lowQualScore : 6
lowQualScore : .
lowQualScore : 7
consensus : AGGGACAAAAACCCCAAACTTCGAGGGACATGGAAAACTT
Reference ( gi|19 ) : AGGGACAAAAACCCCAAACTTTGAGGGACATGGAAAACTT
gi|18 : AGGGACAAAAACCCCAAACTTTGAGGGACATGGAAAACTT
gi|17 : aGACAAAAACAC-AAACTTTGAGAGACATTGGAAAC
gi|16 : acattgtAAAAACCCAAAGTTCGAGGGACATGGAAAAc
16 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|1 ): GGGTCACTCGTTTAAAAAGTGTGTCAAAATTGTGTAGTGATTGAATATTTGGGACATGGAAAACC
Unaligned ( gi|2 ): AGTTCATTTGATTAATTAGTGTGACAAAAAATTAAAAATTTGAGGTGATTTACCTTAAAAAATGG
Unaligned ( gi|3 ): TAAGGGTCATTTGGCTAAACGATGACACAAAAATGTAATTGAGCAAAAGACAAGATAAAACACC
Unaligned ( gi|4 ): TTCAGTTGATTAAATAATGTGACAAAAACAAAAACTGTGTAAAATAATGTACTCTAAAAAAAAA
Unaligned ( gi|5 ): AAGGGTCATTTGATTAAATAGTGCAACAAAAATACAAACTTTCAGATTACCCTGAATT
Unaligned ( gi|6 ): GGACTTTTGATTAAAATGTGTCAAAAATACAAAAACTCTGTGCCCGCATTGTTGTAAA
Unaligned ( gi|7 ): TAAGAGACATTTGATTTAAAGTGTAGAAAAATGTAAATTTTGAGGGACAAACCCT
Unaligned ( gi|8 ): GGTCATTTGAATAAATTGTGACAAAATTTAAAAAAACCCTGCTTTGACTGCATT
Unaligned ( gi|9 ): AGAGCCATTTAATATTAATGTGACAAAGACACAAAATTTATAAAACTCTTG
Unaligned ( gi|10 ): ACTTTAAAAAAGATGTCCAAAATGCAGAATATGAGAAACATGGAAAACCT
Unaligned ( gi|11 ): GGTCATTTGATTAGTGTGACCAAAGATATGAGGGTCTTGAAAAACCTT
Unaligned ( gi|12 ): TTTAAAAAGTGTGACAAAAAATGCAAAATATGAAGGACTTGGAAACA
Unaligned ( gi|13 ): AGGTTCGTTTGATTAAATGGTGTGACAAAAACTCAAAACCGTCTGAG
Unaligned ( gi|14 ): TGTGAAATACTTGTAGTGTGACAAAAAAAAAGGGTCATGAAAACCCT
Unaligned ( gi|15 ): ATTTGATTAAAAAGTGTGGAAAACTGTTGAAAGCGATGGTAAACAC
Unaligned ( gi|20 ): ATGTGTCAAAACCCGTATTTTAAGAGACATGGAAAACC
Alignments
lowQualScore : 2 2
lowQualScore : . .
lowQualScore : 5 0
consensus : AGGGACAAAAACCCCAAACTTTGAGGGACATGGAAAACTT
Reference ( family-13571 ) : AGGGACAAAAACCCCAAACTTCGAGGGACATGGAAAACTT
gi|16 : AAAAACCCAAAGTTCGAGGGACATGGAAAA
gi|17 : attataaagtctggtGACAAAAACAC-AAACTTTGAGAGACATTGGAAAC
gi|18 : acattgtAGGGACAAAAACCCCAAACTTTGAGGGACATGGAAAACTTc
gi|19 : aAGGGACAAAAACCCCAAACTTTGAGGGACATGGAAAACTT
16 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): GGGTCACTCGTTTAAAAAGTGTGTCAAAATTGTGTAGTGATTGAATATTTGGGACATGGAAAACC
Unaligned ( gi|2 ): AGTTCATTTGATTAATTAGTGTGACAAAAAATTAAAAATTTGAGGTGATTTACCTTAAAAAATGG
Unaligned ( gi|3 ): TAAGGGTCATTTGGCTAAACGATGACACAAAAATGTAATTGAGCAAAAGACAAGATAAAACACC
Unaligned ( gi|4 ): TTCAGTTGATTAAATAATGTGACAAAAACAAAAACTGTGTAAAATAATGTACTCTAAAAAAAAA
Unaligned ( gi|5 ): AAGGGTCATTTGATTAAATAGTGCAACAAAAATACAAACTTTCAGATTACCCTGAATT
Unaligned ( gi|6 ): GGACTTTTGATTAAAATGTGTCAAAAATACAAAAACTCTGTGCCCGCATTGTTGTAAA
Unaligned ( gi|7 ): TAAGAGACATTTGATTTAAAGTGTAGAAAAATGTAAATTTTGAGGGACAAACCCT
Unaligned ( gi|8 ): GGTCATTTGAATAAATTGTGACAAAATTTAAAAAAACCCTGCTTTGACTGCATT
Unaligned ( gi|9 ): AGAGCCATTTAATATTAATGTGACAAAGACACAAAATTTATAAAACTCTTG
Unaligned ( gi|10 ): ACTTTAAAAAAGATGTCCAAAATGCAGAATATGAGAAACATGGAAAACCT
Unaligned ( gi|11 ): GGTCATTTGATTAGTGTGACCAAAGATATGAGGGTCTTGAAAAACCTT
Unaligned ( gi|12 ): TTTAAAAAGTGTGACAAAAAATGCAAAATATGAAGGACTTGGAAACA
Unaligned ( gi|13 ): AGGTTCGTTTGATTAAATGGTGTGACAAAAACTCAAAACCGTCTGAG
Unaligned ( gi|14 ): TGTGAAATACTTGTAGTGTGACAAAAAAAAAGGGTCATGAAAACCCT
Unaligned ( gi|15 ): ATTTGATTAAAAAGTGTGGAAAACTGTTGAAAGCGATGGTAAACAC
Unaligned ( gi|20 ): ATGTGTCAAAACCCGTATTTTAAGAGACATGGAAAACC
Alignments
lowQualScore : 0
lowQualScore : .
lowQualScore : 8
consensus : AGGGACAAAAACCCCAAACTTTGAGGGACATGGAAAACTT
Reference ( family-13571 ) : AGGGACAAAAACCCCAAACTTTGAGGGACATGGAAAACTT
gi|16 : AAAAACCCAAAGTTCGAGGGACATGGAAAA
gi|17 : attataaagtctggtGACAAAAACAC-AAACTTTGAGAGACATTGGAAAC
gi|18 : acattgtAGGGACAAAAACCCCAAACTTTGAGGGACATGGAAAACTTc
gi|19 : aAGGGACAAAAACCCCAAACTTTGAGGGACATGGAAAACTT
gi|20 : CAAAA--CCCGTATTTTAAGAGACATGGAAAAC
blockSeqCons :
originalCons : AGGGACAAAAACCCCAAACTTTGAGGGACATGGAAAACTT
finalCons : AGGGACAAAAACCCCAAACTTTGAGGGACATGGAAAACTT
15 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): GGGTCACTCGTTTAAAAAGTGTGTCAAAATTGTGTAGTGATTGAATATTTGGGACATGGAAAACC
Unaligned ( gi|2 ): AGTTCATTTGATTAATTAGTGTGACAAAAAATTAAAAATTTGAGGTGATTTACCTTAAAAAATGG
Unaligned ( gi|3 ): TAAGGGTCATTTGGCTAAACGATGACACAAAAATGTAATTGAGCAAAAGACAAGATAAAACACC
Unaligned ( gi|4 ): TTCAGTTGATTAAATAATGTGACAAAAACAAAAACTGTGTAAAATAATGTACTCTAAAAAAAAA
Unaligned ( gi|5 ): AAGGGTCATTTGATTAAATAGTGCAACAAAAATACAAACTTTCAGATTACCCTGAATT
Unaligned ( gi|6 ): GGACTTTTGATTAAAATGTGTCAAAAATACAAAAACTCTGTGCCCGCATTGTTGTAAA
Unaligned ( gi|7 ): TAAGAGACATTTGATTTAAAGTGTAGAAAAATGTAAATTTTGAGGGACAAACCCT
Unaligned ( gi|8 ): GGTCATTTGAATAAATTGTGACAAAATTTAAAAAAACCCTGCTTTGACTGCATT
Unaligned ( gi|9 ): AGAGCCATTTAATATTAATGTGACAAAGACACAAAATTTATAAAACTCTTG
Unaligned ( gi|10 ): ACTTTAAAAAAGATGTCCAAAATGCAGAATATGAGAAACATGGAAAACCT
Unaligned ( gi|11 ): GGTCATTTGATTAGTGTGACCAAAGATATGAGGGTCTTGAAAAACCTT
Unaligned ( gi|12 ): TTTAAAAAGTGTGACAAAAAATGCAAAATATGAAGGACTTGGAAACA
Unaligned ( gi|13 ): AGGTTCGTTTGATTAAATGGTGTGACAAAAACTCAAAACCGTCTGAG
Unaligned ( gi|14 ): TGTGAAATACTTGTAGTGTGACAAAAAAAAAGGGTCATGAAAACCCT
Unaligned ( gi|15 ): ATTTGATTAAAAAGTGTGGAAAACTGTTGAAAGCGATGGTAAACAC
Alignments
lowQualScore : 0
lowQualScore : .
lowQualScore : 8
consensus : AGGGACAAAAACCCCAAACTTTGAGGGACATGGAAAACTT
Reference ( family-13571 ) : AGGGACAAAAACCCCAAACTTTGAGGGACATGGAAAACTT
gi|16 : AAAAACCCAAAGTTCGAGGGACATGGAAAA
gi|17 : attataaagtctggtGACAAAAACAC-AAACTTTGAGAGACATTGGAAAC
gi|18 : acattgtAGGGACAAAAACCCCAAACTTTGAGGGACATGGAAAACTTc
gi|19 : aAGGGACAAAAACCCCAAACTTTGAGGGACATGGAAAACTT
gi|20 : CAAAA--CCCGTATTTTAAGAGACATGGAAAAC
15 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): GGGTCACTCGTTTAAAAAGTGTGTCAAAATTGTGTAGTGATTGAATATTTGGGACATGGAAAACC
Unaligned ( gi|2 ): AGTTCATTTGATTAATTAGTGTGACAAAAAATTAAAAATTTGAGGTGATTTACCTTAAAAAATGG
Unaligned ( gi|3 ): TAAGGGTCATTTGGCTAAACGATGACACAAAAATGTAATTGAGCAAAAGACAAGATAAAACACC
Unaligned ( gi|4 ): TTCAGTTGATTAAATAATGTGACAAAAACAAAAACTGTGTAAAATAATGTACTCTAAAAAAAAA
Unaligned ( gi|5 ): AAGGGTCATTTGATTAAATAGTGCAACAAAAATACAAACTTTCAGATTACCCTGAATT
Unaligned ( gi|6 ): GGACTTTTGATTAAAATGTGTCAAAAATACAAAAACTCTGTGCCCGCATTGTTGTAAA
Unaligned ( gi|7 ): TAAGAGACATTTGATTTAAAGTGTAGAAAAATGTAAATTTTGAGGGACAAACCCT
Unaligned ( gi|8 ): GGTCATTTGAATAAATTGTGACAAAATTTAAAAAAACCCTGCTTTGACTGCATT
Unaligned ( gi|9 ): AGAGCCATTTAATATTAATGTGACAAAGACACAAAATTTATAAAACTCTTG
Unaligned ( gi|10 ): ACTTTAAAAAAGATGTCCAAAATGCAGAATATGAGAAACATGGAAAACCT
Unaligned ( gi|11 ): GGTCATTTGATTAGTGTGACCAAAGATATGAGGGTCTTGAAAAACCTT
Unaligned ( gi|12 ): TTTAAAAAGTGTGACAAAAAATGCAAAATATGAAGGACTTGGAAACA
Unaligned ( gi|13 ): AGGTTCGTTTGATTAAATGGTGTGACAAAAACTCAAAACCGTCTGAG
Unaligned ( gi|14 ): TGTGAAATACTTGTAGTGTGACAAAAAAAAAGGGTCATGAAAACCCT
Unaligned ( gi|15 ): ATTTGATTAAAAAGTGTGGAAAACTGTTGAAAGCGATGGTAAACAC