lowQualScore : 111111111111111111111111111111111111111111111111111111111111 11111111111 11111111111111111111111111111
lowQualScore : 1 1 111 1 66666666666666666666666666666666666666 22 44444444444444 2 2222 333333333 6666666666666666666 1 2 1111 1 666666666666666 11 22222 111 11111 9999999999999999999999999999999 11 444444444444444444444444444444444444444444444444444444444444 1 1 11 11111111111 1 333 44444 11 777 777777777777 222 333 333 22 22222 11 1 1 4 11 444444444444444 1 1 1 55 44444 8888888 1 1 1 1 22222 33 1 1 1 1 222 5555555 6666666666 33 00000000000000000000000000000 1
lowQualScore : 6 3 000 99 5 77 99999999999999999999999999999999999999 9999 4 1 22 55 22222222222222 1 777 0000 33 888888888 1 3 7777777777777777777 7 1 1111 44 2 1 444444444444444 1 4 22 33333 1 2 9 444 88888 3333333333333333333333333333333 88 555555555555555555555555555555555555555555555555555555555555 4 5 66 1 4 77 2 22222222222 7 444 66666 2 22 2 000 222222222222 2 666 666 2 222 4 6 22 44444 22 5 0 0 6 6 6 6 6 22 444444444444444 7 6 6 6 7 7 4 99 6 55 6 22222 6 7777777 5 6 7 5 5 44444 00 7 6 6 6 5 6 99 5 5 999 4 8888888 0000000000 55 7 33333333333333333333333333333 4 5 4 2
lowQualScore : . . ... .. . .. ...................................... .... . . .. .. .............. . ... .... .. ......... . . ................... . . .... .. . . ............... . . .. ..... . . . ... ..... ............................... .. ............................................................ . . .. . . .. . ........... . ... ..... . .. . ... ............ . ... ... . ... . . .. ..... .. . . . . . . . . .. ............... . . . . . . . .. . .. . ..... . ....... . . . . . ..... .. . . . . . . .. . . ... . ....... .......... .. . ............................. . . . .
lowQualScore : 0 3 222 22 0 99 99999999999999999999999999999999999999 4444 5 6 77 00 55555555555555 0 222 4444 44 333333333 4 2 0000000000000000000 0 2 8888 88 8 4 888888888888888 0 0 88 66666 0 2 8 000 77777 3333333333333333333333333333333 77 333333333333333333333333333333333333333333333333333333333333 0 0 55 5 0 55 5 00000000000 0 000 55555 5 00 5 000 000000000000 5 000 000 5 000 0 0 00 55555 00 0 5 0 0 0 0 0 0 00 000000000000000 0 0 0 0 0 0 0 00 0 00 0 00000 0 0000000 0 0 0 0 0 00000 00 0 0 0 0 0 0 00 0 5 000 0 0000000 7777777777 77 3 00000000000000000000000000000 0 0 0 5
consensus : TTAAT-TA-AT-TATTTTATT--TCTCAAT--ATATA-------NA-------------CAA-----------AACATTG----GTGAACAATAATAGAAAAAGGAT-AAGAAC--GAAAGCA---TA-ATGC--TTATGAAATTCTTCTCCTAG--TCGTACTATAAATTACACATTT-A-GGCAAAAAGTAAAATAATTTAT-ACATAAATATGTGAAAATAAATTAG-TGATAATGAAAAGAGAA-----AGATATN---ATTACAAAGGTGG-TT-TTACTGATTG--ACATACGCG--ATA-TTT--TTT-------TTAAAACAAC-G-TGAATTTGAAAGAAAACTANAAAT---------------A-ATTG-----TNGGGGT------NGGGNGGGGGGGNAAGNCGTACNACGATATACNNTCANCAGNATGNGATAGNTNTGCTTAAAA-CGTTTTGTGTTCTTTGTGCNTAAAANTGTGTACTGNATC---GAAAATTCGAATA--TTTGNCCCAAAAAGTNAAAATNCTGTTCTCCAAANAGAGGCGTACTNAGGTTGATATTNTCCAAGCCAGACAGTGCNTTG-AGAAGCATTTGCCTTGCAACTCCATGTTTATTTTTGTTTCAATGGAAAAATGCTTTCTATATCACCACNCGANCACAGAG--GAGACTCAGCCACA-TTTTTAATATATATATATATTTTGATTAAGAGATCTACAACTGGTACGGAGTCTCACAGACTGGCTTGTATGCTTCTTTCACCAAAGTTGAANTACCTCGGCACTTTACTTAGGTTCAGATTTNACTTAGCTTGTTTTTAAAGA---------TTTCAGACG-CTTTATTTCATCGGGAAGGNAAACGCCATTCCATNCCCCAAANAGATGACGGNANAAA
Reference ( gi|1 ) : TTAATATA-AT-TATTTTATT--TCTGAAT--ATATA-------TA-------------CAA-----------AGCATTG----GTGAACAATAATAGAAAAAGGAA-AAGAAC--GAAAGCA---CA-ACGT--TGATGAAATTCTTATCCTAG--TTATCCTATAAATTACACATTTTA-GACAAAAAGTAAAATAATTCTT-ACATCAACGTGCGATAATACATCAG-TGATAATGGAATGAGAA-----AGGTATC---ATTACAATAGTG--TT-TTATTGATTG--ACATATATG--ATA-GTT--TCT-------TTGAAA-AAC-G-TTAATTTGAAAGAAAACTAGCAAT---------------ACATT------TAGGGGT------TGAATGGA----AAAACTG-GCAACGCTATACTCTCATCAATATGGAATAGGTCCA-TGAGGATCGATTTGTGATCTTTATATT----AGTATACACTGCATCGAAGAAAATTCGAATATTTTTTTCTC--AAAGTCAAATCTTTGTTAGTCAAAGAGAAGAACATTAAAGTTTGTATATTTGAAATCAGAAAGTGCGTTGAAAAAACACTTACCTCGCAACTTTATAATGATTATAGTGGTAAAGGGAGAATGTTTTCAATATCATCTCACGATTATAGAGAGGAGATTCAGCTACAGTTTTTGAAAAA-A-ATATATTTTTATTGAGAGAACTACAACTGTTACGTAGTCTCGTATGCTGTATTGTTTACCTTTTTCACAAAAATTAAAACATTTCCGCACTTTACTTAAGTTTAAATTTAACTT-ACTTTATTTTAAAGA---------TTTCAGACGATTTTATTTCATC------GTA------ATTCCA-TCTTTGTATAGATGAGGGTAGAAAT
gi|9 : TTAGT-TA-AT-TCTATCATT--TAT---T--GTGAA-------AA-------------CAA-----------AACATTG----GTAAACA-TAATAGAAAAGGAAT-AAGAAC--GAAAGCA---TA-ATGC--TTTTGAAGTTATTTTCCT----TTAT--TAT---TTCCACA
gi|8 : aaatgattcagatataccgtcagagttgtttaccctTAATTTA-GT-T-TTTTATTCTTCTGAAT--ATGTA-------TA-------------CAATGTGTTAACAAAACACTGCATGATGAACAATAATAGAAA------------CTTGAAAGGA---TA-AGAT----ATGAAATTCGTTTCCTGGACTTACACTA--AATTACACATTT
gi|14 : actttcAACATACATGTACTTTATT--TCTCAAT--ATATAATGTGTCCA-------------CAA-----------A-CATTG----GTGAAAAACAATAGAAAAAGGGCTAAGAAC--GAATGCAT--TA-ATGC--TTCTGAAATTCTTgttgtaaaactaattttatgacacaaatatgtaaaaa
gi|5 : tta-TATTTCATT--TCTTACTCTATATA-------TA-------------CAATGTATTCACGAAATATTG----GTGATTGACAATAACAAAGGGAC-AAAAAC--GAAGGCAGTATACATGTACTTATGGAAATAGT-TTCTGG--TCATACTATAACTTACACATT---------ATGGCAAAATA----------------TGGGAAAATAAATTAA-TGATGATGAAAATACAA-----A--TATCTG-ATTTCAAGGGTGGCTT-TTACTAATTG--c
gi|4 : aaacaTTATT--TCTTGAT--ATATA-------TATACAATGTGTAAACAA-----------AATATTG----GTAAACAATAATAAAAAAGGGAT-AAGAAC--GACAG-----------------TG-----CTTCTCCTAG--TCGTACTA-AAACTAAAAATT-----ACACATGGTAAGATTTTTTTTTACAAAAATATGTGAAAACAAATTAG-TGATAATGAAAAGAGAA-----TGAT---------------GTG-------ATTG--TA--ACATACGCG--ATAGGTTTATTT-------TTAAAATAAT-GATGAATTTGAAAGAAAACTTAAAAT---------------A-ATTG-----TTGGGGT------gtac
gi|12 : TATT--TCTCAGT--ATATA----------------------CAA-----------TACATTG----GTATACA-CAA-AAAAAACGGAT-AAGAAC--GAACGCA---TA-AAGC--TTATTAAATTCTTCCCCTA---TGA----ATAAATTGCgacagag
gi|2 : gattagtttaaacaaatcaAAT--GTGTA-------AA-------------CCA-----------AACATTG----GTTAACAATAGCAGAAAACAGAT-AAGAAC--AAAAGCA---TA-ATGC--TTATCAAAATCTTCTCCTAG--TCGTACTATAAATTACACAT-----GGC-AAAAGTAAAATAATTTAT-AAATAAATAT-TGAAAATA-ATTTGCTGACAATGAAAGGAGAA-----AGATATA---AATACAATGGTG--TT-CAACTGATTGTTACATATGTT--ATA-TTT--TTTACCCCTCTTCCCT-CCC-G-TGAGTTTGAAAGAAAACTAGAAATAAATGTTAGTGTGACACATTGGTATCTAGGGAT------AGAGGGGG----TAAGCCG-ACAACGATATACTCTCAACAGAAT-GAATAGGTGTA--------CGTTTTGTGTTCTTTATACA----ATTATGTACTGCATC---GAAAATTCGAATA--TTTGTCTT--AAAGTCAAAATGCTGTTCTCCAAAGAGAAGCGTATTTAGGTTGATATTGTCCAAGCCAGACAGTGCATTGtgagatattt
gi|15 : gatattcATA--------A-------------CAA-----------AAC--TG----GTGAACAATAATAGAAAAAGAAT-AAGAAC--GAAGGC-------------TAATGAAATTCTT---CTAG--cgactctattgtggtgctctttgctttctatatcaccactcgatcacagaggagactcagtcaca
gi|11 : tagtttaaacgtatttacccgtatattcatagtgAA-----------AACATTG----GTGGA----AATAGAAAAAAGAGTAAGTAC--AAAAGCA---TA-ATGC--TTATGAAATTCTTCTCCTAG--TCGTGCTATACATTACAC-CTTTATGGCAAAAAG
gi|6 : ttttgttcctcaattgttacataatgtgttaaaTGAACAATAAAAAATAAAGGAT-AAGAAC--AAAAACA---TA-ATGG--CAATGAAATTCTTCTCCTAT--TCTTACTATAGATTATATATTTAA-GACAAAAAGT--ACTAATTTAT-ACATTTATAAGTGAAAATAAATTAT-TGACATTGAAAATAGAA--------TATCATGATTGCAAAAGTG--TT-TT
gi|16 : CATTAATAGAAAAAAGAT-AAGAAC--GAAAGCA---TA-CTGC--TCATGAAATTTTTgagctcattctta
gi|3 : gttttgtatataaattgtgttaacaccacatcaattac-TGAT--TAGAGTGAGAATAGCAAGTTCTG---ATTACAAAAGTGG-TTATTACTGTTTT--ATACATACGCAATA-TTC--TTT-------TTAAAACAACCA-TGAATTTTTAAGAAAACTATGAAT---------------AAATA------TGGCGGTAATACATGGATGGAGGGGAAAAGCGTACTACAATATACAATCACCAATATGTGATAGTTCTGCTTAAAA-CGTTTTGTG---TTTGTGTTTAAAAGTGTGTACTGAATC---AAAAATTTGAATA---TTGGCCCAAAAAATAAAAATTTTATTCTCCAAATAGAGGGA-ACTAAGGTTAATATTTTTTAAGCTAGACAGTGCTTTG-AGAAGCATTTGCCTTGCAACTCCATGTTTATTTTTGTTTCAATGGAAAAATGcttc
gi|2 : acattacttaaacaaaataaatatatgaaaatgaacTGCTTTCTATATCACCACTCGATCACAGAG--GAGACTCAGTCACAa
gi|7 : gatattcaatgtgtaaaccaaacattggttaacaatagcagaaaacagataagaacaaaagcataatgcttatcaaaatcttctcctagtcgtactataaattacacatggcaaaagtaaaataatttataaataaatattgaaaataatttgctgacaatgaaaggagaaagatataaatacaatggtgttcaactgattgttacatatgttatattttttacccctcttccctcccgtgagtttgaaagaaaactagaaataaatgttagtgtgacacattggtatctagggatagagggggtaagccgacaacgatatactctcaacagaatgaataggtgtacgttttgtgttctttatacaattatgtactgcatcgaaaattcgaatatttgtcttaaagtcaaaatgctgttctccaaagagaagcgtatttaggttgatattgtccaagccagacagtgcattgcgactctattgtggtgctcttATCACACGAGCACAAAG--GAGACTCAGCC----TTTTTAATATATATATATATTTTGATTAAGAGATCTACAACTGGTACGGAGTCTCACAGACTGGCTTGTATGCTTCTTTCACCAAAGTTAAACTACCTTGGCACTTTACTTAGGTTCAGATTTAACTT-GC----TTTTAAAGA----------TGCAGACG--TTTAT
gi|13 : TTGAAATATTTCGACACTTTACTT-AGTTT---TTTTATTTAACTTGTTTTTAAAGATAAAAACAGTTTCAGACG-CTTTA-TTCATCGGGAAGGTA------ATTTCATTCTCTA-ATAGATAACGGAACAAA
gi|17 : ---------TTTCAGACGCTTTTGTTTCATC------GGAAACGCCATTCCA-ATCTCAAAAAGATGACGGTAGAA
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): ACTGTATGCAGACGCGATATTTCTTTAAAATAATCATGAGTTTTAAAAAAAATGAATGTTGGAGTGACAACGAGGACGGAGGGGGAAAGCCGACTATGATATACCCTCAAATTCGCAACAACATATAATAGATCTACTTGAAA
Alignments
lowQualScore : 111 111111 111111 33333333333333333 11111111111 2222 1 111 11111 111 2222222 11111111 999999999999999999999999999999999999999999 2 33333333 11 222222222 444444 222 22 1 2222222222222222 1 11 22222222222222 2 111 11 1111 222 111 22222 4444444444 11 1 999999999999999 3333333
lowQualScore : 777 5 77 2 9999 222222 111111 77777777777777777 99999999999 7777 3 88888 6 6 88888888 0 3 1 5 5555 0 99 1 3 77777 3 3 0 3 2 2 1 1 0 88 555 6 1 1 33333 666 8 6666666 66666666 1 8 6 3 1 888888888888888888888888888888888888888888 1 1 1 1 22 66666666 1 33 11 1 1 222222222 6 0 444444 1 0 1 333 7 1 0 33 1 11 1 0 5 4 0 1 3 1 44 6666666666666666 0 3 88 7 77777777777777 66 0 555 1 1 88 8888 222 4 4 2 4 2 2 2 55 4 2 0 1 11 444 1 99999 4 3333333333 66 0 3 333333333333333 1111111 1 1 1
lowQualScore : ... . .. . .... ...... ...... ................. ........... .... . ..... . . ........ . . . . .... . .. . . ..... . . . . . . . . . .. ... . . . ..... ... . ....... ........ . . . . . .......................................... . . . . .. ........ . .. .. . . ......... . . ...... . . . ... . . . .. . .. . . . . . . . . .. ................ . . .. . .............. .. . ... . . .. .... ... . . . . . . . .. . . . . .. ... . ..... . .......... .. . . ............... ....... . . .
lowQualScore : 777 6 99 9 4444 888888 555555 88888888888888888 00000000000 7777 3 33333 7 7 22222222 4 3 7 7 1111 4 99 6 2 00000 7 3 3 7 5 2 5 0 3 33 888 7 0 0 00000 666 0 0000000 66666666 0 0 6 2 0 777777777777777777777777777777777777777777 0 0 5 0 00 22222222 0 00 55 0 0 555555555 7 7 777777 0 7 0 333 3 0 7 00 0 77 0 7 0 7 7 0 7 0 33 3333333333333333 7 3 33 0 22222222222222 55 0 000 0 0 33 0000 000 0 0 5 0 5 5 5 00 0 5 7 0 33 777 0 33333 7 2222222222 55 0 2 000000000000000 0000000 0 0 0
consensus : TTAAT-T-AATTATTTTATT--TCTCA----AT------ATA------TA---------A-------ACAA-----------AACATTG----GTGAACAATAATAGAAA-----AAGGA-TAAGAACGAAAGCA-TA---ATG--CTTAT-GAAATTCTTCTCCTAGTCGTACTATAAATTACACA-TTT-A-GGCAAAAAGTAAAA-TAA-TTTAT-ACATAAATATGTGAAAATAAATTANTGATAATGAAAANAGAAAGNTATGATTACAANAGTGG-TT-TTACTGATTG--A--CATACGCGATA--TTT-TTT-------TTAAAACAA-C-G-TGAATTTGAAAGAAAACTAGAAATA-AATGTTGG-----------GG----T-------A------GGA--TGG-GGGGGAAAGNCG-ACNACGATATACTCT--------CANCAATATGNAATAGGTCTACTTAAAA-CGTTTTGTGTTCTTTATATT---AAGTATGTACTGCATC---GAAAATTCGAATATTTGTCTC--AAAGTCAAAATTTTGTTCTCCAAAGAGAAG-GNATTAAGGTTNATATTTTTNAAGCCAGACAGTGCGTTG-AGAAGCACTTGCCTCGCGACTCTA-TGT--TGATTTTTGTTTCAA-GGGAGAATGTTCTNNATCACCATC-CACGATCAC--AGAGGAGACTCAGCCACA-TTTTTGATATANANATATATTTTNATTGAGAGANCTACAACTGNTACGNAGTCTCGCANGCTGNNTTGTNTGCCTCTTTCACNAAAGTTAAAATATTTCGGCACTTTACTTAGGTTCAGATTTAACTTA-CTTGNTTTTAAAGA---------TTTCAGACG-CTTT-ATTTCATCGG----GTA------ATTCCAT-CTTCGAATAGATGACGGTAGAAA
Reference ( family-1443 ) : TTAAT-T-AATTATTTTATT--TCTCA----AT------ATA------TA---------N-------ACAA-----------AACATTG----GTGAACAATAATAGAAA-----AAGGA-TAAGAACGAAAGCA-TA---ATG--CTTAT-GAAATTCTTCTCCTAGTCGTACTATAAATTACACA-TTT-A-GGCAAAAAGTAAAA-TAA-TTTAT-ACATAAATATGTGAAAATAAATTAGTGATAATGAAAAGAGAAAGATATNATTACAAAGGTGG-TT-TTACTGATTG--A--CATACGCGATA--TTT-TTT-------TTAAAACAA-C-G-TGAATTTGAAAGAAAACTANAAATA-ATTGTNGG-----------GG----T-------N------GGG--NGG-GGGGGNAAGNCGTACNACGATATACNNT--------CANCAGNATGNGATAGNTNTGCTTAAAA-CGTTTTGTGTTCTTTGTGCNTAAAANTGTGTACTGNATC---GAAAATTCGAATATTTGNCCCAAAAAGTNAAAATNCTGTTCTCCAAANAGAGGCGTACTNAGGTTGATATTNTCCAAGCCAGACAGTGCNTTG-AGAAGCATTTGCCTTGCAACTCCA-TGT--TTATTTTTGTTTCAATGGAAAAATGCTTTCTAT-ATCACCACNCGANCAC--AGAGGAGACTCAGCCACA-TTTTTAATATATATATATATTTTGATTAAGAGATCTACAACTGGTACGGAGTCTCACAGACTGGCTTGTATGCTTCTTTCACCAAAGTTGAANTACCTCGGCACTTTACTTAGGTTCAGATTTNACTTAGCTTGTTTTTAAAGA---------TTTCAGACG-CTTT-ATTTCATCGGGAAGGNAAACGCCATTCCATNCCCCAAANAGATGACGGNANAAA
gi|1 : TTAATAT-AATTATTTTATT--TCTGA----AT------ATA------TA---------T-------ACAA-----------AGCATTG----GTGAACAATAATAGAAA-----AAGGA-AAAGAACGAAAGCA-CA---ACG--TTGAT-GAAATTCTTATCCTAGTTATCCTATAAATTACACATTTT-A-GACAAAAAGTAAAA-TAA-TTCTT-ACATCAACGTGCGATAATACATCAGTGATAATGGAATGAGAAAGGTATCATTACAATAGT-G-TT-TTATTGATTG--A--CATATATGATA--GTT-TCT-------TTGAAA-AA-C-G-TTAATTTGAAAGAAAACTAGCAATACATT-TAGG-----------GG----T-------T------GAA--T------GGAAAAACTGGCAACGCTATACTCT--------CATCAATATGGAATAGGTCCA-TGAGGATCGATTTGTGATCTTTATATT----AGTATACACTGCATCGAAGAAAATTCGAATATTTTTTTCTCAAAGTCAAATCTTTGTTAGTCAAAGAGAAGAACATTAAAGTTTGTATATTTGAAATCAGAAAGTGCGTTGAAAAAACACTTACCTCGCAACTTTA-TAA--TGATTATAGTGGTAAAGGGAGAATGTTTTCAAT-ATCATCTCACGATTATAGAGAGGAGATTCAGCTACAGTTTTTGA-A-AAAAATATATTTTTATTGAGAGAACTACAACTGTTACGTAGTCTCGTATGCTGTATTGTTTACCTTTTTCACAAAAATTAAAACATTTCCGCACTTTACTTAAGTTTAAATTTAACTTA-CTTTATTTTAAAGA---------TTTCAGACGATTTT-ATTTCATC------GTA------ATTCCAT-CTTTGTATAGATGAGGGTAGAAA
gi|10 : --CAGACGCGATA---TT-TCT-------TTAAAATAATC-A-TGAGTTTTAAA-------AAAAATG-AATGTTGG-----------AG----TGACAACGA------GGA--CGGAGGGGGAAAGCCG-ACTATGATATACCCTCAAATTCGCAACAACATATAATAGATCTACTTGAAA-t
gi|11 : actgtatgTTTTGTT--CCTCA----ATTGTTACATAATGTGTTA---------A-------A-AA-----------AACATTG----GTGGA----AATAGAAA-----AAAGAGTAAGTACAAAAGCA-TA---ATG--CTTAT-GAAATTCTTCTCCTAGTCGTGCTATACATTACACC-TTT-ATGGCAAAAAG
gi|12 : TATT--TCTCA----GT------ATA------TA------------------CAA-----------TACATTG----GTATACA-CAA-AAAAA-----ACGGA-TAAGAACGAACGCA-TA---AAG--CTTAT-TAAATTCTTCCCCTA
gi|13 : gattagtttaaacaaatcaTTGAAATATTTCGACACTTTACTTAGTTT----TTTTATTTAACTTGTTTTTAAAGATAAAAACAGTTTCAGACG-CTTT-A-TTCATCGGGAAGGTA------ATTTCATTCTCT-AATAGATAACGGAACAAAtgaataaattgctgagatattt
gi|14 : TACTTTATT--TCTCA----AT------ATA------TA---------ATGTGTCCACAA-----------A-CATTG----GTGAAAAACAATAGAAA-----AAGGGCTAAGAACGAATGCATTA---ATG--CTTCT-GAAATTCTTC
gi|15 : ttaaacatacatgA------TA-----------------ACAA-----------AAC--TG----GTGAACAATAATAGAAA-----AAGAA-TAAGAACGAAGGC--TA-----------AT-GAAATTCTTCT
gi|16 : tagtttaaacgtatttacccgtatattcatagtgACATCA----ATTACCATTAATAGAAA-----AAAGA-TAAGAACGAAAGCA-TA---CTG--CTCAT-GAAATTTTTCTTCag
gi|17 : gttttgtatataaattgtgttaacacc---------TTTCAGACG-CTTTTGTTTCATCGG------AAACGCCATTCCA-ATCTCAAAAAGATGACGGTAGAA
gi|2 : aacagTCA----AT------GTG------TA---------A-------ACCA-----------AACATTG----GTTAACAATAGCAGAAA-----ACAGA-TAAGAACAAAAGCA-TA---ATG--CTTAT-CAAAATCTTCTCCTAGTCGTACTATAAATTACACA-T-----GGC-AAAAGTAAAA-TAA-TTTAT-AAATAAATAT-TGAAAATAATTTGCTGACAATGAAAGGAGAAAGATATAAATACAATGGT-G-TT-CAACTGATTGTTA--CATATGTTATA--TTT-TTTACCCCTCTTCCCTC-C-C-G-TGAGTTTGAAAGAAAACTAGAAATA-AATGTTAGTGTGACACATTGGTATCT-------A------GGGATAGA-GGGGGTAAGCCG-ACAACGATATACTCT--------CAACAGAATGA-ATAGGTGT-------A-CGTTTTGTGTTCTTTATAC----AATTATGTACTGCATC---GAAAATTCGAATATTTGTCTT--AAAGTCAAAATGCTGTTCTCCAAAGAGAAGCGTATTTAGGTTGATATTGTCCAAGCCAGACAGTGCA-----------------TTGCGACTCTATTGTGGTGCTCTTTGCTT--------------TCTATATCACCAC---TCGATCAC--AGAGGAGACTCAGTCACA-
gi|3 : gatatATAAATATATGAAAATGAACTGATTAGAGTGAGAATAGCAAGTTCTGATTACAAAAGTGG-TTATTACTGTTTT--ATACATACGCAATA--TTC-TTT-------TTAAAACAA-CCA-TGAATTTTTAAGAAAACTATGAATA-AATATGGC-----------GG----T-------AATACATGGA--TGG-AGGGGAAAAGCGTACTACAATATACAAT--------CACCAATATGTGATAGTTCTGCTTAAAA-CGTTTTGTGTT---TGTGTTTAAAAGTGTGTACTGAATC---AAAAATTTGAATATT-GGCCCAAAAAATAAAAATTTTATTCTCCAAATAGAGG-GAACTAAGGTTAATATTTTTTAAGCTAGACAGTGCTTTG-AGAAGCATTTGCCTTGCAACTCCA-TGT--TTATTTTTGTTTCAATGGAAAAATG
gi|4 : acattacttaaacaaaCA----AT------GTG------TA---------A-------ACAA-----------AATATTG----GTAAACAATAATAAAAA-----AGGGA-TAAGAACGACAG-----------------T-G-----CTTCTCCTAGTCGTACTA-AAACTAAAAA-TT-----ACACATGGTAAGA-TTT-TTTTTTACAAAAATATGTGAAAACAAATTAGTGATAATGAAAAGAGAATGATGTGATTG---------------------TA--A--CATACGCGATAGGTTTATTT-------TTAAAATAA-T-GATGAATTTGAAAGAAAACTTAAAATA-ATTGTTGG-----------GG----T-------a
gi|5 : ttatttcttgatatatatataTATTTCATT--TCTTACTCTAT------ATA------TACAATGTATTC-------ACGA-----------AATATTG----GTGATTGACAATAACAA-----AGGGA-CAAAAACGAAGGCAGTATACATGTACTTATGGAAATAGT--TTCTGGTCATACTATAACTTACACA-TTA-T-GGCA-------------------------AAATATGGGAAAATAAATTAATGATGATGAAAATACAAATATCTGATTTCAAGGGTGGCTT-TTACTAATTG--gacagag
gi|6 : aaacaTGAACAATAAAAAATA-----AAGGA-TAAGAACAAAAACA-TA---ATG--GCAAT-GAAATTCTTCTCCTATTCTTACTATAGATTATATA-TTTAA-GACAAAAAGT--AC-TAA-TTTAT-ACATTTATAAGTGAAAATAAATTATTGACATTGAAAATAGAATATCATGATTGCAAAAGTGT-TT-Tgtac
gi|7 : ATCACACGAGCAC--AAAGGAGACTCAGCC----TTTTTAATATATATATATATTTTGATTAAGAGATCTACAACTGGTACGGAGTCTCACAGACTGGCTTGTATGCTTCTTTCACCAAAGTTAAACTACCTTGGCACTTTACTTAGGTTCAGATTTAA-----CTTGCTTTTAAAGA----------TGCAGACG--TTT-ATgagctcattctta
gi|8 : TAAT-TTAGTT-TTTTATTCTTCTGA----AT------ATG------TA---------T-------ACAATGTGTTAACAAAACACTGCATGATGAACAATAATAGAAACTTGAAAGGA-TAAGA----------------------TAT-GAAATTCGTTTCCTGGACTTACACTAAATTACACA-TTT---GTT-----GTAAAACTAATTTTATGACACAAATATGTAAAAA
gi|9 : actttcTTAGT-T-AATTCTATCATT--TAT-------T------GTG------AA---------A-------ACAA-----------AACATTG----GTAAACA-TAATAGAAA-----AGGAA-TAAGAACGAAAGCA-TA---ATG--CTTTT-GAAGTTATTTTCCT
Alignments
lowQualScore : 111 111111 444444444444444444444444444444444444 3333 11111 11 11111 11 2222222 11111111 8888888888888888888888888888 1 111 1 33333333 1 111111111 22222 222 11 11 2222 2222222222222 1 11 44444444444 1 333 11 1111 222 111 22222 4444444444 11 1 6666666666
lowQualScore : 777 5 66 4 111111 000000000000000000000000000000000000 7777 3 88888 6 6 6666 666 0 3 1 0000 0 99 1 3 33333 3 6 0 1 1 44 1 3 11 6 3 1 33333 11 8 6666666 0 66666666 777 1 9999999999999999999999999999 0 000 1 0 1 1 66666666 1 1 0 0 999999999 6 66666 7 333 88 7 88 3333 1 1 3 7777777777777 3 0 3 88 11111111111 22 5 222 88 8888 222 1 1 1 1 1 1 1 22 1 1 444 22222 1 3333333333 66 0 3 1111111111 11 3
lowQualScore : ... . .. . ...... .................................... .... . ..... . . .... ... . . . .... . .. . . ..... . . . . . .. . . .. . . . ..... .. . ....... . ........ ... . ............................ . ... . . . . ........ . . . . ......... . ..... . ... .. . .. .... . . . ............. . . . .. ........... .. . ... .. .... ... . . . . . . . .. . . ... ..... . .......... .. . . .......... .. .
lowQualScore : 777 6 99 1 555555 999999999999999999999999999999999999 7777 3 33333 7 7 9999 333 4 3 7 9999 4 99 6 2 77777 7 7 3 0 0 33 8 3 88 7 2 0 00000 00 0 0000000 8 66666666 888 0 5555555555555555555555555555 0 555 0 0 0 2 22222222 0 2 8 2 000000000 7 77777 3 333 33 3 33 0000 0 0 7 0000000000000 7 7 3 33 77777777777 00 0 333 33 0000 000 0 0 0 0 0 0 0 00 0 0 777 33333 0 2222222222 55 0 2 7777777777 77 7
consensus : TTAAT-T-AATTATTTTATT--TCTCA------AT------ATG------TA-----------A-------ACAAAACATTG----GTGAACAATAATAGAAA-----AAGGA-TAAGAACGAAAGCA-TA---ATG--CTTAT-GAAATTCTTCTCCTAGTCGTACTATAAATTACACATTT-A-GGCAAAAAGTAAAA-TAA-TTTAT-ACATAAATATGTGAAAATAAATTANTGATAATGAAAANAGAAAGNTATGATTACAANAGTGG-TT-TTACTGATTG--A--CATACGCGATA--TTT-TTT-------TTAAAACAA-C-G-TGAATTTGAAAGAAAACTAGAAATAAATGTTGG-----------GGT-------A-C--G-GGAT-GG-GGGGGAAAGCCG-ACNACGATATACTCT--------CANCAATATGTAATAGGTCTACTTAAAA-CGTTTTGTGTTCTTTATATT---AAGTATGTACTGCATCGAA---AATTCGAATATTTGT--CTCAAAG--TCAAAATTTTGTTCTCCAAAGAGAAG-GA-ATTAAGGTTNATATTTTTNAAGCCAGACAGTGCGTTGAGAAG-CACTTGCCTCGCGACTCTA-TGT--TGATTTTTGTT-T-AA-GGGAGAATGTTCTNNATCACCATC-CACGATCACAGAG--GAGACTCAGCCACA-TTTTTGATATANANATATATTTTNATTGAGAGANCTACAACTGNTACGNAGTCTCGCANGCTGNNTTGTNTGCCTCTTTCACNAAAGTTAAAATATTTCGGCACTTTACTTAGGTTCAGATTTAACTT-ACTTGNTTTTAAAGA---------TTTCAGACG-CTTT-ATTTCATCG----G----GTAATTCCATTCTCGAATAGATGACGGTAGAAA
Reference ( family-1443 ) : TTAAT-T-AATTATTTTATT--TCTCA------AT------ATA------TA-----------A-------ACAAAACATTG----GTGAACAATAATAGAAA-----AAGGA-TAAGAACGAAAGCA-TA---ATG--CTTAT-GAAATTCTTCTCCTAGTCGTACTATAAATTACACATTT-A-GGCAAAAAGTAAAA-TAA-TTTAT-ACATAAATATGTGAAAATAAATTANTGATAATGAAAANAGAAAGNTATGATTACAANAGTGG-TT-TTACTGATTG--A--CATACGCGATA--TTT-TTT-------TTAAAACAA-C-G-TGAATTTGAAAGAAAACTAGAAATAAATGTTGG-----------GGT-------A------GGAT-GG-GGGGGAAAGNCG-ACNACGATATACTCT--------CANCAATATGNAATAGGTCTACTTAAAA-CGTTTTGTGTTCTTTATATT---AAGTATGTACTGCATCGAA---AATTCGAATATTTGT--CTCAAAG--TCAAAATTTTGTTCTCCAAAGAGAAG-GN-ATTAAGGTTNATATTTTTNAAGCCAGACAGTGCGTTGAGAAG-CACTTGCCTCGCGACTCTA-TGT--TGATTTTTGTT-TCAA-GGGAGAATGTTCTNNATCACCATC-CACGATCACAGAG--GAGACTCAGCCACA-TTTTTGATATANANATATATTTTNATTGAGAGANCTACAACTGNTACGNAGTCTCGCANGCTGNNTTGTNTGCCTCTTTCACNAAAGTTAAAATATTTCGGCACTTTACTTAGGTTCAGATTTAACTT-ACTTGNTTTTAAAGA---------TTTCAGACG-CTTT-ATTTCATCG----G----GTAATTCCATCTTCGAATAGATGACGGTAGAAA
gi|1 : TTAATAT-AATTATTTTATT--TCTGA------AT------ATA------TA-----------T-------ACAAAGCATTG----GTGAACAATAATAGAAA-----AAGGA-AAAGAACGAAAGCA-CA---ACG--TTGAT-GAAATTCTTATCCTAGTTATCCTATAAATTACACATTTTA-GACAAAAAGTAAAA-TAA-TTCTT-ACATCAACGTGCGATAATACATCAGTGATAATGGAATGAGAAAGGTATCATTACAATAGTG--TT-TTATTGATTG--A--CATATATGATA--GTT-TCT-------TTGAAA-AA-C-G-TTAATTTGAAAGAAAACTAGCAATACATTTAGG-----------GGT-------T------GAAT-GG-A----AAAACTG-GCAACGCTATACTCT--------CATCAATATGGAATAGGTCCA-TGAGGATCGATTTGTGATCTTTATATT---A-GTATACACTGCATCGAAGAAAATTCGAATATTTTTTTCTCAAAG--TCAAATCTTTGTTAGTCAAAGAGAAG-AACATTAAAGTTTGTATATTTGAAATCAGAAAGTGCGTTGAAAAAACACTTACCTCGCAACTTTA-TAA--TGATTATAGTGGTAAA-GGGAGAATGTTTTCAAT-ATCATCTCACGATTATAGAGAGGAGATTCAGCTACAGTTTTTGA-A-AAAAATATATTTTTATTGAGAGAACTACAACTGTTACGTAGTCTCGTATGCTGTATTGTTTACCTTTTTCACAAAAATTAAAACATTTCCGCACTTTACTTAAGTTTAAATTTAACTT-ACTTTATTTTAAAGA---------TTTCAGACGATTTT-ATTTCATC----------GTAATTCCATCTTTGTATAGATGAGGGTAGAAA
gi|10 : --CAGACGCGATA--TTT-CTT-------T-AAAATAATC-A-TGAGTTTTAAAAAAAA-------TGAATGTTGG-----------AGTGACAACGA------GGAC-GGAGGGGGAAAGCCG-ACTATGATATACCCTCAAATTCGCAACAACATATAATAGATCTACTTGAAA-t
gi|11 : actgtatgTTTTGTT--CCTCA------ATTGTTACATAATGTGTTA-----------A-------A-AAAACATTG----GTGGA----AATAGAAA-----AAAGAGTAAGTACAAAAGCA-TA---ATG--CTTAT-GAAATTCTTCTCCTAGTCGTGCTATACATTACACCTTT-ATGGCAAAAAG
gi|12 : TATT--TCTCA------GT------ATA------TA--------------------CAATACATTG----GTATACA-CAA-AAAAA-----ACGGA-TAAGAACGAACGCA-TA---AAG--CTTAT-TAAATTCTTCCCCTA
gi|13 : gattagtttaaacaaatcaTTGAAATATTTCGACACTTTACTTAGTTT----TTTTATTTAACTTGTTTTTAAAGATAAAAACAGTTTCAGACG-CTTT-A-TTCATCGGGAAG----GTAATTTCATTCTCTAATAGATAACGGAACAAAtgaataaattgctgagatattt
gi|14 : TACTTTATT--TCTCA------AT------ATA------TA-----------ATGTGTCCACAAA-CATTG----GTGAAAAACAATAGAAA-----AAGGGCTAAGAACGAATGCATTA---ATG--CTTCT-GAAATTCTTC
gi|15 : ttaaacatacatg-----------A-------ACAAAAC--TG----GTGAACAATAATAGAAA-----AAGAA-TAAGAACGAAGGC--TA-----------AT-GAAATTCTTCT
gi|16 : tagtttaaacgtatttacccgtatattcatagtgatTTTTGTA--TATAA------ATT-----GTG------TT-----------A-------ACACCACATCA----ATTACCATTAATAGAAA-----AAAGA-TAAGAACGAAAGCA-TA---CTG--CTCAT-GAAATTTTTCTTCag
gi|17 : g---------TTTCAGACG-CTTTTGTTTCATCG----GAAACGCCATTCCAATCTCAAAAAGATGACGGTAGAA
gi|2 : aacagTCA------AT------GTG------TA-----------A-------ACCAAACATTG----GTTAACAATAGCAGAAA-----ACAGA-TAAGAACAAAAGCA-TA---ATG--CTTAT-CAAAATCTTCTCCTAGTCGTACTATAAATTACACAT-----GGC-AAAAGTAAAA-TAA-TTTAT-AAATAAATAT-TGAAAATAATTTGCTGACAATGAAAGGAGAAAGATATAAATACAATGGT-G-TT-CAACTGATTGTTA--CATATGTTATA--TTT-TTTACCCCTCTTCCCTC-C-C-G-TGAGTTTGAAAGAAAACTAGAAATAAATGTTAGTGTGACACATTGGT-------ATCTAG-GGATAGA-GGGGGTAAGCCG-ACAACGATATACTCT--------CAACAGAATG-AATAGGTGT-------A-CGTTTTGTGTTCTTTATA-C---AATTATGTACTGCATCGAA---AATTCGAATATTTGT--CTTAAAG--TCAAAATGCTGTTCTCCAAAGAGAAGCGT-ATTTAGGTTGATATTGTCCAAGCCAGACAGTGCATT-----------------GCGACTCTATTGTGGTGCTCTTTGCT---------------TTCTATATCACCA---CTCGATCACAGAG--GAGACTCAGTCACA-
gi|3 : gatatATAAATATATGAAAATGAACTGATTAGAGTGAGAATAGCAAGTTCTGATTACAAAAGTGG-TTATTACTGTTTT--ATACATACGCAATA--TTC-TTT-------TTAAAACAA-CCA-TGAATTTTTAAGAAAACTATGAATAAATATGGC-----------GGT-------AATACATGGAT-GG-AGGGGAAAAGCGTACTACAATATACAAT--------CACCAATATGTGATAGTTCTGCTTAAAA-CGTTTTGTGTT---TGTGTTTAAAAGTGTGTACTGAATCAAA---AATTTGAATATTGGC--C-CAAAAAATAAAAATTTTATTCTCCAAATAGAGG-GA-ACTAAGGTTAATATTTTTTAAGCTAGACAGTGCTTTGAGAAG-CATTTGCCTTGCAACTCCA-TGT--TTATTTTTGTT-TCAATGGAAAAATG
gi|4 : acattacttaaacaaaCA------AT------GTG------TA-----------A-------ACAAAATATTG----GTAAACAATAATAAAAA-----AGGGA-TAAGAACGACAG---------TG--------------CTTCTCCTAGTCGTACTA-AAACTAAAAATT-----ACACATGGTAAGATTTT-TTTTT-ACAAAAATATGTGAAAACAAATTAGTGATAATGAAAAGAGA-----ATGAT-------GTGA-TT-GTA---------A--CATACGCGATAGGTTTATTT-------TTAAAATAA-T-GATGAATTTGAAAGAAAACTTAAAATAATTGTTGG-----------GGT-------a
gi|5 : ttatttcttgatatatatataTATTTCATT--TCTTACTCTATAT------ATA------CA-----------ATGTATTCACGAAATATTG----GTGATTGACAATAACAA-----AGGGA-CAAAAACGAAGGCAGTATACATGTACTTATGGAAATAGT--TTCTGGTCATACTATAACTTACACATTA-T-GGCA-------------------------AAATATGGGAAAATAAATTAATGATGATGAAAATACAAATATCTGATTTCAAGGGTGGCTT-TTACTAATTG--gacagag
gi|6 : aaacaTGAACAATAAAAAATA-----AAGGA-TAAGAACAAAAACA-TA---ATG--GCAAT-GAAATTCTTCTCCTATTCTTACTATAGATTATATATTTAA-GACAAAAAGT--AC-TAA-TTTAT-ACATTTATAAGTGAAAATAAATTATTGACATTGAAAATAGAATATCATGATTGCAAAAGTGT-TT-Tgtac
gi|7 : ATCACACGAGCACAAAG--GAGACTCAGCC----TTTTTAATATATATATATATTTTGATTAAGAGATCTACAACTGGTACGGAGTCTCACAGACTGGCTTGTATGCTTCTTTCACCAAAGTTAAACTACCTTGGCACTTTACTTAGGTTCAGATTTA-----ACTTGCTTTTAAAGA----------TGCAGACG--TTT-ATgagctcattctta
gi|8 : TAAT-TTAGTT-TTTTATTCTTCTGA------AT------ATG------TATACAATGTGTTA-------ACAAAACACTGCATGATGAACAATAATAGAAACTTGAAAGGA-TAAGA----------------------TAT-GAAATTCGTTTCCTGGACTTACACTAAATTACACATTT---GTT-----GTAAAACTAATTTTATGACACAAATATGTAAAAA
gi|9 : actttcTTAGT-T-AATTCTATCATT--TAT---------T------GTG------AA-----------A-------ACAAAACATTG----GTAAACA-TAATAGAAA-----AGGAA-TAAGAACGAAAGCA-TA---ATG--CTTTT-GAAGTTATTTTCCT
Alignments
lowQualScore : 111 111111 222222222 4444444444444444444 3333 11111 11 11111 111 2222222 11111111 8888888888888888888888888888 1 1 1 33333333 111111111 22222 222 11 11 2222 2222222222222 1 11 11 4444444444 1 333 11 1111 222 111 22222 4444444444 11 1 6666666666
lowQualScore : 777 5 66 4 111111 000000000 3333333333333333333 7777 3 88888 6 6 6666 666 0 3 1 0000 0 99 1 3 33333 3 6 0 1 1 44 1 3 11 6 3 1 33333 666 8 6666666 66666666 1 1 8888888888888888888888888888 0 0 0 1 1 66666666 1 1 9 0 999999999 6 66666 7 333 88 7 88 1111 1 1 3 7777777777777 3 0 3 88 88 4 3333333333 22 5 222 88 8888 222 1 1 1 1 1 1 1 22 1 1 444 22222 1 3333333333 66 0 3 1111111111 3
lowQualScore : ... . .. . ...... ......... ................... .... . ..... . . .... ... . . . .... . .. . . ..... . . . . . .. . . .. . . . ..... ... . ....... ........ . . ............................ . . . . . ........ . . . . ......... . ..... . ... .. . .. .... . . . ............. . . . .. .. . .......... .. . ... .. .... ... . . . . . . . .. . . ... ..... . .......... .. . . .......... .
lowQualScore : 777 6 99 1 555555 000000000 7777777777777777777 7777 3 33333 7 7 9999 333 4 3 7 9999 4 99 6 2 77777 7 7 3 0 0 33 8 3 88 7 2 0 00000 666 0 0000000 66666666 4 0 0000000000000000000000000000 0 0 0 0 2 22222222 0 2 2 2 000000000 7 77777 3 333 33 3 33 7777 0 0 7 0000000000000 7 7 3 33 33 0 7777777777 00 0 333 33 0000 000 0 0 0 0 0 0 0 00 0 0 777 33333 0 2222222222 55 0 2 7777777777 7
consensus : TTAAT-T-AATTATTTTATT--TCTCA------AT---------ATGTA-----------A-------ACAAAACATTG----GTGAACAATAATAGAAA-----AAGGA-TAAGAACGAAAGCA-TA---ATG--CTTAT-GAAATTCTTCTCCTAGTCGTACTATAAATTACACATTT-A-GGCAAAAAGTAAAA-TAA-TTTAT-ACATAAATATGTGAAAATAAATTANTGATAATGAAAANAGAAAGNTATGATTACAANAGTGG-TT-TTACTGATTG--A--CATACGCGATA--TTT-TTT-------TTAAAACAA-C-G-TGAATTTGAAAGAAAACTAGAAATAAATGTTGG-----------GGT----A---C---G-GGAT-GG-GGGGGAAAGCCG-ACNACGATATACTCT--------CANCAATATGTAATAGGTCTACTTAAAA-CGTTTTGTGTTCTTTATATT---AAGTATGTACTGCATCGAA---AATTCGAATATTTGT--CTCAAAG--TCAAAATTTTGTTCTCCAAAGAGAAG-GA-ATTAAGGTTNATATTTTTNAAGCCAGACAGTGCGTTGAGAAG-CACTTGCCTCGCGACTCTA-TGT--TGATTTT--TGNT--AA-GGGAGAATGTTCTNNATCACCATC-CACGATCACAGAG--GAGACTCAGCCACA-TTTTTGATATANANATATATTTTNATTGAGAGANCTACAACTGNTACGNAGTCTCGCANGCTGNNTTGTNTGCCTCTTTCACNAAAGTTAAAATATTTCGGCACTTTACTTAGGTTCAGATTTAACTT-ACTTGNTTTTAAAGA---------TTTCAGACG-CTTT-ATTTCATCG----G----GTAATTCCATTCTCGAATAGATGACGGTAGAAA
Reference ( family-1443 ) : TTAAT-T-AATTATTTTATT--TCTCA------AT---------ATGTA-----------A-------ACAAAACATTG----GTGAACAATAATAGAAA-----AAGGA-TAAGAACGAAAGCA-TA---ATG--CTTAT-GAAATTCTTCTCCTAGTCGTACTATAAATTACACATTT-A-GGCAAAAAGTAAAA-TAA-TTTAT-ACATAAATATGTGAAAATAAATTANTGATAATGAAAANAGAAAGNTATGATTACAANAGTGG-TT-TTACTGATTG--A--CATACGCGATA--TTT-TTT-------TTAAAACAA-C-G-TGAATTTGAAAGAAAACTAGAAATAAATGTTGG-----------GGT----A---C---G-GGAT-GG-GGGGGAAAGCCG-ACNACGATATACTCT--------CANCAATATGTAATAGGTCTACTTAAAA-CGTTTTGTGTTCTTTATATT---AAGTATGTACTGCATCGAA---AATTCGAATATTTGT--CTCAAAG--TCAAAATTTTGTTCTCCAAAGAGAAG-GA-ATTAAGGTTNATATTTTTNAAGCCAGACAGTGCGTTGAGAAG-CACTTGCCTCGCGACTCTA-TGT--TGATTTT--TGTTT-AA-GGGAGAATGTTCTNNATCACCATC-CACGATCACAGAG--GAGACTCAGCCACA-TTTTTGATATANANATATATTTTNATTGAGAGANCTACAACTGNTACGNAGTCTCGCANGCTGNNTTGTNTGCCTCTTTCACNAAAGTTAAAATATTTCGGCACTTTACTTAGGTTCAGATTTAACTT-ACTTGNTTTTAAAGA---------TTTCAGACG-CTTT-ATTTCATCG----G----GTAATTCCATTCTCGAATAGATGACGGTAGAAA
gi|1 : TTAATAT-AATTATTTTATT--TCTGA------AT---------ATATA-----------T-------ACAAAGCATTG----GTGAACAATAATAGAAA-----AAGGA-AAAGAACGAAAGCA-CA---ACG--TTGAT-GAAATTCTTATCCTAGTTATCCTATAAATTACACATTTTA-GACAAAAAGTAAAA-TAA-TTCTT-ACATCAACGTGCGATAATACATCAGTGATAATGGAATGAGAAAGGTATCATTACAATAGTG--TT-TTATTGATTG--A--CATATATGATA--GTT-TCT-------TTGAAA-AA-C-G-TTAATTTGAAAGAAAACTAGCAATACATTTAGG-----------GGT-----------------T-GA-ATGGAAAAACTG-GCAACGCTATACTCT--------CATCAATATGGAATAGGTCCA-TGAGGATCGATTTGTGATCTTTATATT---A-GTATACACTGCATCGAAGAAAATTCGAATATTTTTTTCTCAAAG--TCAAATCTTTGTTAGTCAAAGAGAAG-AACATTAAAGTTTGTATATTTGAAATCAGAAAGTGCGTTGAAAAAACACTTACCTCGCAACTTTA-TAA--TGATTATAGTGGTA-AA-GGGAGAATGTTTTCAAT-ATCATCTCACGATTATAGAGAGGAGATTCAGCTACAGTTTTTGA-A-AAAAATATATTTTTATTGAGAGAACTACAACTGTTACGTAGTCTCGTATGCTGTATTGTTTACCTTTTTCACAAAAATTAAAACATTTCCGCACTTTACTTAAGTTTAAATTTAACTT-ACTTTATTTTAAAGA---------TTTCAGACGATTTT-ATTTCATC----------GTAATTCCATCTTTGTATAGATGAGGGTAGAAA
gi|10 : --CAGACGCGATA---TT-TCT-------TTAAAATAATC-A-TGAGTTTTAAA-------AAAAATGAATGTTGG-----------AGTGACAA---C---GAGGAC-GGAGGGGGAAAGCCG-ACTATGATATACCCTCAAATTCGCAACAACATATAATAGATCTACTTGAAA-t
gi|11 : actgtatgTTTTGTT--CCTCA------ATTGTTACATAATGTGTT---------A-------AAAAAACATTG----GTGGA----AATAGAAA-----AAAGAGTAAGTACAAAAGCA-TA---ATG--CTTAT-GAAATTCTTCTCCTAGTCGTGCTATACATTACACCTTT-ATGGCAAAAAG
gi|12 : TATT--TCTCA------GT---------ATATA--------------------CAATACATTG----GTATACA-CAA-AAAAA-----ACGGA-TAAGAACGAACGCA-TA---AAG--CTTAT-TAAATTCTTCCCCTA
gi|13 : gattagtttaaacaaatcaTTGAAATATTTCGACACTTTACTTAGTTT----TTTTATTTAACTTGTTTTTAAAGATAAAAACAGTTTCAGACG-CTTT-A-TTCATCGGGAAG----GTAATTTCATTCTCTAATAGATAACGGAACAAAtgaataaattgctgagatattt
gi|14 : TACTTTATT--TCTCA------AT---------ATATA-----------ATGTGTCCACAAA-CATTG----GTGAAAAACAATAGAAA-----AAGGGCTAAGAACGAATGCATTA---ATG--CTTCT-GAAATTCTTC
gi|15 : ttaaacatacatg-----------A-------ACAAAAC--TG----GTGAACAATAATAGAAA-----AAGAA-TAAGAACGAAGGC--TA-----------AT-GAAATTCTTCT
gi|16 : tagtttaaacgtatttacccgtatattcatagtgatTTTTGTA--TATAA------ATT--------GTGTT-----------A-------ACACCACATCA----ATTACCATTAATAGAAA-----AAAGA-TAAGAACGAAAGCA-TA---CTG--CTCAT-GAAATTTTTCTTCag
gi|17 : g---------TTTCAGACG-CTTTTGTTTCATCG----GAAACGCCATTCCAATCTCAAAAAGATGACGGTAGAA
gi|2 : aacagTCA------AT---------GTGTA-----------A-------ACCAAACATTG----GTTAACAATAGCAGAAA-----ACAGA-TAAGAACAAAAGCA-TA---ATG--CTTAT-CAAAATCTTCTCCTAGTCGTACTATAAATTACACAT-----GGC-AAAAGTAAAA-TAA-TTTAT-AAATAAATAT-TGAAAATAATTTGCTGACAATGAAAGGAGAAAGATATAAATACAATGGT-G-TT-CAACTGATTGTTA--CATATGTTATA--TTT-TTTACCCCTCTTCCCTC-C-C-G-TGAGTTTGAAAGAAAACTAGAAATAAATGTTAGTGTGACACATTGGT----A---TCTAG-GGATAGA-GGGGGTAAGCCG-ACAACGATATACTCT--------CAACAGAATG-AATAGGTGT-------A-CGTTTTGTGTTCTTTATA-C---AATTATGTACTGCATCGAA---AATTCGAATATTTGT--CTTAAAG--TCAAAATGCTGTTCTCCAAAGAGAAGCGT-ATTTAGGTTGATATTGTCCAAGCCAGACAGTGCATT-----------------GCGACTCTATTGTGGTGCTCTT--TGCT--------------TTCTATATCACCA---CTCGATCACAGAG--GAGACTCAGTCACA-
gi|3 : gatatATAAATATATGAAAATGAACTGATTAGAGTGAGAATAGCAAGTTCTGATTACAAAAGTGG-TTATTACTGTTTT--ATACATACGCAATA--TTC-TTT-------TTAAAACAA-CCA-TGAATTTTTAAGAAAACTATGAATAAATATGGC-----------GGT----AATAC---ATGGAT-GG-AGGGGAAAAGCGTACTACAATATACAAT--------CACCAATATGTGATAGTTCTGCTTAAAA-CGTTTTGTGTT---TGTGTTTAAAAGTGTGTACTGAATCAAA---AATTTGAATATTGGC--C-CAAAAAATAAAAATTTTATTCTCCAAATAGAGG-GA-ACTAAGGTTAATATTTTTTAAGCTAGACAGTGCTTTGAGAAG-CATTTGCCTTGCAACTCCA-TGT--TTATTTT--TGTTTCAATGGAAAAATG
gi|4 : acattacttaaacaaaCA------AT---------GTGTA-----------A-------ACAAAATATTG----GTAAACAATAATAAAAA-----AGGGA-TAAGAACGACAG---------TG--------------CTTCTCCTAGTCGTACTA-AAACTAAAAATT-----ACACATGGTAAGATTTT-TTTTT-ACAAAAATATGTGAAAACAAATTAGTGATAATGAAAAGAGA-----ATGAT-------GTGA-TT-GTA---------A--CATACGCGATAGGTTTATTT-------TTAAAATAA-T-GATGAATTTGAAAGAAAACTTAAAATAATTGTTGG-----------GGT----a
gi|5 : ttatttcttgatatatatataTATTTCATT--TCTTACTCTATAT---------ATACA-----------ATGTATTCACGAAATATTG----GTGATTGACAATAACAA-----AGGGA-CAAAAACGAAGGCAGTATACATGTACTTATGGAAATAGT--TTCTGGTCATACTATAACTTACACATTA-T-GGCA-------------------------AAATATGGGAAAATAAATTAATGATGATGAAAATACAAATATCTGATTTCAAGGGTGGCTT-TTACTAATTG--gacagag
gi|6 : aaacaTGAACAATAAAAAATA-----AAGGA-TAAGAACAAAAACA-TA---ATG--GCAAT-GAAATTCTTCTCCTATTCTTACTATAGATTATATATTTAA-GACAAAAAGT--AC-TAA-TTTAT-ACATTTATAAGTGAAAATAAATTATTGACATTGAAAATAGAATATCATGATTGCAAAAGTGT-TT-Tgtac
gi|7 : ATCACACGAGCACAAAG--GAGACTCAGCC----TTTTTAATATATATATATATTTTGATTAAGAGATCTACAACTGGTACGGAGTCTCACAGACTGGCTTGTATGCTTCTTTCACCAAAGTTAAACTACCTTGGCACTTTACTTAGGTTCAGATTTA-----ACTTGCTTTTAAAGA----------TGCAGACG--TTT-ATgagctcattctta
gi|8 : TAAT-TTAGTT-TTTTATTCTTCTGA------AT---------ATGTATACAATGTGTTA-------ACAAAACACTGCATGATGAACAATAATAGAAACTTGAAAGGA-TAAGA----------------------TAT-GAAATTCGTTTCCTGGACTTACACTAAATTACACATTT---GTT-----GTAAAACTAATTTTATGACACAAATATGTAAAAA
gi|9 : actttcTTAGT-T-AATTCTATCATT--TAT---------T---------GTGAA-----------A-------ACAAAACATTG----GTAAACA-TAATAGAAA-----AGGAA-TAAGAACGAAAGCA-TA---ATG--CTTTT-GAAGTTATTTTCCT
Alignments
lowQualScore : 111 111111 222222222 4444444444444444444 3333 11111 11 11111 11 2222222 11111111 8888888888888888888888888888 1 1 1 333333333 111111111 22222 222 11 11 2222 2222222222222 1 11 11 5555555555 1 333 11 1111 222 111 22222 4444444444 11 1 6666666666
lowQualScore : 777 5 66 4 111111 000000000 3333333333333333333 7777 3 88888 6 6 6666 666 0 3 1 0000 0 99 1 3 33333 3 6 0 1 1 44 1 3 11 6 3 1 33333 11 8 6666666 0 66666666 777 1 8888888888888888888888888888 0 0 0 1 1 777777777 1 9 0 999999999 6 66666 7 333 88 7 88 1111 1 1 3 7777777777777 3 0 3 88 88 1 4444444444 22 5 222 88 8888 222 1 1 1 1 1 1 1 22 1 1 444 22222 1 3333333333 66 0 3 1111111111 3
lowQualScore : ... . .. . ...... ......... ................... .... . ..... . . .... ... . . . .... . .. . . ..... . . . . . .. . . .. . . . ..... .. . ....... . ........ ... . ............................ . . . . . ......... . . . ......... . ..... . ... .. . .. .... . . . ............. . . . .. .. . .......... .. . ... .. .... ... . . . . . . . .. . . ... ..... . .......... .. . . .......... .
lowQualScore : 777 6 99 1 555555 000000000 7777777777777777777 7777 3 33333 7 7 9999 333 4 3 7 9999 4 99 6 2 77777 7 7 3 0 0 33 8 3 88 7 2 0 00000 00 0 0000000 8 66666666 888 0 0000000000000000000000000000 0 0 0 0 2 222222222 2 2 2 000000000 7 77777 3 333 33 3 33 7777 0 0 7 0000000000000 7 7 3 33 33 0 3333333333 00 0 333 33 0000 000 0 0 0 0 0 0 0 00 0 0 777 33333 0 2222222222 55 0 2 7777777777 7
consensus : TTAAT-T-AATTATTTTATT--TCTCA------AT---------ATGTA-----------A-------ACAAAACATTG----GTGAACAATAATAGAAA-----AAGGA-TAAGAACGAAAGCA-TA---ATG--CTTAT-GAAATTCTTCTCCTAGTCGTACTATAAATTACACATTT-A-GGCAAAAAGTAAAA-TAA-TTTAT-ACATAAATATGTGAAAATAAATTANTGATAATGAAAANAGAAAGNTATGATTACAANAGTGG-TT-TTACTGATTG--A--CATACGCGATA--TTT-TTT-------TTAAAACAA-C-G-TGAATTTGAAAGAAAACTAGAAATAAATGTTGG-----------GGT----A---C---G-GGAT-GG-GGGGGAAAGCCG-ACNACGATATACTCTCAN--------CAATATGTAATAGGTCTACTTAAAA-CGTTTTGTGTTCTTTATATT---AAGTATGTACTGCATCGAA---AATTCGAATATTTGT--CTCAAAG--TCAAAATTTTGTTCTCCAAAGAGAAG-GA-ATTAAGGTTNATATTTTTNAAGCCAGACAGTGCGTTGAGAAG-CACTTGCCTCGCGACTCTA-TGT--TGATTTT--TGNT--AA-GGGAGAATGTTCTNNATCACCATC-CACGATCACAGAG--GAGACTCAGCCACA-TTTTTGATATANANATATATTTTNATTGAGAGANCTACAACTGNTACGNAGTCTCGCANGCTGNNTTGTNTGCCTCTTTCACNAAAGTTAAAATATTTCGGCACTTTACTTAGGTTCAGATTTAACTT-ACTTGNTTTTAAAGA---------TTTCAGACG-CTTT-ATTTCATCG----G----GTAATTCCATTCTCGAATAGATGACGGTAGAAA
Reference ( family-1443 ) : TTAAT-T-AATTATTTTATT--TCTCA------AT---------ATGTA-----------A-------ACAAAACATTG----GTGAACAATAATAGAAA-----AAGGA-TAAGAACGAAAGCA-TA---ATG--CTTAT-GAAATTCTTCTCCTAGTCGTACTATAAATTACACATTT-A-GGCAAAAAGTAAAA-TAA-TTTAT-ACATAAATATGTGAAAATAAATTANTGATAATGAAAANAGAAAGNTATGATTACAANAGTGG-TT-TTACTGATTG--A--CATACGCGATA--TTT-TTT-------TTAAAACAA-C-G-TGAATTTGAAAGAAAACTAGAAATAAATGTTGG-----------GGT----A---C---G-GGAT-GG-GGGGGAAAGCCG-ACNACGATATACTCTCAN--------CAATATGTAATAGGTCTACTTAAAA-CGTTTTGTGTTCTTTATATT---AAGTATGTACTGCATCGAA---AATTCGAATATTTGT--CTCAAAG--TCAAAATTTTGTTCTCCAAAGAGAAG-GA-ATTAAGGTTNATATTTTTNAAGCCAGACAGTGCGTTGAGAAG-CACTTGCCTCGCGACTCTA-TGT--TGATTTT--TGNT--AA-GGGAGAATGTTCTNNATCACCATC-CACGATCACAGAG--GAGACTCAGCCACA-TTTTTGATATANANATATATTTTNATTGAGAGANCTACAACTGNTACGNAGTCTCGCANGCTGNNTTGTNTGCCTCTTTCACNAAAGTTAAAATATTTCGGCACTTTACTTAGGTTCAGATTTAACTT-ACTTGNTTTTAAAGA---------TTTCAGACG-CTTT-ATTTCATCG----G----GTAATTCCATTCTCGAATAGATGACGGTAGAAA
gi|1 : TTAATAT-AATTATTTTATT--TCTGA------AT---------ATATA-----------T-------ACAAAGCATTG----GTGAACAATAATAGAAA-----AAGGA-AAAGAACGAAAGCA-CA---ACG--TTGAT-GAAATTCTTATCCTAGTTATCCTATAAATTACACATTTTA-GACAAAAAGTAAAA-TAA-TTCTT-ACATCAACGTGCGATAATACATCAGTGATAATGGAATGAGAAAGGTATCATTACAATAGTG--TT-TTATTGATTG--A--CATATATGATA--GTT-TCT-------TTGAAA-AA-C-G-TTAATTTGAAAGAAAACTAGCAATACATTTAGG-----------GGT-----------------T-GA-ATGGAAAAACTG-GCAACGCTATACTCTCAT--------CAATATGGAATAGGTCCA-TGAGGATCGATTTGTGATCTTTATATT---A-GTATACACTGCATCGAAGAAAATTCGAATATTTTTTTCTCAAAG--TCAAATCTTTGTTAGTCAAAGAGAAG-AACATTAAAGTTTGTATATTTGAAATCAGAAAGTGCGTTGAAAAAACACTTACCTCGCAACTTTA-TAA--TGATTATAGTGGT--AAAGGGAGAATGTTTTCAAT-ATCATCTCACGATTATAGAGAGGAGATTCAGCTACAGTTTTTGA-A-AAAAATATATTTTTATTGAGAGAACTACAACTGTTACGTAGTCTCGTATGCTGTATTGTTTACCTTTTTCACAAAAATTAAAACATTTCCGCACTTTACTTAAGTTTAAATTTAACTT-ACTTTATTTTAAAGA---------TTTCAGACGATTTT-ATTTCATC----------GTAATTCCATCTTTGTATAGATGAGGGTAGAAA
gi|10 : --CAGACGCGATA--TTT-CTT-------T-AAAATAATC-A-TGAGTTTTAAAAAAAA-------TGAATGTTGG-----------AGTGACAA---C---GAGGAC-GGAGGGGGAAAGCCG-ACTATGATATACCCTCAAATTCGCAACAACATATAATAGATCTACTTGAAA-t
gi|11 : actgtatgTTTTGTT--CCTCA------ATTGTTACATAATGTGTT---------A-------AAAAAACATTG----GTGGA----AATAGAAA-----AAAGAGTAAGTACAAAAGCA-TA---ATG--CTTAT-GAAATTCTTCTCCTAGTCGTGCTATACATTACACCTTT-ATGGCAAAAAG
gi|12 : TATT--TCTCA------GT---------ATATA--------------------CAATACATTG----GTATACA-CAA-AAAAA-----ACGGA-TAAGAACGAACGCA-TA---AAG--CTTAT-TAAATTCTTCCCCTA
gi|13 : gattagtttaaacaaatcaTTGAAATATTTCGACACTTTACTTAGTTT----TTTTATTTAACTTGTTTTTAAAGATAAAAACAGTTTCAGACG-CTTT-A-TTCATCGGGAAG----GTAATTTCATTCTCTAATAGATAACGGAACAAAtgaataaattgctgagatattt
gi|14 : TACTTTATT--TCTCA------AT---------ATATA-----------ATGTGTCCACAAA-CATTG----GTGAAAAACAATAGAAA-----AAGGGCTAAGAACGAATGCATTA---ATG--CTTCT-GAAATTCTTC
gi|15 : ttaaacatacatg-----------A-------ACAAAAC--TG----GTGAACAATAATAGAAA-----AAGAA-TAAGAACGAAGGC--TA-----------AT-GAAATTCTTCT
gi|16 : tagtttaaacgtatttacccgtatattcatagtgatTTTTGTA--TATAA------ATT--------GTGTT-----------A-------ACACCACATCA----ATTACCATTAATAGAAA-----AAAGA-TAAGAACGAAAGCA-TA---CTG--CTCAT-GAAATTTTTCTTCag
gi|17 : g---------TTTCAGACG-CTTTTGTTTCATCG----GAAACGCCATTCCAATCTCAAAAAGATGACGGTAGAA
gi|2 : aacagTCA------AT---------GTGTA-----------A-------ACCAAACATTG----GTTAACAATAGCAGAAA-----ACAGA-TAAGAACAAAAGCA-TA---ATG--CTTAT-CAAAATCTTCTCCTAGTCGTACTATAAATTACACAT-----GGC-AAAAGTAAAA-TAA-TTTAT-AAATAAATAT-TGAAAATAATTTGCTGACAATGAAAGGAGAAAGATATAAATACAATGGT-G-TT-CAACTGATTGTTA--CATATGTTATA--TTT-TTTACCCCTCTTCCCTC-C-C-G-TGAGTTTGAAAGAAAACTAGAAATAAATGTTAGTGTGACACATTGGT----A---TCTAG-GGATAGA-GGGGGTAAGCCG-ACAACGATATACTCTCAA--------CAGAATG-AATAGGTGT-------A-CGTTTTGTGTTCTTTATA-C---AATTATGTACTGCATCGAA---AATTCGAATATTTGT--CTTAAAG--TCAAAATGCTGTTCTCCAAAGAGAAGCGT-ATTTAGGTTGATATTGTCCAAGCCAGACAGTGCATT-----------------GCGACTCTATTGTGGTGCTCTT--TGCT--------------TTCTATATCACCA---CTCGATCACAGAG--GAGACTCAGTCACA-
gi|3 : gatatATAAATATATGAAAATGAACTGATTAGAGTGAGAATAGCAAGTTCTGATTACAAAAGTGG-TTATTACTGTTTT--ATACATACGCAATA--TTC-TTT-------TTAAAACAA-CCA-TGAATTTTTAAGAAAACTATGAATAAATATGGC-----------GGT----AATAC---ATGGAT-GG-AGGGGAAAAGCGTACTACAATATACAATCAC--------CAATATGTGATAGTTCTGCTTAAAA-CGTTTTGTGTT---TGTGTTTAAAAGTGTGTACTGAATCAAA---AATTTGAATATTGGC--C-CAAAAAATAAAAATTTTATTCTCCAAATAGAGG-GA-ACTAAGGTTAATATTTTTTAAGCTAGACAGTGCTTTGAGAAG-CATTTGCCTTGCAACTCCA-TGT--TTATTTT--TGTTTCAATGGAAAAATG
gi|4 : acattacttaaacaaaCA------AT---------GTGTA-----------A-------ACAAAATATTG----GTAAACAATAATAAAAA-----AGGGA-TAAGAACGACAG---------TG--------------CTTCTCCTAGTCGTACTA-AAACTAAAAATT-----ACACATGGTAAGATTTT-TTTTT-ACAAAAATATGTGAAAACAAATTAGTGATAATGAAAAGAGA-----ATGAT-------GTGA-TT-GTA---------A--CATACGCGATAGGTTTATTT-------TTAAAATAA-T-GATGAATTTGAAAGAAAACTTAAAATAATTGTTGG-----------GGT----a
gi|5 : ttatttcttgatatatatataTATTTCATT--TCTTACTCTATAT---------ATACA-----------ATGTATTCACGAAATATTG----GTGATTGACAATAACAA-----AGGGA-CAAAAACGAAGGCAGTATACATGTACTTATGGAAATAGT--TTCTGGTCATACTATAACTTACACATTA-T-GGCA-------------------------AAATATGGGAAAATAAATTAATGATGATGAAAATACAAATATCTGATTTCAAGGGTGGCTT-TTACTAATTG--gacagag
gi|6 : aaacaTGAACAATAAAAAATA-----AAGGA-TAAGAACAAAAACA-TA---ATG--GCAAT-GAAATTCTTCTCCTATTCTTACTATAGATTATATATTTAA-GACAAAAAGT--AC-TAA-TTTAT-ACATTTATAAGTGAAAATAAATTATTGACATTGAAAATAGAATATCATGATTGCAAAAGTGT-TT-Tgtac
gi|7 : ATCACACGAGCACAAAG--GAGACTCAGCC----TTTTTAATATATATATATATTTTGATTAAGAGATCTACAACTGGTACGGAGTCTCACAGACTGGCTTGTATGCTTCTTTCACCAAAGTTAAACTACCTTGGCACTTTACTTAGGTTCAGATTTA-----ACTTGCTTTTAAAGA----------TGCAGACG--TTT-ATgagctcattctta
gi|8 : TAAT-TTAGTT-TTTTATTCTTCTGA------AT---------ATGTATACAATGTGTTA-------ACAAAACACTGCATGATGAACAATAATAGAAACTTGAAAGGA-TAAGA----------------------TAT-GAAATTCGTTTCCTGGACTTACACTAAATTACACATTT---GTT-----GTAAAACTAATTTTATGACACAAATATGTAAAAA
gi|9 : actttcTTAGT-T-AATTCTATCATT--TAT---------T---------GTGAA-----------A-------ACAAAACATTG----GTAAACA-TAATAGAAA-----AGGAA-TAAGAACGAAAGCA-TA---ATG--CTTTT-GAAGTTATTTTCCT
Alignments
lowQualScore : 111 111111 222222222 4444444444444444444 3333 11111 11 11111 11 2222222 11111111 8888888888888888888888888888 1 1 1 333333333 111111111 22222 222 11 11 2222 2222222222222 1 11 11 5555555555 1 333 11 1111 222 111 22222 4444444444 11 1 6666666666
lowQualScore : 777 5 66 4 111111 000000000 3333333333333333333 7777 3 88888 6 6 6666 666 0 3 1 0000 0 99 1 3 33333 3 6 0 1 1 44 1 3 11 6 3 1 33333 11 8 6666666 0 66666666 777 1 8888888888888888888888888888 0 0 0 1 1 777777777 1 9 0 999999999 6 66666 7 333 88 7 88 1111 1 1 3 7777777777777 3 0 3 88 88 1 4444444444 22 5 222 88 8888 222 1 1 1 1 1 1 1 22 1 1 444 22222 1 3333333333 66 0 3 1111111111 3
lowQualScore : ... . .. . ...... ......... ................... .... . ..... . . .... ... . . . .... . .. . . ..... . . . . . .. . . .. . . . ..... .. . ....... . ........ ... . ............................ . . . . . ......... . . . ......... . ..... . ... .. . .. .... . . . ............. . . . .. .. . .......... .. . ... .. .... ... . . . . . . . .. . . ... ..... . .......... .. . . .......... .
lowQualScore : 777 6 99 1 555555 000000000 7777777777777777777 7777 3 33333 7 7 9999 333 4 3 7 9999 4 99 6 2 77777 7 7 3 0 0 33 8 3 88 7 2 0 00000 00 0 0000000 8 66666666 888 0 0000000000000000000000000000 0 0 0 0 2 222222222 2 2 2 000000000 7 77777 3 333 33 3 33 7777 0 0 7 0000000000000 7 7 3 33 33 0 3333333333 00 0 333 33 0000 000 0 0 0 0 0 0 0 00 0 0 777 33333 0 2222222222 55 0 2 7777777777 7
consensus : TTAAT-T-AATTATTTTATT--TCTCA------AT---------ATGTA-----------A-------ACAAAACATTG----GTGAACAATAATAGAAA-----AAGGA-TAAGAACGAAAGCA-TA---ATG--CTTAT-GAAATTCTTCTCCTAGTCGTACTATAAATTACACATTT-A-GGCAAAAAGTAAAA-TAA-TTTAT-ACATAAATATGTGAAAATAAATTANTGATAATGAAAANAGAAAGNTATGATTACAANAGTGG-TT-TTACTGATTG--A--CATACGCGATA--TTT-TTT-------TTAAAACAA-C-G-TGAATTTGAAAGAAAACTAGAAATAAATGTTGG-----------GGT----A---C---G-GGAT-GG-GGGGGAAAGCCG-ACNACGATATACTCTCAN--------CAATATGTAATAGGTCTACTTAAAA-CGTTTTGTGTTCTTTATATT---AAGTATGTACTGCATCGAA---AATTCGAATATTTGT--CTCAAAG--TCAAAATTTTGTTCTCCAAAGAGAAG-GA-ATTAAGGTTNATATTTTTNAAGCCAGACAGTGCGTTGAGAAG-CACTTGCCTCGCGACTCTA-TGT--TGATTTT--TGNT--AA-GGGAGAATGTTCTNNATCACCATC-CACGATCACAGAG--GAGACTCAGCCACA-TTTTTGATATANANATATATTTTNATTGAGAGANCTACAACTGNTACGNAGTCTCGCANGCTGNNTTGTNTGCCTCTTTCACNAAAGTTAAAATATTTCGGCACTTTACTTAGGTTCAGATTTAACTT-ACTTGNTTTTAAAGA---------TTTCAGACG-CTTT-ATTTCATCG----G----GTAATTCCATTCTCGAATAGATGACGGTAGAAA
Reference ( family-1443 ) : TTAAT-T-AATTATTTTATT--TCTCA------AT---------ATGTA-----------A-------ACAAAACATTG----GTGAACAATAATAGAAA-----AAGGA-TAAGAACGAAAGCA-TA---ATG--CTTAT-GAAATTCTTCTCCTAGTCGTACTATAAATTACACATTT-A-GGCAAAAAGTAAAA-TAA-TTTAT-ACATAAATATGTGAAAATAAATTANTGATAATGAAAANAGAAAGNTATGATTACAANAGTGG-TT-TTACTGATTG--A--CATACGCGATA--TTT-TTT-------TTAAAACAA-C-G-TGAATTTGAAAGAAAACTAGAAATAAATGTTGG-----------GGT----A---C---G-GGAT-GG-GGGGGAAAGCCG-ACNACGATATACTCTCAN--------CAATATGTAATAGGTCTACTTAAAA-CGTTTTGTGTTCTTTATATT---AAGTATGTACTGCATCGAA---AATTCGAATATTTGT--CTCAAAG--TCAAAATTTTGTTCTCCAAAGAGAAG-GA-ATTAAGGTTNATATTTTTNAAGCCAGACAGTGCGTTGAGAAG-CACTTGCCTCGCGACTCTA-TGT--TGATTTT--TGNT--AA-GGGAGAATGTTCTNNATCACCATC-CACGATCACAGAG--GAGACTCAGCCACA-TTTTTGATATANANATATATTTTNATTGAGAGANCTACAACTGNTACGNAGTCTCGCANGCTGNNTTGTNTGCCTCTTTCACNAAAGTTAAAATATTTCGGCACTTTACTTAGGTTCAGATTTAACTT-ACTTGNTTTTAAAGA---------TTTCAGACG-CTTT-ATTTCATCG----G----GTAATTCCATTCTCGAATAGATGACGGTAGAAA
gi|1 : TTAATAT-AATTATTTTATT--TCTGA------AT---------ATATA-----------T-------ACAAAGCATTG----GTGAACAATAATAGAAA-----AAGGA-AAAGAACGAAAGCA-CA---ACG--TTGAT-GAAATTCTTATCCTAGTTATCCTATAAATTACACATTTTA-GACAAAAAGTAAAA-TAA-TTCTT-ACATCAACGTGCGATAATACATCAGTGATAATGGAATGAGAAAGGTATCATTACAATAGTG--TT-TTATTGATTG--A--CATATATGATA--GTT-TCT-------TTGAAA-AA-C-G-TTAATTTGAAAGAAAACTAGCAATACATTTAGG-----------GGT-----------------T-GA-ATGGAAAAACTG-GCAACGCTATACTCTCAT--------CAATATGGAATAGGTCCA-TGAGGATCGATTTGTGATCTTTATATT---A-GTATACACTGCATCGAAGAAAATTCGAATATTTTTTTCTCAAAG--TCAAATCTTTGTTAGTCAAAGAGAAG-AACATTAAAGTTTGTATATTTGAAATCAGAAAGTGCGTTGAAAAAACACTTACCTCGCAACTTTA-TAA--TGATTATAGTGGT--AAAGGGAGAATGTTTTCAAT-ATCATCTCACGATTATAGAGAGGAGATTCAGCTACAGTTTTTGA-A-AAAAATATATTTTTATTGAGAGAACTACAACTGTTACGTAGTCTCGTATGCTGTATTGTTTACCTTTTTCACAAAAATTAAAACATTTCCGCACTTTACTTAAGTTTAAATTTAACTT-ACTTTATTTTAAAGA---------TTTCAGACGATTTT-ATTTCATC----------GTAATTCCATCTTTGTATAGATGAGGGTAGAAA
gi|10 : --CAGACGCGATA--TTT-CTT-------T-AAAATAATC-A-TGAGTTTTAAAAAAAA-------TGAATGTTGG-----------AGTGACAA---C---GAGGAC-GGAGGGGGAAAGCCG-ACTATGATATACCCTCAAATTCGCAACAACATATAATAGATCTACTTGAAA-t
gi|11 : actgtatgTTTTGTT--CCTCA------ATTGTTACATAATGTGTT---------A-------AAAAAACATTG----GTGGA----AATAGAAA-----AAAGAGTAAGTACAAAAGCA-TA---ATG--CTTAT-GAAATTCTTCTCCTAGTCGTGCTATACATTACACCTTT-ATGGCAAAAAG
gi|12 : TATT--TCTCA------GT---------ATATA--------------------CAATACATTG----GTATACA-CAA-AAAAA-----ACGGA-TAAGAACGAACGCA-TA---AAG--CTTAT-TAAATTCTTCCCCTA
gi|13 : gattagtttaaacaaatcaTTGAAATATTTCGACACTTTACTTAGTTT----TTTTATTTAACTTGTTTTTAAAGATAAAAACAGTTTCAGACG-CTTT-A-TTCATCGGGAAG----GTAATTTCATTCTCTAATAGATAACGGAACAAAtgaataaattgctgagatattt
gi|14 : TACTTTATT--TCTCA------AT---------ATATA-----------ATGTGTCCACAAA-CATTG----GTGAAAAACAATAGAAA-----AAGGGCTAAGAACGAATGCATTA---ATG--CTTCT-GAAATTCTTC
gi|15 : ttaaacatacatg-----------A-------ACAAAAC--TG----GTGAACAATAATAGAAA-----AAGAA-TAAGAACGAAGGC--TA-----------AT-GAAATTCTTCT
gi|16 : tagtttaaacgtatttacccgtatattcatagtgatTTTTGTA--TATAA------ATT--------GTGTT-----------A-------ACACCACATCA----ATTACCATTAATAGAAA-----AAAGA-TAAGAACGAAAGCA-TA---CTG--CTCAT-GAAATTTTTCTTCag
gi|17 : g---------TTTCAGACG-CTTTTGTTTCATCG----GAAACGCCATTCCAATCTCAAAAAGATGACGGTAGAA
gi|2 : aacagTCA------AT---------GTGTA-----------A-------ACCAAACATTG----GTTAACAATAGCAGAAA-----ACAGA-TAAGAACAAAAGCA-TA---ATG--CTTAT-CAAAATCTTCTCCTAGTCGTACTATAAATTACACAT-----GGC-AAAAGTAAAA-TAA-TTTAT-AAATAAATAT-TGAAAATAATTTGCTGACAATGAAAGGAGAAAGATATAAATACAATGGT-G-TT-CAACTGATTGTTA--CATATGTTATA--TTT-TTTACCCCTCTTCCCTC-C-C-G-TGAGTTTGAAAGAAAACTAGAAATAAATGTTAGTGTGACACATTGGT----A---TCTAG-GGATAGA-GGGGGTAAGCCG-ACAACGATATACTCTCAA--------CAGAATG-AATAGGTGT-------A-CGTTTTGTGTTCTTTATA-C---AATTATGTACTGCATCGAA---AATTCGAATATTTGT--CTTAAAG--TCAAAATGCTGTTCTCCAAAGAGAAGCGT-ATTTAGGTTGATATTGTCCAAGCCAGACAGTGCATT-----------------GCGACTCTATTGTGGTGCTCTT--TGCT--------------TTCTATATCACCA---CTCGATCACAGAG--GAGACTCAGTCACA-
gi|3 : gatatATAAATATATGAAAATGAACTGATTAGAGTGAGAATAGCAAGTTCTGATTACAAAAGTGG-TTATTACTGTTTT--ATACATACGCAATA--TTC-TTT-------TTAAAACAA-CCA-TGAATTTTTAAGAAAACTATGAATAAATATGGC-----------GGT----AATAC---ATGGAT-GG-AGGGGAAAAGCGTACTACAATATACAATCAC--------CAATATGTGATAGTTCTGCTTAAAA-CGTTTTGTGTT---TGTGTTTAAAAGTGTGTACTGAATCAAA---AATTTGAATATTGGC--C-CAAAAAATAAAAATTTTATTCTCCAAATAGAGG-GA-ACTAAGGTTAATATTTTTTAAGCTAGACAGTGCTTTGAGAAG-CATTTGCCTTGCAACTCCA-TGT--TTATTTT--TGTTTCAATGGAAAAATG
gi|4 : acattacttaaacaaaCA------AT---------GTGTA-----------A-------ACAAAATATTG----GTAAACAATAATAAAAA-----AGGGA-TAAGAACGACAG---------TG--------------CTTCTCCTAGTCGTACTA-AAACTAAAAATT-----ACACATGGTAAGATTTT-TTTTT-ACAAAAATATGTGAAAACAAATTAGTGATAATGAAAAGAGA-----ATGAT-------GTGA-TT-GTA---------A--CATACGCGATAGGTTTATTT-------TTAAAATAA-T-GATGAATTTGAAAGAAAACTTAAAATAATTGTTGG-----------GGT----a
gi|5 : ttatttcttgatatatatataTATTTCATT--TCTTACTCTATAT---------ATACA-----------ATGTATTCACGAAATATTG----GTGATTGACAATAACAA-----AGGGA-CAAAAACGAAGGCAGTATACATGTACTTATGGAAATAGT--TTCTGGTCATACTATAACTTACACATTA-T-GGCA-------------------------AAATATGGGAAAATAAATTAATGATGATGAAAATACAAATATCTGATTTCAAGGGTGGCTT-TTACTAATTG--gacagag
gi|6 : aaacaTGAACAATAAAAAATA-----AAGGA-TAAGAACAAAAACA-TA---ATG--GCAAT-GAAATTCTTCTCCTATTCTTACTATAGATTATATATTTAA-GACAAAAAGT--AC-TAA-TTTAT-ACATTTATAAGTGAAAATAAATTATTGACATTGAAAATAGAATATCATGATTGCAAAAGTGT-TT-Tgtac
gi|7 : ATCACACGAGCACAAAG--GAGACTCAGCC----TTTTTAATATATATATATATTTTGATTAAGAGATCTACAACTGGTACGGAGTCTCACAGACTGGCTTGTATGCTTCTTTCACCAAAGTTAAACTACCTTGGCACTTTACTTAGGTTCAGATTTA-----ACTTGCTTTTAAAGA----------TGCAGACG--TTT-ATgagctcattctta
gi|8 : TAAT-TTAGTT-TTTTATTCTTCTGA------AT---------ATGTATACAATGTGTTA-------ACAAAACACTGCATGATGAACAATAATAGAAACTTGAAAGGA-TAAGA----------------------TAT-GAAATTCGTTTCCTGGACTTACACTAAATTACACATTT---GTT-----GTAAAACTAATTTTATGACACAAATATGTAAAAA
gi|9 : actttcTTAGT-T-AATTCTATCATT--TAT---------T---------GTGAA-----------A-------ACAAAACATTG----GTAAACA-TAATAGAAA-----AGGAA-TAAGAACGAAAGCA-TA---ATG--CTTTT-GAAGTTATTTTCCT
blockSeqs : TT A CT C CTCTAT TGTTACATA TACAATGTGTTA CATG A CTTGA G T TACA TAC G G TAT AA A A CTAAT A G C G GA A T GC A C A TTA GG A ACCCCTC TAATCA AGA T TGTGACACATTGGTATCTAG A A T T C AATTCGCAA C T ACTTGAAA C TTTAA A . . T AA CGT G C A GAGAAGCATTTG T T GG . C TCAATGGAAA AT C TCA . ACA TAT T T G T G G G GC A C CAG ATTTA T TAAAAACAGT C T T GGGAAG T
blockSeqs : T A . C . T ATGTGTCC . A . C G A C . G TAA AC A A TTTT T . A T GT A A G . C T ATA . . . CAACCA ATG T AGTGACAACGA . . . A T A A T GCTTAAAA . C A . . . . GA A T T . . . . . T . . . . . . C T C . T GGAAAC A
blockSeqs : C . C . . ATGTATTC . T . . . A C . G AT AA T A TAA A . G G TA T G G . C A A . . . TAATGA TAA G GGTAATACAT . . . T A C T . A . . . .
blockSeqs : . . A . . TTA . A . . . A C . A T A A . TAA A . A T AT G A A . . . . . . CCCG . T
blockSeqs : . C . . A . A . . . C C . T . A . . . . . T T . . . T .
blockSeqs : . C . . A . A . . . A C . T . . .
blockSeqs : . T . . A . A . . . A G .
blockSeqs : G . . A . A . . . A C .
blockSeqs : . . . A . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . .
blockSeqCons : G* TAATCA**
originalCons : TTAAT-T-AATTATTTTATT--TCTCA------AT---------ATGTA-----------A-------ACAAAACATTG----GTGAACAATAATAGAAA-----AAGGA-TAAGAACGAAAGCA-TA---ATG--CTTAT-GAAATTCTTCTCCTAGTCGTACTATAAATTACACATTT-A-GGCAAAAAGTAAAA-TAA-TTTAT-ACATAAATATGTGAAAATAAATTANTGATAATGAAAANAGAAAGNTATGATTACAANAGTGG-TT-TTACTGATTG--A--CATACGCGATA--TTT-TTT-------TTAAAACAA-C-G-TGAATTTGAAAGAAAACTAGAAATAAATGTTGG-----------GGT----A---C---G-GGAT-GG-GGGGGAAAGCCG-ACNACGATATACTCTCAN--------CAATATGTAATAGGTCTACTTAAAA-CGTTTTGTGTTCTTTATATT---AAGTATGTACTGCATCGAA---AATTCGAATATTTGT--CTCAAAG--TCAAAATTTTGTTCTCCAAAGAGAAG-GA-ATTAAGGTTNATATTTTTNAAGCCAGACAGTGCGTTGAGAAG-CACTTGCCTCGCGACTCTA-TGT--TGATTTT--TGNT--AA-GGGAGAATGTTCTNNATCACCATC-CACGATCACAGAG--GAGACTCAGCCACA-TTTTTGATATANANATATATTTTNATTGAGAGANCTACAACTGNTACGNAGTCTCGCANGCTGNNTTGTNTGCCTCTTTCACNAAAGTTAAAATATTTCGGCACTTTACTTAGGTTCAGATTTAACTT-ACTTGNTTTTAAAGA---------TTTCAGACG-CTTT-ATTTCATCG----G----GTAATTCCATTCTCGAATAGATGACGGTAGAAA
finalCons : TTAAT-T-AATTATTTTATT--TCTCA------AT---------ATGTA-----------A-------ACAAAACATTG----GTGAACAATAATAGAAA-----AAGGA-TAAGAACGAAAGCA-TA---ATG--CTTAT-GAAATTCTTCTCCTAGTCGTACTATAAATTACACATTT-A-GGCAAAAAGTAAAA-TAA-TTTAT-ACATAAATATGTGAAAATAAATTANTGATAATGAAAANAGAAAGNTATGATTACAANAGTGG-TT-TTACTGATTG--A--CATACGCGATA--TTT-TTT-------TTAAAATAATCA--TGAATTTGAAAGAAAACTAGAAATAAATGTTGG-----------GGT----A---C---G-GGAT-GG-GGGGGAAAGCCG-ACNACGATATACTCTCAN--------CAATATGTAATAGGTCTACTTAAAA-CGTTTTGTGTTCTTTATATT---AAGTATGTACTGCATCGAA---AATTCGAATATTTGT--CTCAAAG--TCAAAATTTTGTTCTCCAAAGAGAAG-GA-ATTAAGGTTNATATTTTTNAAGCCAGACAGTGCGTTGAGAAG-CACTTGCCTCGCGACTCTA-TGT--TGATTTT--TGNT--AA-GGGAGAATGTTCTNNATCACCATC-CACGATCACAGAG--GAGACTCAGCCACA-TTTTTGATATANANATATATTTTNATTGAGAGANCTACAACTGNTACGNAGTCTCGCANGCTGNNTTGTNTGCCTCTTTCACNAAAGTTAAAATATTTCGGCACTTTACTTAGGTTCAGATTTAACTT-ACTTGNTTTTAAAGA---------TTTCAGACG-CTTT-ATTTCATCG----G----GTAATTCCATTCTCGAATAGATGACGGTAGAAA
Alignments
lowQualScore : 111 111111 222222222 4444444444444444444 3333 11111 11 11111 11 2222222 111 8888888888888888888888888888 1 1 1 33333333 111111111 22222 222 11 11 2222 2222222222222 1 11 11 5555555555 1 333 11 1111 222 111 22222 4444444444 11 1 6666666666
lowQualScore : 777 5 66 4 111111 000000000 3333333333333333333 7777 3 88888 6 6 6666 666 0 3 1 0000 0 99 1 3 33333 3 6 0 1 1 44 1 3 11 6 3 1 33333 11 8 6666666 44 6 444 777 1 8888888888888888888888888888 0 0 0 1 1 66666666 1 1 9 0 999999999 6 66666 7 333 88 7 88 1111 1 1 3 7777777777777 3 0 3 88 88 1 4444444444 22 5 222 88 8888 222 1 1 1 1 1 1 1 22 1 1 444 22222 1 3333333333 66 0 3 1111111111 3
lowQualScore : ... . .. . ...... ......... ................... .... . ..... . . .... ... . . . .... . .. . . ..... . . . . . .. . . .. . . . ..... .. . ....... .. . ... ... . ............................ . . . . . ........ . . . . ......... . ..... . ... .. . .. .... . . . ............. . . . .. .. . .......... .. . ... .. .... ... . . . . . . . .. . . ... ..... . .......... .. . . .......... .
lowQualScore : 777 6 99 1 555555 000000000 7777777777777777777 7777 3 33333 7 7 9999 333 4 3 7 9999 4 99 6 2 77777 7 7 3 0 0 33 8 3 88 7 2 0 00000 00 0 0000000 66 8 888 888 0 0000000000000000000000000000 0 0 0 0 2 22222222 0 2 2 2 000000000 7 77777 3 333 33 3 33 7777 0 0 7 0000000000000 7 7 3 33 33 0 3333333333 00 0 333 33 0000 000 0 0 0 0 0 0 0 00 0 0 777 33333 0 2222222222 55 0 2 7777777777 7
consensus : TTAAT-T-AATTATTTTATT--TCTCA------AT---------ATGTA-----------A-------ACAAAACATTG----GTGAACAATAATAGAAA-----AAGGA-TAAGAACGAAAGCA-TA---ATG--CTTAT-GAAATTCTTCTCCTAGTCGTACTATAAATTACACATTT-A-GGCAAAAAGTAAAA-TAA-TTTAT-ACATAAATATGTGAAAATAAATTANTGATAATGAAAANAGAAAGNTATGATTACAANAGTGG-TT-TTACTGATTG--A--CATACGCGATA--TTT-TTT-------TTAAAACAAT--CGTGAATTTGAAAGAAAACTAGAAATAAATGTTGG-----------GGT----A---C---G-GGAT-GG-GGGGGAAAGCCG-ACNACGATATACTCT--------CANCAATATGTAATAGGTCTACTTAAAA-CGTTTTGTGTTCTTTATATT---AAGTATGTACTGCATCGAA---AATTCGAATATTTGT--CTCAAAG--TCAAAATTTTGTTCTCCAAAGAGAAG-GA-ATTAAGGTTNATATTTTTNAAGCCAGACAGTGCGTTGAGAAG-CACTTGCCTCGCGACTCTA-TGT--TGATTTT--TGNT--AA-GGGAGAATGTTCTNNATCACCATC-CACGATCACAGAG--GAGACTCAGCCACA-TTTTTGATATANANATATATTTTNATTGAGAGANCTACAACTGNTACGNAGTCTCGCANGCTGNNTTGTNTGCCTCTTTCACNAAAGTTAAAATATTTCGGCACTTTACTTAGGTTCAGATTTAACTT-ACTTGNTTTTAAAGA---------TTTCAGACG-CTTT-ATTTCATCG----G----GTAATTCCATTCTCGAATAGATGACGGTAGAAA
Reference ( family-1443 ) : TTAAT-T-AATTATTTTATT--TCTCA------AT---------ATGTA-----------A-------ACAAAACATTG----GTGAACAATAATAGAAA-----AAGGA-TAAGAACGAAAGCA-TA---ATG--CTTAT-GAAATTCTTCTCCTAGTCGTACTATAAATTACACATTT-A-GGCAAAAAGTAAAA-TAA-TTTAT-ACATAAATATGTGAAAATAAATTANTGATAATGAAAANAGAAAGNTATGATTACAANAGTGG-TT-TTACTGATTG--A--CATACGCGATA--TTT-TTT-------TTAAAATAAT--CATGAATTTGAAAGAAAACTAGAAATAAATGTTGG-----------GGT----A---C---G-GGAT-GG-GGGGGAAAGCCG-ACNACGATATACTCT--------CANCAATATGTAATAGGTCTACTTAAAA-CGTTTTGTGTTCTTTATATT---AAGTATGTACTGCATCGAA---AATTCGAATATTTGT--CTCAAAG--TCAAAATTTTGTTCTCCAAAGAGAAG-GA-ATTAAGGTTNATATTTTTNAAGCCAGACAGTGCGTTGAGAAG-CACTTGCCTCGCGACTCTA-TGT--TGATTTT--TGNT--AA-GGGAGAATGTTCTNNATCACCATC-CACGATCACAGAG--GAGACTCAGCCACA-TTTTTGATATANANATATATTTTNATTGAGAGANCTACAACTGNTACGNAGTCTCGCANGCTGNNTTGTNTGCCTCTTTCACNAAAGTTAAAATATTTCGGCACTTTACTTAGGTTCAGATTTAACTT-ACTTGNTTTTAAAGA---------TTTCAGACG-CTTT-ATTTCATCG----G----GTAATTCCATTCTCGAATAGATGACGGTAGAAA
gi|1 : TTAATAT-AATTATTTTATT--TCTGA------AT---------ATATA-----------T-------ACAAAGCATTG----GTGAACAATAATAGAAA-----AAGGA-AAAGAACGAAAGCA-CA---ACG--TTGAT-GAAATTCTTATCCTAGTTATCCTATAAATTACACATTTTA-GACAAAAAGTAAAA-TAA-TTCTT-ACATCAACGTGCGATAATACATCAGTGATAATGGAATGAGAAAGGTATCATTACAATAGTG--TT-TTATTGATTG--A--CATATATGATA--GTT-TCT-------TTGAAA-AA---CGTTAATTTGAAAGAAAACTAGCAATACATTTAGG-----------GGT-----------------T-GA-ATGGAAAAACTG-GCAACGCTATACTCT--------CATCAATATGGAATAGGTCCA-TGAGGATCGATTTGTGATCTTTATATT---A-GTATACACTGCATCGAAGAAAATTCGAATATTTTTTTCTCAAAG--TCAAATCTTTGTTAGTCAAAGAGAAG-AACATTAAAGTTTGTATATTTGAAATCAGAAAGTGCGTTGAAAAAACACTTACCTCGCAACTTTA-TAA--TGATTATAGTGGT--AAAGGGAGAATGTTTTCAAT-ATCATCTCACGATTATAGAGAGGAGATTCAGCTACAGTTTTTGA-A-AAAAATATATTTTTATTGAGAGAACTACAACTGTTACGTAGTCTCGTATGCTGTATTGTTTACCTTTTTCACAAAAATTAAAACATTTCCGCACTTTACTTAAGTTTAAATTTAACTT-ACTTTATTTTAAAGA---------TTTCAGACGATTTT-ATTTCATC----------GTAATTCCATCTTTGTATAGATGAGGGTAGAAA
gi|10 : --CAGACGCGATA--TTT-CTT-------T-AAAATAAT--CATGAGTTTTAAAAAAAA-------TGAATGTTGG-----------AGTGACAA---C---GAGGAC-GGAGGGGGAAAGCCG-ACTATGATATACCCTCAAATTCGCAACAACATATAATAGATCTACTTGAAA-t
gi|11 : actgtatgTTTTGTT--CCTCA------ATTGTTACATAATGTGTT---------A-------AAAAAACATTG----GTGGA----AATAGAAA-----AAAGAGTAAGTACAAAAGCA-TA---ATG--CTTAT-GAAATTCTTCTCCTAGTCGTGCTATACATTACACCTTT-ATGGCAAAAAG
gi|12 : TATT--TCTCA------GT---------ATATA--------------------CAATACATTG----GTATACA-CAA-AAAAA-----ACGGA-TAAGAACGAACGCA-TA---AAG--CTTAT-TAAATTCTTCCCCTA
gi|13 : gattagtttaaacaaatcaTTGAAATATTTCGACACTTTACTTAGTTT----TTTTATTTAACTTGTTTTTAAAGATAAAAACAGTTTCAGACG-CTTT-A-TTCATCGGGAAG----GTAATTTCATTCTCTAATAGATAACGGAACAAAtgaataaattgctgagatattt
gi|14 : TACTTTATT--TCTCA------AT---------ATATA-----------ATGTGTCCACAAA-CATTG----GTGAAAAACAATAGAAA-----AAGGGCTAAGAACGAATGCATTA---ATG--CTTCT-GAAATTCTTC
gi|15 : ttaaacatacatg-----------A-------ACAAAAC--TG----GTGAACAATAATAGAAA-----AAGAA-TAAGAACGAAGGC--TA-----------AT-GAAATTCTTCT
gi|16 : tagtttaaacgtatttacccgtatattcatagtgatTTTTGTA--TATAA------ATT--------GTGTT-----------A-------ACACCACATCA----ATTACCATTAATAGAAA-----AAAGA-TAAGAACGAAAGCA-TA---CTG--CTCAT-GAAATTTTTCTTCag
gi|17 : g---------TTTCAGACG-CTTTTGTTTCATCG----GAAACGCCATTCCAATCTCAAAAAGATGACGGTAGAA
gi|2 : aacagTCA------AT---------GTGTA-----------A-------ACCAAACATTG----GTTAACAATAGCAGAAA-----ACAGA-TAAGAACAAAAGCA-TA---ATG--CTTAT-CAAAATCTTCTCCTAGTCGTACTATAAATTACACAT-----GGC-AAAAGTAAAA-TAA-TTTAT-AAATAAATAT-TGAAAATAATTTGCTGACAATGAAAGGAGAAAGATATAAATACAATGGT-G-TT-CAACTGATTGTTA--CATATGTTATA--TTT-TTTACCCCTCTT----CCCTCCCGTGAGTTTGAAAGAAAACTAGAAATAAATGTTAGTGTGACACATTGGT----A---TCTAG-GGATAGA-GGGGGTAAGCCG-ACAACGATATACTCT--------CAACAGAATG-AATAGGTGT-------A-CGTTTTGTGTTCTTTATA-C---AATTATGTACTGCATCGAA---AATTCGAATATTTGT--CTTAAAG--TCAAAATGCTGTTCTCCAAAGAGAAGCGT-ATTTAGGTTGATATTGTCCAAGCCAGACAGTGCATT-----------------GCGACTCTATTGTGGTGCTCTT--TGCT--------------TTCTATATCACCA---CTCGATCACAGAG--GAGACTCAGTCACA-
gi|3 : gatatATAAATATATGAAAATGAACTGATTAGAGTGAGAATAGCAAGTTCTGATTACAAAAGTGG-TTATTACTGTTTT--ATACATACGCAATA--TTC-TTT-------TTAAAACAAC--CATGAATTTTTAAGAAAACTATGAATAAATATGGC-----------GGT----AATAC---ATGGAT-GG-AGGGGAAAAGCGTACTACAATATACAAT--------CACCAATATGTGATAGTTCTGCTTAAAA-CGTTTTGTGTT---TGTGTTTAAAAGTGTGTACTGAATCAAA---AATTTGAATATTGGC--C-CAAAAAATAAAAATTTTATTCTCCAAATAGAGG-GA-ACTAAGGTTAATATTTTTTAAGCTAGACAGTGCTTTGAGAAG-CATTTGCCTTGCAACTCCA-TGT--TTATTTT--TGTTTCAATGGAAAAATG
gi|4 : acattacttaaacaaaCA------AT---------GTGTA-----------A-------ACAAAATATTG----GTAAACAATAATAAAAA-----AGGGA-TAAGAACGACAG---------TG--------------CTTCTCCTAGTCGTACTA-AAACTAAAAATT-----ACACATGGTAAGATTTT-TTTTT-ACAAAAATATGTGAAAACAAATTAGTGATAATGAAAAGAGA-----ATGAT-------GTGA-TT-GTA---------A--CATACGCGATAGGTTTATTT-------TTAAAATAAT--GATGAATTTGAAAGAAAACTTAAAATAATTGTTGG-----------GGT----a
gi|5 : ttatttcttgatatatatataTATTTCATT--TCTTACTCTATAT---------ATACA-----------ATGTATTCACGAAATATTG----GTGATTGACAATAACAA-----AGGGA-CAAAAACGAAGGCAGTATACATGTACTTATGGAAATAGT--TTCTGGTCATACTATAACTTACACATTA-T-GGCA-------------------------AAATATGGGAAAATAAATTAATGATGATGAAAATACAAATATCTGATTTCAAGGGTGGCTT-TTACTAATTG--gacagag
gi|6 : aaacaTGAACAATAAAAAATA-----AAGGA-TAAGAACAAAAACA-TA---ATG--GCAAT-GAAATTCTTCTCCTATTCTTACTATAGATTATATATTTAA-GACAAAAAGT--AC-TAA-TTTAT-ACATTTATAAGTGAAAATAAATTATTGACATTGAAAATAGAATATCATGATTGCAAAAGTGT-TT-Tgtac
gi|7 : ATCACACGAGCACAAAG--GAGACTCAGCC----TTTTTAATATATATATATATTTTGATTAAGAGATCTACAACTGGTACGGAGTCTCACAGACTGGCTTGTATGCTTCTTTCACCAAAGTTAAACTACCTTGGCACTTTACTTAGGTTCAGATTTA-----ACTTGCTTTTAAAGA----------TGCAGACG--TTT-ATgagctcattctta
gi|8 : TAAT-TTAGTT-TTTTATTCTTCTGA------AT---------ATGTATACAATGTGTTA-------ACAAAACACTGCATGATGAACAATAATAGAAACTTGAAAGGA-TAAGA----------------------TAT-GAAATTCGTTTCCTGGACTTACACTAAATTACACATTT---GTT-----GTAAAACTAATTTTATGACACAAATATGTAAAAA
gi|9 : actttcTTAGT-T-AATTCTATCATT--TAT---------T---------GTGAA-----------A-------ACAAAACATTG----GTAAACA-TAATAGAAA-----AGGAA-TAAGAACGAAAGCA-TA---ATG--CTTTT-GAAGTTATTTTCCT