lowQualScore : 11111 11 22 1 111 11111 3333 11 222 1 1 22 111 3333 2222 1 3333 1
lowQualScore : 2 22 6 4 55555 2 2 3 4 2 3 2 33 2 88 33 3 333 77 2 5 555 33 44444 2 6 2222 11 6 4 6 66 444 7 66 3 777 2 6 3 5 3 5 0 6 6 6 888 8 00 8 0 444 1111 9 7 3 4 8888 5 2 5555 6 7 6
lowQualScore : . .. . . ..... . . . . . . . .. . .. .. . ... .. . . ... .. ..... . . .... .. . . . .. ... . .. . ... . . . . . . . . . . ... . .. . . ... .... . . . . .... . . .... . . .
lowQualScore : 1 88 0 0 99999 0 1 1 2 1 6 1 11 4 33 11 8 444 44 6 0 222 77 99999 7 3 3333 66 0 3 0 11 000 4 11 9 888 0 0 8 5 9 2 5 9 7 0 777 0 66 0 8 888 8888 0 8 0 7 3333 0 5 0000 0 0 0
consensus : CATTTATTCTCTCATTACATTTACATGTAA-AAAT--GAGG-A-AAA--G--T-ACAAA-TATTA-TA-ACAGGT-AGTGTTAATTGTGTTGGCTAGTC--CTCTCCTATC-ACATCCAGTGTATA--CCCAGTCCGGTC--TGCGCACGGCNGTCAATGACCATCGTCATTAGACTCT--GG-C---G-TGTAGCCAGGTACTAATACCGCTGTTGTCTCCGGCTTAAACCATGCACACACCGATCTGG--ACACACACTGNCAGAAGACACAGT--GAGG---TAGCCTCGGATTTTATCATTATAATTTTGAATTNAAGCGTCTTAAATCAGGGAGGAAGTGTGAAGTACATGTTAGTACGTTATCGGGTTGCATAATCAATGAAATAGTGAATAACTATTGGTCGGTTCGCCGTGAGTGAAATTACATTATTTGGCTAC-GTNGGG-GAAATCGTGCCATGTGCACTTGCGGCAAGAA-TAGAATCNACAGTGNGGAATACTATTATNTACT----ATCGATTACAACCATGTCATTGATATATTTGGCGGTGTAGNAAGAAGGCGGTGTTAAGCA
Reference ( gi|1 ) : CATTTATTCTCTCATTACATTTACATGTAA-AAAT--GAGG-A-AAA--G--T-ACAAA-TATTA-TA-ACAAGT-AGTGTTAATTGTGTTGGCTAGTC--CTCTCCTATC-ACATTGAGTGTATA--CCCAGTCTGGTC--TGCTTATGGCTGTCATTGACCATCGTCGTAAGACTCT--GG-T---G-TGTAGCCAGGTACTAATACCACCATTGTCTCCAACTTAAACCATGCACATACCAATCCGG--ACACTTACTGTCAGAAGACACAGT--GAAG---TAGCCTCGGATTTTATCATTATAATCTCGAATTTAAGCATCTTAAATCAGGGAGAAAGTGTGAATTACATGTTAGTACGTTATTGGGTTGCATAATCAATGAAAAAGTGAATAACTATTGGTCGGTTCGCCATGAGCGAAATTACATTATTTGGCTAC-ATTTGG-GAAATCGTGCCATGTGCACTTGCAAGAAAAATTATAATCAACAGTGTGGAATACTATTATTTACT----ATCAATTACAACCATTTCATTGATATATTTGACGGTGTAGCAAGAATCCTGTATTTAACAGAG
gi|2 : CATTTATTCTCTCATTACATTTACATGTTA-AAAT--GAGG-A-AAAA-G--T-TTAAA-TATTA-TA-ACAGGT-AGTGTTAATTGTGTTGGTCAGTC--CTCTCCTATC-ACATCGAGTGTATA--CTCAGTCCGGTC--TGAGCATGGCTGTCAATGACCATCGTCATTAGAATCT--CG-C---A-TGTAGCCAGGTACTAATACCGCCGTTGTCTCCTGCTTAAACCATGCACACGACGATCTGG--ACACACACTGTCAGAAGACACAGT--GAGG---TAGCCTTGGATTTTATCATTATAACCTTGAATTTAAGTGTCTAAAATCAGGGATGAAGTTTGAAGTACAT--------GTTATCGGGTTGCATAATCAATGAAATAGCGAATAACTATTGGTCAGTTTGTTGTGAGTGAAATTACATTATTTGGCTAC-ATTTGGTAAAATTGTGCCATGTGCACTTGCAGCAAGAA-TATAATCTACAGTGGGGAATACTATTA
gi|3 : caacaacaacaattaCATTTATTCTCTCATTTCATTAACATG-GA-AAAT--GAGG-A-AAA--AAAT-ACAAA-TTTTA-TA-ACAGGT-AGTGTTATTTGTGATGGCTAGTC--CTCTCCTGTC-ACATCCAGTGTATATACCCAGTCAGGTC--TGCGCACGGCTGTCAATGACCATCGTCATTAGACTCT--GG-C---G-TGTTGCCAGGTGCT------------GTCTCCAGCTTAAACCATGCACACGCCGATCTGGACACACACACTGTCAGAAGACACTGTCAGAAGACACAGCCTCGGATTTTATCGTTATAATCTTGAATTTAAGCGTCTTTAATCAGGGAGGAACTGTTAAATGCATATTAGTACTTTATCGGGTTGCATAATCAATAAAATAGTGAATAACTATTGGTCGGTTCGCAGTGGATGAAATTACAT
gi|6 : acaacatcaacaacaattaCATTTATTCTCTCGTTATATTTACATGTAG-AAAT--GAGG-A-AAAA-G--T-ACAAA-TATTA-TA-ACAGAT-AGTGTTAATTGTGTTGGCTAGAT--CTCTCCTATC-ACATCCGGTGTATG--CCCAGTCCGGTA--AACGCACAGCAGTCAATGACCATCGTCATTAGACTCT--GACT---G--GTAGCCAGGTACTAATACCGCTG-TATCTCAGGCTTAAACTATGCACACACCGATCTGG--ACACACACTGTCAGAAGACACAGT--GAAG---TAGCCTCGGA-TTAATCATTATATTTTTGAATTTAAGCGTTTTAAATCAGGGAGGAAGTGTGAAGTACACGTTAGTACGTTATCGGGTGGCATAATCAATGAAA
gi|11 : acaacagcaacaattaCATTTATTCTTTCATTACATTTACATGTAA-AAAT--AAGG-A-AAAA-G--T-ACAAA-CATTA-TA-TCAGGT-AGTGTTAATTGTGTTGGCTAGTC--CTCTCCTATC-ACACC-AGTGTGTA--CCCAGTCTGGTC--TGCACATGGCAGTCAATGACCATTGTCTTTAAACTCT--GG-C---T-TGTAGTCAGGTACTAATACCGCTGT-GTCCCTGGCTTAAACCATGCACACACCAATCTGG--ACACACACTGGCAGAAGACACAGT--GAGG---TAACCTTGGATTTTATCATTATt
gi|10 : aacaacaaaaacaattaCATTTATTCTCTCATTACATGTACATGTAA-AAAT--AAGG-A-AAAC-G--T-ACAAA-TATTA-TA-AC-AGTAAGTGTTAATTTTGCTGGCTAATC--CTCTCCTAAT-ACATCCAGTTCATA--CCCAGTCCGGTT--TGCGCCCGGCTATCAATAACTATCGTCATTAGACTCT--CT-T---G-TGTAGCC--------------CTGTTGTCTCCGGCTTAAACCATGCACACATCGATTTGG--ACA--TA----CAGAAGACACAGT--GAGG---TAGCCGCAAATTTTATCATTATAATTTTGAATTGAAGCGTTTTAAATCtgagtttga
gi|8 : tatcaacagccacaattgCATTTATTATCTCATTACATTTACATGTCA-AAAA--CAGG-A-ACA--A--T-ACGAA-TTGTG-TA-ATAGGT-AGTGTAAGTTGTGTTGGCTGGTC--CTCTCCTATC-AGATCCAGTGTAGA--CCCAGTCCGGTC--AGCGCATGGCAGTCAAGGACCATCA-CG-----------GG--------ATAGCCAAGTACCAATACAGCTG-TGCCCGCGGCATGAAACATGTACACACTGATCTGG--ACAAACACTGACAGAAATCGCGAT--AAGG---TAAGCTTGAATTTTATCATTATAATTGTGAATTAAATCGTCTTATATATGGGGGGAAGTGTGAAGTACATGTTAGAAGGTTATAGTGTTAC
gi|14 : caaaaacaacaacaatagCATTTATTCTCGCATTACATTTACATGTAA-AAAT--GAGA-A-AAAAAG--T-ACAAA-TATTA-TA-ACAGGT-AGTGTTAAT-GTGTTGGCTGGTC--CTCTCCCTTC-ACATCCAGTGTATA--CCCAGTCTGGTC--TGC-CACGGCTGTCAGTGACCATTGTCATAAGACTCTGCGA-C---GATGTGGCCAGGTACTAATtatttaaaaccataaaat
gi|16 : aaacaacaacaaaaattaCATTTATTTTCTCATTACATTTACATGCAA-AAAT--GAGG-A-AAAA-G--T-ACAAA-TATTA-TA-ACAGGT-AGTGTTAATTATGTTGGCTAGTC--CTCTCTTATC-ACATCCAGTGTATA--CCCAGTCCGGTT--TGCGCACGGCTGTCAATGACCATCGT-ATTAGACTCT--GG-C---G-TGTAG
gi|22 : caacaatacaacaacaactaCATTTATTCTCTCATTACCTTAACATGTAA-AA-T--GAGGGA-AAA--G--A-ACAAAATTTTA-TA-ACAAGT-AGTGTTAATTGTGTTGGCTTGTA--CTCTC
gi|24 : tacaacagcaactacatttcCATTTATTCTCTCATTACATTTATATG-AA-AAAT--TAAG-ACAAA--A--T-TCAAC-TTTTA-TA-ACAGTT-AGTGTTAATTGTGTTGGCTA
gi|13 : ataacaacaacaataacgaCATTTAATCTCAAATCATATTTACAT-CAATAAAT--GAGT-A-GAA--G----ACAAA-T-TTAGTG-TCTGAT-AATGCCTGGTACGTTGGCTGGTC--GCCCTCTATC-AGATCCATTAAAGA--TCCAGCCCGGCC--AGCGAATGGCAATTAGGGATCACCGTCATTAGACTCT--GG-CGGAG-TTCAGCCAGCTACGAATACCGC
gi|21 : acagcaacgatcacaacactaaCATCTATTCTC--ATTA-ATC------------AT--GAGG-ACAAA--A--T-GCACA-TTTTAGTATATAAA--AGTGTCAATTGTGTTAGCCATTCAAATTTCATATCAACATTG-GCATATG--Ctgtatcactg
gi|18 : caacatcaacaacaacactagTTTATTCTCTCATTACATTTACATGTAA-AAAT--GAGG-A-AAA--A--TTACAAA-TTTTA-TA-ACTGAT-AGTGTTAATTGTGTTGGCTAGTT--CTCTACTGCC-ACA----GTGTATA--CCCAGTCCGGTC--TGCGCACGGCTGTCAGTGACCATCGTCATTAGGCTCT--GG-C---G-TGTAGCCAGGTAC
gi|15 : TTATTCTCTCATTACATTTACATGTAA-AAAT--GAGG-A-AAA--G--T-ACAAA-TATTA-TA-ACAGGT-AGTGTTAATTGTGTTGGCTAGTC--CTCTCCTATC-ACATCCAGTGTATA--CCCAGTCCGATC--TGTACACGGCTGCCAATGACCATCGTCATTAGACTCT--GG-C---G-TGTAG
gi|17 : caacagcaacaacaacaacaacaTTATTCTTTCATTACATTACCATGTGA-AAAT--GAGG-A-AAAA-G--T-GCAAA-TATTA-TA-ACAGGT-AGCGTTAATTGT--TGACTAGTA--CTCTCCTGTC-ACATCCAGTGTATA--CCCAGTCTGGTC--AGAGCACGGCTGCCAATGATCATCGTCATAAGA--CT--GA-C---G-TGTAGTCAGGTACTAATACCGC---TGTATCC
gi|27 : TTATTCTCTCATTACATTTACATGTAA-AAATTGGGGG-A-AAA--A--T-ACAAA-TATg
gi|29 : ataacaacaataacaTCTCATTACATTTACATGTAA-AAAT--GAGGAA-AAA--G--T-ATAAaa
gi|19 : taCATGTAA-AAAT--GAGGGA-AAA--G--C-ACAAA-TATTA-TA-ACAGGT-AGTGTTAATTGTGTTGACTAGTC--CTCTCCTATC-ACATCCAGTGTATA--TCCAGTCCAGTC--TGCGCACGGCTGTCAATGACCGTCGTCATTAGTCTCT--GG-C---G-TGCAGCCAGGTACTTATACtt
gi|23 : AA-AAAT--GAAG-A-AAA--A--T-A------------G-ACAGGT-AGTATCAATTGTGTTGGCTGGTC--CTCTCCTATC-ACATTCAGTGTAGA--CCCAGTCCGGTC--AGCGCAT---CGTCATTtgtt
gi|4 : --GAGG-A-AAA--AA-T-ACAAA-TATTA-TA-ACAGGT-AGTATTAATTGTGTTGGCTAGTC--CTCTCCTACC-ACATCCAGTGTATA--CTCAGTCTG-----TGC--ATGACAGTCAATGACCATTGTCATTAGACT----GA-T---G-TGTAGCCAGGAACTAATACCACTGT-GTCTCCGGCTTGAACCATGCACACACTGATCTGG--ACATACACTGGCAGAAGACACAGT--GATG---TAGCCTTAGATTTTATCATTATAATTTTGAATTAAAGCATCTTAAATCAAGGAGAAAG-------TACATGTTAGTACGTTATCGGGTTGCATAATCAATGAAATAGTGAATAATTATTGGTCCGTTCGCTGTGAGTGAAATTACATTATTTGGCTGTGAT---A-GAAATTGTGCCATGTGCACTTGCAGCAATAATaggctctg
gi|12 : gtataaatgtctgaTG-TA-ATAGGT-AGTGTAAGTTGTGTTGGCTGGTC--CTCTCCTATC-AGATCCAGTGTAGA--CCCAGTCCGGTC--AGCGCATGGCAGTCAAGGACCATCA-CG-----------GG--------ATAGCCAAGTACCAATACAGCTGT-GCCCGCGGCATGAAACATGTACACACTGATCTGG--ACAAACACTGACAGAAATCGCGAT--GAGG---TAAGCTTGAATTTTATCATTATAATTGTGAATTAAATCGTCTTATATATGGGGGGAAGTGTGAAGTACATGTTAGAAGGTTATAGTGTTACa
gi|20 : aattgGTGCAGA--CCCAGTCAAGCCAGTGC--ACGGCAGTCAGGGATCACTGTCATTAGACTCtatttaaaaccataaaa
gi|9 : aacaacatttcttctctcattagtgtatgattacatttacacacatttggaacaggtagtgccaattTGTGTCCGGCTTAAACCATGCACACACCGATCTGG--ACACACACTGGCACAAGGCACAAT--GAGG---TAGCCTCGGATTTTATCATCATAATTTTGAATTTAAGCTTCTTAAATCAGGGAGGAAGTGAGAAGTACATGTCAGTACGTTATTGGGTTGCATAATCAATGAAATAGTGAATAACTATTGGTCGTTTCGCCGTG--------TAT-TTATTTGGCTAC-ATGGGG-GAAATCGTGCCA------------AGAA----TAGAATCGACAGTGGGGGATACTATTATCTACTATCAATCAATTACAACCATGTCATTGATATATTT
gi|5 : gGTGTGCAGTACATGTTAGTACGTTATCGGG-------A-CAATGA-----TGAATAATCATTGATCGGTTCGCCGTGAATGAAATAACATTATTTGGCTGC-GTGGGA-GAAATCGTGTCATGTGCACTTGCGGCAAGAA-TAGAATCTCCAATGTGGAATACTATTATATACT----ATCAATTACAACCATGTCATTGGTATAGTTGGCGGTGTAACAAGAA
gi|7 : AATGAAATAATGAATAACTATTGGTCGGCTCGCCGTGAGTGAAATTACATTATTTGGCTAC-GTTGGG-GAAATCGTGCCATGTGCACCTGCGGCAAGAA-TAGAATCAACAGATTGGAATACTATTATTTACT----ATCGATTATAACCATGTCATTGATATATTTGACGGTGTAGAAAGAAGGCGGTGTTAAGCAggcggtggtaaacaagtttacaaggaattcgttacactctttatgcgtgcaaatttgcataagttattcagttcggtttcgttttacgaggacagcacattacccaacgcatgtatatcatgagtggtcaaatgtttatttttaattaaaagtctgcgttctcattggaaatgcgggaattta
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|25 ): AATGCATAACTACATGTATAAGTATACGTGCACATTTACATTGTTAAATCAGTTCAGTTTCGTTTTGCGAGGAC
Unaligned ( gi|26 ): CATAAGGTTAATCAATTCAGGTTTGTTTTGCACATTATCTAGCGCATATATATCATGTGTGGTCAAATGTTA
Unaligned ( gi|28 ): GAACTAATATACTCGTATTATGCTATTTTAATAACGACGACTAAATAAACGT
Alignments
lowQualScore : 11111 1 2222
lowQualScore : 333 33 2 22 5 1 55555 1 2 3 2 33 1 1 33 444 2 3 55 2 55 777 4 1 4 888 0 0 1 6 1 2 6 1 1 1 1111 2 0 1 0
lowQualScore : ... .. . .. . . ..... . . . . .. . . .. ... . . .. . .. ... . . . ... . . . . . . . . . . .... . . . .
lowQualScore : 999 11 0 66 7 9 11111 9 0 6 0 11 0 8 22 444 5 0 55 4 55 000 0 0 4 888 4 1 7 7 0 2 7 0 0 0 2222 0 7 0 7
consensus : CATTTATTCTCTCATTA---CAT--TTACATGTAA-AAAT--GAGG-A-AAA--G--T-ACAAA-TATTA-TAACAGGTAGTGTTAATTGTGTTGGCTAGTCCTCTCCTATCACATCCAGTGTATA--CCCAGTCCGGTCTGCGCACGGCTGTCAATGACCATCGTCATTAGACTCT--GGC---G-TGTAGCCAGGTACTAATACCGCTGTTGTCTCCGGCTTAAACCATGCACACACCGATCTGGACACACAC--TGNCAGAAGACACAGT--GAGG---TAGCCTCGGATTTTATCATTA-TAATTTTGAATTNAAGCGTCTTAAATCAGGGAGGAAGTGTGAAGTACATGTTAGTACGTTATCGGGTTGC-AT---AATCAATGAAATAGTGAATAACTATTGGTCGGTTCGCCGTGAGTGAAATTACATTATTTGGCTACG-TNGGGGAAATCGTGCCATGTGCACTTGCGGCAAGAA-TAGAATCNACAGTGTGGAATACTATTATTTACT----ATCAATTACAACCATGTCATTGATATATTTGACGGTGTAGCAAGAAGGCGGTGTTAAACA
Reference ( family-1119 ) : CATTTATTCTCTCATTA---CAT--TTACATGTAA-AAAT--GAGG-A-AAA--G--T-ACAAA-TATTA-TAACAGGTAGTGTTAATTGTGTTGGCTAGTCCTCTCCTATCACATCCAGTGTATA--CCCAGTCCGGTCTGCGCACGGCNGTCAATGACCATCGTCATTAGACTCT--GGC---G-TGTAGCCAGGTACTAATACCGCTGTTGTCTCCGGCTTAAACCATGCACACACCGATCTGGACACACAC--TGNCAGAAGACACAGT--GAGG---TAGCCTCGGATTTTATCATTA-TAATTTTGAATTNAAGCGTCTTAAATCAGGGAGGAAGTGTGAAGTACATGTTAGTACGTTATCGGGTTGC-AT---AATCAATGAAATAGTGAATAACTATTGGTCGGTTCGCCGTGAGTGAAATTACATTATTTGGCTACG-TNGGGGAAATCGTGCCATGTGCACTTGCGGCAAGAA-TAGAATCNACAGTGNGGAATACTATTATNTACT----ATCGATTACAACCATGTCATTGATATATTTGGCGGTGTAGNAAGAAGGCGGTGTTAAGCA
gi|1 : CATTTATTCTCTCATTA---CAT--TTACATGTAA-AAAT--GAGG-A-AAA--G--T-ACAAA-TATTA-TAACAAGTAGTGTTAATTGTGTTGGCTAGTCCTCTCCTATCACATTGAGTGTATA--CCCAGTCTGGTCTGCTTATGGCTGTCATTGACCATCGTCGTAAGACTCT--GGT---G-TGTAGCCAGGTACTAATACCACCATTGTCTCCAACTTAAACCATGCACATACCAATCCGGACACTTAC--TGTCAGAAGACACAGT--GAAG---TAGCCTCGGATTTTATCATTA-TAATCTCGAATTTAAGCATCTTAAATCAGGGAGAAAGTGTGAATTACATGTTAGTACGTTATTGGGTTGC-AT---AATCAATGAAAAAGTGAATAACTATTGGTCGGTTCGCCATGAGCGAAATTACATTATTTGGCTACA-TTTGGGAAATCGTGCCATGTGCACTTGCAAGAAAAATTATAATCAACAGTGTGGAATACTATTATTTACT----ATCAATTACAACCATTTCATTGATATATTTGACGGTGTAGCAAGAATCCTGTATTTAACA
gi|10 : CATTTATTCTCTCATTA---CAT--GTACATGTAA-AAAT--AAGG-A-AAAC-G--T-ACAAA-TATTA-TAACAGTAAGTGTTAATTTTGCTGGCTAATCCTCTCCTAATACATCCAGTTCATA--CCCAGTCCGGTTTGCGCCCGGCTATCAATAACTATCGTCATTAGACTCT--CTT---G-TGTAGCC--------------CTGTTGTCTCCGGCTTAAACCATGCACACATCGATTTGGACATA--------CAGAAGACACAGT--GAGG---TAGCCGCAAATTTTATCATTA-TAATTTTGAATTGAAGCGTTTTAAATCgag
gi|11 : tatcaacagccacaattgCATTTATTCTTTCATTA---CAT--TTACATGTAA-AAAT--AAGG-A-AAAA-G--T-ACAAA-CATTA-TATCAGGTAGTGTTAATTGTGTTGGCTAGTCCTCTCCTATCACA-CCAGTGTGTA--CCCAGTCTGGTCTGCACATGGCAGTCAATGACCATTGTCTTTAAACTCT--GGC---T-TGTAGTCAGGTACTAATACCGCTGT-GTCCCTGGCTTAAACCATGCACACACCAATCTGGACACACAC--TGGCAGAAGACACAGT--GAGG---TAACCTTGGATTTTATCATTATTGAGTTTGA
gi|12 : aacaacaaaaacaattaTG-TAATAGGTAGTGTAAGTTGTGTTGGCTGGTCCTCTCCTATCAGATCCAGTGTAGA--CCCAGTCCGGTCAGCGCATGGCAGTCAAGGACCATCA----------CG--GG-------ATAGCCAAGTACCAATACAGCTGT-GCCCGCGGCATGAAACATGTACACACTGATCTGGACAAACAC--TGACAGAAATCGCGAT--GAGG---TAAGCTTGAATTTTATCATTA-TAATTGTGAATTAAATCGTCTTATATATGGGGGGAAGTGTGAAGTACATGTTAGAAGGTTATAGTGTTAC-
gi|13 : aattgCATTTAATCTCAAATCA---TAT--TTACAT-CAATAAAT--GAGT-A-GAA--G----ACAAA-T-TTAGTGTCTGATAATGCCTGGTACGTTGGCTGGTCGCCCTCTATCAGATCCATTAAAGA--TCCAGCCCGGCCAGCGAATGGCAATTAGGGATCACCGTCATTAGACTCT--GGCGGAG-TTCAGCCAGCTACGAATACCGCTGTtatttaaaaccataaaa
gi|14 : acagcaacgatcacaacactaaCATTTATTCTCGCATTA---CAT--TTACATGTAA-AAAT--GAGA-A-AAAAAG--T-ACAAA-TATTA-TAACAGGTAGTGTTAAT-GTGTTGGCTGGTCCTCTCCCTTCACATCCAGTGTATA--CCCAGTCTGGTCTGC-CACGGCTGTCAGTGACCATTGTCATAAGACTCTGCGAC---GATGTGGCCAGGTACTAATatcactg
gi|15 : aaacaacaacaaaaattaTTATTCTCTCATTA---CAT--TTACATGTAA-AAAT--GAGG-A-AAA--G--T-ACAAA-TATTA-TAACAGGTAGTGTTAATTGTGTTGGCTAGTCCTCTCCTATCACATCCAGTGTATA--CCCAGTCCGATCTGTACACGGCTGCCAATGACCATCGTCATTAGACTCT--GGC---G-TGTAG
gi|16 : caacagcaacaacaacaacaacaCATTTATTTTCTCATTA---CAT--TTACATGCAA-AAAT--GAGG-A-AAAA-G--T-ACAAA-TATTA-TAACAGGTAGTGTTAATTATGTTGGCTAGTCCTCTCTTATCACATCCAGTGTATA--CCCAGTCCGGTTTGCGCACGGCTGTCAATGACCATCGT-ATTAGACTCT--GGC---G-TGTAG
gi|17 : caacaatacaacaacaactaTTATTCTTTCATTA---CAT--TACCATGTGA-AAAT--GAGG-A-AAAA-G--T-GCAAA-TATTA-TAACAGGTAGCGTTAATTGT--TGACTAGTACTCTCCTGTCACATCCAGTGTATA--CCCAGTCTGGTCAGAGCACGGCTGCCAATGATCATCGTCATAAGA--CT--GAC---G-TGTAGTCAGGTACTAATACCGCTGT
gi|18 : TTTATTCTCTCATTA---CAT--TTACATGTAA-AAAT--GAGG-A-AAA--A--TTACAAA-TTTTA-TAACTGATAGTGTTAATTGTGTTGGCTAGTTCTCTACTGCCACA----GTGTATA--CCCAGTCCGGTCTGCGCACGGCTGTCAGTGACCATCGTCATTAGGCTCT--GGC---G-TGTAGCCAGGTACatccg
gi|19 : CATGTAA-AAAT--GAGGGA-AAA--G--C-ACAAA-TATTA-TAACAGGTAGTGTTAATTGTGTTGACTAGTCCTCTCCTATCACATCCAGTGTATA--TCCAGTCCAGTCTGCGCACGGCTGTCAATGACCGTCGTCATTAGTCTCT--GGC---G-TGCAGCCAGGTACTTATACTGTT
gi|2 : CATTTATTCTCTCATTA---CAT--TTACATGTTA-AAAT--GAGG-A-AAAA-G--T-TTAAA-TATTA-TAACAGGTAGTGTTAATTGTGTTGGTCAGTCCTCTCCTATCACATCGAGTGTATA--CTCAGTCCGGTCTGAGCATGGCTGTCAATGACCATCGTCATTAGAATCT--CGC---A-TGTAGCCAGGTACTAATACCGCCGTTGTCTCCTGCTTAAACCATGCACACGACGATCTGGACACACAC--TGTCAGAAGACACAGT--GAGG---TAGCCTTGGATTTTATCATTA-TAACCTTGAATTTAAGTGTCTAAAATCAGGGATGAAGTTTGAAGTACAT--------GTTATCGGGTTGC-AT---AATCAATGAAATAGCGAATAACTATTGGTCAGTTTGTTGTGAGTGAAATTACATTATTTGGCTACATTTGGTAAAATTGTGCCATGTGCACTTGCAGCAAGAA-TATAATCTACAGTGGGGAATACTATTA
gi|20 : caacaacaacaattaCATTTCTTCTCTCATTAGTGTATGATTACATTTA-----------------------C-ACACA-T-TTG-GAACAGGTAGTGCCAATTGTG-------------------CAGACCCAGT---------CAAGCCAGT----GCACGGCAGTCAGGGATCACTGTCATTAGACTC
gi|22 : aacaaCATTTATTCTCTCATTA---CCT--TAACATGTAA-AA-T--GAGGGA-AAA--G--A-ACAAAATTTTA-TAACAAGTAGTGTTAATTGTGTTGGCTTGTACTCTC
gi|23 : tacaacagcaactacatttcAA-AAAT--GAAG-A-AAA--A--T-A------------GACAGGTAGTATCAATTGTGTTGGCTGGTCCTCTCCTATCACATTCAGTGTAGA--CCCAGTCCGGTCAGCG----------------CATCGTCATTAGGCTCT--G
gi|24 : CATTTATTCTCTCATTA---CAT--TTATATG-AA-AAAT--TAAG-ACAAA--A--T-TCAAC-TTTTA-TAACAGTTAGTGTTAATTGTGTTGGCTA
gi|27 : ataacaacaacaataacgaTTATTCTCTCATTA---CAT--TTACATGTAA-AAATTGGGGG-A-AAA--A--T-ACAAA-TAT
gi|29 : ataacaacaataacaTCTCATTA---CAT--TTACATGTAA-AAAT--GAGGAA-AAA--G--T-ATAAaa
gi|3 : taCATTTATTCTCTCATTT---CAT--TAACATG-GA-AAAT--GAGG-A-AAA--AAAT-ACAAA-TTTTA-TAACAGGTAGTGTTATTTGTGATGGCTAGTCCTCTCCTGTCACATCCAGTGTATATACCCAGTCAGGTCTGCGCACGGCTGTCAATGACCATCGTCATTAGACTCT--GGC---G-TGTTGCCAGGTGCT------------GTCTCCAGCTTAAACCATGCACACGCCGATCTGGACACACACACTGTCAGAAGACACTGTCAGAAGACACAGCCTCGGATTTTATCGTTA-TAATCTTGAATTTAAGCGTCTTTAATCAGGGAGGAACTGTTAAATGCATATTAGTACTTTATCGGGTTGC-AT---AATCAATAAAATAGTGAATAACTATTGGTCGGTTCGCAGTGGATGAAATTACATtt
gi|4 : acaacatcaacaacaatta--GAGG-A-AAA--AA-T-ACAAA-TATTA-TAACAGGTAGTATTAATTGTGTTGGCTAGTCCTCTCCTACCACATCCAGTGTATA--CTCAGTC-----TGTGCATGACAGTCAATGACCATTGTCATTAGACT----GAT---G-TGTAGCCAGGAACTAATACCACTGT-GTCTCCGGCTTGAACCATGCACACACTGATCTGGACATACAC--TGGCAGAAGACACAGT--GATG---TAGCCTTAGATTTTATCATTA-TAATTTTGAATTAAAGCATCTTAAATCAAGGAG-------AAAGTACATGTTAGTACGTTATCGGGTTGC-AT---AATCAATGAAATAGTGAATAATTATTGGTCCGTTCGCTGTGAGTGAAATTACATTATTTGGCT--G-TGATAGAAATTGTGCCATGTGCACTTGCAGCAATAA-TA
gi|5 : gtataaatgtctgaGTGTGCAGTACATGTTAGTACGTTATCGGG-----------A-CAATGA-----TGAATAATCATTGATCGGTTCGCCGTGAATGAAATAACATTATTTGGCTGCG-TGGGAGAAATCGTGTCATGTGCACTTGCGGCAAGAA-TAGAATCTCCAATGTGGAATACTATTATATACT----ATCAATTACAACCATGTCATTGGTATAGTTGGCGGTGTAACAAGAAGGCGGTGGTAAACA
gi|6 : CATTTATTCTCTCGTTA---TAT--TTACATGTAG-AAAT--GAGG-A-AAAA-G--T-ACAAA-TATTA-TAACAGATAGTGTTAATTGTGTTGGCTAGATCTCTCCTATCACATCCGGTGTATG--CCCAGTCCGGTAAACGCACAGCAGTCAATGACCATCGTCATTAGACTCT--GAC---T-GGTAGCCAGGTACTAATACCGCTG-TATCTCAGGCTTAAACTATGCACACACCGATCTGGACACACAC--TGTCAGAAGACACAGT--GAAG---TAGCCTCGGA-TTAATCATTA-TATTTTTGAATTTAAGCGTTTTAAATCAGGGAGGAAGTGTGAAGTACACGTTAGTACGTTATCGGGTGGC-AT---AATCAATGAAATagtttacaaggaattcgttacactctttatgcgtgcaaatttgcataagttattcagttcggtttcgttttacgaggacagcacattacccaacgcatgtatatcatgagtggtcaaatgtttatttttaattaaaagtctgcgttctcattggaaatgcgggaattta
gi|7 : acaacagcaacaattaAATGAAATAATGAATAACTATTGGTCGGCTCGCCGTGAGTGAAATTACATTATTTGGCTACG-TTGGGGAAATCGTGCCATGTGCACCTGCGGCAAGAA-TAGAATCAACAGATTGGAATACTATTATTTACT----ATCGATTATAACCATGTCATTGATATATTTGACGGTGTAGAAAGAAGGCGGTGTTAAGCA
gi|8 : CATTTATTATCTCATTA---CAT--TTACATGTCA-AAAA--CAGG-A-ACA--A--T-ACGAA-TTGTG-TAATAGGTAGTGTAAGTTGTGTTGGCTGGTCCTCTCCTATCAGATCCAGTGTAGA--CCCAGTCCGGTCAGCGCATGGCAGTCAAGGACCATCA----------CG--GG-------ATAGCCAAGTACCAATACAGCTGT-GCCCGCGGCATGAAACATGTACACACTGATCTGGACAAACAC--TGACAGAAATCGCGAT--AAGG---TAAGCTTGAATTTTATCATTA-TAATTGTGAATTAAATCGTCTTATATATGGGGGGAAGTGTGAAGTACATGTTAGAAGGTTATAGTGTTACTATTTAAAACCATAAAATtgtttgtaaagaatgaattacactcttttataagtatgcgtgcatatttgcataagttgattagttcggtttcgtttttggaggacaaaacattatgcatcgcatgtataacatgtatggtaaaatgtttttttttatttaaaagtctgggctctcgttgaaagtgtgagcatctaa
gi|9 : caaaaacaacaacaatagTGTGTCCGGCTTAAACCATGCACACACCGATCTGGACACACAC--TGGCACAAGGCACAAT--GAGG---TAGCCTCGGATTTTATCATCA-TAATTTTGAATTTAAGCTTCTTAAATCAGGGAGGAAGTGAGAAGTACATGTCAGTACGTTATTGGGTTGC-AT---AATCAATGAAATAGTGAATAACTATTGGTCGTTTCGCCGTG--------TAT-TTATTTGGCTACA-TGGGGGAAATCGTGC---------------CAAGAA-TAGAATCGACAGTGGGGGATACTATTATCTACTATCAATCAATTACAACCATGTCATTGATATATTT
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): CAACATCAACAACAACACTAGCATCTATTCTCATTAATCATGAGGACAAAATGCACATTTTAGTATATAAAAGTGTCAATTGTGTTAGCCATTCAAATTTCATATCAACATTGGCATATGC
Unaligned ( gi|25 ): AATGCATAACTACATGTATAAGTATACGTGCACATTTACATTGTTAAATCAGTTCAGTTTCGTTTTGCGAGGAC
Unaligned ( gi|26 ): CATAAGGTTAATCAATTCAGGTTTGTTTTGCACATTATCTAGCGCATATATATCATGTGTGGTCAAATGTTA
Unaligned ( gi|28 ): GAACTAATATACTCGTATTATGCTATTTTAATAACGACGACTAAATAAACGT
Alignments
lowQualScore : 11111 1 2222
lowQualScore : 333 33 2 22 5 1 55555 1 2 3 2 33 1 2 33 444 2 3 55 2 55 777 4 1 4 888 0 0 1 6 1 2 6 1 0 1 1111
lowQualScore : ... .. . .. . . ..... . . . . .. . . .. ... . . .. . .. ... . . . ... . . . . . . . . . . ....
lowQualScore : 999 11 0 66 7 9 11111 9 0 6 0 11 0 4 22 444 5 0 55 4 55 000 0 0 4 888 4 1 7 7 0 2 7 0 6 2 2222
consensus : CATTTATTCTCTCATTA---CAT--TTACATGTAA-AAAT--GAGG-A-AAA--G--T-ACAAA-TATTA-TAACAGGTAGTGTTAATTGTGTTGGCTAGTCCTCTCCTATCACATCCAGTGTATA--CCCAGTCCGGTCTGCGCACGGCTGTCAATGACCATCGTCATTAGACTCT--GGC---G-TGTAGCCAGGTACTAATACCGCTGTTGTCTCCGGCTTAAACCATGCACACACCGATCTGGACACACAC--TGNCAGAAGACACAGT--GAGG---TAGCCTCGGATTTTATCATTA-TAATTTTGAATTNAAGCGTCTTAAATCAGGGAGGAAGTGTGAAGTACATGTTAGTACGTTATCGGGTTGC-AT---AATCAATGAAATAGTGAATAACTATTGGTCGGTTCGCCGTGAGTGAAATTACATTATTTGGCTACG-TNGGGGAAATCGTGCCATGTGCACTTGCGGCAAGAA-TAGAATCNACAGTGTGGAATACTATTATTTACT----ATCAATTACAACCATGTCATTGATATATTTGACGGTGTAGCAAGAAGGCGGTGTTAAACA
Reference ( family-1119 ) : CATTTATTCTCTCATTA---CAT--TTACATGTAA-AAAT--GAGG-A-AAA--G--T-ACAAA-TATTA-TAACAGGTAGTGTTAATTGTGTTGGCTAGTCCTCTCCTATCACATCCAGTGTATA--CCCAGTCCGGTCTGCGCACGGCTGTCAATGACCATCGTCATTAGACTCT--GGC---G-TGTAGCCAGGTACTAATACCGCTGTTGTCTCCGGCTTAAACCATGCACACACCGATCTGGACACACAC--TGNCAGAAGACACAGT--GAGG---TAGCCTCGGATTTTATCATTA-TAATTTTGAATTNAAGCGTCTTAAATCAGGGAGGAAGTGTGAAGTACATGTTAGTACGTTATCGGGTTGC-AT---AATCAATGAAATAGTGAATAACTATTGGTCGGTTCGCCGTGAGTGAAATTACATTATTTGGCTACG-TNGGGGAAATCGTGCCATGTGCACTTGCGGCAAGAA-TAGAATCNACAGTGTGGAATACTATTATTTACT----ATCAATTACAACCATGTCATTGATATATTTGACGGTGTAGCAAGAAGGCGGTGTTAAACA
gi|1 : CATTTATTCTCTCATTA---CAT--TTACATGTAA-AAAT--GAGG-A-AAA--G--T-ACAAA-TATTA-TAACAAGTAGTGTTAATTGTGTTGGCTAGTCCTCTCCTATCACATTGAGTGTATA--CCCAGTCTGGTCTGCTTATGGCTGTCATTGACCATCGTCGTAAGACTCT--GGT---G-TGTAGCCAGGTACTAATACCACCATTGTCTCCAACTTAAACCATGCACATACCAATCCGGACACTTAC--TGTCAGAAGACACAGT--GAAG---TAGCCTCGGATTTTATCATTA-TAATCTCGAATTTAAGCATCTTAAATCAGGGAGAAAGTGTGAATTACATGTTAGTACGTTATTGGGTTGC-AT---AATCAATGAAAAAGTGAATAACTATTGGTCGGTTCGCCATGAGCGAAATTACATTATTTGGCTACA-TTTGGGAAATCGTGCCATGTGCACTTGCAAGAAAAATTATAATCAACAGTGTGGAATACTATTATTTACT----ATCAATTACAACCATTTCATTGATATATTTGACGGTGTAGCAAGAATCCTGTATTTAACA
gi|10 : CATTTATTCTCTCATTA---CAT--GTACATGTAA-AAAT--AAGG-A-AAAC-G--T-ACAAA-TATTA-TAACAGTAAGTGTTAATTTTGCTGGCTAATCCTCTCCTAATACATCCAGTTCATA--CCCAGTCCGGTTTGCGCCCGGCTATCAATAACTATCGTCATTAGACTCT--CTT---G-TGTAGCC--------------CTGTTGTCTCCGGCTTAAACCATGCACACATCGATTTGGACATA--------CAGAAGACACAGT--GAGG---TAGCCGCAAATTTTATCATTA-TAATTTTGAATTGAAGCGTTTTAAATCgag
gi|11 : tatcaacagccacaattgCATTTATTCTTTCATTA---CAT--TTACATGTAA-AAAT--AAGG-A-AAAA-G--T-ACAAA-CATTA-TATCAGGTAGTGTTAATTGTGTTGGCTAGTCCTCTCCTATCACA-CCAGTGTGTA--CCCAGTCTGGTCTGCACATGGCAGTCAATGACCATTGTCTTTAAACTCT--GGC---T-TGTAGTCAGGTACTAATACCGCTGT-GTCCCTGGCTTAAACCATGCACACACCAATCTGGACACACAC--TGGCAGAAGACACAGT--GAGG---TAACCTTGGATTTTATCATTATTGAGTTTGA
gi|12 : aacaacaaaaacaattaTG-TAATAGGTAGTGTAAGTTGTGTTGGCTGGTCCTCTCCTATCAGATCCAGTGTAGA--CCCAGTCCGGTCAGCGCATGGCAGTCAAGGACCATCA----------CG--GG-------ATAGCCAAGTACCAATACAGCTGT-GCCCGCGGCATGAAACATGTACACACTGATCTGGACAAACAC--TGACAGAAATCGCGAT--GAGG---TAAGCTTGAATTTTATCATTA-TAATTGTGAATTAAATCGTCTTATATATGGGGGGAAGTGTGAAGTACATGTTAGAAGGTTATAGTGTTAC-
gi|13 : aattgCATTTAATCTCAAATCA---TAT--TTACAT-CAATAAAT--GAGT-A-GAA--G----ACAAA-T-TTAGTGTCTGATAATGCCTGGTACGTTGGCTGGTCGCCCTCTATCAGATCCATTAAAGA--TCCAGCCCGGCCAGCGAATGGCAATTAGGGATCACCGTCATTAGACTCT--GGCGGAG-TTCAGCCAGCTACGAATACCGCTGTtatttaaaaccataaaa
gi|14 : acagcaacgatcacaacactaaCATTTATTCTCGCATTA---CAT--TTACATGTAA-AAAT--GAGA-A-AAAAAG--T-ACAAA-TATTA-TAACAGGTAGTGTTAAT-GTGTTGGCTGGTCCTCTCCCTTCACATCCAGTGTATA--CCCAGTCTGGTCTGC-CACGGCTGTCAGTGACCATTGTCATAAGACTCTGCGAC---GATGTGGCCAGGTACTAATatcactg
gi|15 : aaacaacaacaaaaattaTTATTCTCTCATTA---CAT--TTACATGTAA-AAAT--GAGG-A-AAA--G--T-ACAAA-TATTA-TAACAGGTAGTGTTAATTGTGTTGGCTAGTCCTCTCCTATCACATCCAGTGTATA--CCCAGTCCGATCTGTACACGGCTGCCAATGACCATCGTCATTAGACTCT--GGC---G-TGTAG
gi|16 : caacagcaacaacaacaacaacaCATTTATTTTCTCATTA---CAT--TTACATGCAA-AAAT--GAGG-A-AAAA-G--T-ACAAA-TATTA-TAACAGGTAGTGTTAATTATGTTGGCTAGTCCTCTCTTATCACATCCAGTGTATA--CCCAGTCCGGTTTGCGCACGGCTGTCAATGACCATCGT-ATTAGACTCT--GGC---G-TGTAG
gi|17 : caacaatacaacaacaactaTTATTCTTTCATTA---CAT--TACCATGTGA-AAAT--GAGG-A-AAAA-G--T-GCAAA-TATTA-TAACAGGTAGCGTTAATTGT--TGACTAGTACTCTCCTGTCACATCCAGTGTATA--CCCAGTCTGGTCAGAGCACGGCTGCCAATGATCATCGTCATAAGA--CT--GAC---G-TGTAGTCAGGTACTAATACCGCTGT
gi|18 : TTTATTCTCTCATTA---CAT--TTACATGTAA-AAAT--GAGG-A-AAA--A--TTACAAA-TTTTA-TAACTGATAGTGTTAATTGTGTTGGCTAGTTCTCTACTGCCACA----GTGTATA--CCCAGTCCGGTCTGCGCACGGCTGTCAGTGACCATCGTCATTAGGCTCT--GGC---G-TGTAGCCAGGTACatccg
gi|19 : CATGTAA-AAAT--GAGGGA-AAA--G--C-ACAAA-TATTA-TAACAGGTAGTGTTAATTGTGTTGACTAGTCCTCTCCTATCACATCCAGTGTATA--TCCAGTCCAGTCTGCGCACGGCTGTCAATGACCGTCGTCATTAGTCTCT--GGC---G-TGCAGCCAGGTACTTATACTGTT
gi|2 : CATTTATTCTCTCATTA---CAT--TTACATGTTA-AAAT--GAGG-A-AAAA-G--T-TTAAA-TATTA-TAACAGGTAGTGTTAATTGTGTTGGTCAGTCCTCTCCTATCACATCGAGTGTATA--CTCAGTCCGGTCTGAGCATGGCTGTCAATGACCATCGTCATTAGAATCT--CGC---A-TGTAGCCAGGTACTAATACCGCCGTTGTCTCCTGCTTAAACCATGCACACGACGATCTGGACACACAC--TGTCAGAAGACACAGT--GAGG---TAGCCTTGGATTTTATCATTA-TAACCTTGAATTTAAGTGTCTAAAATCAGGGATGAAGTTTGAAGTACAT--------GTTATCGGGTTGC-AT---AATCAATGAAATAGCGAATAACTATTGGTCAGTTTGTTGTGAGTGAAATTACATTATTTGGCTACATTTGGTAAAATTGTGCCATGTGCACTTGCAGCAAGAA-TATAATCTACAGTGGGGAATACTATTA
gi|20 : caacaacaacaattaCATTTCTTCTCTCATTAGTGTATGATTACATTTA-----------------------C-ACACA-T-TTG-GAACAGGTAGTGCCAATTGTG-------------------CAGACCCAGT---------CAAGCCAGT----GCACGGCAGTCAGGGATCACTGTCATTAGACTC
gi|22 : aacaaCATTTATTCTCTCATTA---CCT--TAACATGTAA-AA-T--GAGGGA-AAA--G--A-ACAAAATTTTA-TAACAAGTAGTGTTAATTGTGTTGGCTTGTACTCTC
gi|23 : tacaacagcaactacatttcAA-AAAT--GAAG-A-AAA--A--T-A------------GACAGGTAGTATCAATTGTGTTGGCTGGTCCTCTCCTATCACATTCAGTGTAGA--CCCAGTCCGGTCAGCG----------------CATCGTCATTAGGCTCT--G
gi|24 : CATTTATTCTCTCATTA---CAT--TTATATG-AA-AAAT--TAAG-ACAAA--A--T-TCAAC-TTTTA-TAACAGTTAGTGTTAATTGTGTTGGCTA
gi|27 : ataacaacaacaataacgaTTATTCTCTCATTA---CAT--TTACATGTAA-AAATTGGGGG-A-AAA--A--T-ACAAA-TAT
gi|29 : ataacaacaataacaTCTCATTA---CAT--TTACATGTAA-AAAT--GAGGAA-AAA--G--T-ATAAaa
gi|3 : taCATTTATTCTCTCATTT---CAT--TAACATG-GA-AAAT--GAGG-A-AAA--AAAT-ACAAA-TTTTA-TAACAGGTAGTGTTATTTGTGATGGCTAGTCCTCTCCTGTCACATCCAGTGTATATACCCAGTCAGGTCTGCGCACGGCTGTCAATGACCATCGTCATTAGACTCT--GGC---G-TGTTGCCAGGTGCT------------GTCTCCAGCTTAAACCATGCACACGCCGATCTGGACACACACACTGTCAGAAGACACTGTCAGAAGACACAGCCTCGGATTTTATCGTTA-TAATCTTGAATTTAAGCGTCTTTAATCAGGGAGGAACTGTTAAATGCATATTAGTACTTTATCGGGTTGC-AT---AATCAATAAAATAGTGAATAACTATTGGTCGGTTCGCAGTGGATGAAATTACATtt
gi|4 : acaacatcaacaacaatta--GAGG-A-AAA--AA-T-ACAAA-TATTA-TAACAGGTAGTATTAATTGTGTTGGCTAGTCCTCTCCTACCACATCCAGTGTATA--CTCAGTC-----TGTGCATGACAGTCAATGACCATTGTCATTAGACT----GAT---G-TGTAGCCAGGAACTAATACCACTGT-GTCTCCGGCTTGAACCATGCACACACTGATCTGGACATACAC--TGGCAGAAGACACAGT--GATG---TAGCCTTAGATTTTATCATTA-TAATTTTGAATTAAAGCATCTTAAATCAAGGAG-------AAAGTACATGTTAGTACGTTATCGGGTTGC-AT---AATCAATGAAATAGTGAATAATTATTGGTCCGTTCGCTGTGAGTGAAATTACATTATTTGGCT--G-TGATAGAAATTGTGCCATGTGCACTTGCAGCAATAA-TA
gi|5 : gtataaatgtctgaGTGTGCAGTACATGTTAGTACGTTATCGGG-----------A-CAATGA-----TGAATAATCATTGATCGGTTCGCCGTGAATGAAATAACATTATTTGGCTGCG-TGGGAGAAATCGTGTCATGTGCACTTGCGGCAAGAA-TAGAATCTCCAATGTGGAATACTATTATATACT----ATCAATTACAACCATGTCATTGGTATAGTTGGCGGTGTAACAAGAAGGCGGTGGTAAACA
gi|6 : CATTTATTCTCTCGTTA---TAT--TTACATGTAG-AAAT--GAGG-A-AAAA-G--T-ACAAA-TATTA-TAACAGATAGTGTTAATTGTGTTGGCTAGATCTCTCCTATCACATCCGGTGTATG--CCCAGTCCGGTAAACGCACAGCAGTCAATGACCATCGTCATTAGACTCT--GAC---T-GGTAGCCAGGTACTAATACCGCTG-TATCTCAGGCTTAAACTATGCACACACCGATCTGGACACACAC--TGTCAGAAGACACAGT--GAAG---TAGCCTCGGA-TTAATCATTA-TATTTTTGAATTTAAGCGTTTTAAATCAGGGAGGAAGTGTGAAGTACACGTTAGTACGTTATCGGGTGGC-AT---AATCAATGAAATagtttacaaggaattcgttacactctttatgcgtgcaaatttgcataagttattcagttcggtttcgttttacgaggacagcacattacccaacgcatgtatatcatgagtggtcaaatgtttatttttaattaaaagtctgcgttctcattggaaatgcgggaattta
gi|7 : acaacagcaacaattaAATGAAATAATGAATAACTATTGGTCGGCTCGCCGTGAGTGAAATTACATTATTTGGCTACG-TTGGGGAAATCGTGCCATGTGCACCTGCGGCAAGAA-TAGAATCAACAGATTGGAATACTATTATTTACT----ATCGATTATAACCATGTCATTGATATATTTGACGGTGTAGAAAGAAGGCGGTGTTAAGCA
gi|8 : CATTTATTATCTCATTA---CAT--TTACATGTCA-AAAA--CAGG-A-ACA--A--T-ACGAA-TTGTG-TAATAGGTAGTGTAAGTTGTGTTGGCTGGTCCTCTCCTATCAGATCCAGTGTAGA--CCCAGTCCGGTCAGCGCATGGCAGTCAAGGACCATCA----------CG--GG-------ATAGCCAAGTACCAATACAGCTGT-GCCCGCGGCATGAAACATGTACACACTGATCTGGACAAACAC--TGACAGAAATCGCGAT--AAGG---TAAGCTTGAATTTTATCATTA-TAATTGTGAATTAAATCGTCTTATATATGGGGGGAAGTGTGAAGTACATGTTAGAAGGTTATAGTGTTACTATTTAAAACCATAAAATtgtttgtaaagaatgaattacactcttttataagtatgcgtgcatatttgcataagttgattagttcggtttcgtttttggaggacaaaacattatgcatcgcatgtataacatgtatggtaaaatgtttttttttatttaaaagtctgggctctcgttgaaagtgtgagcatctaa
gi|9 : caaaaacaacaacaatagTGTGTCCGGCTTAAACCATGCACACACCGATCTGGACACACAC--TGGCACAAGGCACAAT--GAGG---TAGCCTCGGATTTTATCATCA-TAATTTTGAATTTAAGCTTCTTAAATCAGGGAGGAAGTGAGAAGTACATGTCAGTACGTTATTGGGTTGC-AT---AATCAATGAAATAGTGAATAACTATTGGTCGTTTCGCCGTG--------TAT-TTATTTGGCTACA-TGGGGGAAATCGTGC---------------CAAGAA-TAGAATCGACAGTGGGGGATACTATTATCTACTATCAATCAATTACAACCATGTCATTGATATATTT
blockSeqs : GTG GA T TG G C AAG T A A G TA T T GC GGA A T AC G CA ACA T G T TTA A T T A . T A ATCA
blockSeqs : . . . . G . AAA . . A . . T A . . . T . A . . . A . . G . G A . T T .
blockSeqs : . . . . A . CG . . A . . A A . . . T . T . . . T . . A . G G . A C .
blockSeqs : . . . . . . AG . . A . . A A . . . T . T . . . T . . A . T G . G
blockSeqs : . . . . . . AG . . A . . T T . . . . . G . . . A . . . . G . .
blockSeqs : . . . . . . AG . . A . . T T . . . . . T . . . T . .
blockSeqs : . . . . . . AG . . T . . T T . . . . . A . . . A . .
blockSeqs : . . . . . . AA . . A . . A T . . . . . G . . . T .
blockSeqs : . . . . . . AG . . A . . T T . . . . . . . . .
blockSeqs : . . . . . . G . . T . . T T . . .
blockSeqs : . . . . . . G . . T . . T T . . .
blockSeqs : . . . . . . A . . A . . A A . . .
blockSeqs : . . . . . . G . . T . . T T . . .
blockSeqs : . . . . . . G . . A . . T A . . .
blockSeqs : . . . . . . A . . A . . A A . . .
blockSeqs : . . . . . . A . . T . . A A .
blockSeqs : . . . . . . A . . . . . . .
blockSeqs : . . . . G . . . .
blockSeqs : . . . . A . . . .
blockSeqs : . . . . .
blockSeqCons :
originalCons : CATTTATTCTCTCATTA---CAT--TTACATGTAA-AAAT--GAGG-A-AAA--G--T-ACAAA-TATTA-TAACAGGTAGTGTTAATTGTGTTGGCTAGTCCTCTCCTATCACATCCAGTGTATA--CCCAGTCCGGTCTGCGCACGGCTGTCAATGACCATCGTCATTAGACTCT--GGC---G-TGTAGCCAGGTACTAATACCGCTGTTGTCTCCGGCTTAAACCATGCACACACCGATCTGGACACACAC--TGNCAGAAGACACAGT--GAGG---TAGCCTCGGATTTTATCATTA-TAATTTTGAATTNAAGCGTCTTAAATCAGGGAGGAAGTGTGAAGTACATGTTAGTACGTTATCGGGTTGC-AT---AATCAATGAAATAGTGAATAACTATTGGTCGGTTCGCCGTGAGTGAAATTACATTATTTGGCTACG-TNGGGGAAATCGTGCCATGTGCACTTGCGGCAAGAA-TAGAATCNACAGTGTGGAATACTATTATTTACT----ATCAATTACAACCATGTCATTGATATATTTGACGGTGTAGCAAGAAGGCGGTGTTAAACA
finalCons : CATTTATTCTCTCATTA---CAT--TTACATGTAA-AAAT--GAGG-A-AAA--G--T-ACAAA-TATTA-TAACAGGTAGTGTTAATTGTGTTGGCTAGTCCTCTCCTATCACATCCAGTGTATA--CCCAGTCCGGTCTGCGCACGGCTGTCAATGACCATCGTCATTAGACTCT--GGC---G-TGTAGCCAGGTACTAATACCGCTGTTGTCTCCGGCTTAAACCATGCACACACCGATCTGGACACACAC--TGNCAGAAGACACAGT--GAGG---TAGCCTCGGATTTTATCATTA-TAATTTTGAATTNAAGCGTCTTAAATCAGGGAGGAAGTGTGAAGTACATGTTAGTACGTTATCGGGTTGC-AT---AATCAATGAAATAGTGAATAACTATTGGTCGGTTCGCCGTGAGTGAAATTACATTATTTGGCTACG-TNGGGGAAATCGTGCCATGTGCACTTGCGGCAAGAA-TAGAATCNACAGTGTGGAATACTATTATTTACT----ATCAATTACAACCATGTCATTGATATATTTGACGGTGTAGCAAGAAGGCGGTGTTAAACA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): CAACATCAACAACAACACTAGCATCTATTCTCATTAATCATGAGGACAAAATGCACATTTTAGTATATAAAAGTGTCAATTGTGTTAGCCATTCAAATTTCATATCAACATTGGCATATGC
Unaligned ( gi|25 ): AATGCATAACTACATGTATAAGTATACGTGCACATTTACATTGTTAAATCAGTTCAGTTTCGTTTTGCGAGGAC
Unaligned ( gi|26 ): CATAAGGTTAATCAATTCAGGTTTGTTTTGCACATTATCTAGCGCATATATATCATGTGTGGTCAAATGTTA
Unaligned ( gi|28 ): GAACTAATATACTCGTATTATGCTATTTTAATAACGACGACTAAATAAACGT
Alignments
lowQualScore : 11111 1 2222
lowQualScore : 333 33 2 22 5 1 55555 1 2 3 2 33 1 2 33 444 2 3 55 2 55 777 4 1 4 888 0 0 1 6 1 2 6 1 0 1 1111
lowQualScore : ... .. . .. . . ..... . . . . .. . . .. ... . . .. . .. ... . . . ... . . . . . . . . . . ....
lowQualScore : 999 11 0 66 7 9 11111 9 0 6 0 11 0 4 22 444 5 0 55 4 55 000 0 0 4 888 4 1 7 7 0 2 7 0 6 2 2222
consensus : CATTTATTCTCTCATTA---CAT--TTACATGTAA-AAAT--GAGG-A-AAA--G--T-ACAAA-TATTA-TAACAGGTAGTGTTAATTGTGTTGGCTAGTCCTCTCCTATCACATCCAGTGTATA--CCCAGTCCGGTCTGCGCACGGCTGTCAATGACCATCGTCATTAGACTCT--GGC---G-TGTAGCCAGGTACTAATACCGCTGTTGTCTCCGGCTTAAACCATGCACACACCGATCTGGACACACAC--TGNCAGAAGACACAGT--GAGG---TAGCCTCGGATTTTATCATTA-TAATTTTGAATTNAAGCGTCTTAAATCAGGGAGGAAGTGTGAAGTACATGTTAGTACGTTATCGGGTTGC-AT---AATCAATGAAATAGTGAATAACTATTGGTCGGTTCGCCGTGAGTGAAATTACATTATTTGGCTACG-TNGGGGAAATCGTGCCATGTGCACTTGCGGCAAGAA-TAGAATCNACAGTGTGGAATACTATTATTTACT----ATCAATTACAACCATGTCATTGATATATTTGACGGTGTAGCAAGAAGGCGGTGTTAAACA
Reference ( family-1119 ) : CATTTATTCTCTCATTA---CAT--TTACATGTAA-AAAT--GAGG-A-AAA--G--T-ACAAA-TATTA-TAACAGGTAGTGTTAATTGTGTTGGCTAGTCCTCTCCTATCACATCCAGTGTATA--CCCAGTCCGGTCTGCGCACGGCTGTCAATGACCATCGTCATTAGACTCT--GGC---G-TGTAGCCAGGTACTAATACCGCTGTTGTCTCCGGCTTAAACCATGCACACACCGATCTGGACACACAC--TGNCAGAAGACACAGT--GAGG---TAGCCTCGGATTTTATCATTA-TAATTTTGAATTNAAGCGTCTTAAATCAGGGAGGAAGTGTGAAGTACATGTTAGTACGTTATCGGGTTGC-AT---AATCAATGAAATAGTGAATAACTATTGGTCGGTTCGCCGTGAGTGAAATTACATTATTTGGCTACG-TNGGGGAAATCGTGCCATGTGCACTTGCGGCAAGAA-TAGAATCNACAGTGTGGAATACTATTATTTACT----ATCAATTACAACCATGTCATTGATATATTTGACGGTGTAGCAAGAAGGCGGTGTTAAACA
gi|1 : CATTTATTCTCTCATTA---CAT--TTACATGTAA-AAAT--GAGG-A-AAA--G--T-ACAAA-TATTA-TAACAAGTAGTGTTAATTGTGTTGGCTAGTCCTCTCCTATCACATTGAGTGTATA--CCCAGTCTGGTCTGCTTATGGCTGTCATTGACCATCGTCGTAAGACTCT--GGT---G-TGTAGCCAGGTACTAATACCACCATTGTCTCCAACTTAAACCATGCACATACCAATCCGGACACTTAC--TGTCAGAAGACACAGT--GAAG---TAGCCTCGGATTTTATCATTA-TAATCTCGAATTTAAGCATCTTAAATCAGGGAGAAAGTGTGAATTACATGTTAGTACGTTATTGGGTTGC-AT---AATCAATGAAAAAGTGAATAACTATTGGTCGGTTCGCCATGAGCGAAATTACATTATTTGGCTACA-TTTGGGAAATCGTGCCATGTGCACTTGCAAGAAAAATTATAATCAACAGTGTGGAATACTATTATTTACT----ATCAATTACAACCATTTCATTGATATATTTGACGGTGTAGCAAGAATCCTGTATTTAACA
gi|10 : CATTTATTCTCTCATTA---CAT--GTACATGTAA-AAAT--AAGG-A-AAAC-G--T-ACAAA-TATTA-TAACAGTAAGTGTTAATTTTGCTGGCTAATCCTCTCCTAATACATCCAGTTCATA--CCCAGTCCGGTTTGCGCCCGGCTATCAATAACTATCGTCATTAGACTCT--CTT---G-TGTAGCC--------------CTGTTGTCTCCGGCTTAAACCATGCACACATCGATTTGGACATA--------CAGAAGACACAGT--GAGG---TAGCCGCAAATTTTATCATTA-TAATTTTGAATTGAAGCGTTTTAAATCgag
gi|11 : tatcaacagccacaattgCATTTATTCTTTCATTA---CAT--TTACATGTAA-AAAT--AAGG-A-AAAA-G--T-ACAAA-CATTA-TATCAGGTAGTGTTAATTGTGTTGGCTAGTCCTCTCCTATCACA-CCAGTGTGTA--CCCAGTCTGGTCTGCACATGGCAGTCAATGACCATTGTCTTTAAACTCT--GGC---T-TGTAGTCAGGTACTAATACCGCTGT-GTCCCTGGCTTAAACCATGCACACACCAATCTGGACACACAC--TGGCAGAAGACACAGT--GAGG---TAACCTTGGATTTTATCATTATTGAGTTTGA
gi|12 : aacaacaaaaacaattaTG-TAATAGGTAGTGTAAGTTGTGTTGGCTGGTCCTCTCCTATCAGATCCAGTGTAGA--CCCAGTCCGGTCAGCGCATGGCAGTCAAGGACCATCA----------CG--GG-------ATAGCCAAGTACCAATACAGCTGT-GCCCGCGGCATGAAACATGTACACACTGATCTGGACAAACAC--TGACAGAAATCGCGAT--GAGG---TAAGCTTGAATTTTATCATTA-TAATTGTGAATTAAATCGTCTTATATATGGGGGGAAGTGTGAAGTACATGTTAGAAGGTTATAGTGTTAC-
gi|13 : aattgCATTTAATCTCAAATCA---TAT--TTACAT-CAATAAAT--GAGT-A-GAA--G----ACAAA-T-TTAGTGTCTGATAATGCCTGGTACGTTGGCTGGTCGCCCTCTATCAGATCCATTAAAGA--TCCAGCCCGGCCAGCGAATGGCAATTAGGGATCACCGTCATTAGACTCT--GGCGGAG-TTCAGCCAGCTACGAATACCGCTGTtatttaaaaccataaaa
gi|14 : acagcaacgatcacaacactaaCATTTATTCTCGCATTA---CAT--TTACATGTAA-AAAT--GAGA-A-AAAAAG--T-ACAAA-TATTA-TAACAGGTAGTGTTAAT-GTGTTGGCTGGTCCTCTCCCTTCACATCCAGTGTATA--CCCAGTCTGGTCTGC-CACGGCTGTCAGTGACCATTGTCATAAGACTCTGCGAC---GATGTGGCCAGGTACTAATatcactg
gi|15 : aaacaacaacaaaaattaTTATTCTCTCATTA---CAT--TTACATGTAA-AAAT--GAGG-A-AAA--G--T-ACAAA-TATTA-TAACAGGTAGTGTTAATTGTGTTGGCTAGTCCTCTCCTATCACATCCAGTGTATA--CCCAGTCCGATCTGTACACGGCTGCCAATGACCATCGTCATTAGACTCT--GGC---G-TGTAG
gi|16 : caacagcaacaacaacaacaacaCATTTATTTTCTCATTA---CAT--TTACATGCAA-AAAT--GAGG-A-AAAA-G--T-ACAAA-TATTA-TAACAGGTAGTGTTAATTATGTTGGCTAGTCCTCTCTTATCACATCCAGTGTATA--CCCAGTCCGGTTTGCGCACGGCTGTCAATGACCATCGT-ATTAGACTCT--GGC---G-TGTAG
gi|17 : caacaatacaacaacaactaTTATTCTTTCATTA---CAT--TACCATGTGA-AAAT--GAGG-A-AAAA-G--T-GCAAA-TATTA-TAACAGGTAGCGTTAATTGT--TGACTAGTACTCTCCTGTCACATCCAGTGTATA--CCCAGTCTGGTCAGAGCACGGCTGCCAATGATCATCGTCATAAGA--CT--GAC---G-TGTAGTCAGGTACTAATACCGCTGT
gi|18 : TTTATTCTCTCATTA---CAT--TTACATGTAA-AAAT--GAGG-A-AAA--A--TTACAAA-TTTTA-TAACTGATAGTGTTAATTGTGTTGGCTAGTTCTCTACTGCCACA----GTGTATA--CCCAGTCCGGTCTGCGCACGGCTGTCAGTGACCATCGTCATTAGGCTCT--GGC---G-TGTAGCCAGGTACatccg
gi|19 : CATGTAA-AAAT--GAGGGA-AAA--G--C-ACAAA-TATTA-TAACAGGTAGTGTTAATTGTGTTGACTAGTCCTCTCCTATCACATCCAGTGTATA--TCCAGTCCAGTCTGCGCACGGCTGTCAATGACCGTCGTCATTAGTCTCT--GGC---G-TGCAGCCAGGTACTTATACTGTT
gi|2 : CATTTATTCTCTCATTA---CAT--TTACATGTTA-AAAT--GAGG-A-AAAA-G--T-TTAAA-TATTA-TAACAGGTAGTGTTAATTGTGTTGGTCAGTCCTCTCCTATCACATCGAGTGTATA--CTCAGTCCGGTCTGAGCATGGCTGTCAATGACCATCGTCATTAGAATCT--CGC---A-TGTAGCCAGGTACTAATACCGCCGTTGTCTCCTGCTTAAACCATGCACACGACGATCTGGACACACAC--TGTCAGAAGACACAGT--GAGG---TAGCCTTGGATTTTATCATTA-TAACCTTGAATTTAAGTGTCTAAAATCAGGGATGAAGTTTGAAGTACAT--------GTTATCGGGTTGC-AT---AATCAATGAAATAGCGAATAACTATTGGTCAGTTTGTTGTGAGTGAAATTACATTATTTGGCTACATTTGGTAAAATTGTGCCATGTGCACTTGCAGCAAGAA-TATAATCTACAGTGGGGAATACTATTA
gi|20 : caacaacaacaattaCATTTCTTCTCTCATTAGTGTATGATTACATTTA-----------------------C-ACACA-T-TTG-GAACAGGTAGTGCCAATTGTG-------------------CAGACCCAGT---------CAAGCCAGT----GCACGGCAGTCAGGGATCACTGTCATTAGACTC
gi|22 : aacaaCATTTATTCTCTCATTA---CCT--TAACATGTAA-AA-T--GAGGGA-AAA--G--A-ACAAAATTTTA-TAACAAGTAGTGTTAATTGTGTTGGCTTGTACTCTC
gi|23 : tacaacagcaactacatttcAA-AAAT--GAAG-A-AAA--A--T-A------------GACAGGTAGTATCAATTGTGTTGGCTGGTCCTCTCCTATCACATTCAGTGTAGA--CCCAGTCCGGTCAGCG----------------CATCGTCATTAGGCTCT--G
gi|24 : CATTTATTCTCTCATTA---CAT--TTATATG-AA-AAAT--TAAG-ACAAA--A--T-TCAAC-TTTTA-TAACAGTTAGTGTTAATTGTGTTGGCTA
gi|27 : ataacaacaacaataacgaTTATTCTCTCATTA---CAT--TTACATGTAA-AAATTGGGGG-A-AAA--A--T-ACAAA-TAT
gi|29 : ataacaacaataacaTCTCATTA---CAT--TTACATGTAA-AAAT--GAGGAA-AAA--G--T-ATAAaa
gi|3 : taCATTTATTCTCTCATTT---CAT--TAACATG-GA-AAAT--GAGG-A-AAA--AAAT-ACAAA-TTTTA-TAACAGGTAGTGTTATTTGTGATGGCTAGTCCTCTCCTGTCACATCCAGTGTATATACCCAGTCAGGTCTGCGCACGGCTGTCAATGACCATCGTCATTAGACTCT--GGC---G-TGTTGCCAGGTGCT------------GTCTCCAGCTTAAACCATGCACACGCCGATCTGGACACACACACTGTCAGAAGACACTGTCAGAAGACACAGCCTCGGATTTTATCGTTA-TAATCTTGAATTTAAGCGTCTTTAATCAGGGAGGAACTGTTAAATGCATATTAGTACTTTATCGGGTTGC-AT---AATCAATAAAATAGTGAATAACTATTGGTCGGTTCGCAGTGGATGAAATTACATtt
gi|4 : acaacatcaacaacaatta--GAGG-A-AAA--AA-T-ACAAA-TATTA-TAACAGGTAGTATTAATTGTGTTGGCTAGTCCTCTCCTACCACATCCAGTGTATA--CTCAGTC-----TGTGCATGACAGTCAATGACCATTGTCATTAGACT----GAT---G-TGTAGCCAGGAACTAATACCACTGT-GTCTCCGGCTTGAACCATGCACACACTGATCTGGACATACAC--TGGCAGAAGACACAGT--GATG---TAGCCTTAGATTTTATCATTA-TAATTTTGAATTAAAGCATCTTAAATCAAGGAG-------AAAGTACATGTTAGTACGTTATCGGGTTGC-AT---AATCAATGAAATAGTGAATAATTATTGGTCCGTTCGCTGTGAGTGAAATTACATTATTTGGCT--G-TGATAGAAATTGTGCCATGTGCACTTGCAGCAATAA-TA
gi|5 : gtataaatgtctgaGTGTGCAGTACATGTTAGTACGTTATCGGG-----------A-CAATGA-----TGAATAATCATTGATCGGTTCGCCGTGAATGAAATAACATTATTTGGCTGCG-TGGGAGAAATCGTGTCATGTGCACTTGCGGCAAGAA-TAGAATCTCCAATGTGGAATACTATTATATACT----ATCAATTACAACCATGTCATTGGTATAGTTGGCGGTGTAACAAGAAGGCGGTGGTAAACA
gi|6 : CATTTATTCTCTCGTTA---TAT--TTACATGTAG-AAAT--GAGG-A-AAAA-G--T-ACAAA-TATTA-TAACAGATAGTGTTAATTGTGTTGGCTAGATCTCTCCTATCACATCCGGTGTATG--CCCAGTCCGGTAAACGCACAGCAGTCAATGACCATCGTCATTAGACTCT--GAC---T-GGTAGCCAGGTACTAATACCGCTG-TATCTCAGGCTTAAACTATGCACACACCGATCTGGACACACAC--TGTCAGAAGACACAGT--GAAG---TAGCCTCGGA-TTAATCATTA-TATTTTTGAATTTAAGCGTTTTAAATCAGGGAGGAAGTGTGAAGTACACGTTAGTACGTTATCGGGTGGC-AT---AATCAATGAAATagtttacaaggaattcgttacactctttatgcgtgcaaatttgcataagttattcagttcggtttcgttttacgaggacagcacattacccaacgcatgtatatcatgagtggtcaaatgtttatttttaattaaaagtctgcgttctcattggaaatgcgggaattta
gi|7 : acaacagcaacaattaAATGAAATAATGAATAACTATTGGTCGGCTCGCCGTGAGTGAAATTACATTATTTGGCTACG-TTGGGGAAATCGTGCCATGTGCACCTGCGGCAAGAA-TAGAATCAACAGATTGGAATACTATTATTTACT----ATCGATTATAACCATGTCATTGATATATTTGACGGTGTAGAAAGAAGGCGGTGTTAAGCA
gi|8 : CATTTATTATCTCATTA---CAT--TTACATGTCA-AAAA--CAGG-A-ACA--A--T-ACGAA-TTGTG-TAATAGGTAGTGTAAGTTGTGTTGGCTGGTCCTCTCCTATCAGATCCAGTGTAGA--CCCAGTCCGGTCAGCGCATGGCAGTCAAGGACCATCA----------CG--GG-------ATAGCCAAGTACCAATACAGCTGT-GCCCGCGGCATGAAACATGTACACACTGATCTGGACAAACAC--TGACAGAAATCGCGAT--AAGG---TAAGCTTGAATTTTATCATTA-TAATTGTGAATTAAATCGTCTTATATATGGGGGGAAGTGTGAAGTACATGTTAGAAGGTTATAGTGTTACTATTTAAAACCATAAAATtgtttgtaaagaatgaattacactcttttataagtatgcgtgcatatttgcataagttgattagttcggtttcgtttttggaggacaaaacattatgcatcgcatgtataacatgtatggtaaaatgtttttttttatttaaaagtctgggctctcgttgaaagtgtgagcatctaa
gi|9 : caaaaacaacaacaatagTGTGTCCGGCTTAAACCATGCACACACCGATCTGGACACACAC--TGGCACAAGGCACAAT--GAGG---TAGCCTCGGATTTTATCATCA-TAATTTTGAATTTAAGCTTCTTAAATCAGGGAGGAAGTGAGAAGTACATGTCAGTACGTTATTGGGTTGC-AT---AATCAATGAAATAGTGAATAACTATTGGTCGTTTCGCCGTG--------TAT-TTATTTGGCTACA-TGGGGGAAATCGTGC---------------CAAGAA-TAGAATCGACAGTGGGGGATACTATTATCTACTATCAATCAATTACAACCATGTCATTGATATATTT
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): CAACATCAACAACAACACTAGCATCTATTCTCATTAATCATGAGGACAAAATGCACATTTTAGTATATAAAAGTGTCAATTGTGTTAGCCATTCAAATTTCATATCAACATTGGCATATGC
Unaligned ( gi|25 ): AATGCATAACTACATGTATAAGTATACGTGCACATTTACATTGTTAAATCAGTTCAGTTTCGTTTTGCGAGGAC
Unaligned ( gi|26 ): CATAAGGTTAATCAATTCAGGTTTGTTTTGCACATTATCTAGCGCATATATATCATGTGTGGTCAAATGTTA
Unaligned ( gi|28 ): GAACTAATATACTCGTATTATGCTATTTTAATAACGACGACTAAATAAACGT