lowQualScore : 111111111111111111111111111111111111111111
lowQualScore : 1 33 1 888888888888888888888888888888888888 333 222222 11 555555555555555555555555555555555555555555 1 22222222222 11111 111 2222222222222 77777777777777777777777777777777777 222222
lowQualScore : 5 3 3 7 777 1 77 3 333333333333333333333333333333333333 6666 555 6666 3 0 5 8 555 000 0 5 44 6 44 333333 3 99 44 66 88888 8 2 333333333333333333333333333333333333333333 3 7 3 8888888 22222222222 3 00000 1 222 44 4 3333333333333 2 4 1 4 33333333333333333333333333333333333 6 55 2 666666 8 2 4
lowQualScore : . . . . ... . .. . .................................... .... ... .... . . . . ... ... . . .. . .. ...... . .. .. .. ..... . . .......................................... . . . ....... ........... . ..... . ... .. . ............. . . . . ................................... . .. . ...... . . .
lowQualScore : 9 9 7 2 888 3 33 3 111111111111111111111111111111111111 5555 444 5555 1 7 7 0 888 999 4 9 66 2 66 777777 6 11 33 88 33333 2 5 333333333333333333333333333333333333333333 4 4 6 1111111 22222222222 7 00000 2 888 66 4 9999999999999 4 4 1 4 99999999999999999999999999999999999 7 88 8 666666 0 5 0
consensus : GATTCAANGACTTGGACATGTTGACTTTA---CTTTCCAATATCAGCAAGTACAATACTGGGTTTCCGTTGAAGAACT----------GTT----------TC-----------AT----A---TCA----GTCA-TGTTAACAACCTGAAATGAAATTAAAATATCAAACTTA---TTGCAGCTNAATTAAT--TGG--AATATATATA-----ATTAAN-GG-TTT-CAAT-----GTACAGTA--GAA-ATATGGAAAGTATA----T--AAGTTTAAGTCCTANCTCTCGCTCTACTTTTCACTTCCCTTAGTCCTT-T--A----TAT--A--TA----ATTATA-----ACATTACAGT-TTTTTTT-CCGTT-TT-------G-----GGGGCCGATGTTCGG-CCCAAT-TCCCC-C-------C---------A-------------T-TT-TCCCCACTAGTTTATGAAAACATTCCCCTAAA-A-GTATATTT-TTTNTNATTTTTT
Reference ( gi|4 ) : GATTCAAAGATTCGGACATGTTGACACTA---CTTTTCAATAACAGCAAA-ACAATACTGGGTTTACGTTGAAGAACT----------GTT----------TT-----------AT----A---TCA----GTCA-TGTTAACAATCTGAAATGAAATTAAAATATTAAATGTA---TCG-AGCTCAATTAAT--TAG--AATATATATA-----ATTAAG-GA-TTT-TAAT-----GTAGAGTATGAAA-ATATGGAAAGTATAAGTATAGAAGTTTAAGTCCTATCTCTCGCTCTACTTTTCACTTGCCTTACTCCTT-T--A----TAT--A--TA----ATTGTA-----ACATTACAGT-TTTTTTT-CCGTT-TT-------G-----GGGGCCGGTGTTCGG-TCCAAT-TCCCC-C-------C---------A-------------T-TT-TCCCCGCTAGTTTATGAAAACATCCCCCTAAA-A-GTTTATTT-TTTCTAATTTTTT
gi|3 : GATTCAAAGATTCGGACATGTTGACACTA---CTTTTCAATAACAGCAAA-ACAATACTGGGTTTACGTTAAAGAACT----------GTT----------TT-----------AT----A---TCA----GTCA-TGTTAACAATCTGAAATGAAATTAAAATATTAAATGTA---TCG-AGCTCAATTAAT--TAG--AATATATATA-----ATTAAG-GA-TTT-TAAT-----GTAGAGTATGAAA-ATATGGAAAGTATAAGTATAGAAGTTTAAGTCCTATCTCTCGCTCTACTTTTCACTTCCCTTACTCCTT-T--A----TAT--A--TA----ATTGTA-----ACATTACAG--TTTTTTT-CCGTT-TT-------G-----GGGGCCGGTGTTCGG-TCCAAT-TTCCC-C-------C---------A-------------T-TT-TCCCCGCTAGTTTATGAAAACATCCCCCTAAA-A-GTTTATTT-TTTCTAATTTTTT
gi|5 : tttaGATTCAATGACTTGGACATGTTTACTTTA---CATTCAAATAACAGCAAGTACAATACTGGGTTTCCGTTGAAGAACTTTTGATCATAGTC----------CC-----------AT----A---TTA----TTCA-CGTTAACAATCTGAAATGAAATTAAAATATCAAACATA---TTGCATCTCAATCGAT--TGG--AATAGATATACAGATATTAAATGG-TTT-CAAT-----GTACAG-ATG-AA-ACAT-GAAAGT-TA-------AAGTTTAA-------CTCTCGCTCTACTTTTCACTTCCCTTAGTCC-----------------------------TA-----AC------GT-TT-------------T-------G-----GGGGCCGATGTTCGG-TCGAAT-TCCTC-T-------C---------
gi|1 : tccagtattcatatatttagatagttttaGATCCAATAACTTGGACATGTTGACTTTA---CCTTCCAATATCAAGAAGCATAATACTTAGTTTCCTTTGAAGAAAT----------TTTGATCATAATCTC-----------AT----A---TCA----GTCA-TATTAACAACCTGAAGAAAAATTAAAATA-CAGACTTA---CTGTAGCTAAATTATT--TGG--AATATATAT------ATTAAG-TATTTT-TAAT-----GTGCAGTA--GAA-ATATGAAA---ATGA------------AAGCCCTAACTCCCGCTTTACTGTTAATTTAATTCGATCCTT-A--A----TAT--ACGTA----ATTATA-----ACATAACAGTGTTTTTTTGCCGTT-TT-------G-----GCGGCCAACGATCGGCTCCATT-TCCAT-C-------C---------ACAAAAAAAATATGT-TTATCCC--CTATTTTATGAAAACATTTCCTTAAA-ACGTATATTTAATTATTATTTTTTcgcaaaacatatgtgttcccattagtt
gi|9 : attcatctcataagaatgtttcgGATTCAATGACTTGGAC---TTTACACT--------CCAACAGCGGCAAGTACAATACTGGGCTTCTGTTGAAGAACTTTTGATCATAGTC----------TC-----------AT----A---TCA----AACA-TATTAACAACCTGAAATGCAATTAAAATATCAAATTCA---TTGCAGCTAAAGTAAT--TGA--AATATATACT-----AT--AT-GG-TTT-CAAT-----GTACAGTA--GAG-ATATGAAAATTA---------------AAGTCTTAATTCTCGCTCTTTTTTACACTTTCCTTAATCCTT-T--A----TAT--ACGCA----ATTATA-----ACATTATAGT-TTTT
gi|7 : atttttctcattagaaaGATTCAAAGACTTCGACATGTTGACTTTAATTTTTTTCAATATCAGTAAGTACAATACTAAGTTTCTCTTGAAGAACC-----------TT----------TT-----------AT----C---AGA----GTCA-TGTTAACAACCTGAAATGAAATTAAAATATCATATTTA---TTGCAGCTAAATAAAT--TGG--AATATATATA-----GTAAAT-GG-TTT-CAAT-----GTAcctgtt
gi|11 : ttcattagaaagttttaGATTCAATGACTTGGACATTGTGACTTTA---TTTTCTAATATCATTTAGTACAATACTAACTTTCCGTTTAAGGCCT----------TTT----------TTGACAGTCTC--AT----A---TAA----GTCA-TGCTAACAACCCGAAATGAAATTAACATATCAAAGTTA---TT---GCATAAATAATAGTAA--AAT-TATcaacagtcgctctacttatcacttcccttagtccttttaatacgtaattataacattacgttttattttcgttttggttttggggtcgaagctcgatcccatttccacaccagtttattgttttcttattttgttttttatg
gi|2 : tttgtttgcagtatttatctcattagaaagtattaATTCAAAGACTTGGACATGTTGTCTTTA---CTTTTCAATATCAGCAAGTGCAATACTAAGTTTCCATTGAAGAACTTTTGACCATAGTC----------TC-----------AT----A---TCA----GTCA-TGTCAACAACCTGAAAAGAAATTAAAATATCAAATTTAAATTAA-ATCTAAATTAAT--TTGCAAATATATATATAT--ACTAAATGG-TTT-CAAT-----TTACAATAT-----ATATAAAAACTA---------AAGTC---GTCCTAACTGTCGCTCTATGTTTCACTTACCTTAGTTCTT-T--C----TATTCA--TA----TTTATA-----GCATTACAG---TTTCTT-CTGTTGTTGGGGGGGG-----GGGGCCGATGTTCGA-CCCAAT-TCCCT-TCGCAAAAC---------A-------------TATT-TTCCCACTAGTTTATAATAATATTCCCCTAAACA----TATTT-TTtagaaacctgtccatgtttattttttaaaatttcaaaagacgaaatgaaatgcattgttttgcatagaacat
gi|6 : tatttatctcatcagaaaggattttCACTA---CTTTTGAATTTAAGCAAATACAATACTGTGTTTCCGTTGAAGAACT----------TTTGA--------TC-----------AC----A---TCA----GTCA-TATTAACAATCTGAAATGAAATTAGAATATCAAATTTA---TTGCAGCTCAATTAAT--TGG--AATACATATA-----CTAAAC-GA-TTT-CAAT-----ATAGAGT---------------AG---AGGTATAAAATTGTAAGTCCTATCTCTCGCTCTACTTTTCACTTCCATTACTCCGT-T--A----TAT--A--TACGTTATTATA-----ACATAACAGT-TTTTTTT-CCGTT-AT-------G-----GGGGCCGATGTTCGG-TCCAATCCCCCC-C-------C---------ACCCCT--------T-TT-TCCCCACTACTTTATGAAAACATTCCTCTAAA-G-GTATATTT-TT
gi|13 : TA---CTTTTCAATATCAGCAAGTTCAATACTGGAATTCCATTGAAAAAC-----------GTT----------TTATCATAGTCTCAT----A---TCA----GTCA-TGTTAACAACCTGAAATGAAATTAAAATATAAAACGGA---TTGCATCT-AATTAAT--TTG--AATGTATATA-----CTAAAT-GG-TTT-CAATAAACAGTAGAGAACTAAATATATc
gi|16 : cattggaaaattttttattcaatggcttggtcttTTCCAATATCAGCAAGTACAATACCGGCGTTCCGTTGAAGAACT-----------TT----------TT-----------ATTACAA---TC------TCA-TATTaatatgta
gi|10 : TCCAATATCAGCAAGTACAATACTGGGTTTTCTTTAGGGACCTTTTCATCATAGTC----------TC-----------AT----A---TCA----GGGA-TGCTAACAAACTGAAGTGATATTAAAATATCAAATTTA---CTGTAGCAAAAGTATT--TTG--AATACATAT------ATTAAG-TA-TTTACAAT-----GTGCAGTA--GAA-ATGTG------ATA---------------------TCTCTTGCTATACTTTTCATTTCCCTTGGTCTTT-T--AAAATTAG--A--TGAC--ATTGTATCGGGACATTACAg
gi|8 : AGCAAGTACAATACTGGGTTTCCGTTGAAGAACT----------TTTGG--------TC-----------AT----AGTCTCAAAGTGTTAATGTCATCAATCTGAAATGAAATTAAAATATCAAACGTA---TTGCATATCAATAAAT--TGG--AAAACATAT------ATTAAATGG-TTT-CAAT-----GTACAGAA--GAA-ATAT-GAAAGT-TA-------AAGTTAAA-------CTCGCGCTCTACTTTTCACTTCCATTAGTCCTT-T--A----TAT--ACGTA----ATTATA-----GCATAACA---TTTTTTT-ACATT-TT-------G-----GGAGCCTATATACGG-CCGAAT-TCTCC-T-------C---------tacgtcacaggcaagcgattaaattcagtcacaatgtt
gi|17 : -ACAATACTGGGTTTCCGTTGAAGAACT----------TTT----------cgcaaaatatatgttttcccatttgt
gi|12 : agt----------GTC----------TC-----------AT----A---GTG----TTCA-TGTTAACAATCTGAAATGAAATTAAAATATCAAACTTA---TTGCATATCAATTAAT--TGG--AATACAGAT------ATTAAACGG-TTT-CAAA-----GTACAGAA--GAA-TTAT-GAAAGT-------TAAAAGTTTAA-------CTCGCGCTCTACTTTTCACTTCCCTTACTTCTTAT--A----TAC--G--TA----ATTATA-----GCATTTCA----TTTTTT-ACATT-TT-------------GGGGCCGATGTTCAG-CCGAAT-TCTCC-T-------C---------ggtcatag
gi|15 : taataataATATATATA-----CTGAAT-GG-TTT-CAAT-----GTACAATA--------GTAGA---TATAACAAT-GA-----AAGTCTTAGCTCTCGCTCTCCTTTTCTCTTCCATTATTTCTT-T--A----cgcaaaatatgttttccc
gi|7 : TCGCTCTACTTATCACTTCCCTTAGTCCTT-TTAA----TAC--G--TA----ATTATA-----ACATTAC-GT-TTTATTT-TCGTT-TT-------GGTTTTGGGGTCGAAGCTCGA-T----------C-C-------C---------A---------------TT-TCCACACCAGTTTAT
gi|14 : ttcattagaaagttttagattcaaagacttcgacatgttgactttaatttttttcaatatcagtaagtacaatactaagtttctcttgaagaaccttttatcagagtcatgttaacaacctgaaatgaaattaaaatatcatatttattgcagctaaataaattggaatatatatagtaaatggtttcaatgtacaacagTTT-CTGTT-GT-------T-----GGGGCCGGTGTTTGG-CCCCAT-TTCTCAC-------CGCAAAACATA-------------T-TT-TTCCTACTAGTTTATGAAAACATTCCCCTAAA-A-G--TATTT-TTTtgttttcttattttgttttttatg
Alignments
lowQualScore : 88888888888888888888888 2222222222 55555555555555555555555555555555 111111 1111111 11111 555555555555555555555555555555555
lowQualScore : 1 1 777 2 33333333333333333333333 5555 444 6666666 2 00 44 2 3 4 44 0000000000 44 3 88 3 99999999999999999999999999999999 3 3 44 888888 7777 55 0 44 0 4 4 3333333 00000 4 4 666666666666666666666666666666666 5 5 88 55 6 1 1
lowQualScore : . . ... . ....................... .... ... ....... . .. .. . . . .. .......... .. . .. . ................................ . . .. ...... .... .. . .. . . . ....... ..... . . ................................. . . .. .. . . .
lowQualScore : 0 1 000 9 00000000000000000000000 7777 777 5555555 9 99 22 1 5 0 66 2222222222 11 1 55 1 00000000000000000000000000000000 1 3 66 555555 7777 00 3 77 9 0 0 0000000 00000 0 0 111111111111111111111111111111111 7 7 33 33 7 0 0
consensus : GATTCAANGACTTGGACATGTTGACTTTA---CTTTCCAATATCAGCAAGTACAATACTGGGTTTCCGTTGAAGAAC-TTTT-------GTC----------TCAT----A---TCA----G--TCA-TGTTAACAACCTGAAATGAAATTAAAATATCAAACTT--ATTGCAGCTNAATTAATTGG--AATATATATA-----ATN-AA-TGGTTT-CAATGTACAGTA--G-AAATATGGAAAGTATA----TA--AGTTTAAGTCCTA-CTCTCGCTCTACTTTTCACTTCCCTTANTCCTT-T--ATAT--A--TA----ATT--ATAACATTACAGT-TTTTTTT-CCGTT-TT-------GG-----GGGCCGATGTTCGGC-CCAAT-TCCCC-C-------C---------A-------------T-TT-TCCCCGCTAGTTTATGAAAACATTCCCCTAAAA-GTATATTT-TTTNTAATTTTTT
Reference ( family-1522 ) : GATTCAANGACTTGGACATGTTGACTTTA---CTTTCCAATATCAGCAAGTACAATACTGGGTTTCCGTTGAAGAAC-T----------GTT----------TCAT----A---TCA----G--TCA-TGTTAACAACCTGAAATGAAATTAAAATATCAAACTT--ATTGCAGCTNAATTAATTGG--AATATATATA-----ATT-AA-NGGTTT-CAATGTACAGTA--G-AAATATGGAAAGTATA----TA--AGTTTAAGTCCTANCTCTCGCTCTACTTTTCACTTCCCTTAGTCCTT-T--ATAT--A--TA----ATT--ATAACATTACAGT-TTTTTTT-CCGTT-TT-------GG-----GGGCCGATGTTCGGC-CCAAT-TCCCC-C-------C---------A-------------T-TT-TCCCCACTAGTTTATGAAAACATTCCCCTAAAA-GTATATTT-TTTNTNATTTTTT
gi|1 : GATCCAATAACTTGGACATGTTGACTTTA---CCTTCCAATATCAAGAAGCATAATACTTAGTTTCCTTTGAAGAAA-T----------TTTGATCATAATCTCAT----A---TCA----G--TCA-TATTAACAACCTGAAGAAAAATTAAAATA-CAGACTT--ACTGTAGCTAAATTATTTGG--AATATATAT------ATT-AAGTATTTT-TAATGTGCAGTA--G-AAATATGAAA-----A----TG--A----AAGCCCTAACTCCCGCTTTACTGTTAATTTAATTCGATCCTT-A--ATAT--ACGTA----ATT--ATAACATAACAGTGTTTTTTTGCCGTT-TT-------GG-----CGGCCAACGATCGGCTCCATT-TCCAT-C-------C---------ACAAAAAAAATATGT-TTATCCC--CTATTTTATGAAAACATTTCCTTAAAACGTATATTTAATTATTATTTTTT
gi|10 : attcatctcataagaatgtttcgTCCAATATCAGCAAGTACAATACTGGGTTTTCTTTAGGGACC-TTTTCATCATAGTC----------TCAT----A---TCA----G--GGA-TGCTAACAAACTGAAGTGATATTAAAATATCAAATTT--ACTGTAGCAAAAGTATTTTG--AATACATAT------ATT-AA-GTATTTACAATGTGCAGTA--G-AAATGTG------ATA----T-----------------CTCTTGCTATACTTTTCATTTCCCTTGGTCTTT-T--A-A-------A----ATTAGATGACATT
gi|11 : GATTCAATGACTTGGACATTGTGACTTTA---TTTTCTAATATCATTTAGTACAATACTAACTTTCCGTTTAAGGCC-TTTTTTGACA-GTC----------TCAT----A---TAA----G--TCA-TGCTAACAACCCGAAATGAAATTAACATATCAAAGTT--ATTGCA--TAAA-TAATgtatcgggacattacatacgtcacaggcaagcgattaaattcagtcacaatgtt
gi|12 : tttgtttgcagtatttatctcattagaaagtatta----------GTC----------TCAT----A---GTG----T--TCA-TGTTAACAATCTGAAATGAAATTAAAATATCAAACTT--ATTGCATATCAATTAATTGG--AATACAGATA-----TTA-AA-CGGTTT-CAAAGTACAGAA--G-AATTAT-GAAAGT-TA----AA--AGTTTAA-------CTCGCGCTCTACTTTTCACTTCCCTTACTTCTTAT--ATAC--G--TA----ATT--ATAGCATTTCA----TTTTTT-ACATT-TT--------G-----GGGCCGATGTTCAGC-CGAAT-TCTCC-T-------C---------agtaaaattattagaaacctgtccatgtttattttttaaaatttcaaaagacgaaatgaaatgcattgttttgcatagaacat
gi|13 : taataataATTCAATGGCTTGG------T--CTTTA---CTTTTCAATATCAGCAAGTTCAATACTGGAATTCCATTGAAAAACGTTTTATCATA-GTC----------TCAT----A---TCA----G--TCA-TGTTAACAACCTGAAATGAAATTAAAATATAAAACGG--ATTGCATCT-AATTAATTTG--AATGTATATA-----CTA-AA-TGGTTT-CAATAAACAGTA--G-AGAACT---AAATATA----TA--Acgcaaaatatgttttccc
gi|14 : cattggaaaattttttTTT-CTGTT-GT-------TG-----GGGCCGGTGTTTGGC-CCCAT-TTCTCAC-------CGCAAAACATA-------------T-TT-TTCCTACTAGTTTATGAAAACATTCCCCTAAAA-G--TATTT-TTTATtatgta
gi|15 : ATATATATA-----CTG-AA-TGGTTT-CAATGTACAATA--GTAGATAT----AACA-A----TG--A----AAGTCTTAGCTCTCGCTCTCCTTTTCTCTTCCATTATTTCTT-T--Ag
gi|16 : TTCCAATATCAGCAAGTACAATACCGGCGTTCCGTTGAAGAAC-T-----------TT----------TTATTACAA---TC--------TCA-TATT
gi|17 : AGTACAATACTGGGTTTCCGTTGAAGAAC-T----------TTTGG--------TCAT----A---g
gi|2 : ATTCAAAGACTTGGACATGTTGTCTTTA---CTTTTCAATATCAGCAAGTGCAATACTAAGTTTCCATTGAAGAAC-TTTTGACCATAGTC----------TCAT----A---TCA----G--TCA-TGTCAACAACCTGAAAAGAAATTAAAATATCAAATTTAAATTAAATCTAAATTAATTTGCAAATATATATATAT--ACTAAA-TGGTTT-CAATTTACAATA--T---ATATAAAAACTA-------A--AGTC---GTCCTAACTGTCGCTCTATGTTTCACTTACCTTAGTTCTT-T--CTATTCA--TA----TTT--ATAGCATTACAG---TTTCTT-CTGTTGTTGGGGGGGGG-----GGGCCGATGTTCGAC-CCAAT-TCCCT-TCGCAAAAC---------A-------------TATT-TTCCCACTAGTTTATAATAATATTCCCCTAAA---CATATTT-TTg
gi|3 : tatttatctcatcagaaaggattttGATTCAAAGATTCGGACATGTTGACACTA---CTTTTCAATAACAGCAAA-ACAATACTGGGTTTACGTTAAAGAAC-T----------GTT----------TTAT----A---TCA----G--TCA-TGTTAACAATCTGAAATGAAATTAAAATATTAAATGT--ATCG-AGCTCAATTAATTAG--AATATATATA-----ATT-AA-GGATTT-TAATGTAGAGTATGA-AAATATGGAAAGTATAAGTATAGAAGTTTAAGTCCTATCTCTCGCTCTACTTTTCACTTCCCTTACTCCTT-T--ATAT--A--TA----ATT--GTAACATTACAGT-TTT-TTT-CCGTT-TT-------GG-----GGGCCGGTGTTCGGT-CCAAT-TTCCC-C-------C---------A-------------T-TT-TCCCCGCTAGTTTATGAAAACATCCCCCTAAAA-GTTTATTT-TTTCTAATTTTTT
gi|4 : tttaGATTCAAAGATTCGGACATGTTGACACTA---CTTTTCAATAACAGCAAA-ACAATACTGGGTTTACGTTGAAGAAC-T----------GTT----------TTAT----A---TCA----G--TCA-TGTTAACAATCTGAAATGAAATTAAAATATTAAATGT--ATCG-AGCTCAATTAATTAG--AATATATATA-----ATT-AA-GGATTT-TAATGTAGAGTATGA-AAATATGGAAAGTATAAGTATAGAAGTTTAAGTCCTATCTCTCGCTCTACTTTTCACTTGCCTTACTCCTT-T--ATAT--A--TA----ATT--GTAACATTACAGT-TTTTTTT-CCGTT-TT-------GG-----GGGCCGGTGTTCGGT-CCAAT-TCCCC-C-------C---------A-------------T-TT-TCCCCGCTAGTTTATGAAAACATCCCCCTAAAA-GTTTATTT-TTTCTAATTTTTT
gi|5 : GATTCAATGACTTGGACATGTTTACTTTA---CATTCAAATAACAGCAAGTACAATACTGGGTTTCCGTTGAAGAAC-TTTTGATCATAGTC----------CCAT----A---TTA----T--TCA-CGTTAACAATCTGAAATGAAATTAAAATATCAAACAT--ATTGCATCTCAATCGATTGG--AATAGATATACAGATATTAAA-TGGTTT-CAATGTACAGAT--G-AAACAT-GAAAGT-TA-----A--AGTTTAA-------CTCTCGCTCTACTTTTCACTTCCCTTAGTCC---------------------------TAAC------GT-TT-------------T-------GG-----GGGCCGATGTTCGGT-CGAAT-TCCTC-T-------C---------
gi|6 : tccagtattcatatatttagatagttttaTA---CTTTTGAATTTAAGCAAATACAATACTGTGTTTCCGTTGAAGAAC-T----------TTTGA--------TCAC----A---TCA----G--TCA-TATTAACAATCTGAAATGAAATTAGAATATCAAATTT--ATTGCAGCTCAATTAATTGG--AATACATATA-----CTA-AA-CGATTT-CAATATAGAGTA--G----------AGGTATA----AA--ATTGTAAGTCCTATCTCTCGCTCTACTTTTCACTTCCATTACTCCGT-T--ATAT--A--TACGTTATT--ATAACATAACAGT-TTTTTTT-CCGTT-AT-------GG-----GGGCCGATGTTCGGT-CCAATCCCCCC-C-------C---------ACCCCT--------T-TT-TCCCCACTACTTTATGAAAACATTCCTCTAAAG-GTATATTT-TTcgcaaaacatatgtgttcccattagtt
gi|7 : cacGATTCAAAGACTTCGACATGTTGACTTTAATTTTTTTCAATATCAGTAAGTACAATACTAAGTTTCTCTTGAAGAAC-C-----------TT----------T--T----A---TCA----GAGTCA-TGTTAACAACCTGAAATGAAATTAAAATATCATATTT--ATTGCAGCTAAATAAATTGG--AATATATATA-----GTA-AA-TGGTTT-CAATGTACAACA--G-c
gi|7 : ttcattagaaagttttaTCGCTCTACTTATCACTTCCCTTAGTCCTT-TTAATAC--G--TA----ATT--ATAACATTAC-GT-TTTATTT-TCGTT-TT-------GGTTTTGGGGTCGAAGCTCG------AT-----C-C-------C---------A-------------T-TT--CCACACCAGTTTATtcgctctacttatcacttcccttagtccttttaatacgtaattataacattacgttttattttcgttttggttttggggtcgaagctcgatcccatttccacaccagtttattgttttcttattttgttttttatg
gi|8 : ttcattagaaagttttagattcaaagacttcgacatgttgactttaatttttttcaatatcagtaagtacaatactaagtttctcttgaagaaccttttatcagagtcatgttaacaacctgaaatgaaattaaaatatcatatttattgcagctaaataaattggaatatatatagtaaatggtttcaatgtacaacagAGCAAGTACAATACTGGGTTTCCGTTGAAGAAC-T----------TTTGG--------TCAT----AGTCTCAAAGTG--TTAATGTCATCAATCTGAAATGAAATTAAAATATCAAACGT--ATTGCATATCAATAAATTGG--AAAACATATA-----TTA-AA-TGGTTT-CAATGTACAGAA--G-AAATAT-GAAAGT-TA-----A--AGTTAAA-------CTCGCGCTCTACTTTTCACTTCCATTAGTCCTT-T--ATAT--ACGTA----ATT--ATAGCATAACA---TTTTTTT-ACATT-TT-------GG-----GAGCCTATATACGGC-CGAAT-TCTCC-T-------C---------tgttttcttattttgttttttatg
gi|9 : GATTCAATGACTTGGAC--------TTTA---CACTCCAACAGCGGCAAGTACAATACTGGGCTTCTGTTGAAGAAC-TTTTGATCATAGTC----------TCAT----A---TCA----A--ACA-TATTAACAACCTGAAATGCAATTAAAATATCAAATTC--ATTGCAGCTAAAGTAATTGA--AATATATACT-----AT---A-TGGTTT-CAATGTACAGTA--G-AGATATGAAAATTA---------------AAGTCTTAATTCTCGCTCTTTTTTACACTTTCCTTAATCCTT-T--ATAT--ACGCA----ATT--ATAACATTATAGT-TTTTcgcaaaatatatgttttcccatttgt
Alignments
lowQualScore : 66666666666666666 2222222 777777777777777777777777777777777 111111 1111111 11111 555555555555555555555555555555555
lowQualScore : 1 1 777 2 22222222222222222 444 6666 44 3 00 44 2 3 4 44 4444444 4 88 3 777777777777777777777777777777777 1 3 44 888888 7777 55 0 44 0 4 4 3333333 00000 4 4 666666666666666666666666666666666 5 5 2 88 55 6 1
lowQualScore : . . ... . ................. ... .... .. . .. .. . . . .. ....... . .. . ................................. . . .. ...... .... .. . .. . . . ....... ..... . . ................................. . . . .. .. . .
lowQualScore : 0 1 000 9 99999999999999999 777 5555 22 1 99 22 1 5 0 66 9999999 0 55 1 444444444444444444444444444444444 0 3 66 555555 7777 00 3 77 9 0 0 0000000 00000 0 0 111111111111111111111111111111111 7 7 7 33 33 7 0
consensus : GATTCAANGACTTGGACATGTTGACTTTA---CTTTCCAATATCAGCAAGTACAATACTGGGTTTCCGTTGAAGAAC-TTTT-------G-------TCTCATA---TCA----G--TCA-TGTTAACAACCTGAAATGAAATTAAAATATCAAACTT--ATTGCAGCTNAATTAATTGG--AATATATATA-N-----TAAATGGTTTCAATGTACAGTA--G-AAATATGGAAAGTATA----TA--AGTTTAAGTCCT-A-CTCTCGCTCTACTTTTCACTTCCCTTANTCCTT-T--ATAT--A--TA----ATT--ATAACATTACAGT-TTTTTTT-CCGTT-TT-------GG-----GGGCCGATGTTCGGC-CCAAT-TCCCC-C-------C---------A-------------T-TT-TCCCCGCTAGTTTATGAAAACATTCCCCTAAAA-GTATATTT-TTTNTAATTTTTT
Reference ( family-1522 ) : GATTCAANGACTTGGACATGTTGACTTTA---CTTTCCAATATCAGCAAGTACAATACTGGGTTTCCGTTGAAGAAC-TTTT-------G-------TCTCATA---TCA----G--TCA-TGTTAACAACCTGAAATGAAATTAAAATATCAAACTT--ATTGCAGCTNAATTAATTGG--AATATATATA-A-----TNAATGGTTTCAATGTACAGTA--G-AAATATGGAAAGTATA----TA--AGTTTAAGTCCT-A-CTCTCGCTCTACTTTTCACTTCCCTTANTCCTT-T--ATAT--A--TA----ATT--ATAACATTACAGT-TTTTTTT-CCGTT-TT-------GG-----GGGCCGATGTTCGGC-CCAAT-TCCCC-C-------C---------A-------------T-TT-TCCCCGCTAGTTTATGAAAACATTCCCCTAAAA-GTATATTT-TTTNTAATTTTTT
gi|1 : GATCCAATAACTTGGACATGTTGACTTTA---CCTTCCAATATCAAGAAGCATAATACTTAGTTTCCTTTGAAGAAA-TTTT-------GATCATAATCTCATA---TCA----G--TCA-TATTAACAACCTGAAGAAAAATTAAAATA-CAGACTT--ACTGTAGCTAAATTATTTGG--AATATATATA-T-----TAAGTATTTTTAATGTGCAGTA--G-AAATATGAAA-----A----TG--A----AAGCCCTAA-CTCCCGCTTTACTGTTAATTTAATTCGATCCTT-A--ATAT--ACGTA----ATT--ATAACATAACAGTGTTTTTTTGCCGTT-TT-------GG-----CGGCCAACGATCGGCTCCATT-TCCAT-C-------C---------ACAAAAAAAATATGT-TTATCCC--CTATTTTATGAAAACATTTCCTTAAAACGTATATTTAATTATTATTTTTT
gi|10 : attcatctcataagaatgtttcgTCCAATATCAGCAAGTACAATACTGGGTTTTCTTTAGGGACC-TTTTCATCATAG-------TCTCATA---TCA----G--GGA-TGCTAACAAACTGAAGTGATATTAAAATATCAAATTT--ACTGTAGCAAAAGTATTTTG--AATACATATA-T-----TAAGTATTTACAATGTGCAGTA--G-AAATGTG------ATA----T------------------CTCTTGCTATACTTTTCATTTCCCTTGGTCTTT-T--A-A-------A----ATTAGATGACATT
gi|11 : GATTCAATGACTTGGACATTGTGACTTTA---TTTTCTAATATCATTTAGTACAATACTAACTTTCCGTTTAAGGCC-TTTTTTGACA-G-------TCTCATA---TAA----G--TCA-TGCTAACAACCCGAAATGAAATTAACATATCAAAGTT--ATTGCA--TAAA-TAATgtatcgggacattacatacgtcacaggcaagcgattaaattcagtcacaatgtt
gi|12 : tttgtttgcagtatttatctcattagaaagtatta-------G-------TCTCATA---GTG----T--TCA-TGTTAACAATCTGAAATGAAATTAAAATATCAAACTT--ATTGCATATCAATTAATTGG--AATACAGATA-T-----TAAACGGTTTCAAAGTACAGAA--G-AATTAT-GAAAGT-TA----AA--AGTTTA-------A-CTCGCGCTCTACTTTTCACTTCCCTTACTTCTTAT--ATAC--G--TA----ATT--ATAGCATTTCA----TTTTTT-ACATT-TT--------G-----GGGCCGATGTTCAGC-CGAAT-TCTCC-T-------C---------agtaaaattattagaaacctgtccatgtttattttttaaaatttcaaaagacgaaatgaaatgcattgttttgcatagaacat
gi|13 : taataataATTCAATGGCTTGG------T--CTTTA---CTTTTCAATATCAGCAAGTTCAATACTGGAATTCCATTGAAAAACGTTTTATCATA-G-------TCTCATA---TCA----G--TCA-TGTTAACAACCTGAAATGAAATTAAAATATAAAACGG--ATTGCATCT-AATTAATTTG--AATGTATATA-C-----TAAATGGTTTCAATAAACAGTA--G-AGAACT---AAATATA----TA--Acgcaaaatatgttttccc
gi|14 : cattggaaaattttttTTT-CTGTT-GT-------TG-----GGGCCGGTGTTTGGC-CCCAT-TTCTCAC-------CGCAAAACATA-------------T-TT-TTCCTACTAGTTTATGAAAACATTCCCCTAAAA-G--TATTT-TTTAtatgta
gi|15 : ATATATATA-C-----TGAATGGTTTCAATGTACAATA--GTAGATAT----AACA-A----TG--A----AAGTCTT-AGCTCTCGCTCTCCTTTTCTCTTCCATTATTTCTT-T--Ag
gi|16 : TTCCAATATCAGCAAGTACAATACCGGCGTTCCGTTGAAGAAC-TTTTTATTACAA-------TCTCATA---T
gi|17 : AGTACAATACTGGGTTTCCGTTGAAGAAC-TTTT-------G--------GTCATA---tg
gi|2 : ATTCAAAGACTTGGACATGTTGTCTTTA---CTTTTCAATATCAGCAAGTGCAATACTAAGTTTCCATTGAAGAAC-TTTTGACCATAG-------TCTCATA---TCA----G--TCA-TGTCAACAACCTGAAAAGAAATTAAAATATCAAATTTAAATTAAATCTAAATTAATTTGCAAATATATATATATAC--TAAATGGTTTCAATTTACAATA--T---ATATAAAAACTA-------A--AGTC---GTCCTAA-CTGTCGCTCTATGTTTCACTTACCTTAGTTCTT-T--CTATTCA--TA----TTT--ATAGCATTACAG---TTTCTT-CTGTTGTTGGGGGGGGG-----GGGCCGATGTTCGAC-CCAAT-TCCCT-TCGCAAAAC---------A-------------TATT-TTCCCACTAGTTTATAATAATATTCCCCTAAA---CATATTT-TTg
gi|3 : tatttatctcatcagaaaggattttGATTCAAAGATTCGGACATGTTGACACTA---CTTTTCAATAACAGCAAA-ACAATACTGGGTTTACGTTAAAGAAC-T----------G-------TTTTATA---TCA----G--TCA-TGTTAACAATCTGAAATGAAATTAAAATATTAAATGT--ATCG-AGCTCAATTAATTAG--AATATATATA-A-----TTAAGGATTTTAATGTAGAGTATGA-AAATATGGAAAGTATAAGTATAGAAGTTTAAGTCCT-ATCTCTCGCTCTACTTTTCACTTCCCTTACTCCTT-T--ATAT--A--TA----ATT--GTAACATTACAGT-TTT-TTT-CCGTT-TT-------GG-----GGGCCGGTGTTCGGT-CCAAT-TTCCC-C-------C---------A-------------T-TT-TCCCCGCTAGTTTATGAAAACATCCCCCTAAAA-GTTTATTT-TTTCTAATTTTTT
gi|4 : tttaGATTCAAAGATTCGGACATGTTGACACTA---CTTTTCAATAACAGCAAA-ACAATACTGGGTTTACGTTGAAGAAC-T----------G-------TTTTATA---TCA----G--TCA-TGTTAACAATCTGAAATGAAATTAAAATATTAAATGT--ATCG-AGCTCAATTAATTAG--AATATATATA-A-----TTAAGGATTTTAATGTAGAGTATGA-AAATATGGAAAGTATAAGTATAGAAGTTTAAGTCCT-ATCTCTCGCTCTACTTTTCACTTGCCTTACTCCTT-T--ATAT--A--TA----ATT--GTAACATTACAGT-TTTTTTT-CCGTT-TT-------GG-----GGGCCGGTGTTCGGT-CCAAT-TCCCC-C-------C---------A-------------T-TT-TCCCCGCTAGTTTATGAAAACATCCCCCTAAAA-GTTTATTT-TTTCTAATTTTTT
gi|5 : GATTCAATGACTTGGACATGTTTACTTTA---CATTCAAATAACAGCAAGTACAATACTGGGTTTCCGTTGAAGAAC-TTTTGATCATAG-------TCCCATA---TTA----T--TCA-CGTTAACAATCTGAAATGAAATTAAAATATCAAACAT--ATTGCATCTCAATCGATTGG--AATAGATATACAGATATTAAATGGTTTCAATGTACAGAT--G-AAACAT-GAAAGT-TA-----A--AGTTTA-------A-CTCTCGCTCTACTTTTCACTTCCCTTAGTCC---------------------------TAAC------GT-TT-------------T-------GG-----GGGCCGATGTTCGGT-CGAAT-TCCTC-T-------C---------
gi|6 : tccagtattcatatatttagatagttttaTA---CTTTTGAATTTAAGCAAATACAATACTGTGTTTCCGTTGAAGAAC-TTTT-------G--------ATCACA---TCA----G--TCA-TATTAACAATCTGAAATGAAATTAGAATATCAAATTT--ATTGCAGCTCAATTAATTGG--AATACATATA-C-----TAAACGATTTCAATATAGAGTA--G----------AGGTATA----AA--ATTGTAAGTCCT-ATCTCTCGCTCTACTTTTCACTTCCATTACTCCGT-T--ATAT--A--TACGTTATT--ATAACATAACAGT-TTTTTTT-CCGTT-AT-------GG-----GGGCCGATGTTCGGT-CCAATCCCCCC-C-------C---------ACCCCT--------T-TT-TCCCCACTACTTTATGAAAACATTCCTCTAAAG-GTATATTT-TTcgcaaaacatatgtgttcccattagtt
gi|7 : cacGATTCAAAGACTTCGACATGTTGACTTTAATTTTTTTCAATATCAGTAAGTACAATACTAAGTTTCTCTTGAAGAAC-CTTT--------------------TA---TCA----GAGTCA-TGTTAACAACCTGAAATGAAATTAAAATATCATATTT--ATTGCAGCTAAATAAATTGG--AATATATATA-G-----TAAATGGTTTCAATGTACAACA--G-c
gi|7 : ttcattagaaagttttaTCGCTCTACTTATCACTTCCCTTAGTCCTT-TTAATAC--G--TA----ATT--ATAACATTAC-GT-TTTATTT-TCGTT-TT-------GGTTTTGGGGTCGAAGCTCG------AT-----C-C-------C---------A-------------T-TT--CCACACCAGTTTATtcgctctacttatcacttcccttagtccttttaatacgtaattataacattacgttttattttcgttttggttttggggtcgaagctcgatcccatttccacaccagtttattgttttcttattttgttttttatg
gi|8 : ttcattagaaagttttagattcaaagacttcgacatgttgactttaatttttttcaatatcagtaagtacaatactaagtttctcttgaagaaccttttatcagagtcatgttaacaacctgaaatgaaattaaaatatcatatttattgcagctaaataaattggaatatatatagtaaatggtttcaatgtacaacagAGCAAGTACAATACTGGGTTTCCGTTGAAGAAC-TTTT-------G-------G-TCATAGTCTCAAAGTG--TTAATGTCATCAATCTGAAATGAAATTAAAATATCAAACGT--ATTGCATATCAATAAATTGG--AAAACATATA-T-----TAAATGGTTTCAATGTACAGAA--G-AAATAT-GAAAGT-------TA--AAGTTAA------A-CTCGCGCTCTACTTTTCACTTCCATTAGTCCTT-T--ATAT--ACGTA----ATT--ATAGCATAACA---TTTTTTT-ACATT-TT-------GG-----GAGCCTATATACGGC-CGAAT-TCTCC-T-------C---------tgttttcttattttgttttttatg
gi|9 : GATTCAATGACTTGGAC--------TTTA---CACTCCAACAGCGGCAAGTACAATACTGGGCTTCTGTTGAAGAAC-TTTT-------GATCATAGTCTCATA---TCA----A--ACA-TATTAACAACCTGAAATGCAATTAAAATATCAAATTC--ATTGCAGCTAAAGTAATTGA--AATATATACT-A-----T--ATGGTTTCAATGTACAGTA--G-AGATATGAAAATTA---------------AAGTCTTAA-TTCTCGCTCTTTTTTACACTTTCCTTAATCCTT-T--ATAT--ACGCA----ATT--ATAACATTATAGT-TTTTcgcaaaatatatgttttcccatttgt
Alignments
lowQualScore : 66666666666666666 777777777777777777777777777777777 111111 1111111 11111 555555555555555555555555555555555
lowQualScore : 1 1 777 2 22222222222222222 444 6666 44 3 00 44 2 3 4 3 77777 44 6666 1 88 3 777777777777777777777777777777777 1 3 44 888888 7777 55 0 44 0 4 4 3333333 00000 4 4 666666666666666666666666666666666 5 5 2 88 55 6 1
lowQualScore : . . ... . ................. ... .... .. . .. .. . . . . ..... .. .... . .. . ................................. . . .. ...... .... .. . .. . . . ....... ..... . . ................................. . . . .. .. . .
lowQualScore : 0 1 000 9 99999999999999999 777 5555 22 1 99 22 1 5 0 1 77777 22 5555 0 55 1 444444444444444444444444444444444 0 3 66 555555 7777 00 3 77 9 0 0 0000000 00000 0 0 111111111111111111111111111111111 7 7 7 33 33 7 0
consensus : GATTCAANGACTTGGACATGTTGACTTTA---CTTTCCAATATCAGCAAGTACAATACTGGGTTTCCGTTGAAGAAC-TTTT-------G-------TCTCATA---TCA----G--TCA-TGTTAACAACCTGAAATGAAATTAAAATATCAAACTT--ATTGCAGCTNAATTAA-TTGGA-----AT--ATAT----ATACTAAATGGTTTCAATGTACAGTA--G-AAATATGGAAAGTATA----TA--AGTTTAAGTCCT-A-CTCTCGCTCTACTTTTCACTTCCCTTANTCCTT-T--ATAT--A--TA----ATT--ATAACATTACAGT-TTTTTTT-CCGTT-TT-------GG-----GGGCCGATGTTCGGC-CCAAT-TCCCC-C-------C---------A-------------T-TT-TCCCCGCTAGTTTATGAAAACATTCCCCTAAAA-GTATATTT-TTTNTAATTTTTT
Reference ( family-1522 ) : GATTCAANGACTTGGACATGTTGACTTTA---CTTTCCAATATCAGCAAGTACAATACTGGGTTTCCGTTGAAGAAC-TTTT-------G-------TCTCATA---TCA----G--TCA-TGTTAACAACCTGAAATGAAATTAAAATATCAAACTT--ATTGCAGCTNAATTAA-TTGGA-----AT--ATAT----ATANTAAATGGTTTCAATGTACAGTA--G-AAATATGGAAAGTATA----TA--AGTTTAAGTCCT-A-CTCTCGCTCTACTTTTCACTTCCCTTANTCCTT-T--ATAT--A--TA----ATT--ATAACATTACAGT-TTTTTTT-CCGTT-TT-------GG-----GGGCCGATGTTCGGC-CCAAT-TCCCC-C-------C---------A-------------T-TT-TCCCCGCTAGTTTATGAAAACATTCCCCTAAAA-GTATATTT-TTTNTAATTTTTT
gi|1 : GATCCAATAACTTGGACATGTTGACTTTA---CCTTCCAATATCAAGAAGCATAATACTTAGTTTCCTTTGAAGAAA-TTTT-------GATCATAATCTCATA---TCA----G--TCA-TATTAACAACCTGAAGAAAAATTAAAATA-CAGACTT--ACTGTAGCTAAATTAT-TTGGA-----AT--ATAT----ATATTAAGTATTTTTAATGTGCAGTA--G-AAATATGAAA-----A----TG--A----AAGCCCTAA-CTCCCGCTTTACTGTTAATTTAATTCGATCCTT-A--ATAT--ACGTA----ATT--ATAACATAACAGTGTTTTTTTGCCGTT-TT-------GG-----CGGCCAACGATCGGCTCCATT-TCCAT-C-------C---------ACAAAAAAAATATGT-TTATCCC--CTATTTTATGAAAACATTTCCTTAAAACGTATATTTAATTATTATTTTTT
gi|10 : attcatctcataagaatgtttcgTCCAATATCAGCAAGTACAATACTGGGTTTTCTTTAGGGACC-TTTTCATCATAG-------TCTCATA---TCA----G--GGA-TGCTAACAAACTGAAGTGATATTAAAATATCAAATTT--ACTGTAGCAAAAGTAT-TTTGA-----AT--ACAT----ATATTAAGTATTTACAATGTGCAGTA--G-AAATGTG------ATA----T------------------CTCTTGCTATACTTTTCATTTCCCTTGGTCTTT-T--A-A-------A----ATTAGATGACATT
gi|11 : GATTCAATGACTTGGACATTGTGACTTTA---TTTTCTAATATCATTTAGTACAATACTAACTTTCCGTTTAAGGCC-TTTTTTGACA-G-------TCTCATA---TAA----G--TCA-TGCTAACAACCCGAAATGAAATTAACATATCAAAGTT--ATTGCA--TAAA-TAA-Tgtatcgggacattacatacgtcacaggcaagcgattaaattcagtcacaatgtt
gi|12 : tttgtttgcagtatttatctcattagaaagtatta-------G-------TCTCATA---GTG----T--TCA-TGTTAACAATCTGAAATGAAATTAAAATATCAAACTT--ATTGCATATCAATTAA-TTGGA-----AT--ACAG----ATATTAAACGGTTTCAAAGTACAGAA--G-AATTAT-GAAAGT-TA----AA--AGTTTA-------A-CTCGCGCTCTACTTTTCACTTCCCTTACTTCTTAT--ATAC--G--TA----ATT--ATAGCATTTCA----TTTTTT-ACATT-TT--------G-----GGGCCGATGTTCAGC-CGAAT-TCTCC-T-------C---------agtaaaattattagaaacctgtccatgtttattttttaaaatttcaaaagacgaaatgaaatgcattgttttgcatagaacat
gi|13 : taataataATTCAATGGCTTGG------T--CTTTA---CTTTTCAATATCAGCAAGTTCAATACTGGAATTCCATTGAAAAACGTTTTATCATA-G-------TCTCATA---TCA----G--TCA-TGTTAACAACCTGAAATGAAATTAAAATATAAAACGG--ATTGCATCT-AATTAA-TTTGA-----AT--GTAT----ATACTAAATGGTTTCAATAAACAGTA--G-AGAACT---AAATATA----TA--Acgcaaaatatgttttccc
gi|14 : cattggaaaattttttTTT-CTGTT-GT-------TG-----GGGCCGGTGTTTGGC-CCCAT-TTCTCAC-------CGCAAAACATA-------------T-TT-TTCCTACTAGTTTATGAAAACATTCCCCTAAAA-G--TATTT-TTTAtatgta
gi|15 : -----AT--ATAT----ATACTGAATGGTTTCAATGTACAATA--GTAGATAT----AACA-A----TG--A----AAGTCTT-AGCTCTCGCTCTCCTTTTCTCTTCCATTATTTCTT-T--Ag
gi|16 : TTCCAATATCAGCAAGTACAATACCGGCGTTCCGTTGAAGAAC-TTTTTATTACAA-------TCTCATA---T
gi|17 : AGTACAATACTGGGTTTCCGTTGAAGAAC-TTTT-------G--------GTCATA---tg
gi|2 : ATTCAAAGACTTGGACATGTTGTCTTTA---CTTTTCAATATCAGCAAGTGCAATACTAAGTTTCCATTGAAGAAC-TTTTGACCATAG-------TCTCATA---TCA----G--TCA-TGTCAACAACCTGAAAAGAAATTAAAATATCAAATTTAAATTAAATCTAAATTAATTTGCAAATATAT--ATAT----ATACTAAATGGTTTCAATTTACAATA--T---ATATAAAAACTA-------A--AGTC---GTCCTAA-CTGTCGCTCTATGTTTCACTTACCTTAGTTCTT-T--CTATTCA--TA----TTT--ATAGCATTACAG---TTTCTT-CTGTTGTTGGGGGGGGG-----GGGCCGATGTTCGAC-CCAAT-TCCCT-TCGCAAAAC---------A-------------TATT-TTCCCACTAGTTTATAATAATATTCCCCTAAA---CATATTT-TTg
gi|3 : tatttatctcatcagaaaggattttGATTCAAAGATTCGGACATGTTGACACTA---CTTTTCAATAACAGCAAA-ACAATACTGGGTTTACGTTAAAGAAC-T----------G-------TTTTATA---TCA----G--TCA-TGTTAACAATCTGAAATGAAATTAAAATATTAAATGT--ATCG-AGCTCAATTAA-TTAGA-----AT--ATAT----ATAATTAAGGATTTTAATGTAGAGTATGA-AAATATGGAAAGTATAAGTATAGAAGTTTAAGTCCT-ATCTCTCGCTCTACTTTTCACTTCCCTTACTCCTT-T--ATAT--A--TA----ATT--GTAACATTACAGT-TTT-TTT-CCGTT-TT-------GG-----GGGCCGGTGTTCGGT-CCAAT-TTCCC-C-------C---------A-------------T-TT-TCCCCGCTAGTTTATGAAAACATCCCCCTAAAA-GTTTATTT-TTTCTAATTTTTT
gi|4 : tttaGATTCAAAGATTCGGACATGTTGACACTA---CTTTTCAATAACAGCAAA-ACAATACTGGGTTTACGTTGAAGAAC-T----------G-------TTTTATA---TCA----G--TCA-TGTTAACAATCTGAAATGAAATTAAAATATTAAATGT--ATCG-AGCTCAATTAA-TTAGA-----AT--ATAT----ATAATTAAGGATTTTAATGTAGAGTATGA-AAATATGGAAAGTATAAGTATAGAAGTTTAAGTCCT-ATCTCTCGCTCTACTTTTCACTTGCCTTACTCCTT-T--ATAT--A--TA----ATT--GTAACATTACAGT-TTTTTTT-CCGTT-TT-------GG-----GGGCCGGTGTTCGGT-CCAAT-TCCCC-C-------C---------A-------------T-TT-TCCCCGCTAGTTTATGAAAACATCCCCCTAAAA-GTTTATTT-TTTCTAATTTTTT
gi|5 : GATTCAATGACTTGGACATGTTTACTTTA---CATTCAAATAACAGCAAGTACAATACTGGGTTTCCGTTGAAGAAC-TTTTGATCATAG-------TCCCATA---TTA----T--TCA-CGTTAACAATCTGAAATGAAATTAAAATATCAAACAT--ATTGCATCTCAATCGA-TTGGA-----ATAGATATACAGATATTAAATGGTTTCAATGTACAGAT--G-AAACAT-GAAAGT-TA-----A--AGTTTA-------A-CTCTCGCTCTACTTTTCACTTCCCTTAGTCC---------------------------TAAC------GT-TT-------------T-------GG-----GGGCCGATGTTCGGT-CGAAT-TCCTC-T-------C---------
gi|6 : tccagtattcatatatttagatagttttaTA---CTTTTGAATTTAAGCAAATACAATACTGTGTTTCCGTTGAAGAAC-TTTT-------G--------ATCACA---TCA----G--TCA-TATTAACAATCTGAAATGAAATTAGAATATCAAATTT--ATTGCAGCTCAATTAA-TTGGA-----AT--ACAT----ATACTAAACGATTTCAATATAGAGTA--G----------AGGTATA----AA--ATTGTAAGTCCT-ATCTCTCGCTCTACTTTTCACTTCCATTACTCCGT-T--ATAT--A--TACGTTATT--ATAACATAACAGT-TTTTTTT-CCGTT-AT-------GG-----GGGCCGATGTTCGGT-CCAATCCCCCC-C-------C---------ACCCCT--------T-TT-TCCCCACTACTTTATGAAAACATTCCTCTAAAG-GTATATTT-TTcgcaaaacatatgtgttcccattagtt
gi|7 : cacGATTCAAAGACTTCGACATGTTGACTTTAATTTTTTTCAATATCAGTAAGTACAATACTAAGTTTCTCTTGAAGAAC-CTTT--------------------TA---TCA----GAGTCA-TGTTAACAACCTGAAATGAAATTAAAATATCATATTT--ATTGCAGCTAAATAAA-TTGGA-----AT--ATAT----ATAGTAAATGGTTTCAATGTACAACA--G-c
gi|7 : ttcattagaaagttttaTCGCTCTACTTATCACTTCCCTTAGTCCTT-TTAATAC--G--TA----ATT--ATAACATTAC-GT-TTTATTT-TCGTT-TT-------GGTTTTGGGGTCGAAGCTCG------AT-----C-C-------C---------A-------------T-TT--CCACACCAGTTTATtcgctctacttatcacttcccttagtccttttaatacgtaattataacattacgttttattttcgttttggttttggggtcgaagctcgatcccatttccacaccagtttattgttttcttattttgttttttatg
gi|8 : ttcattagaaagttttagattcaaagacttcgacatgttgactttaatttttttcaatatcagtaagtacaatactaagtttctcttgaagaaccttttatcagagtcatgttaacaacctgaaatgaaattaaaatatcatatttattgcagctaaataaattggaatatatatagtaaatggtttcaatgtacaacagAGCAAGTACAATACTGGGTTTCCGTTGAAGAAC-TTTT-------G-------G-TCATAGTCTCAAAGTG--TTAATGTCATCAATCTGAAATGAAATTAAAATATCAAACGT--ATTGCATATCAATAAA-TTGGA-----AA--ACAT----ATATTAAATGGTTTCAATGTACAGAA--G-AAATAT-GAAAGT-------TA--AAGTTAA------A-CTCGCGCTCTACTTTTCACTTCCATTAGTCCTT-T--ATAT--ACGTA----ATT--ATAGCATAACA---TTTTTTT-ACATT-TT-------GG-----GAGCCTATATACGGC-CGAAT-TCTCC-T-------C---------tgttttcttattttgttttttatg
gi|9 : GATTCAATGACTTGGAC--------TTTA---CACTCCAACAGCGGCAAGTACAATACTGGGCTTCTGTTGAAGAAC-TTTT-------GATCATAGTCTCATA---TCA----A--ACA-TATTAACAACCTGAAATGCAATTAAAATATCAAATTC--ATTGCAGCTAAAGTAA-TTGAA---------ATAT----ATACTATATGGTTTCAATGTACAGTA--G-AGATATGAAAATTA---------------AAGTCTTAA-TTCTCGCTCTTTTTTACACTTTCCTTAATCCTT-T--ATAT--ACGCA----ATT--ATAACATTATAGT-TTTTcgcaaaatatatgttttcccatttgt
Alignments
lowQualScore : 66666666666666666 777777777777777777777777777777777 111111 1111111 11111 555555555555555555555555555555555
lowQualScore : 1 1 777 2 22222222222222222 444 6666 44 3 00 44 2 3 4 3 77777 9999999 88 3 777777777777777777777777777777777 1 3 44 888888 7777 55 0 44 0 4 4 3333333 00000 4 4 666666666666666666666666666666666 5 5 2 88 55 6 1
lowQualScore : . . ... . ................. ... .... .. . .. .. . . . . ..... ....... .. . ................................. . . .. ...... .... .. . .. . . . ....... ..... . . ................................. . . . .. .. . .
lowQualScore : 0 1 000 9 99999999999999999 777 5555 22 1 99 22 1 5 0 1 77777 5555555 55 1 444444444444444444444444444444444 0 3 66 555555 7777 00 3 77 9 0 0 0000000 00000 0 0 111111111111111111111111111111111 7 7 7 33 33 7 0
consensus : GATTCAANGACTTGGACATGTTGACTTTA---CTTTCCAATATCAGCAAGTACAATACTGGGTTTCCGTTGAAGAAC-TTTT-------G-------TCTCATA---TCA----G--TCA-TGTTAACAACCTGAAATGAAATTAAAATATCAAACTT--ATTGCAGCTNAATTAA-TTGGA-----ATATATATAC------TAAATGGTTTCAATGTACAGTA--G-AAATATGGAAAGTATA----TA--AGTTTAAGTCCT-A-CTCTCGCTCTACTTTTCACTTCCCTTANTCCTT-T--ATAT--A--TA----ATT--ATAACATTACAGT-TTTTTTT-CCGTT-TT-------GG-----GGGCCGATGTTCGGC-CCAAT-TCCCC-C-------C---------A-------------T-TT-TCCCCGCTAGTTTATGAAAACATTCCCCTAAAA-GTATATTT-TTTNTAATTTTTT
Reference ( family-1522 ) : GATTCAANGACTTGGACATGTTGACTTTA---CTTTCCAATATCAGCAAGTACAATACTGGGTTTCCGTTGAAGAAC-TTTT-------G-------TCTCATA---TCA----G--TCA-TGTTAACAACCTGAAATGAAATTAAAATATCAAACTT--ATTGCAGCTNAATTAA-TTGGA-----ATATATATAC------TAAATGGTTTCAATGTACAGTA--G-AAATATGGAAAGTATA----TA--AGTTTAAGTCCT-A-CTCTCGCTCTACTTTTCACTTCCCTTANTCCTT-T--ATAT--A--TA----ATT--ATAACATTACAGT-TTTTTTT-CCGTT-TT-------GG-----GGGCCGATGTTCGGC-CCAAT-TCCCC-C-------C---------A-------------T-TT-TCCCCGCTAGTTTATGAAAACATTCCCCTAAAA-GTATATTT-TTTNTAATTTTTT
gi|1 : GATCCAATAACTTGGACATGTTGACTTTA---CCTTCCAATATCAAGAAGCATAATACTTAGTTTCCTTTGAAGAAA-TTTT-------GATCATAATCTCATA---TCA----G--TCA-TATTAACAACCTGAAGAAAAATTAAAATA-CAGACTT--ACTGTAGCTAAATTAT-TTGGA-----ATATATATAT------TAAGTATTTTTAATGTGCAGTA--G-AAATATGAAA-----A----TG--A----AAGCCCTAA-CTCCCGCTTTACTGTTAATTTAATTCGATCCTT-A--ATAT--ACGTA----ATT--ATAACATAACAGTGTTTTTTTGCCGTT-TT-------GG-----CGGCCAACGATCGGCTCCATT-TCCAT-C-------C---------ACAAAAAAAATATGT-TTATCCC--CTATTTTATGAAAACATTTCCTTAAAACGTATATTTAATTATTATTTTTT
gi|10 : attcatctcataagaatgtttcgTCCAATATCAGCAAGTACAATACTGGGTTTTCTTTAGGGACC-TTTTCATCATAG-------TCTCATA---TCA----G--GGA-TGCTAACAAACTGAAGTGATATTAAAATATCAAATTT--ACTGTAGCAAAAGTAT-TTTGA-----ATACATATAT------TAAGTATTTACAATGTGCAGTA--G-AAATGTG------ATA----T------------------CTCTTGCTATACTTTTCATTTCCCTTGGTCTTT-T--A-A-------A----ATTAGATGACATT
gi|11 : GATTCAATGACTTGGACATTGTGACTTTA---TTTTCTAATATCATTTAGTACAATACTAACTTTCCGTTTAAGGCC-TTTTTTGACA-G-------TCTCATA---TAA----G--TCA-TGCTAACAACCCGAAATGAAATTAACATATCAAAGTT--ATTGCA--TAAA-TAA-Tgtatcgggacattacatacgtcacaggcaagcgattaaattcagtcacaatgtt
gi|12 : tttgtttgcagtatttatctcattagaaagtatta-------G-------TCTCATA---GTG----T--TCA-TGTTAACAATCTGAAATGAAATTAAAATATCAAACTT--ATTGCATATCAATTAA-TTGGA-----ATACAGATAT------TAAACGGTTTCAAAGTACAGAA--G-AATTAT-GAAAGT-TA----AA--AGTTTA-------A-CTCGCGCTCTACTTTTCACTTCCCTTACTTCTTAT--ATAC--G--TA----ATT--ATAGCATTTCA----TTTTTT-ACATT-TT--------G-----GGGCCGATGTTCAGC-CGAAT-TCTCC-T-------C---------agtaaaattattagaaacctgtccatgtttattttttaaaatttcaaaagacgaaatgaaatgcattgttttgcatagaacat
gi|13 : taataataATTCAATGGCTTGG------T--CTTTA---CTTTTCAATATCAGCAAGTTCAATACTGGAATTCCATTGAAAAACGTTTTATCATA-G-------TCTCATA---TCA----G--TCA-TGTTAACAACCTGAAATGAAATTAAAATATAAAACGG--ATTGCATCT-AATTAA-TTTGA-----ATGTATATAC------TAAATGGTTTCAATAAACAGTA--G-AGAACT---AAATATA----TA--Acgcaaaatatgttttccc
gi|14 : cattggaaaattttttTTT-CTGTT-GT-------TG-----GGGCCGGTGTTTGGC-CCCAT-TTCTCAC-------CGCAAAACATA-------------T-TT-TTCCTACTAGTTTATGAAAACATTCCCCTAAAA-G--TATTT-TTTAtatgta
gi|15 : -----ATATATATAC------TGAATGGTTTCAATGTACAATA--GTAGATAT----AACA-A----TG--A----AAGTCTT-AGCTCTCGCTCTCCTTTTCTCTTCCATTATTTCTT-T--Ag
gi|16 : TTCCAATATCAGCAAGTACAATACCGGCGTTCCGTTGAAGAAC-TTTTTATTACAA-------TCTCATA---T
gi|17 : AGTACAATACTGGGTTTCCGTTGAAGAAC-TTTT-------G--------GTCATA---tg
gi|2 : ATTCAAAGACTTGGACATGTTGTCTTTA---CTTTTCAATATCAGCAAGTGCAATACTAAGTTTCCATTGAAGAAC-TTTTGACCATAG-------TCTCATA---TCA----G--TCA-TGTCAACAACCTGAAAAGAAATTAAAATATCAAATTTAAATTAAATCTAAATTAATTTGCAAATATATATATATAC------TAAATGGTTTCAATTTACAATA--T---ATATAAAAACTA-------A--AGTC---GTCCTAA-CTGTCGCTCTATGTTTCACTTACCTTAGTTCTT-T--CTATTCA--TA----TTT--ATAGCATTACAG---TTTCTT-CTGTTGTTGGGGGGGGG-----GGGCCGATGTTCGAC-CCAAT-TCCCT-TCGCAAAAC---------A-------------TATT-TTCCCACTAGTTTATAATAATATTCCCCTAAA---CATATTT-TTg
gi|3 : tatttatctcatcagaaaggattttGATTCAAAGATTCGGACATGTTGACACTA---CTTTTCAATAACAGCAAA-ACAATACTGGGTTTACGTTAAAGAAC-T----------G-------TTTTATA---TCA----G--TCA-TGTTAACAATCTGAAATGAAATTAAAATATTAAATGT--ATCG-AGCTCAATTAA-TTAGA-----ATATATATAA------TTAAGGATTTTAATGTAGAGTATGA-AAATATGGAAAGTATAAGTATAGAAGTTTAAGTCCT-ATCTCTCGCTCTACTTTTCACTTCCCTTACTCCTT-T--ATAT--A--TA----ATT--GTAACATTACAGT-TTT-TTT-CCGTT-TT-------GG-----GGGCCGGTGTTCGGT-CCAAT-TTCCC-C-------C---------A-------------T-TT-TCCCCGCTAGTTTATGAAAACATCCCCCTAAAA-GTTTATTT-TTTCTAATTTTTT
gi|4 : tttaGATTCAAAGATTCGGACATGTTGACACTA---CTTTTCAATAACAGCAAA-ACAATACTGGGTTTACGTTGAAGAAC-T----------G-------TTTTATA---TCA----G--TCA-TGTTAACAATCTGAAATGAAATTAAAATATTAAATGT--ATCG-AGCTCAATTAA-TTAGA-----ATATATATAA------TTAAGGATTTTAATGTAGAGTATGA-AAATATGGAAAGTATAAGTATAGAAGTTTAAGTCCT-ATCTCTCGCTCTACTTTTCACTTGCCTTACTCCTT-T--ATAT--A--TA----ATT--GTAACATTACAGT-TTTTTTT-CCGTT-TT-------GG-----GGGCCGGTGTTCGGT-CCAAT-TCCCC-C-------C---------A-------------T-TT-TCCCCGCTAGTTTATGAAAACATCCCCCTAAAA-GTTTATTT-TTTCTAATTTTTT
gi|5 : GATTCAATGACTTGGACATGTTTACTTTA---CATTCAAATAACAGCAAGTACAATACTGGGTTTCCGTTGAAGAAC-TTTTGATCATAG-------TCCCATA---TTA----T--TCA-CGTTAACAATCTGAAATGAAATTAAAATATCAAACAT--ATTGCATCTCAATCGA-TTGGA-----ATAGATATACAGATATTAAATGGTTTCAATGTACAGAT--G-AAACAT-GAAAGT-TA-----A--AGTTTA-------A-CTCTCGCTCTACTTTTCACTTCCCTTAGTCC---------------------------TAAC------GT-TT-------------T-------GG-----GGGCCGATGTTCGGT-CGAAT-TCCTC-T-------C---------
gi|6 : tccagtattcatatatttagatagttttaTA---CTTTTGAATTTAAGCAAATACAATACTGTGTTTCCGTTGAAGAAC-TTTT-------G--------ATCACA---TCA----G--TCA-TATTAACAATCTGAAATGAAATTAGAATATCAAATTT--ATTGCAGCTCAATTAA-TTGGA-----ATACATATAC------TAAACGATTTCAATATAGAGTA--G----------AGGTATA----AA--ATTGTAAGTCCT-ATCTCTCGCTCTACTTTTCACTTCCATTACTCCGT-T--ATAT--A--TACGTTATT--ATAACATAACAGT-TTTTTTT-CCGTT-AT-------GG-----GGGCCGATGTTCGGT-CCAATCCCCCC-C-------C---------ACCCCT--------T-TT-TCCCCACTACTTTATGAAAACATTCCTCTAAAG-GTATATTT-TTcgcaaaacatatgtgttcccattagtt
gi|7 : cacGATTCAAAGACTTCGACATGTTGACTTTAATTTTTTTCAATATCAGTAAGTACAATACTAAGTTTCTCTTGAAGAAC-CTTT--------------------TA---TCA----GAGTCA-TGTTAACAACCTGAAATGAAATTAAAATATCATATTT--ATTGCAGCTAAATAAA-TTGGA-----ATATATATAG------TAAATGGTTTCAATGTACAACA--G-c
gi|7 : ttcattagaaagttttaTCGCTCTACTTATCACTTCCCTTAGTCCTT-TTAATAC--G--TA----ATT--ATAACATTAC-GT-TTTATTT-TCGTT-TT-------GGTTTTGGGGTCGAAGCTCG------AT-----C-C-------C---------A-------------T-TT--CCACACCAGTTTATtcgctctacttatcacttcccttagtccttttaatacgtaattataacattacgttttattttcgttttggttttggggtcgaagctcgatcccatttccacaccagtttattgttttcttattttgttttttatg
gi|8 : ttcattagaaagttttagattcaaagacttcgacatgttgactttaatttttttcaatatcagtaagtacaatactaagtttctcttgaagaaccttttatcagagtcatgttaacaacctgaaatgaaattaaaatatcatatttattgcagctaaataaattggaatatatatagtaaatggtttcaatgtacaacagAGCAAGTACAATACTGGGTTTCCGTTGAAGAAC-TTTT-------G-------G-TCATAGTCTCAAAGTG--TTAATGTCATCAATCTGAAATGAAATTAAAATATCAAACGT--ATTGCATATCAATAAA-TTGGA-----AAACATATAT------TAAATGGTTTCAATGTACAGAA--G-AAATAT-GAAAGT-------TA--AAGTTAA------A-CTCGCGCTCTACTTTTCACTTCCATTAGTCCTT-T--ATAT--ACGTA----ATT--ATAGCATAACA---TTTTTTT-ACATT-TT-------GG-----GAGCCTATATACGGC-CGAAT-TCTCC-T-------C---------tgttttcttattttgttttttatg
gi|9 : GATTCAATGACTTGGAC--------TTTA---CACTCCAACAGCGGCAAGTACAATACTGGGCTTCTGTTGAAGAAC-TTTT-------GATCATAGTCTCATA---TCA----A--ACA-TATTAACAACCTGAAATGCAATTAAAATATCAAATTC--ATTGCAGCTAAAGTAA-TTGAA-------ATATATAC------TATATGGTTTCAATGTACAGTA--G-AGATATGAAAATTA---------------AAGTCTTAA-TTCTCGCTCTTTTTTACACTTTCCTTAATCCTT-T--ATAT--ACGCA----ATT--ATAACATTATAGT-TTTTcgcaaaatatatgttttcccatttgt
Alignments
lowQualScore : 66666666666666666 777777777777777777777777777777777 111111 1111111 11111 555555555555555555555555555555555
lowQualScore : 1 1 777 2 22222222222222222 444 6666 44 3 00 44 2 3 4 3 77777 9999999 88 3 777777777777777777777777777777777 1 3 44 888888 7777 55 0 44 0 4 4 3333333 00000 4 4 666666666666666666666666666666666 5 5 2 88 55 6 1
lowQualScore : . . ... . ................. ... .... .. . .. .. . . . . ..... ....... .. . ................................. . . .. ...... .... .. . .. . . . ....... ..... . . ................................. . . . .. .. . .
lowQualScore : 0 1 000 9 99999999999999999 777 5555 22 1 99 22 1 5 0 1 77777 5555555 55 1 444444444444444444444444444444444 0 3 66 555555 7777 00 3 77 9 0 0 0000000 00000 0 0 111111111111111111111111111111111 7 7 7 33 33 7 0
consensus : GATTCAANGACTTGGACATGTTGACTTTA---CTTTCCAATATCAGCAAGTACAATACTGGGTTTCCGTTGAAGAAC-TTTT-------G-------TCTCATA---TCA----G--TCA-TGTTAACAACCTGAAATGAAATTAAAATATCAAACTT--ATTGCAGCTNAATTAA-TTGGA-----ATATATATAC------TAAATGGTTTCAATGTACAGTA--G-AAATATGGAAAGTATA----TA--AGTTTAAGTCCT-A-CTCTCGCTCTACTTTTCACTTCCCTTANTCCTT-T--ATAT--A--TA----ATT--ATAACATTACAGT-TTTTTTT-CCGTT-TT-------GG-----GGGCCGATGTTCGGC-CCAAT-TCCCC-C-------C---------A-------------T-TT-TCCCCGCTAGTTTATGAAAACATTCCCCTAAAA-GTATATTT-TTTNTAATTTTTT
Reference ( family-1522 ) : GATTCAANGACTTGGACATGTTGACTTTA---CTTTCCAATATCAGCAAGTACAATACTGGGTTTCCGTTGAAGAAC-TTTT-------G-------TCTCATA---TCA----G--TCA-TGTTAACAACCTGAAATGAAATTAAAATATCAAACTT--ATTGCAGCTNAATTAA-TTGGA-----ATATATATAC------TAAATGGTTTCAATGTACAGTA--G-AAATATGGAAAGTATA----TA--AGTTTAAGTCCT-A-CTCTCGCTCTACTTTTCACTTCCCTTANTCCTT-T--ATAT--A--TA----ATT--ATAACATTACAGT-TTTTTTT-CCGTT-TT-------GG-----GGGCCGATGTTCGGC-CCAAT-TCCCC-C-------C---------A-------------T-TT-TCCCCGCTAGTTTATGAAAACATTCCCCTAAAA-GTATATTT-TTTNTAATTTTTT
gi|1 : GATCCAATAACTTGGACATGTTGACTTTA---CCTTCCAATATCAAGAAGCATAATACTTAGTTTCCTTTGAAGAAA-TTTT-------GATCATAATCTCATA---TCA----G--TCA-TATTAACAACCTGAAGAAAAATTAAAATA-CAGACTT--ACTGTAGCTAAATTAT-TTGGA-----ATATATATAT------TAAGTATTTTTAATGTGCAGTA--G-AAATATGAAA-----A----TG--A----AAGCCCTAA-CTCCCGCTTTACTGTTAATTTAATTCGATCCTT-A--ATAT--ACGTA----ATT--ATAACATAACAGTGTTTTTTTGCCGTT-TT-------GG-----CGGCCAACGATCGGCTCCATT-TCCAT-C-------C---------ACAAAAAAAATATGT-TTATCCC--CTATTTTATGAAAACATTTCCTTAAAACGTATATTTAATTATTATTTTTT
gi|10 : attcatctcataagaatgtttcgTCCAATATCAGCAAGTACAATACTGGGTTTTCTTTAGGGACC-TTTTCATCATAG-------TCTCATA---TCA----G--GGA-TGCTAACAAACTGAAGTGATATTAAAATATCAAATTT--ACTGTAGCAAAAGTAT-TTTGA-----ATACATATAT------TAAGTATTTACAATGTGCAGTA--G-AAATGTG------ATA----T------------------CTCTTGCTATACTTTTCATTTCCCTTGGTCTTT-T--A-A-------A----ATTAGATGACATT
gi|11 : GATTCAATGACTTGGACATTGTGACTTTA---TTTTCTAATATCATTTAGTACAATACTAACTTTCCGTTTAAGGCC-TTTTTTGACA-G-------TCTCATA---TAA----G--TCA-TGCTAACAACCCGAAATGAAATTAACATATCAAAGTT--ATTGCA--TAAA-TAA-Tgtatcgggacattacatacgtcacaggcaagcgattaaattcagtcacaatgtt
gi|12 : tttgtttgcagtatttatctcattagaaagtatta-------G-------TCTCATA---GTG----T--TCA-TGTTAACAATCTGAAATGAAATTAAAATATCAAACTT--ATTGCATATCAATTAA-TTGGA-----ATACAGATAT------TAAACGGTTTCAAAGTACAGAA--G-AATTAT-GAAAGT-TA----AA--AGTTTA-------A-CTCGCGCTCTACTTTTCACTTCCCTTACTTCTTAT--ATAC--G--TA----ATT--ATAGCATTTCA----TTTTTT-ACATT-TT--------G-----GGGCCGATGTTCAGC-CGAAT-TCTCC-T-------C---------agtaaaattattagaaacctgtccatgtttattttttaaaatttcaaaagacgaaatgaaatgcattgttttgcatagaacat
gi|13 : taataataATTCAATGGCTTGG------T--CTTTA---CTTTTCAATATCAGCAAGTTCAATACTGGAATTCCATTGAAAAACGTTTTATCATA-G-------TCTCATA---TCA----G--TCA-TGTTAACAACCTGAAATGAAATTAAAATATAAAACGG--ATTGCATCT-AATTAA-TTTGA-----ATGTATATAC------TAAATGGTTTCAATAAACAGTA--G-AGAACT---AAATATA----TA--Acgcaaaatatgttttccc
gi|14 : cattggaaaattttttTTT-CTGTT-GT-------TG-----GGGCCGGTGTTTGGC-CCCAT-TTCTCAC-------CGCAAAACATA-------------T-TT-TTCCTACTAGTTTATGAAAACATTCCCCTAAAA-G--TATTT-TTTAtatgta
gi|15 : -----ATATATATAC------TGAATGGTTTCAATGTACAATA--GTAGATAT----AACA-A----TG--A----AAGTCTT-AGCTCTCGCTCTCCTTTTCTCTTCCATTATTTCTT-T--Ag
gi|16 : TTCCAATATCAGCAAGTACAATACCGGCGTTCCGTTGAAGAAC-TTTTTATTACAA-------TCTCATA---T
gi|17 : AGTACAATACTGGGTTTCCGTTGAAGAAC-TTTT-------G--------GTCATA---tg
gi|2 : ATTCAAAGACTTGGACATGTTGTCTTTA---CTTTTCAATATCAGCAAGTGCAATACTAAGTTTCCATTGAAGAAC-TTTTGACCATAG-------TCTCATA---TCA----G--TCA-TGTCAACAACCTGAAAAGAAATTAAAATATCAAATTTAAATTAAATCTAAATTAATTTGCAAATATATATATATAC------TAAATGGTTTCAATTTACAATA--T---ATATAAAAACTA-------A--AGTC---GTCCTAA-CTGTCGCTCTATGTTTCACTTACCTTAGTTCTT-T--CTATTCA--TA----TTT--ATAGCATTACAG---TTTCTT-CTGTTGTTGGGGGGGGG-----GGGCCGATGTTCGAC-CCAAT-TCCCT-TCGCAAAAC---------A-------------TATT-TTCCCACTAGTTTATAATAATATTCCCCTAAA---CATATTT-TTg
gi|3 : tatttatctcatcagaaaggattttGATTCAAAGATTCGGACATGTTGACACTA---CTTTTCAATAACAGCAAA-ACAATACTGGGTTTACGTTAAAGAAC-T----------G-------TTTTATA---TCA----G--TCA-TGTTAACAATCTGAAATGAAATTAAAATATTAAATGT--ATCG-AGCTCAATTAA-TTAGA-----ATATATATAA------TTAAGGATTTTAATGTAGAGTATGA-AAATATGGAAAGTATAAGTATAGAAGTTTAAGTCCT-ATCTCTCGCTCTACTTTTCACTTCCCTTACTCCTT-T--ATAT--A--TA----ATT--GTAACATTACAGT-TTT-TTT-CCGTT-TT-------GG-----GGGCCGGTGTTCGGT-CCAAT-TTCCC-C-------C---------A-------------T-TT-TCCCCGCTAGTTTATGAAAACATCCCCCTAAAA-GTTTATTT-TTTCTAATTTTTT
gi|4 : tttaGATTCAAAGATTCGGACATGTTGACACTA---CTTTTCAATAACAGCAAA-ACAATACTGGGTTTACGTTGAAGAAC-T----------G-------TTTTATA---TCA----G--TCA-TGTTAACAATCTGAAATGAAATTAAAATATTAAATGT--ATCG-AGCTCAATTAA-TTAGA-----ATATATATAA------TTAAGGATTTTAATGTAGAGTATGA-AAATATGGAAAGTATAAGTATAGAAGTTTAAGTCCT-ATCTCTCGCTCTACTTTTCACTTGCCTTACTCCTT-T--ATAT--A--TA----ATT--GTAACATTACAGT-TTTTTTT-CCGTT-TT-------GG-----GGGCCGGTGTTCGGT-CCAAT-TCCCC-C-------C---------A-------------T-TT-TCCCCGCTAGTTTATGAAAACATCCCCCTAAAA-GTTTATTT-TTTCTAATTTTTT
gi|5 : GATTCAATGACTTGGACATGTTTACTTTA---CATTCAAATAACAGCAAGTACAATACTGGGTTTCCGTTGAAGAAC-TTTTGATCATAG-------TCCCATA---TTA----T--TCA-CGTTAACAATCTGAAATGAAATTAAAATATCAAACAT--ATTGCATCTCAATCGA-TTGGA-----ATAGATATACAGATATTAAATGGTTTCAATGTACAGAT--G-AAACAT-GAAAGT-TA-----A--AGTTTA-------A-CTCTCGCTCTACTTTTCACTTCCCTTAGTCC---------------------------TAAC------GT-TT-------------T-------GG-----GGGCCGATGTTCGGT-CGAAT-TCCTC-T-------C---------
gi|6 : tccagtattcatatatttagatagttttaTA---CTTTTGAATTTAAGCAAATACAATACTGTGTTTCCGTTGAAGAAC-TTTT-------G--------ATCACA---TCA----G--TCA-TATTAACAATCTGAAATGAAATTAGAATATCAAATTT--ATTGCAGCTCAATTAA-TTGGA-----ATACATATAC------TAAACGATTTCAATATAGAGTA--G----------AGGTATA----AA--ATTGTAAGTCCT-ATCTCTCGCTCTACTTTTCACTTCCATTACTCCGT-T--ATAT--A--TACGTTATT--ATAACATAACAGT-TTTTTTT-CCGTT-AT-------GG-----GGGCCGATGTTCGGT-CCAATCCCCCC-C-------C---------ACCCCT--------T-TT-TCCCCACTACTTTATGAAAACATTCCTCTAAAG-GTATATTT-TTcgcaaaacatatgtgttcccattagtt
gi|7 : cacGATTCAAAGACTTCGACATGTTGACTTTAATTTTTTTCAATATCAGTAAGTACAATACTAAGTTTCTCTTGAAGAAC-CTTT--------------------TA---TCA----GAGTCA-TGTTAACAACCTGAAATGAAATTAAAATATCATATTT--ATTGCAGCTAAATAAA-TTGGA-----ATATATATAG------TAAATGGTTTCAATGTACAACA--G-c
gi|7 : ttcattagaaagttttaTCGCTCTACTTATCACTTCCCTTAGTCCTT-TTAATAC--G--TA----ATT--ATAACATTAC-GT-TTTATTT-TCGTT-TT-------GGTTTTGGGGTCGAAGCTCG------AT-----C-C-------C---------A-------------T-TT--CCACACCAGTTTATtcgctctacttatcacttcccttagtccttttaatacgtaattataacattacgttttattttcgttttggttttggggtcgaagctcgatcccatttccacaccagtttattgttttcttattttgttttttatg
gi|8 : ttcattagaaagttttagattcaaagacttcgacatgttgactttaatttttttcaatatcagtaagtacaatactaagtttctcttgaagaaccttttatcagagtcatgttaacaacctgaaatgaaattaaaatatcatatttattgcagctaaataaattggaatatatatagtaaatggtttcaatgtacaacagAGCAAGTACAATACTGGGTTTCCGTTGAAGAAC-TTTT-------G-------G-TCATAGTCTCAAAGTG--TTAATGTCATCAATCTGAAATGAAATTAAAATATCAAACGT--ATTGCATATCAATAAA-TTGGA-----AAACATATAT------TAAATGGTTTCAATGTACAGAA--G-AAATAT-GAAAGT-------TA--AAGTTAA------A-CTCGCGCTCTACTTTTCACTTCCATTAGTCCTT-T--ATAT--ACGTA----ATT--ATAGCATAACA---TTTTTTT-ACATT-TT-------GG-----GAGCCTATATACGGC-CGAAT-TCTCC-T-------C---------tgttttcttattttgttttttatg
gi|9 : GATTCAATGACTTGGAC--------TTTA---CACTCCAACAGCGGCAAGTACAATACTGGGCTTCTGTTGAAGAAC-TTTT-------GATCATAGTCTCATA---TCA----A--ACA-TATTAACAACCTGAAATGCAATTAAAATATCAAATTC--ATTGCAGCTAAAGTAA-TTGAA-------ATATATAC------TATATGGTTTCAATGTACAGTA--G-AGATATGAAAATTA---------------AAGTCTTAA-TTCTCGCTCTTTTTTACACTTTCCTTAATCCTT-T--ATAT--ACGCA----ATT--ATAACATTATAGT-TTTTcgcaaaatatatgttttcccatttgt
blockSeqs : T G ATT G CATCATAGTC GTC AAGT AG A AA T G A T AATAT CAGATAT TG T GGAAAGTATAAGTATAGAAGTTTAAGTCCTAT G A TA TTCA CGTT AG T . G GGGGGGG TTTTG . C ACCGCAAAACATA A . A A CA . A
blockSeqs : T G . . TATTACAATC . . . . . C T A . . T TG . GGAAAGTATAAGTATAGAAGTTTAAGTCCTAT C . . TACG . . T . . . . . . TCGCAAAACA . . A A TT . C
blockSeqs : A G . . GACCATAGTC . . . . . C T C . . T . . AGGTATAAAATTGTAAGTCCTAT T . . TACG . . T . . . . . . CCACCCCT . . G A TT . C
blockSeqs : A G . . GATCATAGTC . . . . . C T A . . C . . AAAAACTAAAGTCGTCCTAA G . . CG . . T . . . . . . CCA . . G G TA .
blockSeqs : A T . . GATCATAGTC . . . . . A G C . . C . . GAAAGTTAAAAGTTTAA C . . TA . . T . . . . . . CCA . . A . . .
blockSeqs : T G . . TTGACAGTC . . . . . C G C . . C . . AACAATGAAAGTCTTAG C . . TA . . T . . . . . . CCA . . A
blockSeqs : A . . . ATCATAGTC . . . . . C T C . . A . . GAAAATTAAAGTCTTAA G . . TA . . . . . . . . .
blockSeqs : T . . . GTC . . . . . C G C . . A . . GAAAGTTAAAGTTTAA C . . CG . . . . . . . . .
blockSeqs : . . GTT . . . . . C G A . . C . . GAAAGTTAAAGTTAAA G . . . . . . . . . . . .
blockSeqs : . GTT . . . . . C T C . . G . . GATAT G . . . . .
blockSeqs : . GG . . . . . . G A . . T . . A . .
blockSeqs : . GA . . . . . . . . . . C . .
blockSeqs : . GG .
blockSeqs : . .
blockSeqCons : TA**** T* CCGCAAAACA*********************** A*
originalCons : GATTCAANGACTTGGACATGTTGACTTTA---CTTTCCAATATCAGCAAGTACAATACTGGGTTTCCGTTGAAGAAC-TTTT-------G-------TCTCATA---TCA----G--TCA-TGTTAACAACCTGAAATGAAATTAAAATATCAAACTT--ATTGCAGCTNAATTAA-TTGGA-----ATATATATAC------TAAATGGTTTCAATGTACAGTA--G-AAATATGGAAAGTATA----TA--AGTTTAAGTCCT-A-CTCTCGCTCTACTTTTCACTTCCCTTANTCCTT-T--ATAT--A--TA----ATT--ATAACATTACAGT-TTTTTTT-CCGTT-TT-------GG-----GGGCCGATGTTCGGC-CCAAT-TCCCC-C-------C---------A-------------T-TT-TCCCCGCTAGTTTATGAAAACATTCCCCTAAAA-GTATATTT-TTTNTAATTTTTT
finalCons : GATTCAANGACTTGGACATGTTGACTTTA---CTTTCCAATATCAGCAAGTACAATACTGGGTTTCCGTTGAAGAAC-TTTT-------G-------TCTCATA---TCA----G--TCA-TGTTAACAACCTGAAATGAAATTAAAATATCAAACTT--ATTGCAGCTNAATTAA-TTGGA-----ATATATATAC------TAAATGGTTTCAATGTACAGTA--G-AAATATGGAAAGTATA----TA--AGTTTAAGTCCT-A-CTCTCGCTCTACTTTTCACTTCCCTTANTCCTT-T--ATATA----TA----ATT--ATAACATTACAGT-TTTTTTT-CCGTT-TT-------GG-----GGGCCGATGTTCGGC-CCAAT-TCCCCCCGCAAAACA-----------------------T-TT-TCCCCGCTAGTTTATGAAAACATTCCCCTAAAA-GTATATTT-TTTNTAATTTTTT
Alignments
lowQualScore : 66666666666666666 777777777777777777777777777777777 111111 2222222222222 22222222
lowQualScore : 1 1 777 2 22222222222222222 444 6666 44 3 00 44 2 3 4 3 77777 9999999 88 3 777777777777777777777777777777777 1 3 44 888888 7777 55 0 99 4 4 0000000000000 4 8 4 4 44 9999 99999999 2 88 55 6 1
lowQualScore : . . ... . ................. ... .... .. . .. .. . . . . ..... ....... .. . ................................. . . .. ...... .... .. . .. . . ............. . . . . .. .... ........ . .. .. . .
lowQualScore : 0 1 000 9 99999999999999999 777 5555 22 1 99 22 1 5 0 1 77777 5555555 55 1 444444444444444444444444444444444 0 3 66 555555 7777 00 3 66 0 0 5555555555555 0 0 0 4 00 4444 33333333 7 33 33 7 0
consensus : GATTCAANGACTTGGACATGTTGACTTTA---CTTTCCAATATCAGCAAGTACAATACTGGGTTTCCGTTGAAGAAC-TTTT-------G-------TCTCATA---TCA----G--TCA-TGTTAACAACCTGAAATGAAATTAAAATATCAAACTT--ATTGCAGCTNAATTAA-TTGGA-----ATATATATAC------TAAATGGTTTCAATGTACAGTA--G-AAATATGGAAAGTATA----TA--AGTTTAAGTCCT-A-CTCTCGCTCTACTTTTCACTTCCCTTANTCCTT-T--ATAT--A--TA----ATT--ATAACATTACAGT-TTTTTTT-CCGTT-TT-------G-----GGGGCCGATGTTCGGC-CCAATTC-C-CC-CCGC----AAAACA----T---TTTCCCCGCTAGTTTATGAAAACATTCCCCTAAAA-GTATATTT-TTTNTAATTTTTT
Reference ( family-1522 ) : GATTCAANGACTTGGACATGTTGACTTTA---CTTTCCAATATCAGCAAGTACAATACTGGGTTTCCGTTGAAGAAC-TTTT-------G-------TCTCATA---TCA----G--TCA-TGTTAACAACCTGAAATGAAATTAAAATATCAAACTT--ATTGCAGCTNAATTAA-TTGGA-----ATATATATAC------TAAATGGTTTCAATGTACAGTA--G-AAATATGGAAAGTATA----TA--AGTTTAAGTCCT-A-CTCTCGCTCTACTTTTCACTTCCCTTANTCCTT-T--ATAT--A--TA----ATT--ATAACATTACAGT-TTTTTTT-CCGTT-TT-------G-----GGGGCCGATGTTCGGC-CCAATTC-C-CC-CCGC----AAAACA----T---TTTCCCCGCTAGTTTATGAAAACATTCCCCTAAAA-GTATATTT-TTTNTAATTTTTT
gi|1 : GATCCAATAACTTGGACATGTTGACTTTA---CCTTCCAATATCAAGAAGCATAATACTTAGTTTCCTTTGAAGAAA-TTTT-------GATCATAATCTCATA---TCA----G--TCA-TATTAACAACCTGAAGAAAAATTAAAATA-CAGACTT--ACTGTAGCTAAATTAT-TTGGA-----ATATATATAT------TAAGTATTTTTAATGTGCAGTA--G-AAATATGAAA-----A----TG--A----AAGCCCTAA-CTCCCGCTTTACTGTTAATTTAATTCGATCCTT-A--ATAT--ACGTA----ATT--ATAACATAACAGTGTTTTTTTGCCGTT-TT-------G-----GCGGCCAACGATCGGCTCCATTTC-C-AT-CCACAAAAAAAATA----TG--TTTATCCCCTATTTTATGAAAACATTTCCTTAAAACGTATATTTAATTATTATTTTTT
gi|10 : attcatctcataagaatgtttcgTCCAATATCAGCAAGTACAATACTGGGTTTTCTTTAGGGACC-TTTTCATCATAG-------TCTCATA---TCA----G--GGA-TGCTAACAAACTGAAGTGATATTAAAATATCAAATTT--ACTGTAGCAAAAGTAT-TTTGA-----ATACATATAT------TAAGTATTTACAATGTGCAGTA--G-AAATGTG------ATA----T------------------CTCTTGCTATACTTTTCATTTCCCTTGGTCTTT-T--A-A-------A----ATTAGATGACATT
gi|11 : GATTCAATGACTTGGACATTGTGACTTTA---TTTTCTAATATCATTTAGTACAATACTAACTTTCCGTTTAAGGCC-TTTTTTGACA-G-------TCTCATA---TAA----G--TCA-TGCTAACAACCCGAAATGAAATTAACATATCAAAGTT--ATTGCA--TAAA-TAA-Tgtatcgggacattacatacgtcacaggcaagcgattaaattcagtcacaatgtt
gi|12 : tttgtttgcagtatttatctcattagaaagtatta-------G-------TCTCATA---GTG----T--TCA-TGTTAACAATCTGAAATGAAATTAAAATATCAAACTT--ATTGCATATCAATTAA-TTGGA-----ATACAGATAT------TAAACGGTTTCAAAGTACAGAA--G-AATTAT-GAAAGT-TA----AA--AGTTTA-------A-CTCGCGCTCTACTTTTCACTTCCCTTACTTCTTAT--ATAC--G--TA----ATT--ATAGCATTTCA----TTTTTT-ACATT-TT-------------GGGGCCGATGTTCAGC-CGAATTCTC-CT-CCGC----AAAATATG--T---TTTCCCagtaaaattattagaaacctgtccatgtttattttttaaaatttcaaaagacgaaatgaaatgcattgttttgcatagaacat
gi|13 : taataataATTCAATGGCTTGG------T--CTTTA---CTTTTCAATATCAGCAAGTTCAATACTGGAATTCCATTGAAAAACGTTTTATCATA-G-------TCTCATA---TCA----G--TCA-TGTTAACAACCTGAAATGAAATTAAAATATAAAACGG--ATTGCATCT-AATTAA-TTTGA-----ATGTATATAC------TAAATGGTTTCAATAAACAGTA--G-AGAACT---AAATATA----TA--A
gi|14 : cattggaaaattttttTTT-CTGTT-GT-------T-----GGGGCCGGTGTTTGGC-CCCATTT-C-TCACCGC----AAAACA----TAT-TTTTCCTACTAGTTTATGAAAACATTCCCCTAAAA-G--TATTT-TTTAtatgta
gi|15 : -----ATATATATAC------TGAATGGTTTCAATGTACAATA--GTAGATAT----AACA-A----TG--A----AAGTCTT-AGCTCTCGCTCTCCTTTTCTCTTCCATTATTTCTT-T--Ag
gi|16 : TTCCAATATCAGCAAGTACAATACCGGCGTTCCGTTGAAGAAC-TTTTTATTACAA-------TCTCATA---T
gi|17 : AGTACAATACTGGGTTTCCGTTGAAGAAC-TTTT-------G--------GTCATA---tg
gi|2 : ATTCAAAGACTTGGACATGTTGTCTTTA---CTTTTCAATATCAGCAAGTGCAATACTAAGTTTCCATTGAAGAAC-TTTTGACCATAG-------TCTCATA---TCA----G--TCA-TGTCAACAACCTGAAAAGAAATTAAAATATCAAATTTAAATTAAATCTAAATTAATTTGCAAATATATATATATAC------TAAATGGTTTCAATTTACAATA--T---ATATAAAAACTA-------A--AGTC---GTCCTAA-CTGTCGCTCTATGTTTCACTTACCTTAGTTCTT-T--CTATTCA--TA----TTT--ATAGCATTACAG---TTTCTT-CTGTTGTTGGGGGGGG-----GGGGCCGATGTTCGAC-CCAATTC-C-CT-TCGC----AAAACA----TA--TTTTCCCACTAGTTTATAATAATATTCCCCTAAA---CATATTT-TTg
gi|3 : tatttatctcatcagaaaggattttGATTCAAAGATTCGGACATGTTGACACTA---CTTTTCAATAACAGCAAA-ACAATACTGGGTTTACGTTAAAGAAC-T----------G-------TTTTATA---TCA----G--TCA-TGTTAACAATCTGAAATGAAATTAAAATATTAAATGT--ATCG-AGCTCAATTAA-TTAGA-----ATATATATAA------TTAAGGATTTTAATGTAGAGTATGA-AAATATGGAAAGTATAAGTATAGAAGTTTAAGTCCT-ATCTCTCGCTCTACTTTTCACTTCCCTTACTCCTT-T--ATAT--A--TA----ATT--GTAACATTACAG--TTTTTTT-CCGTT-TT-------G-----GGGGCCGGTGTTCGGT-CCAATTT-C-CC-C-----------CA----T---TTTCCCCGCTAGTTTATGAAAACATCCCCCTAAAA-GTTTATTT-TTTCTAATTTTTT
gi|4 : tttaGATTCAAAGATTCGGACATGTTGACACTA---CTTTTCAATAACAGCAAA-ACAATACTGGGTTTACGTTGAAGAAC-T----------G-------TTTTATA---TCA----G--TCA-TGTTAACAATCTGAAATGAAATTAAAATATTAAATGT--ATCG-AGCTCAATTAA-TTAGA-----ATATATATAA------TTAAGGATTTTAATGTAGAGTATGA-AAATATGGAAAGTATAAGTATAGAAGTTTAAGTCCT-ATCTCTCGCTCTACTTTTCACTTGCCTTACTCCTT-T--ATAT--A--TA----ATT--GTAACATTACAGT-TTTTTTT-CCGTT-TT-------G-----GGGGCCGGTGTTCGGT-CCAATTC-C-CC-C-----------CA----T---TTTCCCCGCTAGTTTATGAAAACATCCCCCTAAAA-GTTTATTT-TTTCTAATTTTTT
gi|5 : GATTCAATGACTTGGACATGTTTACTTTA---CATTCAAATAACAGCAAGTACAATACTGGGTTTCCGTTGAAGAAC-TTTTGATCATAG-------TCCCATA---TTA----T--TCA-CGTTAACAATCTGAAATGAAATTAAAATATCAAACAT--ATTGCATCTCAATCGA-TTGGA-----ATAGATATACAGATATTAAATGGTTTCAATGTACAGAT--G-AAACAT-GAAAGT-TA-----A--AGTTTA-------A-CTCTCGCTCTACTTTTCACTTCCCTTAGTCC---------------------------TAAC------GT-TT-------------T-------G-----GGGGCCGATGTTCGGT-CGAATTC-CTCT-CCGC----AAAACA----TATGTGTTCCCATTAGTT
gi|6 : tccagtattcatatatttagatagttttaTA---CTTTTGAATTTAAGCAAATACAATACTGTGTTTCCGTTGAAGAAC-TTTT-------G--------ATCACA---TCA----G--TCA-TATTAACAATCTGAAATGAAATTAGAATATCAAATTT--ATTGCAGCTCAATTAA-TTGGA-----ATACATATAC------TAAACGATTTCAATATAGAGTA--G----------AGGTATA----AA--ATTGTAAGTCCT-ATCTCTCGCTCTACTTTTCACTTCCATTACTCCGT-T--ATAT--A--TACGTTATT--ATAACATAACAGT-TTTTTTT-CCGTT-AT-------G-----GGGGCCGATGTTCGGT-CCAATCC-C-CC-CC-C----ACCCCT----T---TTTCCCCACTACTTTATGAAAACATTCCTCTAAAG-GTATATTT-TT
gi|7 : cacGATTCAAAGACTTCGACATGTTGACTTTAATTTTTTTCAATATCAGTAAGTACAATACTAAGTTTCTCTTGAAGAAC-CTTT--------------------TA---TCA----GAGTCA-TGTTAACAACCTGAAATGAAATTAAAATATCATATTT--ATTGCAGCTAAATAAA-TTGGA-----ATATATATAG------TAAATGGTTTCAATGTACAACA--G-c
gi|7 : ttcattagaaagttttaTCGCTCTACTTATCACTTCCCTTAGTCCTT-TTAATAC--G--TA----ATT--ATAACATTAC-GT-TTTATTT-TCGTT-TT-------GGTTTTGGGGTCGAAGCTCGAT-CCCATTT-C-Ctcgctctacttatcacttcccttagtccttttaatacgtaattataacattacgttttattttcgttttggttttggggtcgaagctcgatcccatttccacaccagtttattgttttcttattttgttttttatg
gi|8 : ttcattagaaagttttagattcaaagacttcgacatgttgactttaatttttttcaatatcagtaagtacaatactaagtttctcttgaagaaccttttatcagagtcatgttaacaacctgaaatgaaattaaaatatcatatttattgcagctaaataaattggaatatatatagtaaatggtttcaatgtacaacagAGCAAGTACAATACTGGGTTTCCGTTGAAGAAC-TTTT-------G-------G-TCATAGTCTCAAAGTG--TTAATGTCATCAATCTGAAATGAAATTAAAATATCAAACGT--ATTGCATATCAATAAA-TTGGA-----AAACATATAT------TAAATGGTTTCAATGTACAGAA--G-AAATAT-GAAAGT-------TA--AAGTTAA------A-CTCGCGCTCTACTTTTCACTTCCATTAGTCCTT-T--ATAT--ACGTA----ATT--ATAGCATAACA---TTTTTTT-ACATT-TT-------G-----GGAGCCTATATACGGC-CGAATTCTC-CT-CCGC----AAAATATATGT---TTTCCCacaccagtttattgttttcttattttgttttttatg
gi|9 : GATTCAATGACTTGGAC--------TTTA---CACTCCAACAGCGGCAAGTACAATACTGGGCTTCTGTTGAAGAAC-TTTT-------GATCATAGTCTCATA---TCA----A--ACA-TATTAACAACCTGAAATGCAATTAAAATATCAAATTC--ATTGCAGCTAAAGTAA-TTGAA-------ATATATAC------TATATGGTTTCAATGTACAGTA--G-AGATATGAAAATTA---------------AAGTCTTAA-TTCTCGCTCTTTTTTACACTTTCCTTAATCCTT-T--ATAT--ACGCA----ATT--ATAACATTATAGT-TTTTatttgt