lowQualScore : 11111 5555555555555555555555555555555555555555555 11 111 2 1111111 1
lowQualScore : 2 22222 444 2 99999999 6666666666666666666666666666666666666666666 22 77 3 777 4 6 6 77777 8 2 7 2 2 7 6 44 6 3 0000000 7777 3 3 6 1 2 3 2 7 2
lowQualScore : . ..... ... . ........ ........................................... .. .. . ... . . . ..... . . . . . . . .. . . ....... .... . . . . . . . . .
lowQualScore : 2 55555 444 5 77777777 2222222222222222222222222222222222222222222 77 00 5 555 4 0 0 11111 5 5 5 5 9 3 0 22 2 3 8888888 1111 2 3 7 3 5 1 2 3 5
consensus : TTATCTACATAAGCACTTG-TTAAGACTTATTAGGAAGTTAGAAT-----GCTAGGTGTAAAA---A-AAAA--------GGNNNNNNNNNNN--NN----NNNNNNNNNNNNNNNNNNNNNNNNAACAT--ACCGCCGGCAAAAAGGTT---ATTCAGCCAATCAACCATTCATTCACC-GTGGAACAGGTCTTTTTTCTGTTCCACCCTGCACCTGAGGAAGGCCAAAAAGGAAGCGTTTTTACATGTGAAATGAACACAAACTCTGGCACAAACTTTGAAATTCAGGATTATGTCCA-----AGTGTCGAAATT-GGTTGGTAGTTTTGAAATATTTTCACAGATAT-ATTAAATAT-ATAAAATGAAATTCCTTTTATATATTTAATAATACTTTTTTTAACAGATTCTGTTGAATACCCAATCTAACCTATTGCAATATGGTG--CACATGGTGCAGAACAAATG-AGAATAT-ATT-------GAAAGTGGAAAGGAAAACATTCAAACTACAAAAGCAGAC----AAACTACAAAAGTATACAATAATTATGTT-GTCACCAAATGCTTTTG-AAAAAGGTGTCATTACTTCGCATNCAAAATTGAGTA-ACTGCGAGAGAAAATGAAG-AAAAAAATAACCAAAAAACACCGACCCTTTNATTTTGCAT
Reference ( gi|2 ) : TTATCTACATAAGCACTTG-TTAAGACTTATTAGGAAGTTAGAAT-----GCTAGGTGTAAAA---A-AAAA--------GGNNNNNNNNNNN--NN----NNNNNNNNNNNNNNNNNNNNNNNNAACAT--ACTGCCAGCAAAAAGGTT---ATTCAGCCAATCAACTATTCATTCACC-GTGGAACAGATCTTTTTTCTGTTCCACCCTGCACCTGAAGAAGGCCAAAAAGGAAGCGTTTTTACATGTGAAATGAACACAAACTCTGGCACAAACTTTGAAATTCAGGATTATGTCCA-----AGTGTCAAAATTTGGTTGGTAGTTTTGAAATATTTTCACAGATAT-ATTAAATAT-ATAAAATGAAATTCCTTTTATATATTTAATAATACTTTTTTTAGCAGATTCTGTTGAATACCCAATCTAACCTATTGCAATATGGTG--CACATGGTGCAGAACAAATG-AGAATAT-ATT-------GAAAGTGGAAAGGAAAACATTCAAACTACAAAAGCAGAC----AAACTACAAAAGTATACAATAATTATGTT-GTCACCAAATGCTTTTG-AAAAAGGTGTAATTACTTTGCATGCAAAATTGAGTA-ACTGCGAGAAAAAATGAAG-AAAAAAATAACCAAAAAACACCGACCCTTTGATTTTGCAT
gi|3 : TTATCTACATAAGCACTTG-TTAATACTTATTAGGAAGTTAGAAT-----GCTAGGTGTAAAA---A-AAAA--------AGGNNNNNNNNN-NNNN----NNNNNNNNNNNNNNNNNNNNNNNNAACAT--ACCGCCGGCAAAAAGGTT---ATTCAGCCAATCAACTATTCATTCACT-GTGGAACGGGTCTTTTTTCTGTTCCACCCTGCACCTGAGGAAGGCCAAAAAGGAAGCGTTTTAACATGTGAAACGACCACAAACTCTGGCACAAACTTTGAAATTCAGGATTATGTCCA-----AGTGTCAAAA-TTGGTTGGTAGTTTTGAAATATTTTCACAGATAT-ATTAAATAT-ATAAAATTAAATTCCTTTTATATATTTAATAATAC-TTTTTTAACAGATTCTGTTGAATACCCAATCTAACCTATTGCAATATGGTG--CACATGGTGCAGAACAAATG-AGAATAT-ATT-------GAAAGTGGAAAGGAAAACATTCAAACTACAAAAGCAGAC----AAACTACAAAAGTATACAATAATTATGTT-GTAACCAAATGCTTTTG-AAAAAGGTGTCATTACTTCGCATTCAGAATTGAGTA-ACTGCGAGAGAAAATGAAG-AAAAAAATAACCAAAAAACACCGACCCTTTGATTTTGCAT
gi|4 : TTATCTACATAAGCACTTG-TTAAGACTTATTAGGAAGTTAGAAT-----GCTAGGTGTAAAA---A-AAAA--------A-AAGGNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAT--ACCACCGGCAAAAAGGTT---ATTCAGCCAATCAACTGTTCATTCACC-TTGGAACAGGTCTTTTTTCTGTTCCACCCTGCACCTGAGAAAGGCCAAAAAGGAAGAGTTTTTACATGTGAAATGAACACAAACTCTGGCACAAACTTTGAAATTCAGGATTATGTCCA-----AGTGTCAAAA-TTGGTTGGTAGTTTTGAAATATTTTCACAGATAT-AATAAATAT-ATAAAATGAAATTCCTTTTATATATT---TAATATTTTTTTTAACAGATTCTGTTGAATACCCAATCTAACCTATTGCAATATGGTG--CACATGGTGCAGAACAAATG-AGAATAT-ATT-------GAAAGTGGAAAGGAAAACATTCAAACTACAAAAGCAGAC----AAACTACAAAAGTATACAATAATTATGTT-GTCACCAAATGCTTTTG-AAAAAGGTGTAATTACTTCGCATGCAAAATTGAGTA-ACTGCGAGAGAAAATGAAGAAAAAAAATAACC-AAAATCACCGACCCTTTGATTTTGCA
gi|6 : tTTATCTACATAAGCACTTG-TTAAGACTTATTAGGAAGTTAGAAT-----GCTAGGTGTAAAA---A-AAAAAAAAAAAAGGNNNNNNNNNNN--NN----NNNNNNNNNNNNNNNNNNNNNNNNAACAT--ACAGCTGCCAAAATGGTT---GTTCAGCCAATCAACCATTCATTCACC-ATGGAACAGGTCTTTTTTCTGTTCCACCCTGCACCTGAGAAAGGCCAAAAAGGAAGTGTTTTTACAAGTGAAATGAACACAAACACTGGCACAAACTTTGAAATTCAGGATTATGTCCATTATTAGTGTCGAAATT-GGTTGGTAGTTTTGAAATGTTTTCACAGATAT-ATTAAATAT-ATAAAATGAAATTCCTTTTATATATTTAATAATACCTTTTTTAACAGATTCTGTTGAATACCCAATCTAACCTATTGCAATATGGTG--CACATGTTGCAGAACAAATG-AGAATAT-ACT-------GAAAGTGGAAAGGAAAACATTCAAACTACAAAAGCAGAC----AAACTACAAAAGTATGCAA----TATGTT-GTCACCAAATGCTTTTG-AAAAAGGTGTTATATTTTTGCATGCAAAATTGAGTA-CATGCGAG
gi|7 : tTTATCTACATAAGCACTTG-TTAAGACTTATTAGGAAGTAAGAAT-----GCTAGGTGTAAAA---A-NNNN--------NNNNNNNNNNNNN--NN----NNNNNNNNNNNNNNNNNNNNNNNNAACAT--ACCGCCGGCAAAAAGGTT---TTTCAGCCAATCAACTATTCATTCACCTGAGGAAg
gi|9 : TTATCTACATAAGCACTTG-TTAAGACTTATTAGGAAGTTAGAAT-----GCTAGGTGTAAAA---A-AAAA--------GGNNNNNNNNNNN--NN----NNNNNNNNNNNNNNNNNNNNNNNNAACAC--Aggccaaaaaggaagcgtttttacatgtgaaatgaacacaaactctggcacaaactttgaaattcaggattatgtccaagtgtcaaaattggttggtagttttgaaatattttcacagatataataaatatataaaatgaaattccttttataaatttaataatactttttttaacagattctgttgaatacccaatctaacctattgcagtatggtgcacatggtacagaacaaatgagaatatattgaaagtggaaaggaaaacattcaaactacaaaagcagacaaactacaaaagtatacaataattatgttgtcaccaaatgcttttgaaaaaggtgtaattactttgcatgcaaaattgagtaactgcgagaa
gi|11 : tTTATCTACATAAGCACTTG-TTAAAACTTATTAGGAAGTTAGAATGTAAAGTTAGGTGTAAAA---A-AAAA--------GGNNNNNNNNNNN--NN----NNNNNNNNNNNNNNNNNNNNNNNNAACACAAACT-CTGGCACAAACTTTGAAATTCAGaactctggcacagactttgaaattcaggattatgtccaagtgtcaaaattggttgatacttttgaaatattttcacagatatattaaatatataaaattaaattccttttatatatttattaatacttttttaacagattctgttgaatacccaatctaacctattgcaatatggtgcacatggtgcagagcaaatgagaatatattgaaagtggaaaggaaaacattcaaactacaaaagcagacaaactacaaaagtatacaataattatgttgccaccaaatgcttttgaaaaaggtgtcattactttacattcaaaattgagtaactgcgagagaaaatgaagaaaaaaataaccaaaaaacaccgacccttttattttgcatc
gi|10 : tTTATCTACATAAGCACTTG-TTAAAACTTATTAGGAAGTTAGAATATAAAGTTAGGTGTAAAA---A-AAAA--------AGgattatgtccaagtgtcaaaattggttgatagttttgaaatattttcacagatatattaaatatataaaattaaattccttttatatatttaataatacttttttaacagattctgttgaatacccaatctaacctattgcaagatggtgcacatggtgcagaacaaatgagaatatattgaaagtggaaaggaaaacattcaaactacaaaagcagacaaactacaaaagtatacaataattatgttgtcaccaaatgcttttgaaaaaggtgtcattacttcgcattcaaaattgagtaactgcgagagaaaatgaagaaaaaaataaccaaaaaacacc
gi|12 : TTATCTACATAAGCACTTG-TTAAGACTTATTAGGAAGTTAGAAT-----GCTAGGTGTAAAA---A-AAAA--------GGNNNNNNNNNNN--NN----NNNNNNNNNNNNNNNNNNNNNNNNAACACAAACT-CTGGCACAAACTTTCAAATTCAGgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacacaaactttgaaattcaggattatgtccaagtgtcaaaattggttgatagttttgaaatattttcacagatatattaaatataaaaaaattaaattccttttatatatttaataatacttttttaacagattctgttgaatacccaatctaacctattgcaagatggtgcacatggtgcagaacaaatgagaatatattgaaagtggaaaggaaaacattcaaactacaaaagcagacaaactacaaaagtatacaataattatgttgtcaccaaatgcttttgaaaaaggtgtcattacttcgcattcaaaattgagtaactgcgagagaaaatgaagaaaaaaataaccaaaaaacaccgacccttttattttgcatct
gi|13 : TTATCTACATAAGCACTTG-TTAATACTTATTATGAAGTTAGAAT-----GCTAGGTGTAAAA---A-AAAA--------GGNNNNNNNNNNN--NN----NNNNNNNNNNNNNNNNNNNNNNNNAACACAAACT-CTGGCACAAACTTTGAAATTCAGgattatgtccaagtgtcaaaattggttgatacttttgaaatattttcacagatatattaaatatataaaattaaattccttttatatatttaatagtacttttttaacagattctgttgaatacccaatctaacctattgcaatatggtgcacatggtgcagaacaaatgagaatatattgaaagtggaaaggaaaacattcaaactacaaaagtatacaataattatgttgtcaccaaatgcttttgaaaaaggtgtcattacttcgcattcaaaattgaataactgcaagagaaaatgaaaaaaaaaataaccaaaaaacactgacccttttattttgcatct
gi|17 : tTATCTACATAAGCACTTG-gattatgtccaagtgtcaaaattggttgatacttttgaaatattttcacagatatattaaatatataaaattaaattccttttatatatttaataatacttttttaacagattctgttgaatacccaatctaacctattgcaatatggtgcacatggtgcagaacaaatgagaatttattgaaagtggaaaggaaaacattcaaactacaaaagcagacaaactacaaaagtatacaataattatgttgtcaccaaattgtcattcaaaattgagtaactgcgagagaaaatgaagaaaaaaataaccaaaaaacaccgacccttttattttgcatc
gi|19 : tttctatacagaaaTGTCTACATAAGCACTTG-ATAA----TATT--GAAGTTaaaataaagttttaaaaaagtttctacccgccgaccctgtttttttatggacaaaatcatacttacatggttgaatttttacaaacaaaaaataatagaatgcttctttcaccactttcatattcattcagaaaacttatttgtggtattagagtagttgttgtgatgaataaaattaggattcagacttattaggaaattagaatgctaggtttaaaaaa
gi|22 : ttttatacagcaaaTATCTACATAAGCACTTGATTAtaataaaagtttctacccactgaccctgttttttttgacaaaatcacacttactttacaaacaaaataaaatagaatgcttctttcacaacctccatatattcattcagaaaacttgtttgtggtattagagtagttattgtgatgaataaaattag
gi|15 : tttctatacagcaaaATCTACATAAGCACTTG-TTAAGA-TTATTAGG---------T-----G-TAA----AAAA---A-AAAA--------GGNNNNNNNNNNN--NN----NNNNNNNNNNNNNNNNNNNNNNNNAACAT--ACCGTCGGCAAAAAGGTT---ATTCAGCCAATCAACCATTCATTCACC-GTGGAACAGGTCTTTTTTCTGTTCCACCCTGCACCTGAGGAAGGCCAAAAAGTAAGCGTTTTTACATGTGAAATGAACACGAACTCTGGCACAACCTTTGAAATTCAGGATTATGTCCA-----AGTGTCGAAA-TTGGTTGGTAGTTtaaagtttaaaaaaaggtttctatccagcaaccctgt
gi|5 : tgCTTG-TTAAGACTTATTAGGAAGTTAGAAT-----GCTAGGTGTAAAA---A-AAA---------GGNNNNNNNNNNN--NN----NNNNNNNNNNNNNNNNNNNNNNNNAACAT--ACCGCCGGCAAAAAGGTT---ATTCAGCCAATCAACTATTCATTCACC-TTGGAACAGGTCTTTTT-CTGTTCCACCCTGCACCTGAGGAAGGCCAAAAAGGAAGCGTTTTTACATGTGCAATGAACACAAACACTGGCACAAACTTTGAAATTCAGGATTATGTCCA-----AGTGTCAAAATT-GGTAGGTAGTTTTGAAATATTTTCACAGATAT-ATTAAATAT-ACAAAATGAAATTCCTTTTATATATTTAATAATACTGTTTTTAACATATTCTGTTGAATACCCAATCTAACCTATTGCAATATGGTG--CACATGGTGCAGAACAAATG-AGAATAT-ATT-------G-AAGTGGAAAGGAAAACATTCAAACTACAAAAGCAGAC----ACACTACAAAAGTATACAATAATTATGTT-GCCACCAAATGCTTTTGAAAAAAGGTGTAATTACTTTGCATGCAAAATTGAGTA-ACTGCGAGAGAAAATGAAG-AAAAAAATAACAAAAAAACACCGACCCTTCGATTTTGCA
gi|8 : G-TTCAGACATATTAGGAAGTTAGAAT-----GCTAGGTTTAAAA---A-AAAA--------GGNNNNNNNNNNN--NN----NNNNNNNNNNNNNNNNNNNNNNNNAACAT--ACCGCTGGCAAAAAAGTT---ATTCAGCCAATCAACCATTCATTCACA-GTGGAACAGGTCTTTTTTCTGTTCCACCCTGCACGTGAGGAAGGTCAAAAAGGAAGCGTTTTTACATGTGAAATGAACACAAACTC------------TGAAATTCAGGATTATGTCCA-----AGTGTCAATA-TTGGTTGGTAGTTTTGGAATATTTTCACAGATAT-ATTAAATAT-ATAAAAT
gi|1 : ttttctacacagcaaatatctgcataaaaagcacttgataataaagtttaaaaaagtttctacccagagaccctgttttttttggacaaaatcacacttacgtggttgaagttttacaaacaaaataaaatagaatgctactttcaccacgttcagactcattcagaaaatttatttgtggtattagagtagttgttgtgatgaataaaattaa-TTCAGACTTATTAGGAAGTTAGAAT-----GCTAGGTGTAAAT---ATAAAA--------GGTTTCCCTCATT--CT----TTCCGAAAAAGTTCACATG-----AACAT--ACCGCCAGCAAAAAGGTT---ATTCAGCCAATCCACCATTCATTCACC-GTGGAACAGGTCTTTTTTCTGTTCCACCCTGCACCTGAGGAAGGCCAAAAAGGAAGTGTTTTTACATGTGAAATGAACACAAAATCTGGTGCAAACTTT----------------------------GTTGAAATT-AGTTGGTAGTTTTGAAATATTTTCGCAGATAT-ATTAAATAT-ATAAAATGAAATTCCTTTTATATATTTAATAATACCTTTTTTAACAGATTCTGTCGAATACCCAATCTAACCTATTGCAATATGGTG--CACATAGTGCAGAACAAATG-AGAATAT-ATT-------GAAAGTGGAAAGGAAAACATTCAAACTACAAAAGCAGAC----AAACTACTAAAGTATACAA----TATGTT-GTCACCAAATGCTTTTGAAAAAAGGTGTAATTACTTTGCATGCAAATTTGAGTA-CATGCTAGGGAAAATAAAGAAAAAAAATGACCAAAAAACACTGACCCTTTGATTTTGCAT
gi|17 : ttgacaaaatcacactatgtggttgaatttttacaaacaataaaatagaatgctactttcaccactcattcagaaaacttatttgtggtattagagtagttgttgtcatgaataaaattagga-TTCAGACTTATTAGGAAATTAGAAT-----GCTAGGTTTAAAA---A-A
gi|16 : tttctatacagaaatatctacataagcacttgaaaataaagttttaaaaaagtttctacccgccgaccctgtttttttatggacaaaatcatacttacatggttgaatttttacaaacaaaaaataatagaatgcttctttcaccactttcatattcattcagaaaacttatttgtggtattagagtagttgttgtgatgaataaaattagga-TTCAGACTTATTAGGAATTTAGAAT-----GCTTGGTTTAAAA---A-AAAA--------
gi|14 : ttttatacatcaaatatttaaataagcacttgataataaagttttaatttttttttatcccaacgaccctgtattttttttgacaaaatcacaacttaaatggttgaaattttacaaacaaaataaaatagaatgctactttcaccactttcatattcattcagaaaacttatttgttgtataagagtagttgttgtgatgaataaaattaggaTATTAGAAAGTTAGAAT-----GCTAGGTGTAAAAAAAA-AAAA--------GGNNNNNNNNNNN--NN----NNNNNNNNNNNNNNNNNNNNNNNNAACAT--ACCGCCAGCAAAGAGGTT---ATTCAGCCAATCAACCATTCATTCACC-ATGGAACAGGTCTTTTTTCTGTTCCACCCTTCACCTGAGGAAAGCCAAAAGGGAAGCGTTTTAACATGTGAAATGAACACAAACTCAGGCACAAACTTTGAAATTCAGGATTATGTCCA-----AGTGTCGAAA-TTGGTTGGTAGTTTTGAAATATTTTCACAGATAT-ATTAAATAC-ATAAAATGAAATTCCTTTTATATCTTTAATAAAACCTTTTTTAACAGATTCTGTTGAATACCCAATCT------TT----TTTTGAG--TACAT-GTG-AGAAAAAATGAAGAA
gi|7 : CACCTGAGGAAGGCCAAAAAGGAAGCGTTTTTACATGTGAAATGAACACAAACTCTGGCACAAACTTTGAAATTCAGGATTATGTCCA-----AGTGTCAAAATT-GGTTGGTAGTTTTGAAATATTTTCACAGATAT-AATAAATAT-ATAAAATGAAATTCCTTTTATAAATTTAATAATACTTTTTTTAACAGATTCTGTTGAATACCCAATCTAACCTATTGCAGTATGGTG--CACATGGTACAGAACAAATG-AGAATAT-ATT-------GAAAGTGGAAAGGAAAACATTCAAACTACAAAAGCAGAC----AAACTACAAAAGTATACAATAATTATGTT-GTCACCAAATGCTTTTG-AAAAAGGTGTAATTACTTTGCATGCAAAATTGAGTA-ACTGCGAGAA
gi|9 : ttatctacataagcacttgttaagacttattaggaagtaagaatgctaggtgtaaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacataccgccggcaaaaaggtttttcagccaatcaactattcattAACACAAACTCTGGCACAGACTTTGAAATTCAGGATTATGTCCA-----AGTGTCAAAATT-GGTTGATACTTTTGAAATATTTTCACAGATAT-ATTAAATAT-ATAAAATTAAATTCCTTTTATATATTTATTAATACTTTTTT-AACAGATTCTGTTGAATACCCAATCTAACCTATTGCAATATGGTG--CACATGGTGCAGAGCAAATG-AGAATAT-ATT-------GAAAGTGGAAAGGAAAACATTCAAACTACAAAAGCAGAC----AAACTACAAAAGTATACAATAATTATGTT-GCCACCAAATGCTTTTG-AAAAAGGTGTCATTACTTTACATTCAAAATTGAGTA-ACTGCGAGAGAAAATGAAG-AAAAAAATAACCAAAAAACACCGACCCTTTTATTTTGCAT
gi|11 : tttatctacataagcacttgttaagacttattaggaagttagaatgctaggtgtaaaaaaaaaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAACACAAACTCTGGCACAAACTTTGAAATTCAGGATTATGTCCA-----AGTGTCAAAATT-GGTTGATAGTTTTGAAATATTTTCACAGATAT-ATTAAATAT-ATAAAATTAAATTCCTTTTATATATTTAATAATACTTTTTT-AACAGATTCTGTTGAATACCCAATCTAACCTATTGCAAGATGGTG--CACATGGTGCAGAACAAATG-AGAATAT-ATT-------GAAAGTGGAAAGGAAAACATTCAAACTACAAAAGCAGAC----AAACTACAAAAGTATACAATAATTATGTT-GTCACCAAATGCTTTTG-AAAAAGGTGTCATTACTTCGCATTCAAAATTGAGTA-ACTGCGAGAGAAAATGAAG-AAAAAAATAACCAAAAAACACCc
gi|12 : tttatctacataagcacttgttaaaacttattaggaagttagaatgtaaagttaggtgtaaaaaaaaaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAACACAAACTCTGGCACAAACTTTCAAATTCAGGATTATGTCCA-----AGTGTCAAAATT-GGTTGATACTTTTGAAATATTTTCACAGATAT-ATTAAATAT-ATAAAATTAAATTCCTTTTATATATTTAATAGTACTTTTTT-AACAGATTCTGTTGAATACCCAATCTAACCTATTGCAATATGGTG--CACATGGTGCAGAACAAATG-AGAATAT-ATT-------GAAAGTGGAAAGGAAAACATTCAAACTACAAA---------------------AGTATACAATAATTATGTT-GTCACCAAATGCTTTTG-AAAAAGGTGTCATTACTTCGCATTCAAAATTGAATA-ACTGCAAGAGAAAATGAAA-AAAAAAATAACCAAAAAACACTGACCCTTTTATTTTGCAT
gi|13 : ttatctacataagcacttgttaagacttattaggaagttagaatgctaggtgtaaaaaaaaaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAACACAAACTCTGGCACAAACTTTGAAATTCAGGATTATGTCCA-----AGTGTCAAAATT-GGTTGATACTTTTGAAATATTTTCACAGATAT-ATTAAATAT-ATAAAATTAAATTCCTTTTATATATTTAATAATACTTTTTT-AACAGATTCTGTTGAATACCCAATCTAACCTATTGCAATATGGTG--CACATGGTGCAGAACAAATG-AGAATTT-ATT-------GAAAGTGGAAAGGAAAACATTCAAACTACAAAAGCAGAC----AAACTACAAAAGTATACAATAATTATGTT-GTCACCAAAT---------------TGT----------CATTCAAAATTGAGTA-ACTGCGAGAGAAAATGAAG-AAAAAAATAACCAAAAAACACCGACCCTTTTATTTTGCATct
gi|10 : tttatctacataagcacttgttaatacttattatgaagttagaatgctaggtgtaaaaaaaaaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCACAAACTTTGAAATTCAGGATTATGTCCA-----AGTGTCAAAATT-GGTTGATAGTTTTGAAATATTTTCACAGATAT-ATTAAATATAAAAAAATTAAATTCCTTTTATATATTTAATAATAC-TTTTTTAACAGATTCTGTTGAATACCCAATCTAACCTATTGCAAGATGGTG--CACATGGTGCAGAACAAATG-AGAATAT-ATT-------GAAAGTGGAAAGGAAAACATTCAAACTACAAAAGCAGAC----AAACTACAAAAGTATACAATAATTATGTT-GTCACCAAATGCTTTTG-AAAAAGGTGTCATTACTTCGCATTCAAAATTGAGTA-ACTGCGAGAGAAAATGAAG-AAAAAAATAACCAAAAAACACCGACCCTTTTATTTTGCATc
gi|5 : ttatctacataagcacttgttaaaacttattaggaagttagaatataaagttaggtgtaaaaaaaaaaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaACAG-TATTATTAAATAT-ATAAAAGGAATTTCATTTTGTATATTTAATAct
gi|6 : cttgttaagacttattaggaagttagaatgctaggtgtaaaaaaaaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacataccgccggcaaaaaggttattcagccaatcaactattcattcaccttggaacaggtctttttctgttccaccctgcacctgaggaaggccaaaaaggaagcgtttttacatgtgcaatgaacacaaacactggcacaaactttgaaattcaggattatgtccaagtgtcaaaattggtaggtagttttgaaatattttcacagataAGGTATTATTAAATAT-ATAAAAGGAATTTCATTTTATATATTTAATAttttaacatattctgttgaatacccaatctaacctattgcaatatggtgcacatggtgcagaacaaatgagaatatattgaagtggaaaggaaaacattcaaactacaaaagcagacacactacaaaagtatacaataattatgttgccaccaaatgcttttgaaaaaaggtgtaattactttgcatgcaaaattgagtaactgcgagagaaaatgaagaaaaaaataacaaaaaaacaccgacccttcgattttgca
gi|1 : tttatctacataagcacttgttaagacttattaggaagttagaatgctaggtgtaaaaaaaaaaaaaaaaaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacatacagctgccaaaatggttgttcagccaatcaaccattcattcaccatggaacaggtcttttttctgttccaccctgcacctgagaaaggccaaaaaggaagtgtttttacaagtgaaatgaacacaaacactggcacaaactttgaaattcaggattatgtccattattagtgtcgaaattggttggtagttttgaaatgttttcacagataAGGTATTATTAAATAT-ATAAAAGGAATTTCATTTTATATATTTAATAtttttaacagattctgttgaatacccaatctaacctattgcaatatggtgcacatgttgcagaacaaatgagaatatactgaaagtggaaaggaaaacattcaaactacaaaagcagacaaactacaaaagtatgcaatatgttgtcaccaaatgcttttgaaaaaggtgttatatttttgcatgcaaaattgagtacatgcgagg
gi|20 : ttgacaaaatcacactatgtggttgaatttttacaaacaataaaatagaatgctactttcaccactcattcagaaaacttatttgtggtattagagtagttgttgtcatgaataaaattaggattcagacttattaggaagttagaatgctaggtgtaaatataaaaggtttccctcattctttccgaaaaagttcacatgaacataccgccagcaaaaaggttattcagccaatccaccattcattcaccgtggaacaggtcttttttctgttccaccctgcacctgaggaaggccaaaaaggaagtgtttttacatgtgaaatgaacacaaaatctggtgcaaactttgttgaaattagttggtagttttgaaatattttcgcagataATGGTGTACACAAGGTGCAG--C---TGTATATTATTATTTTAAATAAAAAGTGCAAGGGA------T--GACTACAAAGGCAGACTATTAAACTACAAAAGTATGCAA----TGTGTTAGACACCAAGTG----TG-CCAAAAGCGT-----CTTTGCATGT-------AGCAGACT------AAAAATGAAA-AAAAtttttaacagattctgtcgaatacccaatctaacctattgcaatatggtgcacatagtgcagaacaaatgagaatatattgaaagtggaaaggaaaacattcaaactacaaaagcagacaaactactaaagtatacaatatgttgtcaccaaatgcttttgaaaaaaggtgtaattactttgcatgcaaatttgagtacatgctagggaaaataaagaaaaaaaatgaccaaaaaacactgaccctttgattttgcat
gi|14 : agTTGAGTA-CATGTGAGAAAAAATGAAG-AA
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|18 ): TTTCTATACAGCAGATATATAGATAAGCACTTGATAATACAGTCAAAAAAGGTTTCTACCAACCGTCCCTGGTTGTTTTTTTTAACAAAATCACTCTTACATGGTTGAATTTTTACAAACAAAATAAAAATAGACTGCTACTTTCACCACTTTCATATTCATTCAGAAAACTTATTTGTGGTATTAGAGTAATTGTTGTGATTC
Unaligned ( gi|21 ): TTTCTATACAGCAGATATATACATAAGCACTTGATAATAAAGTTAAAAGAAAGTTTCTACCCACAGACCCTCTTTTTTTTTTTAGACAAAATCACACTTATATGGTTGAATTTTTACAA
Unaligned ( gi|23 ): AATGCTTCTTCATCACTTTCACATTCATTCAGAAAACTTATTTGTGGTATTAAAGTAGTTGTTGTGATG
Alignments
lowQualScore : 11111 11111111 4444444444444444444444444444444444444 1 222 1111111
lowQualScore : 2 11111 444 2 55555555 3333333333333333333333333333333333333 1 000 4 66666 1 2 2 1 2 6 33 5 3 0000000 6666 2 3 6 4 0 5 44 7 1
lowQualScore : . ..... ... . ........ ..................................... . ... . ..... . . . . . . .. . . ....... .... . . . . . . .. . .
lowQualScore : 1 88888 111 4 99999999 8888888888888888888888888888888888888 4 000 0 77777 7 7 9 5 0 1 99 7 1 0000000 5555 3 1 2 7 5 1 66 3 0
consensus : TTATCTACATAAGCACTTG-TTAAGACTTATTAGGAAGTTAGAAT-----GCTAGGTGTAAAA---A-AAAA--------GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAT-ACCGCCGGCAAAAAGGTT---ATTCAGCCAATCAACCATTCATTCACC-GTGGAACAGGTCTTTTTTCTGTTCCACCCTGCACCTGAGGAAGGCCAAAAAGGAAGCGTTTTTACATGTGAAATGAACACAAACTCTGGCACAAACTTTGAAATTCAGGATTATGTCCA-----AGTGTCGAAATT-GGTTGGTAGTTTTGAAATATTTTCACAGATATATTAAATAT-ATAAAATGAAATTCCTTTTATATATTTAATAATACTTTTTTTAACAGATTCTGTTGAATACCCAATCTAACCTATTGCAATATGGTG--CACATGGTGCAGAACAAATG-AGAATAT-ATT-------GAAAGTGGAAAGGAAAACATTCAAACTACAAAAGCAGAC----AAACTACAAAAGTATACAATAATTATGTT-GTCACCAAATGCTTTTG-AAAAAGGTGTCATTACTTCGCATGCAAAATTGAGTAACTGCGAGA--GAAAATGAAG-AAAAAAATAACCAAAAAACACCGACCCTTTGATTTTGCAT
Reference ( family-156 ) : TTATCTACATAAGCACTTG-TTAAGACTTATTAGGAAGTTAGAAT-----GCTAGGTGTAAAA---A-AAAA--------GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAT-ACCGCCGGCAAAAAGGTT---ATTCAGCCAATCAACCATTCATTCACC-GTGGAACAGGTCTTTTTTCTGTTCCACCCTGCACCTGAGGAAGGCCAAAAAGGAAGCGTTTTTACATGTGAAATGAACACAAACTCTGGCACAAACTTTGAAATTCAGGATTATGTCCA-----AGTGTCGAAATT-GGTTGGTAGTTTTGAAATATTTTCACAGATATATTAAATAT-ATAAAATGAAATTCCTTTTATATATTTAATAATACTTTTTTTAACAGATTCTGTTGAATACCCAATCTAACCTATTGCAATATGGTG--CACATGGTGCAGAACAAATG-AGAATAT-ATT-------GAAAGTGGAAAGGAAAACATTCAAACTACAAAAGCAGAC----AAACTACAAAAGTATACAATAATTATGTT-GTCACCAAATGCTTTTG-AAAAAGGTGTCATTACTTCGCATNCAAAATTGAGTAACTGCGAGA--GAAAATGAAG-AAAAAAATAACCAAAAAACACCGACCCTTTNATTTTGCAT
gi|1 : -TTCAGACTTATTAGGAAGTTAGAAT-----GCTAGGTGTAAAT---ATAAAA--------GGTTTCCCTCATTCTTTCCGAAAAAGTTCACATG-----AACAT-ACCGCCAGCAAAAAGGTT---ATTCAGCCAATCCACCATTCATTCACC-GTGGAACAGGTCTTTTTTCTGTTCCACCCTGCACCTGAGGAAGGCCAAAAAGGAAGTGTTTTTACATGTGAAATGAACACAAAATCTGGTGCAAACTT----------------------------TGTTGAAATT-AGTTGGTAGTTTTGAAATATTTTCGCAGATATATTAAATAT-ATAAAATGAAATTCCTTTTATATATTTAATAATACCTTTTTTAACAGATTCTGTCGAATACCCAATCTAACCTATTGCAATATGGTG--CACATAGTGCAGAACAAATG-AGAATAT-ATT-------GAAAGTGGAAAGGAAAACATTCAAACTACAAAAGCAGAC----AAACTACTAAAGTATACAA----TATGTT-GTCACCAAATGCTTTTGAAAAAAGGTGTAATTACTTTGCATGCAAATTTGAGTACATGCTAGG--GAAAATAAAGAAAAAAAATGACCAAAAAACACTGACCCTTTGATTTTGCAT
gi|10 : ttgacaaaatcacactatgtggttgaatttttacaaacaataaaatagaatgctactttcaccactcattcagaaaacttatttgtggtattagagtagttgttgtcatgaataaaattaggaTTATCTACATAAGCACTTG-TTAAAACTTATTAGGAAGTTAGAATATAAAGTTAGGTGTAAAA---A-AAAA--------AG
gi|10 : CACAAACTTTGAAATTCAGGATTATGTCCA-----AGTGTCAAAATT-GGTTGATAGTTTTGAAATATTTTCACAGATATATTAAATATAAAAAAATTAAATTCCTTTTATATATTTAATAATAC-TTTTTTAACAGATTCTGTTGAATACCCAATCTAACCTATTGCAAGATGGTG--CACATGGTGCAGAACAAATG-AGAATAT-ATT-------GAAAGTGGAAAGGAAAACATTCAAACTACAAAAGCAGAC----AAACTACAAAAGTATACAATAATTATGTT-GTCACCAAATGCTTTTG-AAAAAGGTGTCATTACTTCGCATTCAAAATTGAGTAACTGCGAGA--GAAAATGAAG-AAAAAAATAACCAAAAAACACCGACCCTTTTATTTTGCATgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacacaaactttgaaattcaggattatgtccaagtgtcaaaattggttgatagttttgaaatattttcacagatatattaaatataaaaaaattaaattccttttatatatttaataatacttttttaacagattctgttgaatacccaatctaacctattgcaagatggtgcacatggtgcagaacaaatgagaatatattgaaagtggaaaggaaaacattcaaactacaaaagcagacaaactacaaaagtatacaataattatgttgtcaccaaatgcttttgaaaaaggtgtcattacttcgcattcaaaattgagtaactgcgagagaaaatgaagaaaaaaataaccaaaaaacaccgacccttttattttgcatct
gi|11 : ttatctacataagcacttgttaaaacttattaggaagttagaatataaagttaggtgtaaaaaaaaaaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaTTATCTACATAAGCACTTG-TTAAAACTTATTAGGAAGTTAGAATGTAAAGTTAGGTGTAAAA---A-AAAA--------GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACACAAACTCTGGCACAAACTTTGAAATTCAGct
gi|11 : tAACACAAACTCTGGCACAAACTTTGAAATTCAGGATTATGTCCA-----AGTGTCAAAATT-GGTTGATAGTTTTGAAATATTTTCACAGATATATTAAATAT-ATAAAATTAAATTCCTTTTATATATTTAATAATACTTTT-TTAACAGATTCTGTTGAATACCCAATCTAACCTATTGCAAGATGGTG--CACATGGTGCAGAACAAATG-AGAATAT-ATT-------GAAAGTGGAAAGGAAAACATTCAAACTACAAAAGCAGAC----AAACTACAAAAGTATACAATAATTATGTT-GTCACCAAATGCTTTTG-AAAAAGGTGTCATTACTTCGCATTCAAAATTGAGTAACTGCGAGA--GAAAATGAAG-AAAAAAATAACCAAAAAACACCgattatgtccaagtgtcaaaattggttgatagttttgaaatattttcacagatatattaaatatataaaattaaattccttttatatatttaataatacttttttaacagattctgttgaatacccaatctaacctattgcaagatggtgcacatggtgcagaacaaatgagaatatattgaaagtggaaaggaaaacattcaaactacaaaagcagacaaactacaaaagtatacaataattatgttgtcaccaaatgcttttgaaaaaggtgtcattacttcgcattcaaaattgagtaactgcgagagaaaatgaagaaaaaaataaccaaaaaacacc
gi|12 : tttatctacataagcacttgttaaaacttattaggaagttagaatgtaaagttaggtgtaaaaaaaaaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTATCTACATAAGCACTTG-TTAAGACTTATTAGGAAGTTAGAAT-----GCTAGGTGTAAAA---A-AAAA--------GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACACAAACTCTGGCACAAACTTTCAAATTCAG
gi|12 : AACACAAACTCTGGCACAAACTTTCAAATTCAGGATTATGTCCA-----AGTGTCAAAATT-GGTTGATACTTTTGAAATATTTTCACAGATATATTAAATAT-ATAAAATTAAATTCCTTTTATATATTTAATAGTAC-TTTTTTAACAGATTCTGTTGAATACCCAATCTAACCTATTGCAATATGGTG--CACATGGTGCAGAACAAATG-AGAATAT-ATT-------GAAAGTGGAAAGGAAAACATT-----------------C----AAACTACAAAAGTATACAATAATTATGTT-GTCACCAAATGCTTTTG-AAAAAGGTGTCATTACTTCGCATTCAAAATTGAATAACTGCAAGA--GAAAATGAAA-AAAAAAATAACCAAAAAACACTGACCCTTTTATTTTGCATgattatgtccaagtgtcaaaattggttgatacttttgaaatattttcacagatatattaaatatataaaattaaattccttttatatatttaatagtacttttttaacagattctgttgaatacccaatctaacctattgcaatatggtgcacatggtgcagaacaaatgagaatatattgaaagtggaaaggaaaacattcaaactacaaaagtatacaataattatgttgtcaccaaatgcttttgaaaaaggtgtcattacttcgcattcaaaattgaataactgcaagagaaaatgaaaaaaaaaataaccaaaaaacactgacccttttattttgcatct
gi|13 : ttatctacataagcacttgttaagacttattaggaagttagaatgctaggtgtaaaaaaaaaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTATCTACATAAGCACTTG-TTAATACTTATTATGAAGTTAGAAT-----GCTAGGTGTAAAA---A-AAAA--------GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACACAAACTCTGGCACAAACTTTGAAATTCAGct
gi|13 : tAACACAAACTCTGGCACAAACTTTGAAATTCAGGATTATGTCCA-----AGTGTCAAAATT-GGTTGATACTTTTGAAATATTTTCACAGATATATTAAATAT-ATAAAATTAAATTCCTTTTATATATTTAATAATACTTTT-TTAACAGATTCTGTTGAATACCCAATCTAACCTATTGCAATATGGTG--CACATGGTGCAGAACAAATG-AGAATTT-ATT-------GAAAGTGGAAAGGAAAACATTCAAACTACAAAAGCAGAC----AAACTACAAAAGTATACAATAATTATGTT-GTCACCAAAT---------------TGTCATT----------CAAAATTGAGTAACTGCGAGA--GAAAATGAAG-AAAAAAATAACCAAAAAACACCGACCCTTTTATTTTGCATgattatgtccaagtgtcaaaattggttgatacttttgaaatattttcacagatatattaaatatataaaattaaattccttttatatatttaataatacttttttaacagattctgttgaatacccaatctaacctattgcaatatggtgcacatggtgcagaacaaatgagaatttattgaaagtggaaaggaaaacattcaaactacaaaagcagacaaactacaaaagtatacaataattatgttgtcaccaaattgtcattcaaaattgagtaactgcgagagaaaatgaagaaaaaaataaccaaaaaacaccgacccttttattttgcatc
gi|14 : tttatctacataagcacttgttaatacttattatgaagttagaatgctaggtgtaaaaaaaaaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTATTAGAAAGTTAGAAT-----GCTAGGTGTAAAAAAAA-AAAA--------GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAT-ACCGCCAGCAAAGAGGTT---ATTCAGCCAATCAACCATTCATTCACC-ATGGAACAGGTCTTTTTTCTGTTCCACCCTTCACCTGAGGAAAGCCAAAAGGGAAGCGTTTTAACATGTGAAATGAACACAAACTCAGGCACAAACTTTGAAATTCAGGATTATGTCCA-----AGTGTCGAAATT-GGTTGGTAGTTTTGAAATATTTTCACAGATATATTAAATAC-ATAAAATGAAATTCCTTTTATATCTTTAATAAAACCTTTTTTAACAGATTCTGTTGAATACCCAATCT------TT----TTTTGAG--TACAT-GTG-AGAAAAAATGAAGAAc
gi|15 : ATCTACATAAGCACTTG-TTAAGA-TTATTAGG---------T-----G-TAA----AAAA---A-AAAA--------GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAT-ACCGTCGGCAAAAAGGTT---ATTCAGCCAATCAACCATTCATTCACC-GTGGAACAGGTCTTTTTTCTGTTCCACCCTGCACCTGAGGAAGGCCAAAAAGTAAGCGTTTTTACATGTGAAATGAACACGAACTCTGGCACAACCTTTGAAATTCAGGATTATGTCCA-----AGTGTCGAAATT-GGTTGGTAGTT
gi|16 : tg-TTCAGACTTATTAGGAATTTAGAAT-----GCTTGGTTTAAAA---A-AAAA--------
gi|17 : ttttatacatcaaatatttaaataagcacttgataataaagttttaatttttttttatcccaacgaccctgtattttttttgacaaaatcacaacttaaatggttgaaattttacaaacaaaataaaatagaatgctactttcaccactttcatattcattcagaaaacttatttgttgtataagagtagttgttgtgatgaataaaattaggaTATCTACATAAGCACTTG-
gi|17 : tttctatacagaaa-TTCAGACTTATTAGGAAATTAGAAT-----GCTAGGTTTAAAA---A-Aaaaataaagttttaaaaaagtttctacccgccgaccctgtttttttatggacaaaatcatacttacatggttgaatttttacaaacaaaaaataatagaatgcttctttcaccactttcatattcattcagaaaacttatttgtggtattagagtagttgttgtgatgaataaaattaggattcagacttattaggaaattagaatgctaggtttaaaaaa
gi|19 : tttctatacagaaatatctacataagcacttgaaaataaagttttaaaaaagtttctacccgccgaccctgtttttttatggacaaaatcatacttacatggttgaatttttacaaacaaaaaataatagaatgcttctttcaccactttcatattcattcagaaaacttatttgtggtattagagtagttgttgtgatgaataaaattaggaTGTCTACATAAGCACTTG-ATAA----TATT--GAAGTT
gi|2 : ttttatacagcaaaTTATCTACATAAGCACTTG-TTAAGACTTATTAGGAAGTTAGAAT-----GCTAGGTGTAAAA---A-AAAA--------GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAT-ACTGCCAGCAAAAAGGTT---ATTCAGCCAATCAACTATTCATTCACC-GTGGAACAGATCTTTTTTCTGTTCCACCCTGCACCTGAAGAAGGCCAAAAAGGAAGCGTTTTTACATGTGAAATGAACACAAACTCTGGCACAAACTTTGAAATTCAGGATTATGTCCA-----AGTGTCAAAATTTGGTTGGTAGTTTTGAAATATTTTCACAGATATATTAAATAT-ATAAAATGAAATTCCTTTTATATATTTAATAATACTTTTTTTAGCAGATTCTGTTGAATACCCAATCTAACCTATTGCAATATGGTG--CACATGGTGCAGAACAAATG-AGAATAT-ATT-------GAAAGTGGAAAGGAAAACATTCAAACTACAAAAGCAGAC----AAACTACAAAAGTATACAATAATTATGTT-GTCACCAAATGCTTTTG-AAAAAGGTGTAATTACTTTGCATGCAAAATTGAGTAACTGCGAGA--AAAAATGAAG-AAAAAAATAACCAAAAAACACCGACCCTTTGATTTTGCATtaataaaagtttctacccactgaccctgttttttttgacaaaatcacacttactttacaaacaaaataaaatagaatgcttctttcacaacctccatatattcattcagaaaacttgtttgtggtattagagtagttattgtgatgaataaaattag
gi|20 : ATGGTGTACACAAGGTGCAG--C---TGTATATTATTATTTTAAATAAAAAGTGCAAGGGA------T--GACTACAAAGGCAGACTATTAAACTACAAAAGTATGCAA----TGTGTTAGACACCAAGTG----TG-CCAAAAGCGT-----CTTTGCAT----------GTAGC----AGACTAAAAATGAAA-AAAA
gi|22 : agTATCTACATAAGCACTTGATTA
gi|3 : tttctatacagcaaaTTATCTACATAAGCACTTG-TTAATACTTATTAGGAAGTTAGAAT-----GCTAGGTGTAAAA---A-AAAAA-------GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAT-ACCGCCGGCAAAAAGGTT---ATTCAGCCAATCAACTATTCATTCACT-GTGGAACGGGTCTTTTTTCTGTTCCACCCTGCACCTGAGGAAGGCCAAAAAGGAAGCGTTTTAACATGTGAAACGACCACAAACTCTGGCACAAACTTTGAAATTCAGGATTATGTCCA-----AGTGTCAAAATT-GGTTGGTAGTTTTGAAATATTTTCACAGATATATTAAATAT-ATAAAATTAAATTCCTTTTATATATTTAATAATACTTTT-TTAACAGATTCTGTTGAATACCCAATCTAACCTATTGCAATATGGTG--CACATGGTGCAGAACAAATG-AGAATAT-ATT-------GAAAGTGGAAAGGAAAACATTCAAACTACAAAAGCAGAC----AAACTACAAAAGTATACAATAATTATGTT-GTAACCAAATGCTTTTG-AAAAAGGTGTCATTACTTCGCATTCAGAATTGAGTAACTGCGAGA--GAAAATGAAG-AAAAAAATAACCAAAAAACACCGACCCTTTGATTTTGCATtaaagtttaaaaaaaggtttctatccagcaaccctgt
gi|4 : TTATCTACATAAGCACTTG-TTAAGACTTATTAGGAAGTTAGAAT-----GCTAGGTGTAAAA---A-AAAAAAA-----GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAT-ACCACCGGCAAAAAGGTT---ATTCAGCCAATCAACTGTTCATTCACC-TTGGAACAGGTCTTTTTTCTGTTCCACCCTGCACCTGAGAAAGGCCAAAAAGGAAGAGTTTTTACATGTGAAATGAACACAAACTCTGGCACAAACTTTGAAATTCAGGATTATGTCCA-----AGTGTCAAAATT-GGTTGGTAGTTTTGAAATATTTTCACAGATATAATAAATAT-ATAAAATGAAATTCCTTTTATATATTTAATA---TTTTTTTTAACAGATTCTGTTGAATACCCAATCTAACCTATTGCAATATGGTG--CACATGGTGCAGAACAAATG-AGAATAT-ATT-------GAAAGTGGAAAGGAAAACATTCAAACTACAAAAGCAGAC----AAACTACAAAAGTATACAATAATTATGTT-GTCACCAAATGCTTTTG-AAAAAGGTGTAATTACTTCGCATGCAAAATTGAGTAACTGCGAGA--GAAAATGAAGAAAAAAAATAACC-AAAATCACCGACCCTTTGATTTTGCA
gi|5 : tCTTG-TTAAGACTTATTAGGAAGTTAGAAT-----GCTAGGTGTAAAA---A-AAA---------GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAT-ACCGCCGGCAAAAAGGTT---ATTCAGCCAATCAACTATTCATTCACC-TTGGAACAGGTCTTTT-TCTGTTCCACCCTGCACCTGAGGAAGGCCAAAAAGGAAGCGTTTTTACATGTGCAATGAACACAAACACTGGCACAAACTTTGAAATTCAGGATTATGTCCA-----AGTGTCAAAATT-GGTAGGTAGTTTTGAAATATTTTCACAGATATATTAAATAT-ACAAAATGAAATTCCTTTTATATATTTAATAATACTGTTTTTAACATATTCTGTTGAATACCCAATCTAACCTATTGCAATATGGTG--CACATGGTGCAGAACAAATG-AGAATAT-ATT-------G-AAGTGGAAAGGAAAACATTCAAACTACAAAAGCAGAC----ACACTACAAAAGTATACAATAATTATGTT-GCCACCAAATGCTTTTGAAAAAAGGTGTAATTACTTTGCATGCAAAATTGAGTAACTGCGAGA--GAAAATGAAG-AAAAAAATAACAAAAAAACACCGACCCTTCGATTTTGCA
gi|6 : TTATCTACATAAGCACTTG-TTAAGACTTATTAGGAAGTTAGAAT-----GCTAGGTGTAAAA---A-AAAAAAAAAAAAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAT-ACAGCTGCCAAAATGGTT---GTTCAGCCAATCAACCATTCATTCACC-ATGGAACAGGTCTTTTTTCTGTTCCACCCTGCACCTGAGAAAGGCCAAAAAGGAAGTGTTTTTACAAGTGAAATGAACACAAACACTGGCACAAACTTTGAAATTCAGGATTATGTCCATTATTAGTGTCGAAATT-GGTTGGTAGTTTTGAAATGTTTTCACAGATATATTAAATAT-ATAAAATGAAATTCCTTTTATATATTTAATAATACCTTTTTTAACAGATTCTGTTGAATACCCAATCTAACCTATTGCAATATGGTG--CACATGTTGCAGAACAAATG-AGAATAT-ACT-------GAAAGTGGAAAGGAAAACATTCAAACTACAAAAGCAGAC----AAACTACAAAAGTATGCAA----TATGTT-GTCACCAAATGCTTTTG-AAAAAGGTGTTATATTTTTGCATGCAAAATTGAGTACATGCGAG
gi|7 : tTTATCTACATAAGCACTTG-TTAAGACTTATTAGGAAGTAAGAAT-----GCTAGGTGTAAAA---A-NNNN--------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAT-ACCGCCGGCAAAAAGGTT---TTTCAGCCAATCAACTATTCATTCACCTGAGGAAg
gi|7 : CACCTGAGGAAGGCCAAAAAGGAAGCGTTTTTACATGTGAAATGAACACAAACTCTGGCACAAACTTTGAAATTCAGGATTATGTCCA-----AGTGTCAAAATT-GGTTGGTAGTTTTGAAATATTTTCACAGATATAATAAATAT-ATAAAATGAAATTCCTTTTATAAATTTAATAATACTTTTTTTAACAGATTCTGTTGAATACCCAATCTAACCTATTGCAGTATGGTG--CACATGGTACAGAACAAATG-AGAATAT-ATT-------GAAAGTGGAAAGGAAAACATTCAAACTACAAAAGCAGAC----AAACTACAAAAGTATACAATAATTATGTT-GTCACCAAATGCTTTTG-AAAAAGGTGTAATTACTTTGCATGCAAAATTGAGTAACTGCGAGA--ggccaaaaaggaagcgtttttacatgtgaaatgaacacaaactctggcacaaactttgaaattcaggattatgtccaagtgtcaaaattggttggtagttttgaaatattttcacagatataataaatatataaaatgaaattccttttataaatttaataatactttttttaacagattctgttgaatacccaatctaacctattgcagtatggtgcacatggtacagaacaaatgagaatatattgaaagtggaaaggaaaacattcaaactacaaaagcagacaaactacaaaagtatacaataattatgttgtcaccaaatgcttttgaaaaaggtgtaattactttgcatgcaaaattgagtaactgcgagaa
gi|8 : ttatctacataagcacttgttaagacttattaggaagtaagaatgctaggtgtaaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacataccgccggcaaaaaggtttttcagccaatcaactattcattG-TTCAGACATATTAGGAAGTTAGAAT-----GCTAGGTTTAAAA---A-AAAA--------GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAT-ACCGCTGGCAAAAAAGTT---ATTCAGCCAATCAACCATTCATTCACA-GTGGAACAGGTCTTTTTTCTGTTCCACCCTGCACGTGAGGAAGGTCAAAAAGGAAGCGTTTTTACATGTGAAATGAACACAAACTC------------TGAAATTCAGGATTATGTCCA-----AGTGTCAATATT-GGTTGGTAGTTTTGGAATATTTTCACAGATATATTAAATAT-ATAAAATa
gi|9 : ttttctacacagcaaatatctgcataaaaagcacttgataataaagtttaaaaaagtttctacccagagaccctgttttttttggacaaaatcacacttacgtggttgaagttttacaaacaaaataaaatagaatgctactttcaccacgttcagactcattcagaaaatttatttgtggtattagagtagttgttgtgatgaataaaattaaTTATCTACATAAGCACTTG-TTAAGACTTATTAGGAAGTTAGAAT-----GCTAGGTGTAAAA---A-AAAA--------GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACACAAACTCTGGCACAGACTTTGAAATTCAG
gi|9 : tAACACAAACTCTGGCACAGACTTTGAAATTCAGGATTATGTCCA-----AGTGTCAAAATT-GGTTGATACTTTTGAAATATTTTCACAGATATATTAAATAT-ATAAAATTAAATTCCTTTTATATATTTATTAATACTTTT-TTAACAGATTCTGTTGAATACCCAATCTAACCTATTGCAATATGGTG--CACATGGTGCAGAGCAAATG-AGAATAT-ATT-------GAAAGTGGAAAGGAAAACATTCAAACTACAAAAGCAGAC----AAACTACAAAAGTATACAATAATTATGTT-GCCACCAAATGCTTTTG-AAAAAGGTGTCATTACTTTACATTCAAAATTGAGTAACTGCGAGA--GAAAATGAAG-AAAAAAATAACCAAAAAACACCGACCCTTTTATTTTGCATgattatgtccaagtgtcaaaattggttgatacttttgaaatattttcacagatatattaaatatataaaattaaattccttttatatatttattaatacttttttaacagattctgttgaatacccaatctaacctattgcaatatggtgcacatggtgcagagcaaatgagaatatattgaaagtggaaaggaaaacattcaaactacaaaagcagacaaactacaaaagtatacaataattatgttgccaccaaatgcttttgaaaaaggtgtcattactttacattcaaaattgagtaactgcgagagaaaatgaagaaaaaaataaccaaaaaacaccgacccttttattttgcatc
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TTTCTATACAGCAGATATATAGATAAGCACTTGATAATACAGTCAAAAAAGGTTTCTACCAACCGTCCCTGGTTGTTTTTTTTAACAAAATCACTCTTACATGGTTGAATTTTTACAAACAAAATAAAAATAGACTGCTACTTTCACCACTTTCATATTCATTCAGAAAACTTATTTGTGGTATTAGAGTAATTGTTGTGATTC
Unaligned ( gi|21 ): TTTCTATACAGCAGATATATACATAAGCACTTGATAATAAAGTTAAAAGAAAGTTTCTACCCACAGACCCTCTTTTTTTTTTTAGACAAAATCACACTTATATGGTTGAATTTTTACAA
Unaligned ( gi|23 ): AATGCTTCTTCATCACTTTCACATTCATTCAGAAAACTTATTTGTGGTATTAAAGTAGTTGTTGTGATG
Alignments
lowQualScore : 11111 11111111 4444444444444444444444444444444444444 1 222 1111111
lowQualScore : 2 11111 444 2 55555555 3333333333333333333333333333333333333 1 000 4 66666 1 2 2 1 2 6 33 5 3 0000000 6666 2 3 6 4 0 1 7 1
lowQualScore : . ..... ... . ........ ..................................... . ... . ..... . . . . . . .. . . ....... .... . . . . . . . .
lowQualScore : 1 88888 111 4 99999999 8888888888888888888888888888888888888 4 000 0 77777 7 7 9 5 0 1 99 7 1 0000000 5555 3 1 2 7 5 5 3 1
consensus : TTATCTACATAAGCACTTG-TTAAGACTTATTAGGAAGTTAGAAT-----GCTAGGTGTAAAA---A-AAAA--------GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAT-ACCGCCGGCAAAAAGGTT---ATTCAGCCAATCAACCATTCATTCACC-GTGGAACAGGTCTTTTTTCTGTTCCACCCTGCACCTGAGGAAGGCCAAAAAGGAAGCGTTTTTACATGTGAAATGAACACAAACTCTGGCACAAACTTTGAAATTCAGGATTATGTCCA-----AGTGTCGAAATT-GGTTGGTAGTTTTGAAATATTTTCACAGATATATTAAATAT-ATAAAATGAAATTCCTTTTATATATTTAATAATACTTTTTTTAACAGATTCTGTTGAATACCCAATCTAACCTATTGCAATATGGTG--CACATGGTGCAGAACAAATG-AGAATAT-ATT-------GAAAGTGGAAAGGAAAACATTCAAACTACAAAAGCAGAC----AAACTACAAAAGTATACAATAATTATGTT-GTCACCAAATGCTTTTG-AAAAAGGTGTCATTACTTCGCATGCAAAATTGAGTAACTGCGAGAGAAAATGAAG-AAAAAAATAACCAAAAAACACCGACCCTTTGATTTTGCAT
Reference ( family-156 ) : TTATCTACATAAGCACTTG-TTAAGACTTATTAGGAAGTTAGAAT-----GCTAGGTGTAAAA---A-AAAA--------GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAT-ACCGCCGGCAAAAAGGTT---ATTCAGCCAATCAACCATTCATTCACC-GTGGAACAGGTCTTTTTTCTGTTCCACCCTGCACCTGAGGAAGGCCAAAAAGGAAGCGTTTTTACATGTGAAATGAACACAAACTCTGGCACAAACTTTGAAATTCAGGATTATGTCCA-----AGTGTCGAAATT-GGTTGGTAGTTTTGAAATATTTTCACAGATATATTAAATAT-ATAAAATGAAATTCCTTTTATATATTTAATAATACTTTTTTTAACAGATTCTGTTGAATACCCAATCTAACCTATTGCAATATGGTG--CACATGGTGCAGAACAAATG-AGAATAT-ATT-------GAAAGTGGAAAGGAAAACATTCAAACTACAAAAGCAGAC----AAACTACAAAAGTATACAATAATTATGTT-GTCACCAAATGCTTTTG-AAAAAGGTGTCATTACTTCGCATGCAAAATTGAGTAACTGCGAGAGAAAATGAAG-AAAAAAATAACCAAAAAACACCGACCCTTTGATTTTGCAT
gi|1 : -TTCAGACTTATTAGGAAGTTAGAAT-----GCTAGGTGTAAAT---ATAAAA--------GGTTTCCCTCATTCTTTCCGAAAAAGTTCACATG-----AACAT-ACCGCCAGCAAAAAGGTT---ATTCAGCCAATCCACCATTCATTCACC-GTGGAACAGGTCTTTTTTCTGTTCCACCCTGCACCTGAGGAAGGCCAAAAAGGAAGTGTTTTTACATGTGAAATGAACACAAAATCTGGTGCAAACTT----------------------------TGTTGAAATT-AGTTGGTAGTTTTGAAATATTTTCGCAGATATATTAAATAT-ATAAAATGAAATTCCTTTTATATATTTAATAATACCTTTTTTAACAGATTCTGTCGAATACCCAATCTAACCTATTGCAATATGGTG--CACATAGTGCAGAACAAATG-AGAATAT-ATT-------GAAAGTGGAAAGGAAAACATTCAAACTACAAAAGCAGAC----AAACTACTAAAGTATACAA----TATGTT-GTCACCAAATGCTTTTGAAAAAAGGTGTAATTACTTTGCATGCAAATTTGAGTACATGCTAGGGAAAATAAAGAAAAAAAATGACCAAAAAACACTGACCCTTTGATTTTGCAT
gi|10 : ttgacaaaatcacactatgtggttgaatttttacaaacaataaaatagaatgctactttcaccactcattcagaaaacttatttgtggtattagagtagttgttgtcatgaataaaattaggaTTATCTACATAAGCACTTG-TTAAAACTTATTAGGAAGTTAGAATATAAAGTTAGGTGTAAAA---A-AAAA--------AG
gi|10 : CACAAACTTTGAAATTCAGGATTATGTCCA-----AGTGTCAAAATT-GGTTGATAGTTTTGAAATATTTTCACAGATATATTAAATATAAAAAAATTAAATTCCTTTTATATATTTAATAATAC-TTTTTTAACAGATTCTGTTGAATACCCAATCTAACCTATTGCAAGATGGTG--CACATGGTGCAGAACAAATG-AGAATAT-ATT-------GAAAGTGGAAAGGAAAACATTCAAACTACAAAAGCAGAC----AAACTACAAAAGTATACAATAATTATGTT-GTCACCAAATGCTTTTG-AAAAAGGTGTCATTACTTCGCATTCAAAATTGAGTAACTGCGAGAGAAAATGAAG-AAAAAAATAACCAAAAAACACCGACCCTTTTATTTTGCATgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacacaaactttgaaattcaggattatgtccaagtgtcaaaattggttgatagttttgaaatattttcacagatatattaaatataaaaaaattaaattccttttatatatttaataatacttttttaacagattctgttgaatacccaatctaacctattgcaagatggtgcacatggtgcagaacaaatgagaatatattgaaagtggaaaggaaaacattcaaactacaaaagcagacaaactacaaaagtatacaataattatgttgtcaccaaatgcttttgaaaaaggtgtcattacttcgcattcaaaattgagtaactgcgagagaaaatgaagaaaaaaataaccaaaaaacaccgacccttttattttgcatct
gi|11 : ttatctacataagcacttgttaaaacttattaggaagttagaatataaagttaggtgtaaaaaaaaaaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaTTATCTACATAAGCACTTG-TTAAAACTTATTAGGAAGTTAGAATGTAAAGTTAGGTGTAAAA---A-AAAA--------GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACACAAACTCTGGCACAAACTTTGAAATTCAGct
gi|11 : tAACACAAACTCTGGCACAAACTTTGAAATTCAGGATTATGTCCA-----AGTGTCAAAATT-GGTTGATAGTTTTGAAATATTTTCACAGATATATTAAATAT-ATAAAATTAAATTCCTTTTATATATTTAATAATACTTTT-TTAACAGATTCTGTTGAATACCCAATCTAACCTATTGCAAGATGGTG--CACATGGTGCAGAACAAATG-AGAATAT-ATT-------GAAAGTGGAAAGGAAAACATTCAAACTACAAAAGCAGAC----AAACTACAAAAGTATACAATAATTATGTT-GTCACCAAATGCTTTTG-AAAAAGGTGTCATTACTTCGCATTCAAAATTGAGTAACTGCGAGAGAAAATGAAG-AAAAAAATAACCAAAAAACACCgattatgtccaagtgtcaaaattggttgatagttttgaaatattttcacagatatattaaatatataaaattaaattccttttatatatttaataatacttttttaacagattctgttgaatacccaatctaacctattgcaagatggtgcacatggtgcagaacaaatgagaatatattgaaagtggaaaggaaaacattcaaactacaaaagcagacaaactacaaaagtatacaataattatgttgtcaccaaatgcttttgaaaaaggtgtcattacttcgcattcaaaattgagtaactgcgagagaaaatgaagaaaaaaataaccaaaaaacacc
gi|12 : tttatctacataagcacttgttaaaacttattaggaagttagaatgtaaagttaggtgtaaaaaaaaaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTATCTACATAAGCACTTG-TTAAGACTTATTAGGAAGTTAGAAT-----GCTAGGTGTAAAA---A-AAAA--------GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACACAAACTCTGGCACAAACTTTCAAATTCAG
gi|12 : AACACAAACTCTGGCACAAACTTTCAAATTCAGGATTATGTCCA-----AGTGTCAAAATT-GGTTGATACTTTTGAAATATTTTCACAGATATATTAAATAT-ATAAAATTAAATTCCTTTTATATATTTAATAGTAC-TTTTTTAACAGATTCTGTTGAATACCCAATCTAACCTATTGCAATATGGTG--CACATGGTGCAGAACAAATG-AGAATAT-ATT-------GAAAGTGGAAAGGAAAACATT-----------------C----AAACTACAAAAGTATACAATAATTATGTT-GTCACCAAATGCTTTTG-AAAAAGGTGTCATTACTTCGCATTCAAAATTGAATAACTGCAAGAGAAAATGAAA-AAAAAAATAACCAAAAAACACTGACCCTTTTATTTTGCATgattatgtccaagtgtcaaaattggttgatacttttgaaatattttcacagatatattaaatatataaaattaaattccttttatatatttaatagtacttttttaacagattctgttgaatacccaatctaacctattgcaatatggtgcacatggtgcagaacaaatgagaatatattgaaagtggaaaggaaaacattcaaactacaaaagtatacaataattatgttgtcaccaaatgcttttgaaaaaggtgtcattacttcgcattcaaaattgaataactgcaagagaaaatgaaaaaaaaaataaccaaaaaacactgacccttttattttgcatct
gi|13 : ttatctacataagcacttgttaagacttattaggaagttagaatgctaggtgtaaaaaaaaaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTATCTACATAAGCACTTG-TTAATACTTATTATGAAGTTAGAAT-----GCTAGGTGTAAAA---A-AAAA--------GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACACAAACTCTGGCACAAACTTTGAAATTCAGct
gi|13 : tAACACAAACTCTGGCACAAACTTTGAAATTCAGGATTATGTCCA-----AGTGTCAAAATT-GGTTGATACTTTTGAAATATTTTCACAGATATATTAAATAT-ATAAAATTAAATTCCTTTTATATATTTAATAATACTTTT-TTAACAGATTCTGTTGAATACCCAATCTAACCTATTGCAATATGGTG--CACATGGTGCAGAACAAATG-AGAATTT-ATT-------GAAAGTGGAAAGGAAAACATTCAAACTACAAAAGCAGAC----AAACTACAAAAGTATACAATAATTATGTT-GTCACCAAAT---------------TGTCATT----------CAAAATTGAGTAACTGCGAGAGAAAATGAAG-AAAAAAATAACCAAAAAACACCGACCCTTTTATTTTGCATgattatgtccaagtgtcaaaattggttgatacttttgaaatattttcacagatatattaaatatataaaattaaattccttttatatatttaataatacttttttaacagattctgttgaatacccaatctaacctattgcaatatggtgcacatggtgcagaacaaatgagaatttattgaaagtggaaaggaaaacattcaaactacaaaagcagacaaactacaaaagtatacaataattatgttgtcaccaaattgtcattcaaaattgagtaactgcgagagaaaatgaagaaaaaaataaccaaaaaacaccgacccttttattttgcatc
gi|14 : tttatctacataagcacttgttaatacttattatgaagttagaatgctaggtgtaaaaaaaaaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTATTAGAAAGTTAGAAT-----GCTAGGTGTAAAAAAAA-AAAA--------GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAT-ACCGCCAGCAAAGAGGTT---ATTCAGCCAATCAACCATTCATTCACC-ATGGAACAGGTCTTTTTTCTGTTCCACCCTTCACCTGAGGAAAGCCAAAAGGGAAGCGTTTTAACATGTGAAATGAACACAAACTCAGGCACAAACTTTGAAATTCAGGATTATGTCCA-----AGTGTCGAAATT-GGTTGGTAGTTTTGAAATATTTTCACAGATATATTAAATAC-ATAAAATGAAATTCCTTTTATATCTTTAATAAAACCTTTTTTAACAGATTCTGTTGAATACCCAATCT------TT----TTTTGAG--TACAT-GTG-AGAAAAAATGAAGAAc
gi|15 : ATCTACATAAGCACTTG-TTAAGA-TTATTAGG---------T-----G-TAA----AAAA---A-AAAA--------GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAT-ACCGTCGGCAAAAAGGTT---ATTCAGCCAATCAACCATTCATTCACC-GTGGAACAGGTCTTTTTTCTGTTCCACCCTGCACCTGAGGAAGGCCAAAAAGTAAGCGTTTTTACATGTGAAATGAACACGAACTCTGGCACAACCTTTGAAATTCAGGATTATGTCCA-----AGTGTCGAAATT-GGTTGGTAGTT
gi|16 : tg-TTCAGACTTATTAGGAATTTAGAAT-----GCTTGGTTTAAAA---A-AAAA--------
gi|17 : ttttatacatcaaatatttaaataagcacttgataataaagttttaatttttttttatcccaacgaccctgtattttttttgacaaaatcacaacttaaatggttgaaattttacaaacaaaataaaatagaatgctactttcaccactttcatattcattcagaaaacttatttgttgtataagagtagttgttgtgatgaataaaattaggaTATCTACATAAGCACTTG-
gi|17 : tttctatacagaaa-TTCAGACTTATTAGGAAATTAGAAT-----GCTAGGTTTAAAA---A-Aaaaataaagttttaaaaaagtttctacccgccgaccctgtttttttatggacaaaatcatacttacatggttgaatttttacaaacaaaaaataatagaatgcttctttcaccactttcatattcattcagaaaacttatttgtggtattagagtagttgttgtgatgaataaaattaggattcagacttattaggaaattagaatgctaggtttaaaaaa
gi|19 : tttctatacagaaatatctacataagcacttgaaaataaagttttaaaaaagtttctacccgccgaccctgtttttttatggacaaaatcatacttacatggttgaatttttacaaacaaaaaataatagaatgcttctttcaccactttcatattcattcagaaaacttatttgtggtattagagtagttgttgtgatgaataaaattaggaTGTCTACATAAGCACTTG-ATAA----TATT--GAAGTT
gi|2 : ttttatacagcaaaTTATCTACATAAGCACTTG-TTAAGACTTATTAGGAAGTTAGAAT-----GCTAGGTGTAAAA---A-AAAA--------GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAT-ACTGCCAGCAAAAAGGTT---ATTCAGCCAATCAACTATTCATTCACC-GTGGAACAGATCTTTTTTCTGTTCCACCCTGCACCTGAAGAAGGCCAAAAAGGAAGCGTTTTTACATGTGAAATGAACACAAACTCTGGCACAAACTTTGAAATTCAGGATTATGTCCA-----AGTGTCAAAATTTGGTTGGTAGTTTTGAAATATTTTCACAGATATATTAAATAT-ATAAAATGAAATTCCTTTTATATATTTAATAATACTTTTTTTAGCAGATTCTGTTGAATACCCAATCTAACCTATTGCAATATGGTG--CACATGGTGCAGAACAAATG-AGAATAT-ATT-------GAAAGTGGAAAGGAAAACATTCAAACTACAAAAGCAGAC----AAACTACAAAAGTATACAATAATTATGTT-GTCACCAAATGCTTTTG-AAAAAGGTGTAATTACTTTGCATGCAAAATTGAGTAACTGCGAGAAAAAATGAAG-AAAAAAATAACCAAAAAACACCGACCCTTTGATTTTGCATtaataaaagtttctacccactgaccctgttttttttgacaaaatcacacttactttacaaacaaaataaaatagaatgcttctttcacaacctccatatattcattcagaaaacttgtttgtggtattagagtagttattgtgatgaataaaattag
gi|20 : ATGGTGTACACAAGGTGCAG--C---TGTATATTATTATTTTAAATAAAAAGTGCAAGGGA------T--GACTACAAAGGCAGACTATTAAACTACAAAAGTATGCAA----TGTGTTAGACACCAAGTG----TG-CCAAAAGCGT-----CTTTGCATGTAGCA--GACTA----------AAAATGAAA-AAAA
gi|22 : agTATCTACATAAGCACTTGATTA
gi|3 : tttctatacagcaaaTTATCTACATAAGCACTTG-TTAATACTTATTAGGAAGTTAGAAT-----GCTAGGTGTAAAA---A-AAAAA-------GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAT-ACCGCCGGCAAAAAGGTT---ATTCAGCCAATCAACTATTCATTCACT-GTGGAACGGGTCTTTTTTCTGTTCCACCCTGCACCTGAGGAAGGCCAAAAAGGAAGCGTTTTAACATGTGAAACGACCACAAACTCTGGCACAAACTTTGAAATTCAGGATTATGTCCA-----AGTGTCAAAATT-GGTTGGTAGTTTTGAAATATTTTCACAGATATATTAAATAT-ATAAAATTAAATTCCTTTTATATATTTAATAATACTTTT-TTAACAGATTCTGTTGAATACCCAATCTAACCTATTGCAATATGGTG--CACATGGTGCAGAACAAATG-AGAATAT-ATT-------GAAAGTGGAAAGGAAAACATTCAAACTACAAAAGCAGAC----AAACTACAAAAGTATACAATAATTATGTT-GTAACCAAATGCTTTTG-AAAAAGGTGTCATTACTTCGCATTCAGAATTGAGTAACTGCGAGAGAAAATGAAG-AAAAAAATAACCAAAAAACACCGACCCTTTGATTTTGCATtaaagtttaaaaaaaggtttctatccagcaaccctgt
gi|4 : TTATCTACATAAGCACTTG-TTAAGACTTATTAGGAAGTTAGAAT-----GCTAGGTGTAAAA---A-AAAAAAA-----GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAT-ACCACCGGCAAAAAGGTT---ATTCAGCCAATCAACTGTTCATTCACC-TTGGAACAGGTCTTTTTTCTGTTCCACCCTGCACCTGAGAAAGGCCAAAAAGGAAGAGTTTTTACATGTGAAATGAACACAAACTCTGGCACAAACTTTGAAATTCAGGATTATGTCCA-----AGTGTCAAAATT-GGTTGGTAGTTTTGAAATATTTTCACAGATATAATAAATAT-ATAAAATGAAATTCCTTTTATATATTTAATA---TTTTTTTTAACAGATTCTGTTGAATACCCAATCTAACCTATTGCAATATGGTG--CACATGGTGCAGAACAAATG-AGAATAT-ATT-------GAAAGTGGAAAGGAAAACATTCAAACTACAAAAGCAGAC----AAACTACAAAAGTATACAATAATTATGTT-GTCACCAAATGCTTTTG-AAAAAGGTGTAATTACTTCGCATGCAAAATTGAGTAACTGCGAGAGAAAATGAAGAAAAAAAATAACC-AAAATCACCGACCCTTTGATTTTGCA
gi|5 : tCTTG-TTAAGACTTATTAGGAAGTTAGAAT-----GCTAGGTGTAAAA---A-AAA---------GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAT-ACCGCCGGCAAAAAGGTT---ATTCAGCCAATCAACTATTCATTCACC-TTGGAACAGGTCTTTT-TCTGTTCCACCCTGCACCTGAGGAAGGCCAAAAAGGAAGCGTTTTTACATGTGCAATGAACACAAACACTGGCACAAACTTTGAAATTCAGGATTATGTCCA-----AGTGTCAAAATT-GGTAGGTAGTTTTGAAATATTTTCACAGATATATTAAATAT-ACAAAATGAAATTCCTTTTATATATTTAATAATACTGTTTTTAACATATTCTGTTGAATACCCAATCTAACCTATTGCAATATGGTG--CACATGGTGCAGAACAAATG-AGAATAT-ATT-------G-AAGTGGAAAGGAAAACATTCAAACTACAAAAGCAGAC----ACACTACAAAAGTATACAATAATTATGTT-GCCACCAAATGCTTTTGAAAAAAGGTGTAATTACTTTGCATGCAAAATTGAGTAACTGCGAGAGAAAATGAAG-AAAAAAATAACAAAAAAACACCGACCCTTCGATTTTGCA
gi|6 : TTATCTACATAAGCACTTG-TTAAGACTTATTAGGAAGTTAGAAT-----GCTAGGTGTAAAA---A-AAAAAAAAAAAAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAT-ACAGCTGCCAAAATGGTT---GTTCAGCCAATCAACCATTCATTCACC-ATGGAACAGGTCTTTTTTCTGTTCCACCCTGCACCTGAGAAAGGCCAAAAAGGAAGTGTTTTTACAAGTGAAATGAACACAAACACTGGCACAAACTTTGAAATTCAGGATTATGTCCATTATTAGTGTCGAAATT-GGTTGGTAGTTTTGAAATGTTTTCACAGATATATTAAATAT-ATAAAATGAAATTCCTTTTATATATTTAATAATACCTTTTTTAACAGATTCTGTTGAATACCCAATCTAACCTATTGCAATATGGTG--CACATGTTGCAGAACAAATG-AGAATAT-ACT-------GAAAGTGGAAAGGAAAACATTCAAACTACAAAAGCAGAC----AAACTACAAAAGTATGCAA----TATGTT-GTCACCAAATGCTTTTG-AAAAAGGTGTTATATTTTTGCATGCAAAATTGAGTACATGCGAG
gi|7 : tTTATCTACATAAGCACTTG-TTAAGACTTATTAGGAAGTAAGAAT-----GCTAGGTGTAAAA---A-NNNN--------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAT-ACCGCCGGCAAAAAGGTT---TTTCAGCCAATCAACTATTCATTCACCTGAGGAAg
gi|7 : CACCTGAGGAAGGCCAAAAAGGAAGCGTTTTTACATGTGAAATGAACACAAACTCTGGCACAAACTTTGAAATTCAGGATTATGTCCA-----AGTGTCAAAATT-GGTTGGTAGTTTTGAAATATTTTCACAGATATAATAAATAT-ATAAAATGAAATTCCTTTTATAAATTTAATAATACTTTTTTTAACAGATTCTGTTGAATACCCAATCTAACCTATTGCAGTATGGTG--CACATGGTACAGAACAAATG-AGAATAT-ATT-------GAAAGTGGAAAGGAAAACATTCAAACTACAAAAGCAGAC----AAACTACAAAAGTATACAATAATTATGTT-GTCACCAAATGCTTTTG-AAAAAGGTGTAATTACTTTGCATGCAAAATTGAGTAACTGCGAGAggccaaaaaggaagcgtttttacatgtgaaatgaacacaaactctggcacaaactttgaaattcaggattatgtccaagtgtcaaaattggttggtagttttgaaatattttcacagatataataaatatataaaatgaaattccttttataaatttaataatactttttttaacagattctgttgaatacccaatctaacctattgcagtatggtgcacatggtacagaacaaatgagaatatattgaaagtggaaaggaaaacattcaaactacaaaagcagacaaactacaaaagtatacaataattatgttgtcaccaaatgcttttgaaaaaggtgtaattactttgcatgcaaaattgagtaactgcgagaa
gi|8 : ttatctacataagcacttgttaagacttattaggaagtaagaatgctaggtgtaaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacataccgccggcaaaaaggtttttcagccaatcaactattcattG-TTCAGACATATTAGGAAGTTAGAAT-----GCTAGGTTTAAAA---A-AAAA--------GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAT-ACCGCTGGCAAAAAAGTT---ATTCAGCCAATCAACCATTCATTCACA-GTGGAACAGGTCTTTTTTCTGTTCCACCCTGCACGTGAGGAAGGTCAAAAAGGAAGCGTTTTTACATGTGAAATGAACACAAACTC------------TGAAATTCAGGATTATGTCCA-----AGTGTCAATATT-GGTTGGTAGTTTTGGAATATTTTCACAGATATATTAAATAT-ATAAAATa
gi|9 : ttttctacacagcaaatatctgcataaaaagcacttgataataaagtttaaaaaagtttctacccagagaccctgttttttttggacaaaatcacacttacgtggttgaagttttacaaacaaaataaaatagaatgctactttcaccacgttcagactcattcagaaaatttatttgtggtattagagtagttgttgtgatgaataaaattaaTTATCTACATAAGCACTTG-TTAAGACTTATTAGGAAGTTAGAAT-----GCTAGGTGTAAAA---A-AAAA--------GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACACAAACTCTGGCACAGACTTTGAAATTCAG
gi|9 : tAACACAAACTCTGGCACAGACTTTGAAATTCAGGATTATGTCCA-----AGTGTCAAAATT-GGTTGATACTTTTGAAATATTTTCACAGATATATTAAATAT-ATAAAATTAAATTCCTTTTATATATTTATTAATACTTTT-TTAACAGATTCTGTTGAATACCCAATCTAACCTATTGCAATATGGTG--CACATGGTGCAGAGCAAATG-AGAATAT-ATT-------GAAAGTGGAAAGGAAAACATTCAAACTACAAAAGCAGAC----AAACTACAAAAGTATACAATAATTATGTT-GCCACCAAATGCTTTTG-AAAAAGGTGTCATTACTTTACATTCAAAATTGAGTAACTGCGAGAGAAAATGAAG-AAAAAAATAACCAAAAAACACCGACCCTTTTATTTTGCATgattatgtccaagtgtcaaaattggttgatacttttgaaatattttcacagatatattaaatatataaaattaaattccttttatatatttattaatacttttttaacagattctgttgaatacccaatctaacctattgcaatatggtgcacatggtgcagagcaaatgagaatatattgaaagtggaaaggaaaacattcaaactacaaaagcagacaaactacaaaagtatacaataattatgttgccaccaaatgcttttgaaaaaggtgtcattactttacattcaaaattgagtaactgcgagagaaaatgaagaaaaaaataaccaaaaaacaccgacccttttattttgcatc
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TTTCTATACAGCAGATATATAGATAAGCACTTGATAATACAGTCAAAAAAGGTTTCTACCAACCGTCCCTGGTTGTTTTTTTTAACAAAATCACTCTTACATGGTTGAATTTTTACAAACAAAATAAAAATAGACTGCTACTTTCACCACTTTCATATTCATTCAGAAAACTTATTTGTGGTATTAGAGTAATTGTTGTGATTC
Unaligned ( gi|21 ): TTTCTATACAGCAGATATATACATAAGCACTTGATAATAAAGTTAAAAGAAAGTTTCTACCCACAGACCCTCTTTTTTTTTTTAGACAAAATCACACTTATATGGTTGAATTTTTACAA
Unaligned ( gi|23 ): AATGCTTCTTCATCACTTTCACATTCATTCAGAAAACTTATTTGTGGTATTAAAGTAGTTGTTGTGATG
Alignments
lowQualScore : 11111 11111111 4444444444444444444444444444444444444 1 222 1111111
lowQualScore : 2 11111 444 2 55555555 3333333333333333333333333333333333333 1 000 4 66666 1 2 2 1 2 6 33 5 3 0000000 6666 2 3 6 4 0 1 7 1
lowQualScore : . ..... ... . ........ ..................................... . ... . ..... . . . . . . .. . . ....... .... . . . . . . . .
lowQualScore : 1 88888 111 4 99999999 8888888888888888888888888888888888888 4 000 0 77777 7 7 9 5 0 1 99 7 1 0000000 5555 3 1 2 7 5 5 3 1
consensus : TTATCTACATAAGCACTTG-TTAAGACTTATTAGGAAGTTAGAAT-----GCTAGGTGTAAAA---A-AAAA--------GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAT-ACCGCCGGCAAAAAGGTT---ATTCAGCCAATCAACCATTCATTCACC-GTGGAACAGGTCTTTTTTCTGTTCCACCCTGCACCTGAGGAAGGCCAAAAAGGAAGCGTTTTTACATGTGAAATGAACACAAACTCTGGCACAAACTTTGAAATTCAGGATTATGTCCA-----AGTGTCGAAATT-GGTTGGTAGTTTTGAAATATTTTCACAGATATATTAAATAT-ATAAAATGAAATTCCTTTTATATATTTAATAATACTTTTTTTAACAGATTCTGTTGAATACCCAATCTAACCTATTGCAATATGGTG--CACATGGTGCAGAACAAATG-AGAATAT-ATT-------GAAAGTGGAAAGGAAAACATTCAAACTACAAAAGCAGAC----AAACTACAAAAGTATACAATAATTATGTT-GTCACCAAATGCTTTTG-AAAAAGGTGTCATTACTTCGCATGCAAAATTGAGTAACTGCGAGAGAAAATGAAG-AAAAAAATAACCAAAAAACACCGACCCTTTGATTTTGCAT
Reference ( family-156 ) : TTATCTACATAAGCACTTG-TTAAGACTTATTAGGAAGTTAGAAT-----GCTAGGTGTAAAA---A-AAAA--------GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAT-ACCGCCGGCAAAAAGGTT---ATTCAGCCAATCAACCATTCATTCACC-GTGGAACAGGTCTTTTTTCTGTTCCACCCTGCACCTGAGGAAGGCCAAAAAGGAAGCGTTTTTACATGTGAAATGAACACAAACTCTGGCACAAACTTTGAAATTCAGGATTATGTCCA-----AGTGTCGAAATT-GGTTGGTAGTTTTGAAATATTTTCACAGATATATTAAATAT-ATAAAATGAAATTCCTTTTATATATTTAATAATACTTTTTTTAACAGATTCTGTTGAATACCCAATCTAACCTATTGCAATATGGTG--CACATGGTGCAGAACAAATG-AGAATAT-ATT-------GAAAGTGGAAAGGAAAACATTCAAACTACAAAAGCAGAC----AAACTACAAAAGTATACAATAATTATGTT-GTCACCAAATGCTTTTG-AAAAAGGTGTCATTACTTCGCATGCAAAATTGAGTAACTGCGAGAGAAAATGAAG-AAAAAAATAACCAAAAAACACCGACCCTTTGATTTTGCAT
gi|1 : -TTCAGACTTATTAGGAAGTTAGAAT-----GCTAGGTGTAAAT---ATAAAA--------GGTTTCCCTCATTCTTTCCGAAAAAGTTCACATG-----AACAT-ACCGCCAGCAAAAAGGTT---ATTCAGCCAATCCACCATTCATTCACC-GTGGAACAGGTCTTTTTTCTGTTCCACCCTGCACCTGAGGAAGGCCAAAAAGGAAGTGTTTTTACATGTGAAATGAACACAAAATCTGGTGCAAACTT----------------------------TGTTGAAATT-AGTTGGTAGTTTTGAAATATTTTCGCAGATATATTAAATAT-ATAAAATGAAATTCCTTTTATATATTTAATAATACCTTTTTTAACAGATTCTGTCGAATACCCAATCTAACCTATTGCAATATGGTG--CACATAGTGCAGAACAAATG-AGAATAT-ATT-------GAAAGTGGAAAGGAAAACATTCAAACTACAAAAGCAGAC----AAACTACTAAAGTATACAA----TATGTT-GTCACCAAATGCTTTTGAAAAAAGGTGTAATTACTTTGCATGCAAATTTGAGTACATGCTAGGGAAAATAAAGAAAAAAAATGACCAAAAAACACTGACCCTTTGATTTTGCAT
gi|10 : ttgacaaaatcacactatgtggttgaatttttacaaacaataaaatagaatgctactttcaccactcattcagaaaacttatttgtggtattagagtagttgttgtcatgaataaaattaggaTTATCTACATAAGCACTTG-TTAAAACTTATTAGGAAGTTAGAATATAAAGTTAGGTGTAAAA---A-AAAA--------AG
gi|10 : CACAAACTTTGAAATTCAGGATTATGTCCA-----AGTGTCAAAATT-GGTTGATAGTTTTGAAATATTTTCACAGATATATTAAATATAAAAAAATTAAATTCCTTTTATATATTTAATAATAC-TTTTTTAACAGATTCTGTTGAATACCCAATCTAACCTATTGCAAGATGGTG--CACATGGTGCAGAACAAATG-AGAATAT-ATT-------GAAAGTGGAAAGGAAAACATTCAAACTACAAAAGCAGAC----AAACTACAAAAGTATACAATAATTATGTT-GTCACCAAATGCTTTTG-AAAAAGGTGTCATTACTTCGCATTCAAAATTGAGTAACTGCGAGAGAAAATGAAG-AAAAAAATAACCAAAAAACACCGACCCTTTTATTTTGCATgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacacaaactttgaaattcaggattatgtccaagtgtcaaaattggttgatagttttgaaatattttcacagatatattaaatataaaaaaattaaattccttttatatatttaataatacttttttaacagattctgttgaatacccaatctaacctattgcaagatggtgcacatggtgcagaacaaatgagaatatattgaaagtggaaaggaaaacattcaaactacaaaagcagacaaactacaaaagtatacaataattatgttgtcaccaaatgcttttgaaaaaggtgtcattacttcgcattcaaaattgagtaactgcgagagaaaatgaagaaaaaaataaccaaaaaacaccgacccttttattttgcatct
gi|11 : ttatctacataagcacttgttaaaacttattaggaagttagaatataaagttaggtgtaaaaaaaaaaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaTTATCTACATAAGCACTTG-TTAAAACTTATTAGGAAGTTAGAATGTAAAGTTAGGTGTAAAA---A-AAAA--------GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACACAAACTCTGGCACAAACTTTGAAATTCAGct
gi|11 : tAACACAAACTCTGGCACAAACTTTGAAATTCAGGATTATGTCCA-----AGTGTCAAAATT-GGTTGATAGTTTTGAAATATTTTCACAGATATATTAAATAT-ATAAAATTAAATTCCTTTTATATATTTAATAATACTTTT-TTAACAGATTCTGTTGAATACCCAATCTAACCTATTGCAAGATGGTG--CACATGGTGCAGAACAAATG-AGAATAT-ATT-------GAAAGTGGAAAGGAAAACATTCAAACTACAAAAGCAGAC----AAACTACAAAAGTATACAATAATTATGTT-GTCACCAAATGCTTTTG-AAAAAGGTGTCATTACTTCGCATTCAAAATTGAGTAACTGCGAGAGAAAATGAAG-AAAAAAATAACCAAAAAACACCgattatgtccaagtgtcaaaattggttgatagttttgaaatattttcacagatatattaaatatataaaattaaattccttttatatatttaataatacttttttaacagattctgttgaatacccaatctaacctattgcaagatggtgcacatggtgcagaacaaatgagaatatattgaaagtggaaaggaaaacattcaaactacaaaagcagacaaactacaaaagtatacaataattatgttgtcaccaaatgcttttgaaaaaggtgtcattacttcgcattcaaaattgagtaactgcgagagaaaatgaagaaaaaaataaccaaaaaacacc
gi|12 : tttatctacataagcacttgttaaaacttattaggaagttagaatgtaaagttaggtgtaaaaaaaaaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTATCTACATAAGCACTTG-TTAAGACTTATTAGGAAGTTAGAAT-----GCTAGGTGTAAAA---A-AAAA--------GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACACAAACTCTGGCACAAACTTTCAAATTCAG
gi|12 : AACACAAACTCTGGCACAAACTTTCAAATTCAGGATTATGTCCA-----AGTGTCAAAATT-GGTTGATACTTTTGAAATATTTTCACAGATATATTAAATAT-ATAAAATTAAATTCCTTTTATATATTTAATAGTAC-TTTTTTAACAGATTCTGTTGAATACCCAATCTAACCTATTGCAATATGGTG--CACATGGTGCAGAACAAATG-AGAATAT-ATT-------GAAAGTGGAAAGGAAAACATT-----------------C----AAACTACAAAAGTATACAATAATTATGTT-GTCACCAAATGCTTTTG-AAAAAGGTGTCATTACTTCGCATTCAAAATTGAATAACTGCAAGAGAAAATGAAA-AAAAAAATAACCAAAAAACACTGACCCTTTTATTTTGCATgattatgtccaagtgtcaaaattggttgatacttttgaaatattttcacagatatattaaatatataaaattaaattccttttatatatttaatagtacttttttaacagattctgttgaatacccaatctaacctattgcaatatggtgcacatggtgcagaacaaatgagaatatattgaaagtggaaaggaaaacattcaaactacaaaagtatacaataattatgttgtcaccaaatgcttttgaaaaaggtgtcattacttcgcattcaaaattgaataactgcaagagaaaatgaaaaaaaaaataaccaaaaaacactgacccttttattttgcatct
gi|13 : ttatctacataagcacttgttaagacttattaggaagttagaatgctaggtgtaaaaaaaaaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTATCTACATAAGCACTTG-TTAATACTTATTATGAAGTTAGAAT-----GCTAGGTGTAAAA---A-AAAA--------GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACACAAACTCTGGCACAAACTTTGAAATTCAGct
gi|13 : tAACACAAACTCTGGCACAAACTTTGAAATTCAGGATTATGTCCA-----AGTGTCAAAATT-GGTTGATACTTTTGAAATATTTTCACAGATATATTAAATAT-ATAAAATTAAATTCCTTTTATATATTTAATAATACTTTT-TTAACAGATTCTGTTGAATACCCAATCTAACCTATTGCAATATGGTG--CACATGGTGCAGAACAAATG-AGAATTT-ATT-------GAAAGTGGAAAGGAAAACATTCAAACTACAAAAGCAGAC----AAACTACAAAAGTATACAATAATTATGTT-GTCACCAAAT---------------TGTCATT----------CAAAATTGAGTAACTGCGAGAGAAAATGAAG-AAAAAAATAACCAAAAAACACCGACCCTTTTATTTTGCATgattatgtccaagtgtcaaaattggttgatacttttgaaatattttcacagatatattaaatatataaaattaaattccttttatatatttaataatacttttttaacagattctgttgaatacccaatctaacctattgcaatatggtgcacatggtgcagaacaaatgagaatttattgaaagtggaaaggaaaacattcaaactacaaaagcagacaaactacaaaagtatacaataattatgttgtcaccaaattgtcattcaaaattgagtaactgcgagagaaaatgaagaaaaaaataaccaaaaaacaccgacccttttattttgcatc
gi|14 : tttatctacataagcacttgttaatacttattatgaagttagaatgctaggtgtaaaaaaaaaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTATTAGAAAGTTAGAAT-----GCTAGGTGTAAAAAAAA-AAAA--------GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAT-ACCGCCAGCAAAGAGGTT---ATTCAGCCAATCAACCATTCATTCACC-ATGGAACAGGTCTTTTTTCTGTTCCACCCTTCACCTGAGGAAAGCCAAAAGGGAAGCGTTTTAACATGTGAAATGAACACAAACTCAGGCACAAACTTTGAAATTCAGGATTATGTCCA-----AGTGTCGAAATT-GGTTGGTAGTTTTGAAATATTTTCACAGATATATTAAATAC-ATAAAATGAAATTCCTTTTATATCTTTAATAAAACCTTTTTTAACAGATTCTGTTGAATACCCAATCT------TT----TTTTGAG--TACAT-GTG-AGAAAAAATGAAGAAc
gi|15 : ATCTACATAAGCACTTG-TTAAGA-TTATTAGG---------T-----G-TAA----AAAA---A-AAAA--------GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAT-ACCGTCGGCAAAAAGGTT---ATTCAGCCAATCAACCATTCATTCACC-GTGGAACAGGTCTTTTTTCTGTTCCACCCTGCACCTGAGGAAGGCCAAAAAGTAAGCGTTTTTACATGTGAAATGAACACGAACTCTGGCACAACCTTTGAAATTCAGGATTATGTCCA-----AGTGTCGAAATT-GGTTGGTAGTT
gi|16 : tg-TTCAGACTTATTAGGAATTTAGAAT-----GCTTGGTTTAAAA---A-AAAA--------
gi|17 : ttttatacatcaaatatttaaataagcacttgataataaagttttaatttttttttatcccaacgaccctgtattttttttgacaaaatcacaacttaaatggttgaaattttacaaacaaaataaaatagaatgctactttcaccactttcatattcattcagaaaacttatttgttgtataagagtagttgttgtgatgaataaaattaggaTATCTACATAAGCACTTG-
gi|17 : tttctatacagaaa-TTCAGACTTATTAGGAAATTAGAAT-----GCTAGGTTTAAAA---A-Aaaaataaagttttaaaaaagtttctacccgccgaccctgtttttttatggacaaaatcatacttacatggttgaatttttacaaacaaaaaataatagaatgcttctttcaccactttcatattcattcagaaaacttatttgtggtattagagtagttgttgtgatgaataaaattaggattcagacttattaggaaattagaatgctaggtttaaaaaa
gi|19 : tttctatacagaaatatctacataagcacttgaaaataaagttttaaaaaagtttctacccgccgaccctgtttttttatggacaaaatcatacttacatggttgaatttttacaaacaaaaaataatagaatgcttctttcaccactttcatattcattcagaaaacttatttgtggtattagagtagttgttgtgatgaataaaattaggaTGTCTACATAAGCACTTG-ATAA----TATT--GAAGTT
gi|2 : ttttatacagcaaaTTATCTACATAAGCACTTG-TTAAGACTTATTAGGAAGTTAGAAT-----GCTAGGTGTAAAA---A-AAAA--------GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAT-ACTGCCAGCAAAAAGGTT---ATTCAGCCAATCAACTATTCATTCACC-GTGGAACAGATCTTTTTTCTGTTCCACCCTGCACCTGAAGAAGGCCAAAAAGGAAGCGTTTTTACATGTGAAATGAACACAAACTCTGGCACAAACTTTGAAATTCAGGATTATGTCCA-----AGTGTCAAAATTTGGTTGGTAGTTTTGAAATATTTTCACAGATATATTAAATAT-ATAAAATGAAATTCCTTTTATATATTTAATAATACTTTTTTTAGCAGATTCTGTTGAATACCCAATCTAACCTATTGCAATATGGTG--CACATGGTGCAGAACAAATG-AGAATAT-ATT-------GAAAGTGGAAAGGAAAACATTCAAACTACAAAAGCAGAC----AAACTACAAAAGTATACAATAATTATGTT-GTCACCAAATGCTTTTG-AAAAAGGTGTAATTACTTTGCATGCAAAATTGAGTAACTGCGAGAAAAAATGAAG-AAAAAAATAACCAAAAAACACCGACCCTTTGATTTTGCATtaataaaagtttctacccactgaccctgttttttttgacaaaatcacacttactttacaaacaaaataaaatagaatgcttctttcacaacctccatatattcattcagaaaacttgtttgtggtattagagtagttattgtgatgaataaaattag
gi|20 : ATGGTGTACACAAGGTGCAG--C---TGTATATTATTATTTTAAATAAAAAGTGCAAGGGA------T--GACTACAAAGGCAGACTATTAAACTACAAAAGTATGCAA----TGTGTTAGACACCAAGTG----TG-CCAAAAGCGT-----CTTTGCATGTAGCA--GACTA----------AAAATGAAA-AAAA
gi|22 : agTATCTACATAAGCACTTGATTA
gi|3 : tttctatacagcaaaTTATCTACATAAGCACTTG-TTAATACTTATTAGGAAGTTAGAAT-----GCTAGGTGTAAAA---A-AAAAA-------GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAT-ACCGCCGGCAAAAAGGTT---ATTCAGCCAATCAACTATTCATTCACT-GTGGAACGGGTCTTTTTTCTGTTCCACCCTGCACCTGAGGAAGGCCAAAAAGGAAGCGTTTTAACATGTGAAACGACCACAAACTCTGGCACAAACTTTGAAATTCAGGATTATGTCCA-----AGTGTCAAAATT-GGTTGGTAGTTTTGAAATATTTTCACAGATATATTAAATAT-ATAAAATTAAATTCCTTTTATATATTTAATAATACTTTT-TTAACAGATTCTGTTGAATACCCAATCTAACCTATTGCAATATGGTG--CACATGGTGCAGAACAAATG-AGAATAT-ATT-------GAAAGTGGAAAGGAAAACATTCAAACTACAAAAGCAGAC----AAACTACAAAAGTATACAATAATTATGTT-GTAACCAAATGCTTTTG-AAAAAGGTGTCATTACTTCGCATTCAGAATTGAGTAACTGCGAGAGAAAATGAAG-AAAAAAATAACCAAAAAACACCGACCCTTTGATTTTGCATtaaagtttaaaaaaaggtttctatccagcaaccctgt
gi|4 : TTATCTACATAAGCACTTG-TTAAGACTTATTAGGAAGTTAGAAT-----GCTAGGTGTAAAA---A-AAAAAAA-----GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAT-ACCACCGGCAAAAAGGTT---ATTCAGCCAATCAACTGTTCATTCACC-TTGGAACAGGTCTTTTTTCTGTTCCACCCTGCACCTGAGAAAGGCCAAAAAGGAAGAGTTTTTACATGTGAAATGAACACAAACTCTGGCACAAACTTTGAAATTCAGGATTATGTCCA-----AGTGTCAAAATT-GGTTGGTAGTTTTGAAATATTTTCACAGATATAATAAATAT-ATAAAATGAAATTCCTTTTATATATTTAATA---TTTTTTTTAACAGATTCTGTTGAATACCCAATCTAACCTATTGCAATATGGTG--CACATGGTGCAGAACAAATG-AGAATAT-ATT-------GAAAGTGGAAAGGAAAACATTCAAACTACAAAAGCAGAC----AAACTACAAAAGTATACAATAATTATGTT-GTCACCAAATGCTTTTG-AAAAAGGTGTAATTACTTCGCATGCAAAATTGAGTAACTGCGAGAGAAAATGAAGAAAAAAAATAACC-AAAATCACCGACCCTTTGATTTTGCA
gi|5 : tCTTG-TTAAGACTTATTAGGAAGTTAGAAT-----GCTAGGTGTAAAA---A-AAA---------GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAT-ACCGCCGGCAAAAAGGTT---ATTCAGCCAATCAACTATTCATTCACC-TTGGAACAGGTCTTTT-TCTGTTCCACCCTGCACCTGAGGAAGGCCAAAAAGGAAGCGTTTTTACATGTGCAATGAACACAAACACTGGCACAAACTTTGAAATTCAGGATTATGTCCA-----AGTGTCAAAATT-GGTAGGTAGTTTTGAAATATTTTCACAGATATATTAAATAT-ACAAAATGAAATTCCTTTTATATATTTAATAATACTGTTTTTAACATATTCTGTTGAATACCCAATCTAACCTATTGCAATATGGTG--CACATGGTGCAGAACAAATG-AGAATAT-ATT-------G-AAGTGGAAAGGAAAACATTCAAACTACAAAAGCAGAC----ACACTACAAAAGTATACAATAATTATGTT-GCCACCAAATGCTTTTGAAAAAAGGTGTAATTACTTTGCATGCAAAATTGAGTAACTGCGAGAGAAAATGAAG-AAAAAAATAACAAAAAAACACCGACCCTTCGATTTTGCA
gi|6 : TTATCTACATAAGCACTTG-TTAAGACTTATTAGGAAGTTAGAAT-----GCTAGGTGTAAAA---A-AAAAAAAAAAAAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAT-ACAGCTGCCAAAATGGTT---GTTCAGCCAATCAACCATTCATTCACC-ATGGAACAGGTCTTTTTTCTGTTCCACCCTGCACCTGAGAAAGGCCAAAAAGGAAGTGTTTTTACAAGTGAAATGAACACAAACACTGGCACAAACTTTGAAATTCAGGATTATGTCCATTATTAGTGTCGAAATT-GGTTGGTAGTTTTGAAATGTTTTCACAGATATATTAAATAT-ATAAAATGAAATTCCTTTTATATATTTAATAATACCTTTTTTAACAGATTCTGTTGAATACCCAATCTAACCTATTGCAATATGGTG--CACATGTTGCAGAACAAATG-AGAATAT-ACT-------GAAAGTGGAAAGGAAAACATTCAAACTACAAAAGCAGAC----AAACTACAAAAGTATGCAA----TATGTT-GTCACCAAATGCTTTTG-AAAAAGGTGTTATATTTTTGCATGCAAAATTGAGTACATGCGAG
gi|7 : tTTATCTACATAAGCACTTG-TTAAGACTTATTAGGAAGTAAGAAT-----GCTAGGTGTAAAA---A-NNNN--------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAT-ACCGCCGGCAAAAAGGTT---TTTCAGCCAATCAACTATTCATTCACCTGAGGAAg
gi|7 : CACCTGAGGAAGGCCAAAAAGGAAGCGTTTTTACATGTGAAATGAACACAAACTCTGGCACAAACTTTGAAATTCAGGATTATGTCCA-----AGTGTCAAAATT-GGTTGGTAGTTTTGAAATATTTTCACAGATATAATAAATAT-ATAAAATGAAATTCCTTTTATAAATTTAATAATACTTTTTTTAACAGATTCTGTTGAATACCCAATCTAACCTATTGCAGTATGGTG--CACATGGTACAGAACAAATG-AGAATAT-ATT-------GAAAGTGGAAAGGAAAACATTCAAACTACAAAAGCAGAC----AAACTACAAAAGTATACAATAATTATGTT-GTCACCAAATGCTTTTG-AAAAAGGTGTAATTACTTTGCATGCAAAATTGAGTAACTGCGAGAggccaaaaaggaagcgtttttacatgtgaaatgaacacaaactctggcacaaactttgaaattcaggattatgtccaagtgtcaaaattggttggtagttttgaaatattttcacagatataataaatatataaaatgaaattccttttataaatttaataatactttttttaacagattctgttgaatacccaatctaacctattgcagtatggtgcacatggtacagaacaaatgagaatatattgaaagtggaaaggaaaacattcaaactacaaaagcagacaaactacaaaagtatacaataattatgttgtcaccaaatgcttttgaaaaaggtgtaattactttgcatgcaaaattgagtaactgcgagaa
gi|8 : ttatctacataagcacttgttaagacttattaggaagtaagaatgctaggtgtaaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacataccgccggcaaaaaggtttttcagccaatcaactattcattG-TTCAGACATATTAGGAAGTTAGAAT-----GCTAGGTTTAAAA---A-AAAA--------GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAT-ACCGCTGGCAAAAAAGTT---ATTCAGCCAATCAACCATTCATTCACA-GTGGAACAGGTCTTTTTTCTGTTCCACCCTGCACGTGAGGAAGGTCAAAAAGGAAGCGTTTTTACATGTGAAATGAACACAAACTC------------TGAAATTCAGGATTATGTCCA-----AGTGTCAATATT-GGTTGGTAGTTTTGGAATATTTTCACAGATATATTAAATAT-ATAAAATa
gi|9 : ttttctacacagcaaatatctgcataaaaagcacttgataataaagtttaaaaaagtttctacccagagaccctgttttttttggacaaaatcacacttacgtggttgaagttttacaaacaaaataaaatagaatgctactttcaccacgttcagactcattcagaaaatttatttgtggtattagagtagttgttgtgatgaataaaattaaTTATCTACATAAGCACTTG-TTAAGACTTATTAGGAAGTTAGAAT-----GCTAGGTGTAAAA---A-AAAA--------GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACACAAACTCTGGCACAGACTTTGAAATTCAG
gi|9 : tAACACAAACTCTGGCACAGACTTTGAAATTCAGGATTATGTCCA-----AGTGTCAAAATT-GGTTGATACTTTTGAAATATTTTCACAGATATATTAAATAT-ATAAAATTAAATTCCTTTTATATATTTATTAATACTTTT-TTAACAGATTCTGTTGAATACCCAATCTAACCTATTGCAATATGGTG--CACATGGTGCAGAGCAAATG-AGAATAT-ATT-------GAAAGTGGAAAGGAAAACATTCAAACTACAAAAGCAGAC----AAACTACAAAAGTATACAATAATTATGTT-GCCACCAAATGCTTTTG-AAAAAGGTGTCATTACTTTACATTCAAAATTGAGTAACTGCGAGAGAAAATGAAG-AAAAAAATAACCAAAAAACACCGACCCTTTTATTTTGCATgattatgtccaagtgtcaaaattggttgatacttttgaaatattttcacagatatattaaatatataaaattaaattccttttatatatttattaatacttttttaacagattctgttgaatacccaatctaacctattgcaatatggtgcacatggtgcagagcaaatgagaatatattgaaagtggaaaggaaaacattcaaactacaaaagcagacaaactacaaaagtatacaataattatgttgccaccaaatgcttttgaaaaaggtgtcattactttacattcaaaattgagtaactgcgagagaaaatgaagaaaaaaataaccaaaaaacaccgacccttttattttgcatc
blockSeqs : A ATAAA AAA . AAAAAAAA NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN A GAA T TTATT A T A T T T TA A T TTAAATA TATT T A A C T A T
blockSeqs : . GTAAA . . AAA NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN A CAA . . A . . T T T . T . . . T . . C T . T
blockSeqs : . . . . A NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN A GAA . . A . . T C T . . . . . T . . C T . T
blockSeqs : . . . . . NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN A GAA . . A . . T T T . . . . . T . . C G . G
blockSeqs : . . . . . NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN . . . . G . . G T T . . . . . T . . A G . G
blockSeqs : . . . . . NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN . . . . G . . G T T . . . . . T . . C T . G
blockSeqs : . . . . . NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN . . . . A . . T T T . . . . . T . . A G . G
blockSeqs : . . . . . NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN . . . . A . . G C T . . . . . T . . A G . T
blockSeqs : . . . . . NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN . . . . A . . G T . . . . . . T . . T G .
blockSeqs : . . . . . NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN . . . A . . G T . . . . . . T . . A G .
blockSeqs : . . . . . NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN . . . G . . G . . . . . . . . . . C T
blockSeqs : . . . . . NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN . . . A . . T . . . . . . . . . . . .
blockSeqs : . . . . . NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN . . . A . . . .
blockSeqs : . . . . . . A .
blockSeqs : . . . . .
blockSeqs : . . . .
blockSeqs : .
blockSeqs : .
blockSeqCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
originalCons : TTATCTACATAAGCACTTG-TTAAGACTTATTAGGAAGTTAGAAT-----GCTAGGTGTAAAA---A-AAAA--------GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAT-ACCGCCGGCAAAAAGGTT---ATTCAGCCAATCAACCATTCATTCACC-GTGGAACAGGTCTTTTTTCTGTTCCACCCTGCACCTGAGGAAGGCCAAAAAGGAAGCGTTTTTACATGTGAAATGAACACAAACTCTGGCACAAACTTTGAAATTCAGGATTATGTCCA-----AGTGTCGAAATT-GGTTGGTAGTTTTGAAATATTTTCACAGATATATTAAATAT-ATAAAATGAAATTCCTTTTATATATTTAATAATACTTTTTTTAACAGATTCTGTTGAATACCCAATCTAACCTATTGCAATATGGTG--CACATGGTGCAGAACAAATG-AGAATAT-ATT-------GAAAGTGGAAAGGAAAACATTCAAACTACAAAAGCAGAC----AAACTACAAAAGTATACAATAATTATGTT-GTCACCAAATGCTTTTG-AAAAAGGTGTCATTACTTCGCATGCAAAATTGAGTAACTGCGAGAGAAAATGAAG-AAAAAAATAACCAAAAAACACCGACCCTTTGATTTTGCAT
finalCons : TTATCTACATAAGCACTTG-TTAAGACTTATTAGGAAGTTAGAAT-----GCTAGGTGTAAAA---A-AAAA--------GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAT-ACCGCCGGCAAAAAGGTT---ATTCAGCCAATCAACCATTCATTCACC-GTGGAACAGGTCTTTTTTCTGTTCCACCCTGCACCTGAGGAAGGCCAAAAAGGAAGCGTTTTTACATGTGAAATGAACACAAACTCTGGCACAAACTTTGAAATTCAGGATTATGTCCA-----AGTGTCGAAATT-GGTTGGTAGTTTTGAAATATTTTCACAGATATATTAAATAT-ATAAAATGAAATTCCTTTTATATATTTAATAATACTTTTTTTAACAGATTCTGTTGAATACCCAATCTAACCTATTGCAATATGGTG--CACATGGTGCAGAACAAATG-AGAATAT-ATT-------GAAAGTGGAAAGGAAAACATTCAAACTACAAAAGCAGAC----AAACTACAAAAGTATACAATAATTATGTT-GTCACCAAATGCTTTTG-AAAAAGGTGTCATTACTTCGCATGCAAAATTGAGTAACTGCGAGAGAAAATGAAG-AAAAAAATAACCAAAAAACACCGACCCTTTGATTTTGCAT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TTTCTATACAGCAGATATATAGATAAGCACTTGATAATACAGTCAAAAAAGGTTTCTACCAACCGTCCCTGGTTGTTTTTTTTAACAAAATCACTCTTACATGGTTGAATTTTTACAAACAAAATAAAAATAGACTGCTACTTTCACCACTTTCATATTCATTCAGAAAACTTATTTGTGGTATTAGAGTAATTGTTGTGATTC
Unaligned ( gi|21 ): TTTCTATACAGCAGATATATACATAAGCACTTGATAATAAAGTTAAAAGAAAGTTTCTACCCACAGACCCTCTTTTTTTTTTTAGACAAAATCACACTTATATGGTTGAATTTTTACAA
Unaligned ( gi|23 ): AATGCTTCTTCATCACTTTCACATTCATTCAGAAAACTTATTTGTGGTATTAAAGTAGTTGTTGTGATG
Alignments
lowQualScore : 11111 11111111 4444444444444444444444444444444444444 1 222 1111111
lowQualScore : 2 11111 444 2 55555555 3333333333333333333333333333333333333 1 000 4 66666 1 2 2 1 2 6 33 5 3 0000000 6666 2 3 6 4 0 1 7 1
lowQualScore : . ..... ... . ........ ..................................... . ... . ..... . . . . . . .. . . ....... .... . . . . . . . .
lowQualScore : 1 88888 111 4 99999999 8888888888888888888888888888888888888 4 000 0 77777 7 7 9 5 0 1 99 7 1 0000000 5555 3 1 2 7 5 5 3 1
consensus : TTATCTACATAAGCACTTG-TTAAGACTTATTAGGAAGTTAGAAT-----GCTAGGTGTAAAA---A-AAAA--------GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAT-ACCGCCGGCAAAAAGGTT---ATTCAGCCAATCAACCATTCATTCACC-GTGGAACAGGTCTTTTTTCTGTTCCACCCTGCACCTGAGGAAGGCCAAAAAGGAAGCGTTTTTACATGTGAAATGAACACAAACTCTGGCACAAACTTTGAAATTCAGGATTATGTCCA-----AGTGTCGAAATT-GGTTGGTAGTTTTGAAATATTTTCACAGATATATTAAATAT-ATAAAATGAAATTCCTTTTATATATTTAATAATACTTTTTTTAACAGATTCTGTTGAATACCCAATCTAACCTATTGCAATATGGTG--CACATGGTGCAGAACAAATG-AGAATAT-ATT-------GAAAGTGGAAAGGAAAACATTCAAACTACAAAAGCAGAC----AAACTACAAAAGTATACAATAATTATGTT-GTCACCAAATGCTTTTG-AAAAAGGTGTCATTACTTCGCATGCAAAATTGAGTAACTGCGAGAGAAAATGAAG-AAAAAAATAACCAAAAAACACCGACCCTTTGATTTTGCAT
Reference ( family-156 ) : TTATCTACATAAGCACTTG-TTAAGACTTATTAGGAAGTTAGAAT-----GCTAGGTGTAAAA---A-AAAA--------GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAT-ACCGCCGGCAAAAAGGTT---ATTCAGCCAATCAACCATTCATTCACC-GTGGAACAGGTCTTTTTTCTGTTCCACCCTGCACCTGAGGAAGGCCAAAAAGGAAGCGTTTTTACATGTGAAATGAACACAAACTCTGGCACAAACTTTGAAATTCAGGATTATGTCCA-----AGTGTCGAAATT-GGTTGGTAGTTTTGAAATATTTTCACAGATATATTAAATAT-ATAAAATGAAATTCCTTTTATATATTTAATAATACTTTTTTTAACAGATTCTGTTGAATACCCAATCTAACCTATTGCAATATGGTG--CACATGGTGCAGAACAAATG-AGAATAT-ATT-------GAAAGTGGAAAGGAAAACATTCAAACTACAAAAGCAGAC----AAACTACAAAAGTATACAATAATTATGTT-GTCACCAAATGCTTTTG-AAAAAGGTGTCATTACTTCGCATGCAAAATTGAGTAACTGCGAGAGAAAATGAAG-AAAAAAATAACCAAAAAACACCGACCCTTTGATTTTGCAT
gi|1 : -TTCAGACTTATTAGGAAGTTAGAAT-----GCTAGGTGTAAAT---ATAAAA--------GGTTTCCCTCATTCTTTCCGAAAAAGTTCACATG-----AACAT-ACCGCCAGCAAAAAGGTT---ATTCAGCCAATCCACCATTCATTCACC-GTGGAACAGGTCTTTTTTCTGTTCCACCCTGCACCTGAGGAAGGCCAAAAAGGAAGTGTTTTTACATGTGAAATGAACACAAAATCTGGTGCAAACTT----------------------------TGTTGAAATT-AGTTGGTAGTTTTGAAATATTTTCGCAGATATATTAAATAT-ATAAAATGAAATTCCTTTTATATATTTAATAATACCTTTTTTAACAGATTCTGTCGAATACCCAATCTAACCTATTGCAATATGGTG--CACATAGTGCAGAACAAATG-AGAATAT-ATT-------GAAAGTGGAAAGGAAAACATTCAAACTACAAAAGCAGAC----AAACTACTAAAGTATACAA----TATGTT-GTCACCAAATGCTTTTGAAAAAAGGTGTAATTACTTTGCATGCAAATTTGAGTACATGCTAGGGAAAATAAAGAAAAAAAATGACCAAAAAACACTGACCCTTTGATTTTGCAT
gi|10 : ttgacaaaatcacactatgtggttgaatttttacaaacaataaaatagaatgctactttcaccactcattcagaaaacttatttgtggtattagagtagttgttgtcatgaataaaattaggaTTATCTACATAAGCACTTG-TTAAAACTTATTAGGAAGTTAGAATATAAAGTTAGGTGTAAAA---A-AAAA--------AG
gi|10 : CACAAACTTTGAAATTCAGGATTATGTCCA-----AGTGTCAAAATT-GGTTGATAGTTTTGAAATATTTTCACAGATATATTAAATATAAAAAAATTAAATTCCTTTTATATATTTAATAATAC-TTTTTTAACAGATTCTGTTGAATACCCAATCTAACCTATTGCAAGATGGTG--CACATGGTGCAGAACAAATG-AGAATAT-ATT-------GAAAGTGGAAAGGAAAACATTCAAACTACAAAAGCAGAC----AAACTACAAAAGTATACAATAATTATGTT-GTCACCAAATGCTTTTG-AAAAAGGTGTCATTACTTCGCATTCAAAATTGAGTAACTGCGAGAGAAAATGAAG-AAAAAAATAACCAAAAAACACCGACCCTTTTATTTTGCATgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacacaaactttgaaattcaggattatgtccaagtgtcaaaattggttgatagttttgaaatattttcacagatatattaaatataaaaaaattaaattccttttatatatttaataatacttttttaacagattctgttgaatacccaatctaacctattgcaagatggtgcacatggtgcagaacaaatgagaatatattgaaagtggaaaggaaaacattcaaactacaaaagcagacaaactacaaaagtatacaataattatgttgtcaccaaatgcttttgaaaaaggtgtcattacttcgcattcaaaattgagtaactgcgagagaaaatgaagaaaaaaataaccaaaaaacaccgacccttttattttgcatct
gi|11 : ttatctacataagcacttgttaaaacttattaggaagttagaatataaagttaggtgtaaaaaaaaaaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaTTATCTACATAAGCACTTG-TTAAAACTTATTAGGAAGTTAGAATGTAAAGTTAGGTGTAAAA---A-AAAA--------GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACACAAACTCTGGCACAAACTTTGAAATTCAGct
gi|11 : tAACACAAACTCTGGCACAAACTTTGAAATTCAGGATTATGTCCA-----AGTGTCAAAATT-GGTTGATAGTTTTGAAATATTTTCACAGATATATTAAATAT-ATAAAATTAAATTCCTTTTATATATTTAATAATACTTTT-TTAACAGATTCTGTTGAATACCCAATCTAACCTATTGCAAGATGGTG--CACATGGTGCAGAACAAATG-AGAATAT-ATT-------GAAAGTGGAAAGGAAAACATTCAAACTACAAAAGCAGAC----AAACTACAAAAGTATACAATAATTATGTT-GTCACCAAATGCTTTTG-AAAAAGGTGTCATTACTTCGCATTCAAAATTGAGTAACTGCGAGAGAAAATGAAG-AAAAAAATAACCAAAAAACACCgattatgtccaagtgtcaaaattggttgatagttttgaaatattttcacagatatattaaatatataaaattaaattccttttatatatttaataatacttttttaacagattctgttgaatacccaatctaacctattgcaagatggtgcacatggtgcagaacaaatgagaatatattgaaagtggaaaggaaaacattcaaactacaaaagcagacaaactacaaaagtatacaataattatgttgtcaccaaatgcttttgaaaaaggtgtcattacttcgcattcaaaattgagtaactgcgagagaaaatgaagaaaaaaataaccaaaaaacacc
gi|12 : tttatctacataagcacttgttaaaacttattaggaagttagaatgtaaagttaggtgtaaaaaaaaaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTATCTACATAAGCACTTG-TTAAGACTTATTAGGAAGTTAGAAT-----GCTAGGTGTAAAA---A-AAAA--------GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACACAAACTCTGGCACAAACTTTCAAATTCAG
gi|12 : AACACAAACTCTGGCACAAACTTTCAAATTCAGGATTATGTCCA-----AGTGTCAAAATT-GGTTGATACTTTTGAAATATTTTCACAGATATATTAAATAT-ATAAAATTAAATTCCTTTTATATATTTAATAGTAC-TTTTTTAACAGATTCTGTTGAATACCCAATCTAACCTATTGCAATATGGTG--CACATGGTGCAGAACAAATG-AGAATAT-ATT-------GAAAGTGGAAAGGAAAACATT-----------------C----AAACTACAAAAGTATACAATAATTATGTT-GTCACCAAATGCTTTTG-AAAAAGGTGTCATTACTTCGCATTCAAAATTGAATAACTGCAAGAGAAAATGAAA-AAAAAAATAACCAAAAAACACTGACCCTTTTATTTTGCATgattatgtccaagtgtcaaaattggttgatacttttgaaatattttcacagatatattaaatatataaaattaaattccttttatatatttaatagtacttttttaacagattctgttgaatacccaatctaacctattgcaatatggtgcacatggtgcagaacaaatgagaatatattgaaagtggaaaggaaaacattcaaactacaaaagtatacaataattatgttgtcaccaaatgcttttgaaaaaggtgtcattacttcgcattcaaaattgaataactgcaagagaaaatgaaaaaaaaaataaccaaaaaacactgacccttttattttgcatct
gi|13 : ttatctacataagcacttgttaagacttattaggaagttagaatgctaggtgtaaaaaaaaaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTATCTACATAAGCACTTG-TTAATACTTATTATGAAGTTAGAAT-----GCTAGGTGTAAAA---A-AAAA--------GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACACAAACTCTGGCACAAACTTTGAAATTCAGct
gi|13 : tAACACAAACTCTGGCACAAACTTTGAAATTCAGGATTATGTCCA-----AGTGTCAAAATT-GGTTGATACTTTTGAAATATTTTCACAGATATATTAAATAT-ATAAAATTAAATTCCTTTTATATATTTAATAATACTTTT-TTAACAGATTCTGTTGAATACCCAATCTAACCTATTGCAATATGGTG--CACATGGTGCAGAACAAATG-AGAATTT-ATT-------GAAAGTGGAAAGGAAAACATTCAAACTACAAAAGCAGAC----AAACTACAAAAGTATACAATAATTATGTT-GTCACCAAAT---------------TGTCATT----------CAAAATTGAGTAACTGCGAGAGAAAATGAAG-AAAAAAATAACCAAAAAACACCGACCCTTTTATTTTGCATgattatgtccaagtgtcaaaattggttgatacttttgaaatattttcacagatatattaaatatataaaattaaattccttttatatatttaataatacttttttaacagattctgttgaatacccaatctaacctattgcaatatggtgcacatggtgcagaacaaatgagaatttattgaaagtggaaaggaaaacattcaaactacaaaagcagacaaactacaaaagtatacaataattatgttgtcaccaaattgtcattcaaaattgagtaactgcgagagaaaatgaagaaaaaaataaccaaaaaacaccgacccttttattttgcatc
gi|14 : tttatctacataagcacttgttaatacttattatgaagttagaatgctaggtgtaaaaaaaaaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTATTAGAAAGTTAGAAT-----GCTAGGTGTAAAAAAAA-AAAA--------GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAT-ACCGCCAGCAAAGAGGTT---ATTCAGCCAATCAACCATTCATTCACC-ATGGAACAGGTCTTTTTTCTGTTCCACCCTTCACCTGAGGAAAGCCAAAAGGGAAGCGTTTTAACATGTGAAATGAACACAAACTCAGGCACAAACTTTGAAATTCAGGATTATGTCCA-----AGTGTCGAAATT-GGTTGGTAGTTTTGAAATATTTTCACAGATATATTAAATAC-ATAAAATGAAATTCCTTTTATATCTTTAATAAAACCTTTTTTAACAGATTCTGTTGAATACCCAATCT------TT----TTTTGAG--TACAT-GTG-AGAAAAAATGAAGAAc
gi|15 : ATCTACATAAGCACTTG-TTAAGA-TTATTAGG---------T-----G-TAA----AAAA---A-AAAA--------GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAT-ACCGTCGGCAAAAAGGTT---ATTCAGCCAATCAACCATTCATTCACC-GTGGAACAGGTCTTTTTTCTGTTCCACCCTGCACCTGAGGAAGGCCAAAAAGTAAGCGTTTTTACATGTGAAATGAACACGAACTCTGGCACAACCTTTGAAATTCAGGATTATGTCCA-----AGTGTCGAAATT-GGTTGGTAGTT
gi|16 : tg-TTCAGACTTATTAGGAATTTAGAAT-----GCTTGGTTTAAAA---A-AAAA--------
gi|17 : ttttatacatcaaatatttaaataagcacttgataataaagttttaatttttttttatcccaacgaccctgtattttttttgacaaaatcacaacttaaatggttgaaattttacaaacaaaataaaatagaatgctactttcaccactttcatattcattcagaaaacttatttgttgtataagagtagttgttgtgatgaataaaattaggaTATCTACATAAGCACTTG-
gi|17 : tttctatacagaaa-TTCAGACTTATTAGGAAATTAGAAT-----GCTAGGTTTAAAA---A-Aaaaataaagttttaaaaaagtttctacccgccgaccctgtttttttatggacaaaatcatacttacatggttgaatttttacaaacaaaaaataatagaatgcttctttcaccactttcatattcattcagaaaacttatttgtggtattagagtagttgttgtgatgaataaaattaggattcagacttattaggaaattagaatgctaggtttaaaaaa
gi|19 : tttctatacagaaatatctacataagcacttgaaaataaagttttaaaaaagtttctacccgccgaccctgtttttttatggacaaaatcatacttacatggttgaatttttacaaacaaaaaataatagaatgcttctttcaccactttcatattcattcagaaaacttatttgtggtattagagtagttgttgtgatgaataaaattaggaTGTCTACATAAGCACTTG-ATAA----TATT--GAAGTT
gi|2 : ttttatacagcaaaTTATCTACATAAGCACTTG-TTAAGACTTATTAGGAAGTTAGAAT-----GCTAGGTGTAAAA---A-AAAA--------GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAT-ACTGCCAGCAAAAAGGTT---ATTCAGCCAATCAACTATTCATTCACC-GTGGAACAGATCTTTTTTCTGTTCCACCCTGCACCTGAAGAAGGCCAAAAAGGAAGCGTTTTTACATGTGAAATGAACACAAACTCTGGCACAAACTTTGAAATTCAGGATTATGTCCA-----AGTGTCAAAATTTGGTTGGTAGTTTTGAAATATTTTCACAGATATATTAAATAT-ATAAAATGAAATTCCTTTTATATATTTAATAATACTTTTTTTAGCAGATTCTGTTGAATACCCAATCTAACCTATTGCAATATGGTG--CACATGGTGCAGAACAAATG-AGAATAT-ATT-------GAAAGTGGAAAGGAAAACATTCAAACTACAAAAGCAGAC----AAACTACAAAAGTATACAATAATTATGTT-GTCACCAAATGCTTTTG-AAAAAGGTGTAATTACTTTGCATGCAAAATTGAGTAACTGCGAGAAAAAATGAAG-AAAAAAATAACCAAAAAACACCGACCCTTTGATTTTGCATtaataaaagtttctacccactgaccctgttttttttgacaaaatcacacttactttacaaacaaaataaaatagaatgcttctttcacaacctccatatattcattcagaaaacttgtttgtggtattagagtagttattgtgatgaataaaattag
gi|20 : ATGGTGTACACAAGGTGCAG--C---TGTATATTATTATTTTAAATAAAAAGTGCAAGGGA------T--GACTACAAAGGCAGACTATTAAACTACAAAAGTATGCAA----TGTGTTAGACACCAAGTG----TG-CCAAAAGCGT-----CTTTGCATGTAGCA--GACTA----------AAAATGAAA-AAAA
gi|22 : agTATCTACATAAGCACTTGATTA
gi|3 : tttctatacagcaaaTTATCTACATAAGCACTTG-TTAATACTTATTAGGAAGTTAGAAT-----GCTAGGTGTAAAA---A-AAAAA-------GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAT-ACCGCCGGCAAAAAGGTT---ATTCAGCCAATCAACTATTCATTCACT-GTGGAACGGGTCTTTTTTCTGTTCCACCCTGCACCTGAGGAAGGCCAAAAAGGAAGCGTTTTAACATGTGAAACGACCACAAACTCTGGCACAAACTTTGAAATTCAGGATTATGTCCA-----AGTGTCAAAATT-GGTTGGTAGTTTTGAAATATTTTCACAGATATATTAAATAT-ATAAAATTAAATTCCTTTTATATATTTAATAATACTTTT-TTAACAGATTCTGTTGAATACCCAATCTAACCTATTGCAATATGGTG--CACATGGTGCAGAACAAATG-AGAATAT-ATT-------GAAAGTGGAAAGGAAAACATTCAAACTACAAAAGCAGAC----AAACTACAAAAGTATACAATAATTATGTT-GTAACCAAATGCTTTTG-AAAAAGGTGTCATTACTTCGCATTCAGAATTGAGTAACTGCGAGAGAAAATGAAG-AAAAAAATAACCAAAAAACACCGACCCTTTGATTTTGCATtaaagtttaaaaaaaggtttctatccagcaaccctgt
gi|4 : TTATCTACATAAGCACTTG-TTAAGACTTATTAGGAAGTTAGAAT-----GCTAGGTGTAAAA---A-AAAAAAA-----GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAT-ACCACCGGCAAAAAGGTT---ATTCAGCCAATCAACTGTTCATTCACC-TTGGAACAGGTCTTTTTTCTGTTCCACCCTGCACCTGAGAAAGGCCAAAAAGGAAGAGTTTTTACATGTGAAATGAACACAAACTCTGGCACAAACTTTGAAATTCAGGATTATGTCCA-----AGTGTCAAAATT-GGTTGGTAGTTTTGAAATATTTTCACAGATATAATAAATAT-ATAAAATGAAATTCCTTTTATATATTTAATA---TTTTTTTTAACAGATTCTGTTGAATACCCAATCTAACCTATTGCAATATGGTG--CACATGGTGCAGAACAAATG-AGAATAT-ATT-------GAAAGTGGAAAGGAAAACATTCAAACTACAAAAGCAGAC----AAACTACAAAAGTATACAATAATTATGTT-GTCACCAAATGCTTTTG-AAAAAGGTGTAATTACTTCGCATGCAAAATTGAGTAACTGCGAGAGAAAATGAAGAAAAAAAATAACC-AAAATCACCGACCCTTTGATTTTGCA
gi|5 : tCTTG-TTAAGACTTATTAGGAAGTTAGAAT-----GCTAGGTGTAAAA---A-AAA---------GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAT-ACCGCCGGCAAAAAGGTT---ATTCAGCCAATCAACTATTCATTCACC-TTGGAACAGGTCTTTT-TCTGTTCCACCCTGCACCTGAGGAAGGCCAAAAAGGAAGCGTTTTTACATGTGCAATGAACACAAACACTGGCACAAACTTTGAAATTCAGGATTATGTCCA-----AGTGTCAAAATT-GGTAGGTAGTTTTGAAATATTTTCACAGATATATTAAATAT-ACAAAATGAAATTCCTTTTATATATTTAATAATACTGTTTTTAACATATTCTGTTGAATACCCAATCTAACCTATTGCAATATGGTG--CACATGGTGCAGAACAAATG-AGAATAT-ATT-------G-AAGTGGAAAGGAAAACATTCAAACTACAAAAGCAGAC----ACACTACAAAAGTATACAATAATTATGTT-GCCACCAAATGCTTTTGAAAAAAGGTGTAATTACTTTGCATGCAAAATTGAGTAACTGCGAGAGAAAATGAAG-AAAAAAATAACAAAAAAACACCGACCCTTCGATTTTGCA
gi|6 : TTATCTACATAAGCACTTG-TTAAGACTTATTAGGAAGTTAGAAT-----GCTAGGTGTAAAA---A-AAAAAAAAAAAAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAT-ACAGCTGCCAAAATGGTT---GTTCAGCCAATCAACCATTCATTCACC-ATGGAACAGGTCTTTTTTCTGTTCCACCCTGCACCTGAGAAAGGCCAAAAAGGAAGTGTTTTTACAAGTGAAATGAACACAAACACTGGCACAAACTTTGAAATTCAGGATTATGTCCATTATTAGTGTCGAAATT-GGTTGGTAGTTTTGAAATGTTTTCACAGATATATTAAATAT-ATAAAATGAAATTCCTTTTATATATTTAATAATACCTTTTTTAACAGATTCTGTTGAATACCCAATCTAACCTATTGCAATATGGTG--CACATGTTGCAGAACAAATG-AGAATAT-ACT-------GAAAGTGGAAAGGAAAACATTCAAACTACAAAAGCAGAC----AAACTACAAAAGTATGCAA----TATGTT-GTCACCAAATGCTTTTG-AAAAAGGTGTTATATTTTTGCATGCAAAATTGAGTACATGCGAG
gi|7 : tTTATCTACATAAGCACTTG-TTAAGACTTATTAGGAAGTAAGAAT-----GCTAGGTGTAAAA---A-NNNN--------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAT-ACCGCCGGCAAAAAGGTT---TTTCAGCCAATCAACTATTCATTCACCTGAGGAAg
gi|7 : CACCTGAGGAAGGCCAAAAAGGAAGCGTTTTTACATGTGAAATGAACACAAACTCTGGCACAAACTTTGAAATTCAGGATTATGTCCA-----AGTGTCAAAATT-GGTTGGTAGTTTTGAAATATTTTCACAGATATAATAAATAT-ATAAAATGAAATTCCTTTTATAAATTTAATAATACTTTTTTTAACAGATTCTGTTGAATACCCAATCTAACCTATTGCAGTATGGTG--CACATGGTACAGAACAAATG-AGAATAT-ATT-------GAAAGTGGAAAGGAAAACATTCAAACTACAAAAGCAGAC----AAACTACAAAAGTATACAATAATTATGTT-GTCACCAAATGCTTTTG-AAAAAGGTGTAATTACTTTGCATGCAAAATTGAGTAACTGCGAGAggccaaaaaggaagcgtttttacatgtgaaatgaacacaaactctggcacaaactttgaaattcaggattatgtccaagtgtcaaaattggttggtagttttgaaatattttcacagatataataaatatataaaatgaaattccttttataaatttaataatactttttttaacagattctgttgaatacccaatctaacctattgcagtatggtgcacatggtacagaacaaatgagaatatattgaaagtggaaaggaaaacattcaaactacaaaagcagacaaactacaaaagtatacaataattatgttgtcaccaaatgcttttgaaaaaggtgtaattactttgcatgcaaaattgagtaactgcgagaa
gi|8 : ttatctacataagcacttgttaagacttattaggaagtaagaatgctaggtgtaaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacataccgccggcaaaaaggtttttcagccaatcaactattcattG-TTCAGACATATTAGGAAGTTAGAAT-----GCTAGGTTTAAAA---A-AAAA--------GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAT-ACCGCTGGCAAAAAAGTT---ATTCAGCCAATCAACCATTCATTCACA-GTGGAACAGGTCTTTTTTCTGTTCCACCCTGCACGTGAGGAAGGTCAAAAAGGAAGCGTTTTTACATGTGAAATGAACACAAACTC------------TGAAATTCAGGATTATGTCCA-----AGTGTCAATATT-GGTTGGTAGTTTTGGAATATTTTCACAGATATATTAAATAT-ATAAAATa
gi|9 : ttttctacacagcaaatatctgcataaaaagcacttgataataaagtttaaaaaagtttctacccagagaccctgttttttttggacaaaatcacacttacgtggttgaagttttacaaacaaaataaaatagaatgctactttcaccacgttcagactcattcagaaaatttatttgtggtattagagtagttgttgtgatgaataaaattaaTTATCTACATAAGCACTTG-TTAAGACTTATTAGGAAGTTAGAAT-----GCTAGGTGTAAAA---A-AAAA--------GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACACAAACTCTGGCACAGACTTTGAAATTCAG
gi|9 : tAACACAAACTCTGGCACAGACTTTGAAATTCAGGATTATGTCCA-----AGTGTCAAAATT-GGTTGATACTTTTGAAATATTTTCACAGATATATTAAATAT-ATAAAATTAAATTCCTTTTATATATTTATTAATACTTTT-TTAACAGATTCTGTTGAATACCCAATCTAACCTATTGCAATATGGTG--CACATGGTGCAGAGCAAATG-AGAATAT-ATT-------GAAAGTGGAAAGGAAAACATTCAAACTACAAAAGCAGAC----AAACTACAAAAGTATACAATAATTATGTT-GCCACCAAATGCTTTTG-AAAAAGGTGTCATTACTTTACATTCAAAATTGAGTAACTGCGAGAGAAAATGAAG-AAAAAAATAACCAAAAAACACCGACCCTTTTATTTTGCATgattatgtccaagtgtcaaaattggttgatacttttgaaatattttcacagatatattaaatatataaaattaaattccttttatatatttattaatacttttttaacagattctgttgaatacccaatctaacctattgcaatatggtgcacatggtgcagagcaaatgagaatatattgaaagtggaaaggaaaacattcaaactacaaaagcagacaaactacaaaagtatacaataattatgttgccaccaaatgcttttgaaaaaggtgtcattactttacattcaaaattgagtaactgcgagagaaaatgaagaaaaaaataaccaaaaaacaccgacccttttattttgcatc
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TTTCTATACAGCAGATATATAGATAAGCACTTGATAATACAGTCAAAAAAGGTTTCTACCAACCGTCCCTGGTTGTTTTTTTTAACAAAATCACTCTTACATGGTTGAATTTTTACAAACAAAATAAAAATAGACTGCTACTTTCACCACTTTCATATTCATTCAGAAAACTTATTTGTGGTATTAGAGTAATTGTTGTGATTC
Unaligned ( gi|21 ): TTTCTATACAGCAGATATATACATAAGCACTTGATAATAAAGTTAAAAGAAAGTTTCTACCCACAGACCCTCTTTTTTTTTTTAGACAAAATCACACTTATATGGTTGAATTTTTACAA
Unaligned ( gi|23 ): AATGCTTCTTCATCACTTTCACATTCATTCAGAAAACTTATTTGTGGTATTAAAGTAGTTGTTGTGATG