattagtttaaaaatagttcatgtccctatatgttatatttactcggtgtgtgtattaactcggtgtgtgtgtggagggggggggggTGCGTTTGTTTGCAAATGTGAATACACG------TGTGCGTGTTTGTACGCGTGTGG------------TAGAAAATGATATGCTTGCTCGAAAGTAT----ATGACTTCGT
gi|11 : ataCATGT-ACAATTTGCAATGGAATATTATT-CAAT-----TAAAttgtattgcaagaatatcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgttatttgtgctacaaactgatgttttgaacaatcgtcatgtacaatttgcaatggaatattattcaattaaacatataatggcttttattacacacgcctatcatcataacatacatataagtacattcaa
gi|12 : atatgcgtttgtttgcaaatgtgaatacacgtgtgcgtgtttgtacgcgtgtggtagaaaatgatatgcttgctcgaaagtatatgacttcgtttgtattgcaagaatatcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgttatttgtgctacaaactgatgttttgaacaatcgtTTGATTTTCTTT--AAA---------------TCACTAAAATTCAAGCAGAATAATAACTCCTATTTCTT----TGCATACATG----T------------AT--ATGTGTGTGCGTGCAAACTCGCGTGCCTG------CATGTGTATTTGAATGCGTGTGG------------AAGAGAGTAATATGCATGAT-GAAGGTAT----ATGTATcatataatggcttttattacacacgcctatcatcataacatacatataagtacattcaa
gi|13 : actttcaagtttataacataactataaagatttttggttgttgcgtatgaaTCTAAAT-GAAAAAGAAAACGGCCATATGTTCTTAGAAGTACAAAATTTTATTAAAAACTCTAAACGTTTCATTCATAATAAGTTT-CAA------AT---------AT---------------TT-----CAT----------------ATATCTAGATGTTA-ATATGAGACTCGGA--C--GGAAGCATGAGGGGGTGAG-TGGGGT-----GGCTGTTA---TCC-TTTTTT-AGG-G----T-GCAGACAA-TA---AA--------C-----TCTTT-TA-CCTTTTTTTATATTGTCATTTTCTTT-TAATTCTTT---TTTT-----TTCTATAGTTTATTCAAATGTTTTTATAACTTGTTTTTCTTT--AAAACATTATTATA---ATCACTAAAATTCAAGATATATATTTACTGCTTTTTcagtaatcgtcactttaatgtgtatacgcataatgacgcattgtggaagtatgtaactaatgttgttaaaattgtagtccaacaattttccattttattcgttatttatgctacaaaataatgtgttgaaca
gi|14 : aaataaaaaTCTAAAT-GAAAAAGAAAACGGCCATATGTTCTTAGAAGTTCAAAATTTTATTAAAATCTCAACACGTTTCACTCATAATAAGTTT-CAA------AT---------AT---------------TT-----CAT----------------ATCTCTAGATGTTT-ATATGAGACTCGGA--C--GGAAGCATGAGGG-----G-TGGGGTGGGGGG--TGTTA---TCCTTTTTTT-TGG-G----T-GCAGACAA-TA---AA--------C-----TCTTT-TACC--TTTTTTATATTGTCATTTTC-----------TT---TTTT-----TTCTATAGTTTATTCAAATGTTTTTATAACTTATTTTTCTTT--AAAACATTATTATA---ATCACTAAAATTCA
gi|15 : cgagttgttatttggaaataaaaaTCCAAAT-GAAAGAGAAAAGGCTCACGTGTTCTTAGAAGTACAAAAGTTCATTAAAA-CTCAAAACTTTTCAATCATAATTAGTTT-TAA------AT---------AACCATTAACGTTATAGTT-----CCT----------------GTCCGTGGACGTTA-GTATAAGG---GGG--C--GGAA-CA-----------A-TGGGGT-----G--TG--G---TCC-TTTTTG-GGT------T-GCAGACAA-TA-ATAAAAAAAATAC-----TCTT---AT---TTTTTTATATTTTCATTTTTT-----ATTCTTT---CTCT-----TTCTACAATTTATTA---TCTTTA----CTTGGATTTTCTTT--AAGTCATTATTATA---ATCATTCAAc
gi|17 : aagttgttatttgacaacacaaagCAGTCATAATTAATTT-CAATTAATCATTAACACTAGAT---------------TC-----CCT----------------GTCCCTGCATATTT-ATATGATGCTTAGGGAC--GGGATCAT----------AGTCGGGT----------TTAGGGTCC-TTTTGG-AGG-T----T-GCAGACAAATGGATAG--------T-----TCTT---------TTGTTATATC-----TTTGTTT-TCATTCTTTATATTTT-----TTTTAT-GTTTACTtt
gi|18 : TGATTTTCTTT--GAATTATTATTACATGTAT-ATTTAA-CTCTAGCGAAATAATTACTCCTATTTCTT----TG--------------------------TGCATGCTTGCACATA--------AATGT-----------TTCGTGTTTGTTTATGTTTGG------------AAGAAAGTGATATGTTTGTttcttcattcaaattctagcagaataatttctcttatttccttgcgt
gi|19 : GTTTCAAT--TAATTAG------A------AT---------GT---------------TTGATTCCCT----------------GTCTCGAAGTGTTG-ATAGGACATTTGGGGGC--AGAATCAT----------A-TGG--T-----G--TGGAG---TTC-TTATTT-AGG-T----T-GCAAACAA-TA-ATAA--------C-----TCTTC--------TTTTAATATTGT--TTCTTTTT-TCACTCTCA---TTCT-----CTGTAgcatataacaaacaaattgaatatttactaaaa
gi|2 : TCGAAAT-GAAGAAGCAAATTGTCATATGCCATTGGAAGTACAAAAGTTTATCAAAAACTCAAAACGTTTATGTCATAATTAGATT-CAA------AT---------AT---------------TT-----CAT----------------GTCCCTAGAACTTA-ATATGAGACTGGGA--C--GAAGTCAT----------G-TGGGGC-----T--TGTGA---TCC-TTTTTAAGGG-G----TAGCAGACAA-TA-ATAA--------C-----TCTTA-TATCTTTTTTT-ATATTGTCATTATTT-----ATTCTTA---TTTT-----CT-TA-AGTTTATTGATATGTTTATATACTTTGTTGTTCTTT--AA--CATTATTATA---ATCACTAAAATTCAAACAGAATATTTACTACTACTT-TT----TGCATACGTG----T------------GTCTATG--------TGCATGCTCA--TGCACA------TGAGCGTGTTTGTATGCGTGTGG------------AAGAGAGCGATATGTTTGTTCGAAAGTTT----GTGTGTTCGatc
gi|2 : aACATGT-AAAATTTGCAGTAAAATACTATTGAAAT----ATCAAattgtattgctaaaccttcgtcactttaatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaacatgtaaaatttgcagtaaaatactattgaaatatcaaattatctttaaatgtctgattcggaattgctccaccggattcagcccatttatggctgcggagaagg
gi|21 : atcgaaatgaagaagcaaattgtcatatgccattggaagtacaaaagtttatcaaaaactcaaaacgtttatgtcataattagattcaaatatttcatgtccctagaacttaatatgagactgggacgaagtcatgtggggcttgtgatcctttttaaggggtagcagacaataataactcttatatctttttttatattgtcattatttattcttattttcttaagtttattgatatgtttatatactttgttgttctttaacattattataatcactaaaattcaaacagaatatttactactactttttgcatacgtgtgtctatgtgcatgctcatgcacatgagcgtgtttgtatgcgtgtggaagagagcgatatgtttgttcgaaagtttgtgtgttcgattgtattgctaaaccttcgtcactttaatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaACATGT-AAAATTTGCAATAAAATATTGTT-GAAT----TTAAAattatctttaaatgtctgattcggaattgctccaccggattcagcccatttatggctgcggagaagg
gi|3 : gttttgaTCTACAT-GAAAAAGAAAACGGTCACATGTTCTTAGAAGTACAAAAGTTTATTAAAAACTCGAAACGTTTCAGTCATATTTGGTTT-CAA------AA---------AG---------------TT-----TAT----------------GTCCCTAGATGTTA-ATATGAGACTCGGG--C--GGAATCA-----------A-TGGGGT-----A--TGTTA---TCT-TTTTTG-GGA-G----T-GCAGACAA-TA-ATAA--------C-----TCTTC-TATCTTTTTTTTATATTGTCATTTTCTTTCTAATTATTT---TTTT-----CTCTACAGTTTATTAATATGTTTATATATTTTGTTTTTCTTT--CAAACACTATTATA---ATCACTAAAATTCAAGCAAAATATTTACTGCTTTTTCTT----TGCATGTGTG----T------------GTGCGCGTGCGCGGGTGTGCGTGCGAGTGCAAG------TGACCGTGCTTGTATGCGTGTAG------------AAGTGAGTGATATGCTTGTTCGAAATTAT----ATGCATGTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAACACATGTAAAAAATTGCAATAAAATATTATT-AAAT-----TAAAtattaatttcttttagatctacttaaaaatctctcc
gi|4 : GTTA-CAATTATACACGGG--C--GGAATCATT---------A-GGGGGA-----G--GGGTA---TCC-TTTTTG-GGGAG----T-GCAGACAA-TA-GTAA--------C-----TTTTC-TATCATTTTTTTATATTGTCATAT--TTT-TAA-------------AAAAATTCTATAGTTTATTAATATG---------TTTGTTTTTCTTT--AAAACATTTTTATA---AT------------------ATGTTT--TACTTTTTCTT----TGCGTATATA----TAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCGTGCGAGTGAGCGTGTTTGTATGCGTGCGG------------AAGAGAGTGATATGCTTATTCGAAAGTAT----ACGTGTTCGTactaacatata
gi|5 : catatacattaa-G----T-GCAGACAA-TA-A--A--------C-----TCTTT-TACCTTTT-TTTATATTGTCATTTTCTTT-TAATTCTTT---TTTT-----TTCTATAGTTTATTCAAATGTTTTTATAACTTGTTTTTCTTT--AAAACATTATTATA---ATCACTAAAATTCAAGATATATATTTACTGCTTTTTCttgtattgcaaaactatcatcactttaatttgtatgtgcattttgacgcattggggacggctttaactaattgtttaaacttgtagcgcgaaccttttgcattttattcgttatttgtgctacaaactgatattttgcaataaaatattagtaaattaaaaacatgtatacgataatttccaggtatatttccgatacgttataccacatatatgtattgatataccgt
gi|5 : ACATGT-AAAATTTGCAATAAAATATTATT-TAAT-----TAAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgttactggtgttacaaattgatgttttgaacatgtaaaatttgcaataaaatattatttaattaaacc
gi|6 : gtgcagacaataaactcttttacctttttttatattgtcattttcttttaattctttttttttctatagtttattcaaatgtttttataacttgtttttctttaaaacattattataatcactaaaattcaagatatatatttactgctttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgttactggtgttacaaattgatgttttgaTTTG-AGG-T----T-GCAGACGG-TA-ATAA--------A-----ACTTC--GT-TTTTTTCTATATTATTATTTGTT-----ATTCTCG---TTTT-------CTATAGTTTATTGATATGTTTA----CTTTGTTTTTCTTT--AAATCAGTGCTTCA---ATCACTAAAATTCAAGCAAAAAAGTTACTCCTATTACTT----TGCATACGTT----T------------ATGTGTGTGCCTGCATGCTCGCGC--GTG--CG------TGTGAGTGTTTGTTTGCGTATGG------------AAGAGATTGGTATGCTTGTTCAAGGGTATACAAATGTGTTTGTcc
gi|6 : CATGT-CAAATGTGCTATAAAATATTATT-GAGTCTTAATAAAtttgctaaaatattgtcacattaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgttttgagcatgtcaaatgtgctataaaatattattgagtcttaataaat
gi|7 : tttgaggttgcagacggtaataaaacttcgtttttttctatattattatttgttattctcgttttctatagtttattgatatgtttactttgtttttctttaaatcagtgcttcaatcactaaaattcaagcaaaaaagttactcctattactttgcatacgtttatgtgtgtgcctgcatgctcgcgcgtgcgtgtgagtgtttgtttgcgtatggaagagattggtatgcttgttcaagggtatacaaatgtgtttgttttgctaaaatattgtcacattaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgttttgagG-A----T-GCAGACAA-TA-GTAA--------C-----TGTTC-TACCTTTT---TATATTGTCGTTATCTTA-TAATTCTTT---TTTT-----TTCTAATGTTTATTACTATGTTTATATACCTTGTTTTTCTTT--AAAACATTATTATA---ATCACTGAAATTCAAGTAATCTGTTTACTACTTTTTCTTANNNNNNNNNNNNN----N------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------NNNNNNNNNNNNNNNNNNNNNNG------------AAGTGAGTGATATGCTTGTTCGAAAGTAT----ATGTGTTTGTt
gi|7 : aACATGT-AAAATTTGCAATAAAATATTATT-AAAT----ATAAAtcgtatatcaaaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttcgttattggtgttacaaattgatgttttgaacatgtaaaatttgcaataaaatattattaaatataaata
gi|8 : agatgcagacaatagtaactgttctacctttttatattgtcgttatcttataattctttttttttctaatgtttattactatgtttatataccttgtttttctttaaaacattattataatcactgaaattcaagtaatctgtttactactttttcttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaagtgagtgatatgcttgttcgaaagtatatgtgtttgttcgtatatcaaaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttcgttattggtgttacaaattgatgttttgaTCTAAAT-GAAAAAGAAAACGGTCATATGTTCTTAGAAGTACAGAAGTTTATTAAAAACTCTAAACGTTTCAGTCATAATTAGTGT-CAA------AT---------AT---------------TT-----CAT----------------GTCCCTAGATGTTA-ATATGAGACTCAGG--C--GGAATC------------A-TGGGG------G--TGATA---TCC-TTTTTG-GGG-G----T-GCAGACAA-TA-CTAA--------C-----TCTTA-TACCTCTTTTCTTTTTTG--ATAGTC------ATTTTTT---TTTT-----TTCTATAGTTTATCAATATGTGTATATACTTTGTTTTT-TTTAAAAAACATAAGTATA---ATCACTAAAATTCAAGTAAAAAAATTACTGCTTTTTCTT----TGCANNNNNN----N------------NNNNNNNNNNNNNNNNNNNNNNNNNAGTGCAAG------TGAGCGTGCTTGTATGCATGTAG------------AAGTGAGCGATATGCTTGTTCGAAAATGT----ATGTGTTTGta
gi|9 : GGTCATATGTTCTTAGAAGTACAAAC-TTTATTAAAAACTCTTAATGTTTCAGTCATAATAAGATT-GAA------AT---------AG---------------TT-----CAT----------------GTCCTTAGATGTCA-ATATGAGACTCGGG--C--GGAATCAT-------------GGGGG-----A--TGTTA---TCC-AATTTG-AGG-GAGGGT-GCAGACAA-TT-ATAA--------C-----TCTTC-T-TCCCTTTTTTATGTTGTCATTTTCTTT-TCATTCTTTCTTTTTT-----TTCTATAGTTTATTAATATGTTTATATACTT-GTTTTTCTTC--AAAACAGTATTATA---ATCAATAAAAT---------------ATTGCTTTTTCTT----NNNNNNNNNN----N------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGTGAGTAATATGCTTGTTCGAAAGTTA----ATGTGTTTGT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): ATATATGTATTGTCATTTTAATTTGTACATGCATTTAGACGCGTCGGAGAGGGCTGTAACTACTGTTGTAAATCTAACAGCCCCATCTTTTTGTATGTTATTCATATTGATGCTACAATTAGATGTTTTGAACATATTTTGCAATAGAATATTATAAAACAAAAATGACATTAATGGTTTAAATGTGAACATTGTTCTGCAGATAGATATAAATATTTTAATTTGAAAATTTGAT
Unaligned ( gi|20 ): AAATTGTATATGTATTCTGAAGCACTGAGGAGGATTGTAACTAATGCTGTAACAACGTGTTGCTCGATCCTTTTGTATTTTATCTGTTTTACTTTTTGCCAAA