lowQualScore : 111111111111111111111111111111111111111111111111111111111
lowQualScore : 5555555555 1 11111 1 1 000000000000000000000000000000000000000000000000000000000 1 11 22 5555555555555555555555555555555555555555555555555555555555555 11 111 1111111111111 11 1111 2222 1 11 1 99999999999999999999999 1 444444 1 11 1 4
lowQualScore : 6 6 0000000000 5 6 6 4 4 44444 0 5 9 66 5 0 1 5 111111111111111111111111111111111111111111111111111111111 2 4 6 6 0 00 6 77 6 1 6666666666666666666666666666666666666666666666666666666666666 7 3 33 333 3 77777777 0 3 2 1 2222222222222 666 22 666 7777 2 5 555 5 2 4 3 4444 4 5 4 7 777 4 1111 5 0 0 5 6 88 1 5 00000000000000000000000 0 4 3 2 222222 5 8 00 6 6 5 0 6
lowQualScore : . . .......... . . . . . ..... . . . .. . . . . ......................................................... . . . . . .. . .. . . ............................................................. . . .. ... . ........ . . . . ............. ... .. ... .... . . ... . . . . .... . . . . ... . .... . . . . . .. . . ....................... . . . . ...... . . .. . . . . .
lowQualScore : 0 0 0000000000 0 8 0 3 0 33333 7 0 8 11 1 1 6 3 666666666666666666666666666666666666666666666666666666666 1 5 3 7 2 00 7 11 2 2 5555555555555555555555555555555555555555555555555555555555555 2 6 11 666 6 88888888 5 1 5 0 3333333333333 444 33 444 7777 0 9 000 2 3 0 6 7777 0 3 0 0 888 4 6666 2 5 1 7 6 77 8 2 00000000000000000000000 0 8 2 5 000000 0 8 88 0 0 0 0 0
consensus : ACCAATATGATAGACACAACATTGCCGTGTGTGTTC----------CTATAAA-CTAAAATGTTTGTTCTTTTGACATTTCGATATTGAAATGTTAGAGCTCATTGTC-----CTCTTTGGTTTAGGCAGAGACATATAAACAAT--TAATTAAGTCACTGGTTTAGGCAAGTAATTATAAGTCTGGAGGACCCATCTTCCGCTTTAATAGTAGCTATTTATA-----A-CCN-----CCC-----GC---CTCCCA-AC---CC---------C-----CATCCTATAAATCACGTAATTAAATTATAGCGTCGTCGTCGGCAATCATTTTGAAACAAA-AATCTAA-----A-----C-----------ANAT----------ACT---T--A--------T-----TTAAAAA-AATAAA---TCA-TT----G---TATGCATATTTAACATATACTTTTTTA---CATAT----TTT--TTTGC---TATATTTC----TCAGTATACNAGATCGATTACGAGTATTTTTGNATACTGATTCTTAAGAATATTTATAAATGNTGAAATCAAC-C--C-TT-CCCCATT-CATTACT---C-GT--CGGTNGCAAAATGATATG-AATAAAAAAAATTCGTTTTGTAAATTTT--------C-------A------TTGGTTTT-ATATTCAATGCGCAATGCATGGATTCGTACAGTTATATTATGATCTGTGCGCTGGAACTTGGAAGTTGACTTCTGGCATTAT-TTTTTTCCCGTTATTATTATGTTATACTTGTTTTACACAGATGCAAAAACAT-ATTTTGAAAAATGCACTGGAAGTGAACC
Reference ( gi|1 ) : ACCAATATGATAGACACAACATTGCCATGTATGTTC----------CTATAAA-CTAAATTGTCTGTTCTTTTGACATTTTGATATTGAAATGTCAGAGCTCATTGTC-----CTCTTTGGTTGAGGCAAAGACATATAAACAAT--TAATTAAGTCACTGGTTTAGGCAAGCAATTATAAGTCTGGAGGACCCATCTTCCGCTTTAGTAATAGCTATTTATA-----A-CCT-----CCG-----AC---CTCCCA-AC---CC---------C-----CATCCTATAAATCACGTAATAAAATTACAGCGTCATTGTCGGCAATCGTTTTGAAACTAA-AATCTAA-----A-----C-----------ATAT----------ACT---T--A--------T-----TTAAAAA-AACAAA---TCA-TT----G---TATGCATATTTAACATATACTTTTTTA---CATAT----TTT--TTTGC---TATATTTC----TCAGTATACAAGATTGATTACAAGTATTTTTGTATACTGATTCTTAAAAATATTTATAAATGATGAAATCAAC-C--C-TT-CCCCGTT-CATTGCT---C-GT--TGGTAGCAAAATGATATG-ATTAAAACAAATTTATTTTGTAAATTTT--------C-------A------TTGGTTTT-ATATTCAATGCACAATGCATGGATTCATACAGTTATATTATGATCTGTGCGCTGGAACTTGGAAGTTGACTTCTGACATTAT-TGATTTCCAGGTATTATTATGTTATAATTGTTTTACATAGACGCAAAAAAATAATTTTGAAAAATGCGCTGGAAGTGAACC
gi|4 : ACCAATATGATAGACAAAACATTGCCGTGTGTGTTC----------CGATAAAACTAAAATGTTTGTTCTTTTGACATTTCCATATTAAAATGTTAGAGCTCATTGTC-----CTCTTTGGTTTAGGCAGAGACATAAAAAC------AATTAAGTCACTGGTTTAGGCAAGTAATTATAAGTCTGGAGGACCCATCTTCCGCTTAAATAGTAGCTATTTAT------A-CC---------------C---CTCCCC-AC---CC---------C-----CACCCTAAAAATCATGTAATTAGATTATAGCGTCATCGTCGGCAATCATTTTGAAACAAA-AATCTAA-----A-----C---------------------------------------------------AGAAA-AACAAA---TCA-TT----A---TATGTATATTTAACATATACTATTTTA---CATA------TT--GTTGT---TATATATC----TCAGTATACGAGATTGATTACGAGTATTTTTGTATACTGATTCCTAAAAATATTTATTTATGTTGAAAGCAAC-C--T-TT-CCCCATT-CATTACT---C-GT--CGGTAGCAAAATGATATG-AATAAAA-AAATTCGTTTT-TAAAATTTATAAATGAA-------A------TTGGTTTT-ATATTCAATGCGCAATGCATGGATTCGTACAGATATATTATGATCTGTGCGCTGGAACTTTGAAGTTGACTACTGGCATTAT-TT-TTTCCCGTTATTATTTTGTTATACTTGTTTTACACAGATGCAAAAACAT-ATTTTGAAAAATGCACTGGAAGTGAACC
gi|2 : tgACCAATATGATAGACACAACATTGTCGTTTGTGTTCTCGTGTTATCCTATAAA-CTAAAATGTTTGTTCTTTTGACATTTCGATATTGAAATGTTAGAGCTCATTTTC-----CTATTTGGTTTAGGCAGAGACATATAAACAAT--TAATTAAGTCACTGGTTTAGGCAAGAAATTATAAGTCTGGAGGACCCATCTTCCGATTAAATAGTAACTATTTATA-----A-CC------CCA-----AC---CCC----AC---TC---------C-----CATCCTATAAATTACGTAATTGAATTATAGTGTCGTCGTCGGCAATCATTTTGAAACAAA-AATCTAG-----A-----C-----------AGAA----------ACT---T-----------T-----TTAAAAA-AA-ATA---TCA-TT----G---TATGCATATTTCACATAAACTTTTTTA---CATAT----TTT--TTTATATATATATTTC----TCAGTATACAAGAATGATTACGAGTA-TTTTGTATACTGATTCTTAA----------AAATGATGAAATCAAC-C--CTTT-CCCCATT-CATTACT---T-GT--------CAAAATGATATGCATCAAAA-AAA-TCNNNNNNNNNNNNNN--------N-------N------NNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT-ACTTCTGGCATT------TTTCCCGTTATTATGATATCATATTTGTTTTACACAGATGCAAAAACAT-ATTTAGAAAAATGCACTAGAAGTGAAtga
gi|6 : tgACCAATATGATAGACACAACATTGCCGTGTGTGTTC----------CTATAAA-CTAAAGTGTTTGTTCTTTTGGTATTTCGATATTGAAATGTTAGAGCTCATTGTC-----CTCTTTGGTTTAGGCAGAGACATATCAACAAT--TAATTAAGTCACTGGTTTAGGCAAGTAATTATAAGTTTGGATGACCCATCTTCCGCTTTAATAGTAGCTATTTATA-----A-CCTCTACCCCC-----AC---C-CCCA-CCCCACC---------C-----CATCCTATAAATCACGTAATTAAATTATAGCGTCAACGTCGGCAATCATTTCGTAACAAA-AACCTAA-----A-----C-----------AGAT----------ACT---T--A--------T-----TT-AAAA-AACAAA---TCA-CT----G---TATGCATATTTAACATATACTTTTTTA---CGTA-----TGT--TTTGC---TGCATTTC----TCAGTATGCAAGATTGATTACGAGTATTTTTGTAAACTGATTCTTAAAAATATTTATAAATGATGAAATCAAC-C--C-tgta
gi|5 : ACTAAAATGATAGGTACAACATTGCCGTGTGTGTTCTCGTGTGTTCCTATAAA-CTAAAATGTTTGTTCTTTTGACATTTCGATATTGAAATGTTAAAGCCCATTGTC-----CTATTTGGTTTAGGCA--GACATACAAACAAT--TAATTAAGTCACTGGTTTAGGCAAGTAATTATAAGTCTGGAGGAC-----------TTTAATAGTAGCTATTTATA-----A-----------------------TCCCA--C---CC---------T-----CATCTTATAAATTACGTAATTAAATTATAGCGTTGTTCTCAGCAATCATTTTGAAACAAA-AATCTAA-----A-----C-----------AGAT----------ACT---T--A--------T-----TTAAAAA-A--AAA---TCA-TT----G---TATGCATATTTAACATATACTTTTTTA---CATA-----TTT--TTTGC---TATATTTC----TCAGTATACAAGATTGATTATGAGTACTTTTGTATACTGATTCTTAAAAATATTT-TGAATGATGAAATCAAC-C--C-TT-CCCCATT-CATTACT---C-GT--CGGTAGCAAAATTATATG-AATAAAAAAA
gi|7 : tgACCAATATGATAGACACAATATTGCTGTGTGTGTTC----------CTATAAA-CTAAAATGTTTGTTCTTTTGACATTTCGATATTG
gi|3 : CCAATATGATAGACACAACTTTGCCGTGTGTGTTC----------CTATAAA-CAAAAATGTTTAATCTTTTGACATTTCGATATTGCAATGTTATAGCCAATTGTC-----CTATTTGGTTTAGGCAGAGACATATAAACAAT--TAACTGAGTCACTGGTTTTGGCAAGTCATTATAAGTCTGTAGGACACATCTTCAGCTTTAATAGTAGCTATATAAA-----A-CCC-----CC------------------AC---TC---------C-----CATCCTATAAATTACGTAATTAAATTATAGCGTCGTCGTCGGCAATCATTTTGAAAC-AA---------------------------------AT----------ACT---T--A--------T-----TTAAAAA-A--AAA---TCA-TT----G---TATGCATATTTAACATATACTTTTTTA---CATAT----TTT--TTTAC---TATATTTC----TCAGTATACAAGATTGATTACGAGTATTTTTGAGCACTGATTCTTACAAATATTTATAAATTATGAAATCAAC-T--C-TT-TCCCATC-CATTACT---C-GT--CGGTAGCAAAATGATATC-AATAAAAAAAATTCGTTTTGTAAATTTT--------CAAATAAAA------TTGGTTTT-ATATTCAATGTGCAATGCATGGATCCCTACAGTTATGTTATGATCTGTGCGCTGGAACTTGGAAGTTGACTTCTGACATTATATTTTTTCCCGTTATTATTATGTTATACATGTTTTACACAGATGCAAAAACAT-ATTTTGAAAAAAGCACTAGAAGTGAACCgtttaggcaagtaattataagtctggaggacccatcttccgcttttatagtagctatatataccttcacccccacccatacactcccaccccatcctataaatcacgtaattaaattataacgtcatcgtcggcaatcattttgaaacaaaaatctaaacagatacttatttaaaaaataaatcattgtatgcatatttaacatatacttttttacttgtaatttgctatatttctaagtatacaagattgattacgagtatttttgtatacaaatattgataaataatgaaatcaaccctttccccattcatt
gi|8 : gACACAACATTAGCGTGTGTGTTC----------TTATAAA-CAAAAATGTTTGTTCTTTTGACATTTCGATATTGAAATGTTAGAGCTCATTGTC-----CTCT--GGTTTAGGCAGAGATATATAAACAAT--TAATTAAGTCACTGGTTTAGGCAAGTAATTATATGTCTGGAGGACTCATCTTCCACTTTAATAGTAGCTATTTATACC---C-CCT-----CCC-----ACA--CACACACAC---ACACACACATAC-----CATCCTATATATCACGTAATTAAATTATAGCGTCATCGTCGATA----TGTTGAAGCGAC-AGTGTAAGGATTG-----C-----------ATGTTGGCGCAGTAATT---TTCA--------TGATTATTAACAATAATCAACTTTCACTT----T---TATA-ATGTTTAGCATTTACTTTTTTtaa
gi|13 : ac-CTAAAATGTTTGTTCTTTTGACATTTCGATATTAAAATGTTAGAGTTCGTTGTCCTGTCCTCTTTGGTTTAGGCAGAGACATATAAACAAT--TAATTAAGTCACTGGTTTAGGCAAGCAATTATAAGGCTGGAGGACCCATCTTCCGCTTTAATAGTAGCTATTTATA-----AGCCG-----CCC-----CC---TCCCCC-AC---CC---------CACTTTCATCTTATAAATCACGTAATTAAATTATAGCGTTATCGTCGGCAATCATTTTGAAACAAA-AATCTAA-----A-----C-----------AGAT----------ACT---T--A--------T-----T
gi|13 : TCTAACATTTTAATATCGAAATGTCAAA
gi|20 : ctaaaatgtttgttctGCAGAGACGTATAAACATG--CAGTTAAGTCACTGGTgttcgttgtcctgtcctctttggtttaggcagagacatataaacaattaattaagtcactggtttaggcaagcaattataaggctggaggacccatcttccgctttaatagtagctatttataagccgccccctcccccaccccactttcatcttataaatcacgtaattaaattatagcgttatcgtcggcaatcattttgaaacaaaaatctaaacagatacttatt
gi|19 : tgtatatAGAGACATATAAACAATTGTAATTAAGTCACTGCTTCA
gi|7 : cttcgtgtagaATTGGTTTAGGCAAGTAATTATAAGTCTGGAGGACCCATCTTCCGCTTTTATAGTAGCTATATATACCTTCA-CCC-----CCACCCATACA--CTCCCA------CC---------C-----CATCCTATAAATCACGTAATTAAATTATAACGTCATCGTCGGCAATCATTTTGAAACAAA-AATCTAA-----A-----C-----------AGAT----------ACT---T--A--------T-----TT-AAAA-AATAAA---TCA-TT----G---TATGCATATTTAACATATACTTTTTTA---C---T----TGTAATTTGC---TATATTTC----TAAGTATACAAGATTGATTACGAGTATTTTTGTATAC----------AAATATTGATAAATAATGAAATCAAC-C--CTTT-CCCCATT-CATTaatg
gi|10 : accaatatgatagacacaatattgctgtgtgtgttcctataaactaaaatgtttgttcttttgacatttcgatAGACTGGAAGCTCCTTGTTTCGCTTCTGTA---GCTATTTATA-----A-ATA-----TAG-----GCGCACTATCG-AC-----------------------------AATCAAGTGATCAAATTATAGTGTTATTGTTAGC---CATTTTGAAA--AA-AATCT----------------------------------------CT---C------------------TGAA-----TAGA---TAA-TT----GCGATATG--TTTTTAAAGTATAGTTGTTGGAGGCATAT----TTC-----AC---AAT-TTTT----T--GTACACCAGATCGATTTCGACTGTTTTTAAATACTGATTCTCAAGAATATTCATAAATGTTGAAATCAAT-C--CGTT-TCCCATC-CATTTTT---T-GGCATGGTTGCAAGTTGGTGTG-AATAAA--AAATTTGTT
gi|9 : acagTCTTCCGCTATAGTA---GCTATTTACA-----A-ACA-----CAG-----GC----------AC---AC---------G-----C-TCCGA-GAATCACGTGGTCAAATTATGGCATCATTATCGG---TCATTTTGAAA--GA-CATCTGA-----A-----C-----------ATAT-----------TT---T--ACGATATGTT-----TTTAAAA-AATAAAG--TCG-TTTGGGG---T---CATATTTCATACATAATAGTTT------TAT----TCT--CT--C---TATAGT------TTAGTA-AC---CTCGATT-------TTTTTTAATGCTGATTCTTAAGAATAATCACAAATGTTGAAATGAAC-C--CTTT-CTCTGTC-CATTATTTGGC-G---TGGTTGCAAATTA--ATG-A--AAAAAAAATT
gi|11 : tgacttaataacatagataggaaagtaatTCTTCCACTATAGTA---GCTATTTATA-----A-ACA-----TAG-----GC----------AC---GC---------A-----C-TCCAA-GAATCACGTGAACAAATTATGGCAACATCATTGGC---CATTTTGAAA--AACAACCTGA-----A-----CCAGTTTTTACAATAT----------ATT---T-----------------TTGAAAA-ATAAAG---TCG-TT----G---GGGGCATATTTCACATATA------TA---TATATAAAATTT--AT--C---TATATT------TTAGTATACTAAATCAATGTCAAGTGTTTg
gi|14 : atcacacttgcattatgtaaaaacaacAATCACATGATCAAATTATGGTGTCTTTGTCAGC---CATTTTGAAAG-AC-AACCTGA-----A-----C-----------ATATTATT------ACTGTATG-A--------T-----TTTGAAA-AATAAAG--TCG-TT----G---TGGGCATATTTCACAAATGATTGTTT------TAT----TTT--TT--C---TATATTTTAGTGCCGGTATTCTAAATCAATTTGGAGTGTTTTTGAATGCTGTTTCTCAAGAATAATCACAAATGTTGAAgcaaattaatgtgaataaaaactttttttttgtttttgaatgttcaaacaacatt
gi|18 : aatgcaggcacgcactacgagAAATTAAAGCATCCTTGTTGG---TCATTTTGAAA--AATAATCTGA-----ACAGATC-----------ATAT----------ATT---------------T-----TTGAAActtatttggcatggttgcaaattaatttgaataaaaactt
gi|15 : cATATCT--CATAAAATTGCTTA----A-AT----TGT--TTT-C---TATATTTA------AGTATACCTGATCCATTTCAAGTGTTTTTGAATACTTATTATCAAGAATATTCATAAATGTTGATATCAAA-CTGT-TT-CACCATC-CATTATT---T-GGCATGGTTACAAACTG
gi|17 : aactagctatttataaaggcagacagacctccaagaatcacatgctcaaattatagctttatcgtctcatTTTTTGAGTA----TTCTCAAGAATAATTATAAACGTTACTATCAACAC--A-TT-CACCTTTCCATTATT---CGGTA-TGGTTGCAAA
gi|12 : AATATTTATAAATGATGAAATCAAC-C--C-TTTCCCCATT-CATGACT---C-GT--CGGTAGCCATATGATATA-AACTAAGCAAATTT-TTTTGTAAATTTT--------C-------AAATAAATTGTTTTTTATATTCAATGCGCAATGCATGGATTAATACAGTTACATTATGATCAGTGCGCTGGAACTTGGAAGTTGACTTCTGACATTAT-CGTTTTCCCGGTATTATTATGTTATAACTGTTTTATACAGATGCAAAAACAT-ATTTTGAAAAATGAACTGGAAGTGAACCttagtgcgacgtattgcatgaaaggattttttt
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): AATCGATTTCAAGGGTTTTTGAATGCTGATTTTCAAGAATAATCACAAATGTTGAAATAAACACTTTCCCTGTCCATTATTTGATATGGTTGCAAATTAATGTGAATAAAAAAAAATTTTTTT
Alignments
lowQualScore : 2222222222 2222222222 11111 88888888888888888888888888888888888888888888888888888888888888888 3333333333333333333333333333333333 111 11111 1 222222 66666666666666666666666 11
lowQualScore : 1111111111 1111111111 4 22222 55 11 88888888888888888888888888888888888888888888888888888888888888888 1 3 6 7 1 0 77777 3 9999999999999999999999999999999999 8 3 44 555 3 7777 555 2 1 0 6666 0 00000 555 99 555 999999 1 4 1 1 0 1 5 33 1 3 888 3 333333 2 2 5 0 4 2 88888888888888888888888 8 3 0 33 0 0 3 8
lowQualScore : .......... .......... . ..... .. .. ................................................................. . . . . . . ..... . .................................. . . .. ... . .... ... . . . .... . ..... ... .. ... ...... . . . . . . . .. . . ... . ...... . . . . . . ....................... . . . .. . . . .
lowQualScore : 9999999999 9999999999 4 55555 55 88 33333333333333333333333333333333333333333333333333333333333333333 2 9 6 9 5 5 11111 0 7777777777777777777777777777777777 9 3 00 888 3 1111 888 2 5 2 2222 3 33333 111 77 888 222222 0 8 0 2 1 0 7 99 4 1 555 3 000000 2 6 8 4 6 2 22222222222222222222222 0 6 8 66 6 6 2 0
consensus : ACCAATATGATAGACACAACATTGCCGTGTGT----------GTTC----------CTATAAA-CTAAAATGTTTGTTCTTTTGACATTTCGATATTGAAATGTTAGAGCTCATTGTC-----CTCTTTGGTTTAGGCAGAGACATATAAACAAT--TAATTAAGTCACTGGTTTAGGCAAGTAATTATAAGTCTGGAGGACCCATCTTCCGCTTTAATAGTAGCTATTTATAA-C-----C-----CC--CGC-C-------TCCCA-AC---CC-----------------C-----CATCCTATAAATCACGTAATTAAATTATAGCGTCATCGTCGGCAATCATTTTGAAACAAAAATCTAA-----ACAGAT----------ACT---T--A--------T-----TTAAAAA-AATAAA---TCA-TT----G---TATGCATATTTAACATATACTTTTTTA---CATAT----TTT--TTTGC---TATATTTC----TCAGTATACNAGATCGATTACGAGTATTTTTGNATACTGATTCTTAAGAATATTCATAAATGNTGAAATCAAC-C--C-TT-CCCCATT---CATTACTC-G-T-C--GGTNGCAAANTGATATGAATAAAAAAAATTCGTTTTGTAAATTTT--------C-------A------TTGGTTTT-ATATTCAATGCGCAATGCATGGATTCGTACAGTTATATTATGATCTGTGCGCTGGAACTTGGAAGTTGACTTCTGACATTAT-TTTTTTCCCGTTATTATTATGTTATANTTGTTTTACACAGATGCAAAAACAT-ATTTTGAAAAATGCACTGGAAGTGAACC
Reference ( family-1073 ) : ACCAATATGATAGACACAACATTGCCGTGTGT----------GTTC----------CTATAAA-CTAAAATGTTTGTTCTTTTGACATTTCGATATTGAAATGTTAGAGCTCATTGTC-----CTCTTTGGTTTAGGCAGAGACATATAAACAAT--TAATTAAGTCACTGGTTTAGGCAAGTAATTATAAGTCTGGAGGACCCATCTTCCGCTTTAATAGTAGCTATTTATAA-C-----CN----CC--CGC-C-------TCCCA-AC---CC-----------------C-----CATCCTATAAATCACGTAATTAAATTATAGCGTCGTCGTCGGCAATCATTTTGAAACAAAAATCTAA-----ACANAT----------ACT---T--A--------T-----TTAAAAA-AATAAA---TCA-TT----G---TATGCATATTTAACATATACTTTTTTA---CATAT----TTT--TTTGC---TATATTTC----TCAGTATACNAGATCGATTACGAGTATTTTTGNATACTGATTCTTAAGAATATTTATAAATGNTGAAATCAAC-C--C-TT-CCCCATT---CATTACTC-G-T-C--GGTNGCAAAATGATATGAATAAAAAAAATTCGTTTTGTAAATTTT--------C-------A------TTGGTTTT-ATATTCAATGCGCAATGCATGGATTCGTACAGTTATATTATGATCTGTGCGCTGGAACTTGGAAGTTGACTTCTGGCATTAT-TTTTTTCCCGTTATTATTATGTTATACTTGTTTTACACAGATGCAAAAACAT-ATTTTGAAAAATGCACTGGAAGTGAACC
gi|1 : ACCAATATGATAGACACAACATTGCCATGTAT----------GTTC----------CTATAAA-CTAAATTGTCTGTTCTTTTGACATTTTGATATTGAAATGTCAGAGCTCATTGTC-----CTCTTTGGTTGAGGCAAAGACATATAAACAAT--TAATTAAGTCACTGGTTTAGGCAAGCAATTATAAGTCTGGAGGACCCATCTTCCGCTTTAGTAATAGCTATTTATAA-C-----CT----CC--GAC-C-------TCCCA-AC---CC-----------------C-----CATCCTATAAATCACGTAATAAAATTACAGCGTCATTGTCGGCAATCGTTTTGAAACTAAAATCTAA-----ACATAT----------ACT---T--A--------T-----TTAAAAA-AACAAA---TCA-TT----G---TATGCATATTTAACATATACTTTTTTA---CATAT----TTT--TTTGC---TATATTTC----TCAGTATACAAGATTGATTACAAGTATTTTTGTATACTGATTCTTAAAAATATTTATAAATGATGAAATCAAC-C--C-TT-CCCCGTT---CATTGCTC-G-T-T--GGTAGCAAAATGATATGATTAAAACAAATTTATTTTGTAAATTTT--------C-------A------TTGGTTTT-ATATTCAATGCACAATGCATGGATTCATACAGTTATATTATGATCTGTGCGCTGGAACTTGGAAGTTGACTTCTGACATTAT-TGATTTCCAGGTATTATTATGTTATAATTGTTTTACATAGACGCAAAAAAATAATTTTGAAAAATGCGCTGGAAGTGAACC
gi|10 : AGACTGGAAGCTCCTTGTTTCGCTTC--T-GTAGCTATTTATAA-A-----TA----TAGGCGCAC-------TATCG-AC-------------------------------------AATCAAGTGATCAAATTATAGTGTTATTGTTAGC---CATTTTGAAA--AAAATCT------------------------CT---C------------------TGAA-----TAGA---TAA-TT----GCGATATG--TTTTTAAAGTATAGTTGTTGGAGGCATAT----TTC-----AC---AAT-TTTT----T--GTACACCAGATCGATTTCGACTGTTTTTAAATACTGATTCTCAAGAATATTCATAAATGTTGAAATCAAT-C--CGTT-TCCCATC---CATTTTTT-G-G-CATGGTTGCAAGTTGGTGTGAAT--AAAAAATTTGTT
gi|11 : acagTCTTCCACT---ATAGTAGCTATTTATAA-A-----CATAGGCA--CGC-A-------CTCCA-A-------------------------------------GAATCACGTGAACAAATTATGGCAACATCATTGGC---CATTTTGAAA-AACAACCTGA-----ACCAGT----------TTT---T--ACAATATATT-----TTTGAAA-AATAAAG--TCG-TT----G---GGGGCATATTTCACATATA------TA---TATATAAAATTT--AT--C---TATATT------TTAGTATACTAAATCAATGTCAAGTGTTT
gi|12 : atcacacttgcattatgtaaaaacaacAATATTTATAAATGATGAAATCAAC-C--C-TTTCCCCATT---CATGACTC-G-T-C--GGTAGCCATATGATATAAACTAAGCAAATTT-TTTTGTAAATTTT--------C-------AAATAAATTGTTTTTTATATTCAATGCGCAATGCATGGATTAATACAGTTACATTATGATCAGTGCGCTGGAACTTGGAAGTTGACTTCTGACATTAT-CGTTTTCCCGGTATTATTATGTTATAACTGTTTTATACAGATGCAAAAACAT-ATTTTGAAAAATGAACTGGAAGTGAACCgcaaattaatgtgaataaaaactttttttttgtttttgaatgttcaaacaacatt
gi|13 : -CTAAAATGTTTGTTCTTTTGACATTTCGATATTAAAATGTTAGAGTTCGTTGTCCTGTCCTCTTTGGTTTAGGCAGAGACATATAAACAAT--TAATTAAGTCACTGGTTTAGGCAAGCAATTATAAGGCTGGAGGACCCATCTTCCGCTTTAATAGTAGCTATTTATAAGC-----CG----CC--CCC-T-------CCCCC-AC---CC-----------------CACTTTCATCTTATAAATCACGTAATTAAATTATAGCGTTATCGTCGGCAATCATTTTGAAACAAAAATCTAA-----ACAGAT----------ACT---T--A--------T-----Tta
gi|14 : AATCACATGATCAAATTATGGTGTCTTTGTCAGC---CATTTTGAAA-GACAACCTGA-----ACATATTATT------ACTGTATG-A--------T-----TTTGAAA-AATAAAG--TCG-TT----G---TGGGCATATTTCACAAATGATTGTTT------TAT----TTT--TT--C---TATATTTTAGTGCCGGTATTCTAAATCAATTTGGAGTGTTTTTGAATGCTGTTTCTCAAGAATAATCACAAATGTTGAA----------C-TT-----ATTTGGCAT-------------GGTTGCAAATTAATTTGAATAAAAA
gi|15 : aatgcaggcacgcactacgagATATCT--CATAAAATTGCTTA----A-AT----TGT--TTT-C---TATATTTA------AGTATACCTGATCCATTTCAAGTGTTTTTGAATACTTATTATCAAGAATATTCATAAATGTTGATATCAAA-CTGT-TT-CACCATC---CATTATTT-G-G-CATGGTTACAAACTGctt
gi|16 : aactagctatttataaaggcagacagacctccaagaatcacatgctcaaattatagctttatcgtctcatATCGATTTCAAGGGTTTTTGAATGCTGATTTTCAAGAATAATCACAAATGTTGAAATAAACAC--T-TT-CCCTGTC---CATTATTT-GATAT--GGTTGCAAATTAATGTGAATAAAAAAAAATTTTTTT
gi|17 : aTTTTTGAGTA----TTCTCAAGAATAATTATAAACGTTACTATCAACAC--A-TT-CACCTTTC--CATTATTCGG-TAT--GGTTGCAAA
gi|18 : AAATTAAAGCATCCTTGTTGG---TCATTTTGAAA-AATAATCTGA-----ACAGATC---------ATA---T--A--------T-----TTttagtgcgacgtattgcatgaaaggattttttt
gi|19 : cTTCGTGTAGA-AGAGACATATAAACAATTGTAATTAAGTCACTGCTTCAttgaaa
gi|2 : cACCAATATGATAGACACAACATTGTCGTTTGT----------GTTCTCGTGTTATCCTATAAA-CTAAAATGTTTGTTCTTTTGACATTTCGATATTGAAATGTTAGAGCTCATTTTC-----CTATTTGGTTTAGGCAGAGACATATAAACAAT--TAATTAAGTCACTGGTTTAGGCAAGAAATTATAAGTCTGGAGGACCCATCTTCCGATTAAATAGTAACTATTTATAA-C-----C-----CC--AAC-C-------CC----AC---TC-----------------C-----CATCCTATAAATTACGTAATTGAATTATAGTGTCGTCGTCGGCAATCATTTTGAAACAAAAATCTAG-----ACAGAA----------ACT---T-----------T-----TTAAAAA-AA-ATA---TCA-TT----G---TATGCATATTTCACATAAACTTTTTTA---CATAT----TTT--TTTATATATATATTTC----TCAGTATACAAGAATGATTACGAGTA-TTTTGTATACTGATTCTTAA----------AAATGATGAAATCAAC-C--CTTT-CCCCATT---CATTACTT-G-T---------CAAAATGATATGCATCAAAAAAA-TCNNNNNNNNNNNNNN--------N-------N------NNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT-ACTTCTGGCA------TTTTTCCCGTTATTATGATATCATATTTGTTTTACACAGATGCAAAAACAT-ATTTAGAAAAATGCACTAGAAGTGAAaatg
gi|20 : tgGTATATGCAGAGACGTATAAACATG--CAGTTAAGTCACTGGTtgta
gi|3 : tCCAATATGATAGACACAACTTTGCCGTGTGT----------GTTC----------CTATAAA-CAAAAATGTTTAATCTTTTGACATTTCGATATTGCAATGTTATAGCCAATTGTC-----CTATTTGGTTTAGGCAGAGACATATAAACAAT--TAACTGAGTCACTGGTTTTGGCAAGTCATTATAAGTCTGTAGGACACATCTTCAGCTTTAATAGTAGCTATATAAAA-C-----CC----CC--------------------AC---TC-----------------C-----CATCCTATAAATTACGTAATTAAATTATAGCGTCGTCGTCGGCAATCATTTTGAAACAA-----------------AT----------ACT---T--A--------T-----TTAAAAA-A--AAA---TCA-TT----G---TATGCATATTTAACATATACTTTTTTA---CATAT----TTT--TTTAC---TATATTTC----TCAGTATACAAGATTGATTACGAGTATTTTTGAGCACTGATTCTTACAAATATTTATAAATTATGAAATCAAC-T--C-TT-TCCCATC---CATTACTC-G-T-C--GGTAGCAAAATGATATCAATAAAAAAAATTCGTTTTGTAAATTTT--------CAAATAAAA------TTGGTTTT-ATATTCAATGTGCAATGCATGGATCCCTACAGTTATGTTATGATCTGTGCGCTGGAACTTGGAAGTTGACTTCTGACATTATATTTTTTCCCGTTATTATTATGTTATACATGTTTTACACAGATGCAAAAACAT-ATTTTGAAAAAAGCACTAGAAGTGAACC
gi|4 : gACCAATATGATAGACAAAACATTGCCGTGTGT----------GTTC----------CGATAAAACTAAAATGTTTGTTCTTTTGACATTTCCATATTAAAATGTTAGAGCTCATTGTC-----CTCTTTGGTTTAGGCAGAGACATAAAAAC------AATTAAGTCACTGGTTTAGGCAAGTAATTATAAGTCTGGAGGACCCATCTTCCGCTTAAATAGTAGCTATTTAT-A-C-----C-----------C-C-------TCCCC-AC---CC-----------------C-----CACCCTAAAAATCATGTAATTAGATTATAGCGTCATCGTCGGCAATCATTTTGAAACAAAAATCTAA-----ACAG----------------------------------------AAA-AACAAA---TCA-TT----A---TATGTATATTTAACATATACTATTTTA---CATA------TT--GTTGT---TATATATC----TCAGTATACGAGATTGATTACGAGTATTTTTGTATACTGATTCCTAAAAATATTTATTTATGTTGAAAGCAAC-C--T-TT-CCCCATT---CATTACTC-G-T-C--GGTAGCAAAATGATATGAAT-AAAAAAATTCGTTTT-TAAAATTTATAAATGAA-------A------TTGGTTTT-ATATTCAATGCGCAATGCATGGATTCGTACAGATATATTATGATCTGTGCGCTGGAACTTTGAAGTTGACTACTGGCATTA--TTTTTTCCCGTTATTATTTTGTTATACTTGTTTTACACAGATGCAAAAACAT-ATTTTGAAAAATGCACTGGAAGTGAACCtaa
gi|5 : tgACTAAAATGATAGGTACAACATTGCCGTGTGTGTTCTCGTGTGTTC----------CTATAAA-CTAAAATGTTTGTTCTTTTGACATTTCGATATTGAAATGTTAAAGCCCATTGTC-----CTATTTGGTTTAGGC--AGACATACAAACAAT--TAATTAAGTCACTGGTTTAGGCAAGTAATTATAAGTCTGGAGGA-----------CTTTAATAGTAGCTATTTATAA-----------------------------TCCC--AC---CC-----------------T-----CATCTTATAAATTACGTAATTAAATTATAGCGTTGTTCTCAGCAATCATTTTGAAACAAAAATCTAA-----ACAGAT----------ACT---T--A--------T-----TTAAAAA-A--AAA---TCA-TT----G---TATGCATATTTAACATATACTTTTTTA---CATA-----TTT--TTTGC---TATATTTC----TCAGTATACAAGATTGATTATGAGTACTTTTGTATACTGATTCTTAAAAATATTT-TGAATGATGAAATCAAC-C--C-TT-CCCCATT---CATTACTC-G-T-C--GGTAGCAAAATTATATGAATAAAAAAAtga
gi|6 : tgACCAATATGATAGACACAACATTGCCGTGTGT----------GTTC----------CTATAAA-CTAAAGTGTTTGTTCTTTTGGTATTTCGATATTGAAATGTTAGAGCTCATTGTC-----CTCTTTGGTTTAGGCAGAGACATATCAACAAT--TAATTAAGTCACTGGTTTAGGCAAGTAATTATAAGTTTGGATGACCCATCTTCCGCTTTAATAGTAGCTATTTATAA-CCTCTACC----CC--CAC-C--------CCCA-CCCCACC-----------------C-----CATCCTATAAATCACGTAATTAAATTATAGCGTCAACGTCGGCAATCATTTCGTAACAAAAACCTAA-----ACAGAT----------ACT---T--A--------T-----TT-AAAA-AACAAA---TCA-CT----G---TATGCATATTTAACATATACTTTTTTA---CGTA-----TGT--TTTGC---TGCATTTC----TCAGTATGCAAGATTGATTACGAGTATTTTTGTAAACTGATTCTTAAAAATATTTATAAATGATGAAATCAAC-C--C-
gi|7 : ACCAATATGATAGACACAATATTGCTGTGTGT----------GTTC----------CTATAAA-CTAAAATGTTTGTTCTTTTGACATTTCGATATTG
gi|7 : ATTGGTTTAGGCAAGTAATTATAAGTCTGGAGGACCCATCTTCCGCTTTTATAGTAGCTATATATAC-CTTCA-CC----CC--CAC-CCATACACTCCCA------CC-----------------C-----CATCCTATAAATCACGTAATTAAATTATAACGTCATCGTCGGCAATCATTTTGAAACAAAAATCTAA-----ACAGAT----------ACT---T--A--------T-----TT-AAAA-AATAAA---TCA-TT----G---TATGCATATTTAACATATACTTTTTTA---C---T----TGTAATTTGC---TATATTTC----TAAGTATACAAGATTGATTACGAGTATTTTTGTATAC----------AAATATTGATAAATAATGAAATCAAC-C--CTTT-CCCCATT---CATTgtttaggcaagtaattataagtctggaggacccatcttccgcttttatagtagctatatataccttcacccccacccatacactcccaccccatcctataaatcacgtaattaaattataacgtcatcgtcggcaatcattttgaaacaaaaatctaaacagatacttatttaaaaaataaatcattgtatgcatatttaacatatacttttttacttgtaatttgctatatttctaagtatacaagattgattacgagtatttttgtatacaaatattgataaataatgaaatcaaccctttccccattcatt
gi|8 : accaatatgatagacacaatattgctgtgtgtgttcctataaactaaaatgtttgttcttttgacatttcgatACACAACATTAGCGTGTGT----------GTTC----------TTATAAA-CAAAAATGTTTGTTCTTTTGACATTTCGATATTGAAATGTTAGAGCTCATTGTC-----CTCT--GGTTTAGGCAGAGATATATAAACAAT--TAATTAAGTCACTGGTTTAGGCAAGTAATTATATGTCTGGAGGACTCATCTTCCACTTTAATAGTAGCTATTTATA--------------CC--C-C-C-------TCCCACAC---ACACACACACACACACATAC-----CATCCTATATATCACGTAATTAAATTATAGCGTCATCGTCG---AT-ATGTTGAAGCGACAGTGTAAGGATTGCATGTTGGCGCAGTAATT---TTCA--------TGATTATTAACAATAATCAACTTTCACTT----T---TATA-ATGTTTAGCATTTACTTTTTT
gi|9 : acTCTTCCGCT---ATAGTAGCTATTTACAA-A-----CA----CA--GGC---------------AC---AC-----------------G-----C-TCCGA-GAATCACGTGGTCAAATTATGGCATCATTATCGG---TCATTTTGAAA--GACATCTGA-----ACATAT-----------TT---T--ACGATATGTT-----TTTAAAA-AATAAAG--TCG-TTTGGGG---T---CATATTTCATACATAATAGTTT------TAT----TCT--CT--C---TATAGTTT------AGTA-ACC---TCGATT-------TTTTTTAATGCTGATTCTTAAGAATAATCACAAATGTTGAAATGAAC-C--CTTT-CTCTGTC---CATTATTT-G-G-CGTGGTTGCAAATTA--ATGA--AAAAAAAATT
Alignments
lowQualScore : 2222222222 2222222222 11111 7777777777777777777777777777777777777777777777777777777777777 111111111111111 2222222222222222222222222222222222222222 111 11111 111111 1 222222 66666666666666666666666 11
lowQualScore : 1111111111 1111111111 4 22222 55 11 1111111111111111111111111111111111111111111111111111111111111 1 6 6 7 1 6666 777777777777777 7777777777777777777777777777777777777777 7 66 555 3 7777 4 1 0 555 00000 44 333333 99999 1 4 1 1 0 1 1 5 33 1 3 888 3 333333 2 1 5 0 4 2 88888888888888888888888 8 3 0 33 0 0 1 8
lowQualScore : .......... .......... . ..... .. .. ............................................................. . . . . . .... ............... ........................................ . .. ... . .... . . . ... ..... .. ...... ..... . . . . . . . . .. . . ... . ...... . . . . . . ....................... . . . .. . . . .
lowQualScore : 9999999999 9999999999 4 55555 55 88 8888888888888888888888888888888888888888888888888888888888888 5 2 6 9 5 1111 999999999999999 4444444444444444444444444444444444444444 7 11 888 3 1111 0 5 2 222 33333 66 111111 55555 0 8 0 2 1 6 0 7 99 4 1 555 3 000000 2 0 8 4 6 2 22222222222222222222222 0 6 8 66 6 6 0 0
consensus : ACCAATATGATAGACACAACATTGCCGTGTGT----------GTTC----------CTATAAA-CTAAAATGTTTGTTCTTTTGACATTTCGATATTGAAATGTTAGAGCTCATTGTC-----CTCTTTGGTTTAGGCAGAGACATATAAACAAT--TAATTAAGTCACTGGTTTAGGCAAGTAATTATAAGTCTGGAGGACCCATCTTCCGCTTTAATAGTAGCTATTTATA------A-CCCC---CG-C-C-------T-CCCA-AC---CC-------------C-----CATCCTATAAATCACGTAATTAAATTATAGCGTCATCGTCGGCAATCATTTTGAAACAAAAATCT----AA---------------ACA--------G--------AT----ACT---T-A--------TTTAAAAAAATAAA---TCG-TT----GTATGCATATTTAACATATACTTTTTTACATAT----TTT--TTTGC---TATATTTC----TCAGTATACNAGATCGATTACGAGTATTTTTGNATACTGATTCTTAAGAATATTCATAAATGNTGAAATCAAC-C--C-TT-CCCCATT---CATTACTC-G-T-C--GGTNGCAAANTGATATGAATAAAAAAAATTCGTTTTGTAAATTTT--------C-------A------TTGGTTTT-ATATTCAATGCGCAATGCATGGATTCGTACAGTTATATTATGATCTGTGCGCTGGAACTTGGAAGTTGACTTCTGACATTAT-TTTTTTCCCGTTATTATTATGTTATANTTGTTTTACACAGATGCAAAAACAT-ATTTTGAAAAATGCACTGGAAGTGAACC
Reference ( family-1073 ) : ACCAATATGATAGACACAACATTGCCGTGTGT----------GTTC----------CTATAAA-CTAAAATGTTTGTTCTTTTGACATTTCGATATTGAAATGTTAGAGCTCATTGTC-----CTCTTTGGTTTAGGCAGAGACATATAAACAAT--TAATTAAGTCACTGGTTTAGGCAAGTAATTATAAGTCTGGAGGACCCATCTTCCGCTTTAATAGTAGCTATTTATA------A-CCCC---CG-C-C-------T-CCCA-AC---CC-------------C-----CATCCTATAAATCACGTAATTAAATTATAGCGTCATCGTCGGCAATCATTTTGAAACAAAAATCT----AA---------------ACA--------G--------AT----ACT---T-A--------TTTAAAAAAATAAA---TCA-TT----GTATGCATATTTAACATATACTTTTTTACATAT----TTT--TTTGC---TATATTTC----TCAGTATACNAGATCGATTACGAGTATTTTTGNATACTGATTCTTAAGAATATTCATAAATGNTGAAATCAAC-C--C-TT-CCCCATT---CATTACTC-G-T-C--GGTNGCAAANTGATATGAATAAAAAAAATTCGTTTTGTAAATTTT--------C-------A------TTGGTTTT-ATATTCAATGCGCAATGCATGGATTCGTACAGTTATATTATGATCTGTGCGCTGGAACTTGGAAGTTGACTTCTGACATTAT-TTTTTTCCCGTTATTATTATGTTATANTTGTTTTACACAGATGCAAAAACAT-ATTTTGAAAAATGCACTGGAAGTGAACC
gi|1 : ACCAATATGATAGACACAACATTGCCATGTAT----------GTTC----------CTATAAA-CTAAATTGTCTGTTCTTTTGACATTTTGATATTGAAATGTCAGAGCTCATTGTC-----CTCTTTGGTTGAGGCAAAGACATATAAACAAT--TAATTAAGTCACTGGTTTAGGCAAGCAATTATAAGTCTGGAGGACCCATCTTCCGCTTTAGTAATAGCTATTTATA------A-CCTC---CGAC-C-------T-CCCA-AC---CC-------------C-----CATCCTATAAATCACGTAATAAAATTACAGCGTCATTGTCGGCAATCGTTTTGAAACTAAAATCT----AA---------------ACA--------T--------AT----ACT---T-A--------TTTAAAAAAACAAA---TCA-TT----GTATGCATATTTAACATATACTTTTTTACATAT----TTT--TTTGC---TATATTTC----TCAGTATACAAGATTGATTACAAGTATTTTTGTATACTGATTCTTAAAAATATTTATAAATGATGAAATCAAC-C--C-TT-CCCCGTT---CATTGCTC-G-T-T--GGTAGCAAAATGATATGATTAAAACAAATTTATTTTGTAAATTTT--------C-------A------TTGGTTTT-ATATTCAATGCACAATGCATGGATTCATACAGTTATATTATGATCTGTGCGCTGGAACTTGGAAGTTGACTTCTGACATTAT-TGATTTCCAGGTATTATTATGTTATAATTGTTTTACATAGACGCAAAAAAATAATTTTGAAAAATGCGCTGGAAGTGAACC
gi|10 : AGACTGGAAGCTCCTTGTTTCGCTTC--T-GTAGCTATTTATA------A-ATATAGGCG-CAC-------T-ATCG-AC---------------------------------AATCAAGTGATCAAATTATAGTGTTATTGTTAGC---CATTTTGAAA--AAAATCTCTCTGA---------------ATA--------G--------AT----AAT---T-GCGATATGTTTTTAAAGTATAG----TTG-TT----GGAGGCATATTTCACA---------------AT----TTT--TT---------------------GTACACCAGATCGATTTCGACTGTTTTTAAATACTGATTCTCAAGAATATTCATAAATGTTGAAATCAAT-C--CGTT-TCCCATC---CATTTTTT-G-G-CATGGTTGCAAGTTGGTGTGAAT--AAAAAATTTGTT
gi|11 : acagTCTTCCACT---ATAGTAGCTATTTATA------A-ACAT---AG-G-C-------A-CGCA------CT-------------C-----CA----A-GAATCACGTGAACAAATTATGGCAACATCATTGGC---CATTTTGAAA-AACAACCT----GA---------------ACC--------A--------GT----TTT---T-ACAATATATTTTTGAAAAATAAAG--TCG-TT----GGGGGCATATTTCACATATA------TATATATAAAATTT--AT--C---TATATT------TTAGTATACTAAATCAATGTCAAGTGTTT
gi|12 : atcacacttgcattatgtaaaaacaacAATATTTATAAATGATGAAATCAAC-C--C-TTTCCCCATT---CATGACTC-G-T-C--GGTAGCCATATGATATAAACTAAGCAAATTT-TTTTGTAAATTTT--------C-------AAATAAATTGTTTTTTATATTCAATGCGCAATGCATGGATTAATACAGTTACATTATGATCAGTGCGCTGGAACTTGGAAGTTGACTTCTGACATTAT-CGTTTTCCCGGTATTATTATGTTATAACTGTTTTATACAGATGCAAAAACAT-ATTTTGAAAAATGAACTGGAAGTGAACCgcaaattaatgtgaataaaaactttttttttgtttttgaatgttcaaacaacatt
gi|13 : -CTAAAATGTTTGTTCTTTTGACATTTCGATATTAAAATGTTAGAGTTCGTTGTCCTGTCCTCTTTGGTTTAGGCAGAGACATATAAACAAT--TAATTAAGTCACTGGTTTAGGCAAGCAATTATAAGGCTGGAGGACCCATCTTCCGCTTTAATAGTAGCTATTTATA------AGCCGC---CC-C-C-------TCCCCC-AC---CC-------------CACTTTCATCTTATAAATCACGTAATTAAATTATAGCGTTATCGTCGGCAATCATTTTGAAACAAAAATCT----AA---------------ACA--------G--------AT----ACT---T-A--------TTta
gi|14 : AATCACATGATCAAATTATGGTGTCTTTGTCAGC---CATTTTGAAA-GACAACCT----GA---------------ACA--------T--------ATTATTACTGTATGA--------TTTTGAAAAATAAAG--TCG-TT----GTGGGCATATTTCACAAATGATTGTTT---TAT----TTT--TT--C---TATATTTTAGTGCCGGTATTCTAAATCAATTTGGAGTGTTTTTGAATGCTGTTTCTCAAGAATAATCACAAATGTTGAA----------C-TT-----ATTTGGCAT-------------GGTTGCAAATTAATTTGAATAAAAA
gi|15 : aatgcaggcacgcactacgagTAGCTATTTATA------A-AGGC---AG-A-C------------AGAC---CT-------------C-----CA----A-GAATCACATGCTCAAATTATAGCTTTATCGTCctt
gi|15 : aacATATCT--CATAAAATTGCTTA-A-AT----TGT--TTT-C---TATATTTA------AGTATACCTGATCCATTTCAAGTGTTTTTGAATACTTATTATCAAGAATATTCATAAATGTTGATATCAAA-CTGT-TT-CACCATC---CATTATTT-G-G-CATGGTTACAAACTGtcatatatctcataaaattgcttaaattgttttctatatttaagtatacctgatccatttcaagtgtttttgaatacttattatcaagaatattcataaatgttgatatcaaactgtttcaccatccattatttggcatggttacaaactg
gi|16 : aactagctatttataaaggcagacagacctccaagaatcacatgctcaaattatagctttatcgtctcatATCGATTTCAAGGGTTTTTGAATGCTGATTTTCAAGAATAATCACAAATGTTGAAATAAACAC--T-TT-CCCTGTC---CATTATTT-GATAT--GGTTGCAAATTAATGTGAATAAAAAAAAATTTTTTT
gi|17 : aTTTTTGAGTA----TTCTCAAGAATAATTATAAACGTTACTATCAACAC--A-TT-CACCTTTC--CATTATTCGG-TAT--GGTTGCAAATTAGTGCGA
gi|18 : AAATTAAAGCATCCTTGTTGG---TCATTTTGAAA-AATAATCT----GA---------------ACA--------G--------ATC---ATA---T-A--------TTTcgtattgcatgaaaggattttttt
gi|19 : cTTCGTGTAGA-AGAGACATATAAACAATTGTAATTAAGTCACTGCTTCAttgaaa
gi|2 : cACCAATATGATAGACACAACATTGTCGTTTGT----------GTTCTCGTGTTATCCTATAAA-CTAAAATGTTTGTTCTTTTGACATTTCGATATTGAAATGTTAGAGCTCATTTTC-----CTATTTGGTTTAGGCAGAGACATATAAACAAT--TAATTAAGTCACTGGTTTAGGCAAGAAATTATAAGTCTGGAGGACCCATCTTCCGATTAAATAGTAACTATTTATA------A-CCCC---AA-C-C-------C-C----AC---TC-------------C-----CATCCTATAAATTACGTAATTGAATTATAGTGTCGTCGTCGGCAATCATTTTGAAACAAAAATCT----AG---------------ACA--------G--------AA----ACT---T----------TTTAAAAAAA-ATA---TCA-TT----GTATGCATATTTCACATAAACTTTTTTACATAT----TTT--TTTATATATATATTTC----TCAGTATACAAGAATGATTACGAGTA-TTTTGTATACTGATTCTTAA----------AAATGATGAAATCAAC-C--CTTT-CCCCATT---CATTACTT-G-T---------CAAAATGATATGCATCAAAAAAA-TCNNNNNNNNNNNNNN--------N-------N------NNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT-ACTTCTGGCA------TTTTTCCCGTTATTATGATATCATATTTGTTTTACACAGATGCAAAAACAT-ATTTAGAAAAATGCACTAGAAGTGAAaatg
gi|20 : tgGTATATGCAGAGACGTATAAACATG--CAGTTAAGTCACTGGTtgta
gi|3 : tCCAATATGATAGACACAACTTTGCCGTGTGT----------GTTC----------CTATAAA-CAAAAATGTTTAATCTTTTGACATTTCGATATTGCAATGTTATAGCCAATTGTC-----CTATTTGGTTTAGGCAGAGACATATAAACAAT--TAACTGAGTCACTGGTTTTGGCAAGTCATTATAAGTCTGTAGGACACATCTTCAGCTTTAATAGTAGCTATATAAA------A-CCCC---C-------------------AC---TC-------------C-----CATCCTATAAATTACGTAATTAAATTATAGCGTCGTCGTCGGCAATCATTTTGAAACAA-----------------------------------------------AT----ACT---T-A--------TTTAAAAAA--AAA---TCA-TT----GTATGCATATTTAACATATACTTTTTTACATAT----TTT--TTTAC---TATATTTC----TCAGTATACAAGATTGATTACGAGTATTTTTGAGCACTGATTCTTACAAATATTTATAAATTATGAAATCAAC-T--C-TT-TCCCATC---CATTACTC-G-T-C--GGTAGCAAAATGATATCAATAAAAAAAATTCGTTTTGTAAATTTT--------CAAATAAAA------TTGGTTTT-ATATTCAATGTGCAATGCATGGATCCCTACAGTTATGTTATGATCTGTGCGCTGGAACTTGGAAGTTGACTTCTGACATTATATTTTTTCCCGTTATTATTATGTTATACATGTTTTACACAGATGCAAAAACAT-ATTTTGAAAAAAGCACTAGAAGTGAACC
gi|4 : gACCAATATGATAGACAAAACATTGCCGTGTGT----------GTTC----------CGATAAAACTAAAATGTTTGTTCTTTTGACATTTCCATATTAAAATGTTAGAGCTCATTGTC-----CTCTTTGGTTTAGGCAGAGACATAAAAAC------AATTAAGTCACTGGTTTAGGCAAGTAATTATAAGTCTGGAGGACCCATCTTCCGCTTAAATAGTAGCTATTTAT-------A-CC--------C-C-------T-CCCC-AC---CC-------------C-----CACCCTAAAAATCATGTAATTAGATTATAGCGTCATCGTCGGCAATCATTTTGAAACAAAAATCT----AA---------------ACA--------G------------------------------------AAAAACAAA---TCA-TT----ATATGTATATTTAACATATACTATTTTACATA------TT--GTTGT---TATATATC----TCAGTATACGAGATTGATTACGAGTATTTTTGTATACTGATTCCTAAAAATATTTATTTATGTTGAAAGCAAC-C--T-TT-CCCCATT---CATTACTC-G-T-C--GGTAGCAAAATGATATGAAT-AAAAAAATTCGTTTT-TAAAATTTATAAATGAA-------A------TTGGTTTT-ATATTCAATGCGCAATGCATGGATTCGTACAGATATATTATGATCTGTGCGCTGGAACTTTGAAGTTGACTACTGGCATTA--TTTTTTCCCGTTATTATTTTGTTATACTTGTTTTACACAGATGCAAAAACAT-ATTTTGAAAAATGCACTGGAAGTGAACCtaa
gi|5 : tgACTAAAATGATAGGTACAACATTGCCGTGTGTGTTCTCGTGTGTTC----------CTATAAA-CTAAAATGTTTGTTCTTTTGACATTTCGATATTGAAATGTTAAAGCCCATTGTC-----CTATTTGGTTTAGGC--AGACATACAAACAAT--TAATTAAGTCACTGGTTTAGGCAAGTAATTATAAGTCTGGAGGA-----------CTTTAATAGTAGCTATTTATA------A-TCCC-----------------------AC---CC-------------T-----CATCTTATAAATTACGTAATTAAATTATAGCGTTGTTCTCAGCAATCATTTTGAAACAAAAATCT----AA---------------ACA--------G--------AT----ACT---T-A--------TTTAAAAAA--AAA---TCA-TT----GTATGCATATTTAACATATACTTTTTTACATA-----TTT--TTTGC---TATATTTC----TCAGTATACAAGATTGATTATGAGTACTTTTGTATACTGATTCTTAAAAATATTT-TGAATGATGAAATCAAC-C--C-TT-CCCCATT---CATTACTC-G-T-C--GGTAGCAAAATTATATGAATAAAAAAAtga
gi|6 : tgACCAATATGATAGACACAACATTGCCGTGTGT----------GTTC----------CTATAAA-CTAAAGTGTTTGTTCTTTTGGTATTTCGATATTGAAATGTTAGAGCTCATTGTC-----CTCTTTGGTTTAGGCAGAGACATATCAACAAT--TAATTAAGTCACTGGTTTAGGCAAGTAATTATAAGTTTGGATGACCCATCTTCCGCTTTAATAGTAGCTATTTATAACCTCTA-CCCC---CA-C-C---------CCCA-CCCCACC-------------C-----CATCCTATAAATCACGTAATTAAATTATAGCGTCAACGTCGGCAATCATTTCGTAACAAAAACCT----AA---------------ACA--------G--------AT----ACT---T-A--------TTT-AAAAAACAAA---TCA-CT----GTATGCATATTTAACATATACTTTTTTACGTA-----TGT--TTTGC---TGCATTTC----TCAGTATGCAAGATTGATTACGAGTATTTTTGTAAACTGATTCTTAAAAATATTTATAAATGATGAAATCAAC-C--C-
gi|7 : ACCAATATGATAGACACAATATTGCTGTGTGT----------GTTC----------CTATAAA-CTAAAATGTTTGTTCTTTTGACATTTCGATATTG
gi|7 : ATTGGTTTAGGCAAGTAATTATAAGTCTGGAGGACCCATCTTCCGCTTTTATAGTAGCTATATATACCTTC-A-CCCC---CA-C-CCATACACT-CCCA------CC-------------C-----CATCCTATAAATCACGTAATTAAATTATAACGTCATCGTCGGCAATCATTTTGAAACAAAAATCT----AA---------------ACA--------G--------AT----ACT---T-A--------TTT-AAAAAATAAA---TCA-TT----GTATGCATATTTAACATATACTTTTTTAC---T----TGTAATTTGC---TATATTTC----TAAGTATACAAGATTGATTACGAGTATTTTTGTATAC----------AAATATTGATAAATAATGAAATCAAC-C--CTTT-CCCCATT---CATTgtttaggcaagtaattataagtctggaggacccatcttccgcttttatagtagctatatataccttcacccccacccatacactcccaccccatcctataaatcacgtaattaaattataacgtcatcgtcggcaatcattttgaaacaaaaatctaaacagatacttatttaaaaaataaatcattgtatgcatatttaacatatacttttttacttgtaatttgctatatttctaagtatacaagattgattacgagtatttttgtatacaaatattgataaataatgaaatcaaccctttccccattcatt
gi|8 : accaatatgatagacacaatattgctgtgtgtgttcctataaactaaaatgtttgttcttttgacatttcgatACACAACATTAGCGTGTGT----------GTTC----------TTATAAA-CAAAAATGTTTGTTCTTTTGACATTTCGATATTGAAATGTTAGAGCTCATTGTC-----CTCT--GGTTTAGGCAGAGATATATAAACAAT--TAATTAAGTCACTGGTTTAGGCAAGTAATTATATGTCTGGAGGACTCATCTTCCACTTTAATAGTAGCTATTTATA------C-CCCC---TC-C-C-------A-CACACAC---ACACACACACACATAC-----CATCCTATATATCACGTAATTAAATTATAGCGTCATCGTCG---AT-ATGTTGAAGCGACAGTGT----AAGGATTGCATGTTGGCGCA--------GTAATTTTCAT----GAT---T-A--------TTAACAATAATCAACTTTCACTT----TTATA-ATGTTTAGCATTTACTTTTTT
gi|9 : acTCTTCCGCT---ATAGTAGCTATTTACA------A-ACAC---AG-G-C--------------AC---AC-------------G-----C-TCCGA-GAATCACGTGGTCAAATTATGGCATCATTATCGG---TCATTTTGAAA--GACATCT----GA---------------ACATATTTTACG--------AT----ATG---T-T--------TTTAAAAAA-TAAAG--TCG-TTTGGGGT---CATATTTCATACATAATAGTTT---TAT----TCT--CT--C---TATAGTTT------AGTA-ACC---TCGATT-------TTTTTTAATGCTGATTCTTAAGAATAATCACAAATGTTGAAATGAAC-C--CTTT-CTCTGTC---CATTATTT-G-G-CGTGGTTGCAAATTA--ATGA--AAAAAAAATT
Alignments
lowQualScore : 2222222222 2222222222 11111 7777777777777777777777777777777777777777777777777777777777777 111111111111111 2222222222222222222222222222222222222222 111 11111 111111 1 222222 66666666666666666666666 11
lowQualScore : 1111111111 1111111111 4 22222 55 11 1111111111111111111111111111111111111111111111111111111111111 1 6 6 7 1 6666 777777777777777 7777777777777777777777777777777777777777 7 66 444 3 6666 4 1 0 555 00000 44 333333 99999 1 4 1 1 0 1 1 5 33 1 3 888 3 333333 2 1 5 0 4 2 88888888888888888888888 8 3 0 33 0 0 1 8
lowQualScore : .......... .......... . ..... .. .. ............................................................. . . . . . .... ............... ........................................ . .. ... . .... . . . ... ..... .. ...... ..... . . . . . . . . .. . . ... . ...... . . . . . . ....................... . . . .. . . . .
lowQualScore : 9999999999 9999999999 4 55555 55 88 8888888888888888888888888888888888888888888888888888888888888 5 2 6 9 5 1111 999999999999999 4444444444444444444444444444444444444444 7 11 666 1 5555 0 5 2 222 33333 66 111111 55555 0 8 0 2 1 6 0 7 99 4 1 555 3 000000 2 0 8 4 6 2 22222222222222222222222 0 6 8 66 6 6 0 0
consensus : ACCAATATGATAGACACAACATTGCCGTGTGT----------GTTC----------CTATAAA-CTAAAATGTTTGTTCTTTTGACATTTCGATATTGAAATGTTAGAGCTCATTGTC-----CTCTTTGGTTTAGGCAGAGACATATAAACAAT--TAATTAAGTCACTGGTTTAGGCAAGTAATTATAAGTCTGGAGGACCCATCTTCCGCTTTAATAGTAGCTATTTATA------A-CCCC---CG-C-C-------T-CCCA-AC---CC-------------C-----CATCCTATAAATCACGTAATTAAATTATAGCGTCATCGTCGGCAATCATTTTGAAACAAAAATCT----AA---------------ACA--------G--------AT----ACT---T-A--------TTTAAAAAAATAAA---TCG-TT----GTATGCATATTTAACATATACTTTTTTACATAT----TTT--TTTGC---TATATTTC----TCAGTATACNAGATCGATTACGAGTATTTTTGNATACTGATTCTTAAGAATATTCATAAATGNTGAAATCAAC-C--C-TT-CCCCATT---CATTACTC-G-T-C--GGTNGCAAANTGATATGAATAAAAAAAATTCGTTTTGTAAATTTT--------C-------A------TTGGTTTT-ATATTCAATGCGCAATGCATGGATTCGTACAGTTATATTATGATCTGTGCGCTGGAACTTGGAAGTTGACTTCTGACATTAT-TTTTTTCCCGTTATTATTATGTTATANTTGTTTTACACAGATGCAAAAACAT-ATTTTGAAAAATGCACTGGAAGTGAACC
Reference ( family-1073 ) : ACCAATATGATAGACACAACATTGCCGTGTGT----------GTTC----------CTATAAA-CTAAAATGTTTGTTCTTTTGACATTTCGATATTGAAATGTTAGAGCTCATTGTC-----CTCTTTGGTTTAGGCAGAGACATATAAACAAT--TAATTAAGTCACTGGTTTAGGCAAGTAATTATAAGTCTGGAGGACCCATCTTCCGCTTTAATAGTAGCTATTTATA------A-CCCC---CG-C-C-------T-CCCA-AC---CC-------------C-----CATCCTATAAATCACGTAATTAAATTATAGCGTCATCGTCGGCAATCATTTTGAAACAAAAATCT----AA---------------ACA--------G--------AT----ACT---T-A--------TTTAAAAAAATAAA---TCG-TT----GTATGCATATTTAACATATACTTTTTTACATAT----TTT--TTTGC---TATATTTC----TCAGTATACNAGATCGATTACGAGTATTTTTGNATACTGATTCTTAAGAATATTCATAAATGNTGAAATCAAC-C--C-TT-CCCCATT---CATTACTC-G-T-C--GGTNGCAAANTGATATGAATAAAAAAAATTCGTTTTGTAAATTTT--------C-------A------TTGGTTTT-ATATTCAATGCGCAATGCATGGATTCGTACAGTTATATTATGATCTGTGCGCTGGAACTTGGAAGTTGACTTCTGACATTAT-TTTTTTCCCGTTATTATTATGTTATANTTGTTTTACACAGATGCAAAAACAT-ATTTTGAAAAATGCACTGGAAGTGAACC
gi|1 : ACCAATATGATAGACACAACATTGCCATGTAT----------GTTC----------CTATAAA-CTAAATTGTCTGTTCTTTTGACATTTTGATATTGAAATGTCAGAGCTCATTGTC-----CTCTTTGGTTGAGGCAAAGACATATAAACAAT--TAATTAAGTCACTGGTTTAGGCAAGCAATTATAAGTCTGGAGGACCCATCTTCCGCTTTAGTAATAGCTATTTATA------A-CCTC---CGAC-C-------T-CCCA-AC---CC-------------C-----CATCCTATAAATCACGTAATAAAATTACAGCGTCATTGTCGGCAATCGTTTTGAAACTAAAATCT----AA---------------ACA--------T--------AT----ACT---T-A--------TTTAAAAAAACAAA---TCA-TT----GTATGCATATTTAACATATACTTTTTTACATAT----TTT--TTTGC---TATATTTC----TCAGTATACAAGATTGATTACAAGTATTTTTGTATACTGATTCTTAAAAATATTTATAAATGATGAAATCAAC-C--C-TT-CCCCGTT---CATTGCTC-G-T-T--GGTAGCAAAATGATATGATTAAAACAAATTTATTTTGTAAATTTT--------C-------A------TTGGTTTT-ATATTCAATGCACAATGCATGGATTCATACAGTTATATTATGATCTGTGCGCTGGAACTTGGAAGTTGACTTCTGACATTAT-TGATTTCCAGGTATTATTATGTTATAATTGTTTTACATAGACGCAAAAAAATAATTTTGAAAAATGCGCTGGAAGTGAACC
gi|10 : AGACTGGAAGCTCCTTGTTTCGCTTC--T-GTAGCTATTTATA------A-ATATAGGCG-CAC-------T-ATCG-AC---------------------------------AATCAAGTGATCAAATTATAGTGTTATTGTTAGC---CATTTTGAAA--AAAATCTCTCTGA---------------ATA--------G--------AT----AAT---T-GCGATATGTTTTTAAAGTATAG----TTG-TT----GGAGGCATATTTCACA---------------AT----TTT--TT---------------------GTACACCAGATCGATTTCGACTGTTTTTAAATACTGATTCTCAAGAATATTCATAAATGTTGAAATCAAT-C--CGTT-TCCCATC---CATTTTTT-G-G-CATGGTTGCAAGTTGGTGTGAAT--AAAAAATTTGTT
gi|11 : acagTCTTCCACT---ATAGTAGCTATTTATA------A-ACAT---AG-G-C-------A-CGCA------CT-------------C-----CA----A-GAATCACGTGAACAAATTATGGCAACATCATTGGC---CATTTTGAAA-AACAACCT----GA---------------ACC--------A--------GT----TTT---T-ACAATATATTTTTGAAAAATAAAG--TCG-TT----GGGGGCATATTTCACATATA------TATATATAAAATTT--AT--C---TATATT------TTAGTATACTAAATCAATGTCAAGTGTTT
gi|12 : atcacacttgcattatgtaaaaacaacAATATTTATAAATGATGAAATCAAC-C--C-TTTCCCCATT---CATGACTC-G-T-C--GGTAGCCATATGATATAAACTAAGCAAATTT-TTTTGTAAATTTT--------C-------AAATAAATTGTTTTTTATATTCAATGCGCAATGCATGGATTAATACAGTTACATTATGATCAGTGCGCTGGAACTTGGAAGTTGACTTCTGACATTAT-CGTTTTCCCGGTATTATTATGTTATAACTGTTTTATACAGATGCAAAAACAT-ATTTTGAAAAATGAACTGGAAGTGAACCgcaaattaatgtgaataaaaactttttttttgtttttgaatgttcaaacaacatt
gi|13 : -CTAAAATGTTTGTTCTTTTGACATTTCGATATTAAAATGTTAGAGTTCGTTGTCCTGTCCTCTTTGGTTTAGGCAGAGACATATAAACAAT--TAATTAAGTCACTGGTTTAGGCAAGCAATTATAAGGCTGGAGGACCCATCTTCCGCTTTAATAGTAGCTATTTATA------AGCCGC---CC-C-C-------TCCCCC-AC---CC-------------CACTTTCATCTTATAAATCACGTAATTAAATTATAGCGTTATCGTCGGCAATCATTTTGAAACAAAAATCT----AA---------------ACA--------G--------AT----ACT---T-A--------TTta
gi|14 : AATCACATGATCAAATTATGGTGTCTTTGTCAGC---CATTTTGAAA-GACAACCT----GA---------------ACA--------T--------ATTATTACTGTATGA--------TTTTGAAAAATAAAG--TCG-TT----GTGGGCATATTTCACAAATGATTGTTT---TAT----TTT--TT--C---TATATTTTAGTGCCGGTATTCTAAATCAATTTGGAGTGTTTTTGAATGCTGTTTCTCAAGAATAATCACAAATGTTGAA----------C-TT-----ATTTGGCAT-------------GGTTGCAAATTAATTTGAATAAAAA
gi|15 : aatgcaggcacgcactacgagTAGCTATTTATA------A-AGGC---AG-A-C------------AGAC---CT-------------C-----CA----A-GAATCACATGCTCAAATTATAGCTTTATCGTCctt
gi|15 : aacA---TCG-TC----TCAT--ATATCT--CATAAAATTGCTTA-A-AT----TGT--TTT-C---TATATTTA------AGTATACCTGATCCATTTCAAGTGTTTTTGAATACTTATTATCAAGAATATTCATAAATGTTGATATCAAA-CTGT-TT-CACCATC---CATTATTT-G-G-CATGGTTACAAACTGtcatatatctcataaaattgcttaaattgttttctatatttaagtatacctgatccatttcaagtgtttttgaatacttattatcaagaatattcataaatgttgatatcaaactgtttcaccatccattatttggcatggttacaaactg
gi|16 : aactagctatttataaaggcagacagacctccaagaatcacatgctcaaattatagctttATCGATTTCAAGGGTTTTTGAATGCTGATTTTCAAGAATAATCACAAATGTTGAAATAAACAC--T-TT-CCCTGTC---CATTATTT-GATAT--GGTTGCAAATTAATGTGAATAAAAAAAAATTTTTTT
gi|17 : aTTTTTGAGTA----TTCTCAAGAATAATTATAAACGTTACTATCAACAC--A-TT-CACCTTTC--CATTATTCGG-TAT--GGTTGCAAATTAGTGCGA
gi|18 : AAATTAAAGCATCCTTGTTGG---TCATTTTGAAA-AATAATCT----GA---------------ACA--------G--------ATC---ATA---T-A--------TTTcgtattgcatgaaaggattttttt
gi|19 : cTTCGTGTAGA-AGAGACATATAAACAATTGTAATTAAGTCACTGCTTCAttgaaa
gi|2 : cACCAATATGATAGACACAACATTGTCGTTTGT----------GTTCTCGTGTTATCCTATAAA-CTAAAATGTTTGTTCTTTTGACATTTCGATATTGAAATGTTAGAGCTCATTTTC-----CTATTTGGTTTAGGCAGAGACATATAAACAAT--TAATTAAGTCACTGGTTTAGGCAAGAAATTATAAGTCTGGAGGACCCATCTTCCGATTAAATAGTAACTATTTATA------A-CCCC---AA-C-C-------C-C----AC---TC-------------C-----CATCCTATAAATTACGTAATTGAATTATAGTGTCGTCGTCGGCAATCATTTTGAAACAAAAATCT----AG---------------ACA--------G--------AA----ACT---T----------TTTAAAAAAA-ATA---TCA-TT----GTATGCATATTTCACATAAACTTTTTTACATAT----TTT--TTTATATATATATTTC----TCAGTATACAAGAATGATTACGAGTA-TTTTGTATACTGATTCTTAA----------AAATGATGAAATCAAC-C--CTTT-CCCCATT---CATTACTT-G-T---------CAAAATGATATGCATCAAAAAAA-TCNNNNNNNNNNNNNN--------N-------N------NNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT-ACTTCTGGCA------TTTTTCCCGTTATTATGATATCATATTTGTTTTACACAGATGCAAAAACAT-ATTTAGAAAAATGCACTAGAAGTGAAaatg
gi|20 : tgGTATATGCAGAGACGTATAAACATG--CAGTTAAGTCACTGGTtgta
gi|3 : tCCAATATGATAGACACAACTTTGCCGTGTGT----------GTTC----------CTATAAA-CAAAAATGTTTAATCTTTTGACATTTCGATATTGCAATGTTATAGCCAATTGTC-----CTATTTGGTTTAGGCAGAGACATATAAACAAT--TAACTGAGTCACTGGTTTTGGCAAGTCATTATAAGTCTGTAGGACACATCTTCAGCTTTAATAGTAGCTATATAAA------A-CCCC---C-------------------AC---TC-------------C-----CATCCTATAAATTACGTAATTAAATTATAGCGTCGTCGTCGGCAATCATTTTGAAACAA-----------------------------------------------AT----ACT---T-A--------TTTAAAAAA--AAA---TCA-TT----GTATGCATATTTAACATATACTTTTTTACATAT----TTT--TTTAC---TATATTTC----TCAGTATACAAGATTGATTACGAGTATTTTTGAGCACTGATTCTTACAAATATTTATAAATTATGAAATCAAC-T--C-TT-TCCCATC---CATTACTC-G-T-C--GGTAGCAAAATGATATCAATAAAAAAAATTCGTTTTGTAAATTTT--------CAAATAAAA------TTGGTTTT-ATATTCAATGTGCAATGCATGGATCCCTACAGTTATGTTATGATCTGTGCGCTGGAACTTGGAAGTTGACTTCTGACATTATATTTTTTCCCGTTATTATTATGTTATACATGTTTTACACAGATGCAAAAACAT-ATTTTGAAAAAAGCACTAGAAGTGAACC
gi|4 : gACCAATATGATAGACAAAACATTGCCGTGTGT----------GTTC----------CGATAAAACTAAAATGTTTGTTCTTTTGACATTTCCATATTAAAATGTTAGAGCTCATTGTC-----CTCTTTGGTTTAGGCAGAGACATAAAAAC------AATTAAGTCACTGGTTTAGGCAAGTAATTATAAGTCTGGAGGACCCATCTTCCGCTTAAATAGTAGCTATTTAT-------A-CC--------C-C-------T-CCCC-AC---CC-------------C-----CACCCTAAAAATCATGTAATTAGATTATAGCGTCATCGTCGGCAATCATTTTGAAACAAAAATCT----AA---------------ACA--------G------------------------------------AAAAACAAA---TCA-TT----ATATGTATATTTAACATATACTATTTTACATA------TT--GTTGT---TATATATC----TCAGTATACGAGATTGATTACGAGTATTTTTGTATACTGATTCCTAAAAATATTTATTTATGTTGAAAGCAAC-C--T-TT-CCCCATT---CATTACTC-G-T-C--GGTAGCAAAATGATATGAAT-AAAAAAATTCGTTTT-TAAAATTTATAAATGAA-------A------TTGGTTTT-ATATTCAATGCGCAATGCATGGATTCGTACAGATATATTATGATCTGTGCGCTGGAACTTTGAAGTTGACTACTGGCATTA--TTTTTTCCCGTTATTATTTTGTTATACTTGTTTTACACAGATGCAAAAACAT-ATTTTGAAAAATGCACTGGAAGTGAACCtaa
gi|5 : tgACTAAAATGATAGGTACAACATTGCCGTGTGTGTTCTCGTGTGTTC----------CTATAAA-CTAAAATGTTTGTTCTTTTGACATTTCGATATTGAAATGTTAAAGCCCATTGTC-----CTATTTGGTTTAGGC--AGACATACAAACAAT--TAATTAAGTCACTGGTTTAGGCAAGTAATTATAAGTCTGGAGGA-----------CTTTAATAGTAGCTATTTATA------A-TCCC-----------------------AC---CC-------------T-----CATCTTATAAATTACGTAATTAAATTATAGCGTTGTTCTCAGCAATCATTTTGAAACAAAAATCT----AA---------------ACA--------G--------AT----ACT---T-A--------TTTAAAAAA--AAA---TCA-TT----GTATGCATATTTAACATATACTTTTTTACATA-----TTT--TTTGC---TATATTTC----TCAGTATACAAGATTGATTATGAGTACTTTTGTATACTGATTCTTAAAAATATTT-TGAATGATGAAATCAAC-C--C-TT-CCCCATT---CATTACTC-G-T-C--GGTAGCAAAATTATATGAATAAAAAAAtga
gi|6 : tgACCAATATGATAGACACAACATTGCCGTGTGT----------GTTC----------CTATAAA-CTAAAGTGTTTGTTCTTTTGGTATTTCGATATTGAAATGTTAGAGCTCATTGTC-----CTCTTTGGTTTAGGCAGAGACATATCAACAAT--TAATTAAGTCACTGGTTTAGGCAAGTAATTATAAGTTTGGATGACCCATCTTCCGCTTTAATAGTAGCTATTTATAACCTCTA-CCCC---CA-C-C---------CCCA-CCCCACC-------------C-----CATCCTATAAATCACGTAATTAAATTATAGCGTCAACGTCGGCAATCATTTCGTAACAAAAACCT----AA---------------ACA--------G--------AT----ACT---T-A--------TTT-AAAAAACAAA---TCA-CT----GTATGCATATTTAACATATACTTTTTTACGTA-----TGT--TTTGC---TGCATTTC----TCAGTATGCAAGATTGATTACGAGTATTTTTGTAAACTGATTCTTAAAAATATTTATAAATGATGAAATCAAC-C--C-
gi|7 : ACCAATATGATAGACACAATATTGCTGTGTGT----------GTTC----------CTATAAA-CTAAAATGTTTGTTCTTTTGACATTTCGATATTG
gi|7 : ATTGGTTTAGGCAAGTAATTATAAGTCTGGAGGACCCATCTTCCGCTTTTATAGTAGCTATATATACCTTC-A-CCCC---CA-C-CCATACACT-CCCA------CC-------------C-----CATCCTATAAATCACGTAATTAAATTATAACGTCATCGTCGGCAATCATTTTGAAACAAAAATCT----AA---------------ACA--------G--------AT----ACT---T-A--------TTT-AAAAAATAAA---TCA-TT----GTATGCATATTTAACATATACTTTTTTAC---T----TGTAATTTGC---TATATTTC----TAAGTATACAAGATTGATTACGAGTATTTTTGTATAC----------AAATATTGATAAATAATGAAATCAAC-C--CTTT-CCCCATT---CATTgtttaggcaagtaattataagtctggaggacccatcttccgcttttatagtagctatatataccttcacccccacccatacactcccaccccatcctataaatcacgtaattaaattataacgtcatcgtcggcaatcattttgaaacaaaaatctaaacagatacttatttaaaaaataaatcattgtatgcatatttaacatatacttttttacttgtaatttgctatatttctaagtatacaagattgattacgagtatttttgtatacaaatattgataaataatgaaatcaaccctttccccattcatt
gi|8 : accaatatgatagacacaatattgctgtgtgtgttcctataaactaaaatgtttgttcttttgacatttcgatACACAACATTAGCGTGTGT----------GTTC----------TTATAAA-CAAAAATGTTTGTTCTTTTGACATTTCGATATTGAAATGTTAGAGCTCATTGTC-----CTCT--GGTTTAGGCAGAGATATATAAACAAT--TAATTAAGTCACTGGTTTAGGCAAGTAATTATATGTCTGGAGGACTCATCTTCCACTTTAATAGTAGCTATTTATA------C-CCCC---TC-C-C-------A-CACACAC---ACACACACACACATAC-----CATCCTATATATCACGTAATTAAATTATAGCGTCATCGTCG---AT-ATGTTGAAGCGACAGTGT----AAGGATTGCATGTTGGCGCA--------GTAATTTTCAT----GAT---T-A--------TTAACAATAATCAACTTTCACTT----TTATA-ATGTTTAGCATTTACTTTTTT
gi|9 : acTCTTCCGCT---ATAGTAGCTATTTACA------A-ACAC---AG-G-C--------------AC---AC-------------G-----C-TCCGA-GAATCACGTGGTCAAATTATGGCATCATTATCGG---TCATTTTGAAA--GACATCT----GA---------------ACATATTTTACG--------AT----ATG---T-T--------TTTAAAAAA-TAAAG--TCG-TTTGGGGT---CATATTTCATACATAATAGTTT---TAT----TCT--CT--C---TATAGTTT------AGTA-ACC---TCGATT-------TTTTTTAATGCTGATTCTTAAGAATAATCACAAATGTTGAAATGAAC-C--CTTT-CTCTGTC---CATTATTT-G-G-CGTGGTTGCAAATTA--ATGA--AAAAAAAATT
blockSeqs : GTTCTCGTGT TCGTGTTATC A CTGTC TG TA CCCCCTCCCACACACACACACACACACACATAC T T A C A CTCT GGATTGCATGTTGGC GATAATTGCGATATGT T AT CTT C TGGG C A ATA TAAAA AA TATATA AGTGC C T A G C T A TG G T TGG G GCAT T T T G G ATAAATGAAA T A TA A .
blockSeqs : . . . . . AA CCTTCACCCCCACCCATACACTCCCACCC T T A C C . . AGTTTTTACAATATAT T AT G . . C A ACA T . TAC T T T A G T A A . T . C . GCAT A A A T N CAAATAAAA . N T T .
blockSeqs : . . . . . TA ACCTCTACCCCCACCCCCACCCCACCC T T A C A . . TATTATTACTGTATGA T AT G . . C C ACA T . TGT T T T A G C T . . T . . . ATAT T T A N G CAAATAAA . C . C .
blockSeqs : . . . . . AA AGCCGCCCCCTCCCCCACCCCACTTT C A A C C . . GTAATTTTCATGATTA A AC G . . C C ACA T . TGC T C T A G C T . . T . . . GCGT T C C G . NN . G . C .
blockSeqs : . . . . . TA AATATAGGCGCACTATCGAC T T A C T . . TATTTTACGATATGTT A AC . . . A C ACA T . TGC T A T A G C T . . . . . . TAT T T A G
blockSeqs : . . . . . TA AACATAGGCACGCACTC T T A C A . . GATCATATA A AT . . . A C ACG T . TGC T A A T A T T . . . . . . TC T T A .
blockSeqs : . . . . . TT AAGGCAGACAGACCTC T T A C A . . GATACTTA A AT . . . A C AA T . TC T G A A A T A . . . . . . TC A A A
blockSeqs : . . TA ACCCCAACCCCACTCC T T . C A . . GATACTTA A A . . . A C AC T . C T A A T A T A . . . . . . TC A A .
blockSeqs : . C ACCCCTCCCCACCCC T . . . A . . GATACTTA . T . . . A C . . . C . A A T A T T . . . . . . TC A A .
blockSeqs : . AACACAGGCACACG . . . . A . . GATACTTA . . . . . A A . . . C . A A T A T A . . . . . . T T A
blockSeqs : . ACCCCCACTCC . . . . C . . GAAACTT . . . . . C . . . . . . C A T G G A . . . . . . . . T
blockSeqs : ATCCCACCCT . . . . A . . ATACTTA . . . . . . A . C A . . . . .
blockSeqs : . . . . . G . T . . .
blockSeqCons : GATACTTA******************************** TCT*** CAAATGAA*************** T*
originalCons : ACCAATATGATAGACACAACATTGCCGTGTGT----------GTTC----------CTATAAA-CTAAAATGTTTGTTCTTTTGACATTTCGATATTGAAATGTTAGAGCTCATTGTC-----CTCTTTGGTTTAGGCAGAGACATATAAACAAT--TAATTAAGTCACTGGTTTAGGCAAGTAATTATAAGTCTGGAGGACCCATCTTCCGCTTTAATAGTAGCTATTTATA------A-CCCC---CG-C-C-------T-CCCA-AC---CC-------------C-----CATCCTATAAATCACGTAATTAAATTATAGCGTCATCGTCGGCAATCATTTTGAAACAAAAATCT----AA---------------ACA--------G--------AT----ACT---T-A--------TTTAAAAAAATAAA---TCG-TT----GTATGCATATTTAACATATACTTTTTTACATAT----TTT--TTTGC---TATATTTC----TCAGTATACNAGATCGATTACGAGTATTTTTGNATACTGATTCTTAAGAATATTCATAAATGNTGAAATCAAC-C--C-TT-CCCCATT---CATTACTC-G-T-C--GGTNGCAAANTGATATGAATAAAAAAAATTCGTTTTGTAAATTTT--------C-------A------TTGGTTTT-ATATTCAATGCGCAATGCATGGATTCGTACAGTTATATTATGATCTGTGCGCTGGAACTTGGAAGTTGACTTCTGACATTAT-TTTTTTCCCGTTATTATTATGTTATANTTGTTTTACACAGATGCAAAAACAT-ATTTTGAAAAATGCACTGGAAGTGAACC
finalCons : ACCAATATGATAGACACAACATTGCCGTGTGT----------GTTC----------CTATAAA-CTAAAATGTTTGTTCTTTTGACATTTCGATATTGAAATGTTAGAGCTCATTGTC-----CTCTTTGGTTTAGGCAGAGACATATAAACAAT--TAATTAAGTCACTGGTTTAGGCAAGTAATTATAAGTCTGGAGGACCCATCTTCCGCTTTAATAGTAGCTATTTATA------A-CCCC---CG-C-C-------T-CCCA-AC---CC-------------C-----CATCCTATAAATCACGTAATTAAATTATAGCGTCATCGTCGGCAATCATTTTGAAACAAAAATCT----AA---------------ACAGATACTTA--------------------------------TTTAAAAAAATAAA---TCG-TT----GTATGCATATTTAACATATACTTTTTTACATAT----TTT--TTTGC---TATATTTC----TCAGTATACNAGATCGATTACGAGTATTTTTGNATACTGATTCTTAAGAATATTCATAAATGNTGAAATCAAC-C--C-TT-CCCCATT---CATTACTC-GTCT---GGTNGCAAANTGATATGAATAAAAAAAATTCGTTTTGTAAATTTTCAAATGAA---------------TTGGTTTT-ATATTCAATGCGCAATGCATGGATTCGTACAGTTATATTATGATCTGTGCGCTGGAACTTGGAAGTTGACTTCTGACATTAT-TTTTTTCCCGTTATTATTATGTTATANTTGTTTTACACAGATGCAAAAACAT-ATTTTGAAAAATGCACTGGAAGTGAACC
Alignments
lowQualScore : 2222222222 2222222222 11111 7777777777777777777777777777777777777777777777777777777777777 111111111111111 2222222222222222222222222222222222222222 111 11111 111111 1 22222 111 11
lowQualScore : 1111111111 1111111111 4 22222 55 11 1111111111111111111111111111111111111111111111111111111111111 1 6 6 7 1 6666 777777777777777 7777777777777777777777777777777777777777 7 66 444 3 6666 4 1 0 555 00000 44 333333 99999 1 4 1 1 0 1 1 5 33 1 3 3 3 55555 2 1 5 55 2 999 8 3 5 0 33 0 0 1 8
lowQualScore : .......... .......... . ..... .. .. ............................................................. . . . . . .... ............... ........................................ . .. ... . .... . . . ... ..... .. ...... ..... . . . . . . . . .. . . . . ..... . . . .. . ... . . . . .. . . . .
lowQualScore : 9999999999 9999999999 4 55555 55 88 8888888888888888888888888888888888888888888888888888888888888 5 2 6 9 5 1111 999999999999999 4444444444444444444444444444444444444444 7 11 666 1 5555 0 5 2 222 33333 66 111111 55555 0 8 0 2 1 6 0 7 99 4 1 1 3 55555 2 0 8 33 8 666 0 6 0 8 66 6 6 0 0
consensus : ACCAATATGATAGACACAACATTGCCGTGTGT----------GTTC----------CTATAAA-CTAAAATGTTTGTTCTTTTGACATTTCGATATTGAAATGTTAGAGCTCATTGTC-----CTCTTTGGTTTAGGCAGAGACATATAAACAAT--TAATTAAGTCACTGGTTTAGGCAAGTAATTATAAGTCTGGAGGACCCATCTTCCGCTTTAATAGTAGCTATTTATA------A-CCCC---CG-C-C-------T-CCCA-AC---CC-------------C-----CATCCTATAAATCACGTAATTAAATTATAGCGTCATCGTCGGCAATCATTTTGAAACAAAAATCT----AA---------------ACA--------G--------AT----ACT---T-A--------TTTAAAAAAATAAA---TCG-TT----GTATGCATATTTAACATATACTTTTTTACATAT----TTT--TTTGC---TATATTTC----TCAGTATACNAGATCGATTACGAGTATTTTTGNATACTGATTCTTAAGAATATTCATAAATGNTGAAATCAAC-C--C-TT-CCCCATT-CATTACTC-G-TC-TGGTNGCAAANTGATATGAATAAAAAAAATTTGTTTTGTAAATTTTCAAAT-A-AATTGGTTTT-ATATTCAATGCGCAATGCATGGATTCGTACAGTTATATTATGATCTGTGCGCTGGAACTTGGAAGTTGACTTCTGACATTAT-TTTTTTCCCGTTATTATTATGTTATANTTGTTTTACACAGATGCAAAAACAT-ATTTTGAAAAATGCACTGGAAGTGAACC
Reference ( family-1073 ) : ACCAATATGATAGACACAACATTGCCGTGTGT----------GTTC----------CTATAAA-CTAAAATGTTTGTTCTTTTGACATTTCGATATTGAAATGTTAGAGCTCATTGTC-----CTCTTTGGTTTAGGCAGAGACATATAAACAAT--TAATTAAGTCACTGGTTTAGGCAAGTAATTATAAGTCTGGAGGACCCATCTTCCGCTTTAATAGTAGCTATTTATA------A-CCCC---CG-C-C-------T-CCCA-AC---CC-------------C-----CATCCTATAAATCACGTAATTAAATTATAGCGTCATCGTCGGCAATCATTTTGAAACAAAAATCT----AA---------------ACA--------G--------AT----ACT---T-A--------TTTAAAAAAATAAA---TCG-TT----GTATGCATATTTAACATATACTTTTTTACATAT----TTT--TTTGC---TATATTTC----TCAGTATACNAGATCGATTACGAGTATTTTTGNATACTGATTCTTAAGAATATTCATAAATGNTGAAATCAAC-C--C-TT-CCCCATT-CATTACTC-G-TC-TGGTNGCAAANTGATATGAATAAAAAAAATTCGTTTTGTAAATTTTCAAAT-G-AATTGGTTTT-ATATTCAATGCGCAATGCATGGATTCGTACAGTTATATTATGATCTGTGCGCTGGAACTTGGAAGTTGACTTCTGACATTAT-TTTTTTCCCGTTATTATTATGTTATANTTGTTTTACACAGATGCAAAAACAT-ATTTTGAAAAATGCACTGGAAGTGAACC
gi|1 : ACCAATATGATAGACACAACATTGCCATGTAT----------GTTC----------CTATAAA-CTAAATTGTCTGTTCTTTTGACATTTTGATATTGAAATGTCAGAGCTCATTGTC-----CTCTTTGGTTGAGGCAAAGACATATAAACAAT--TAATTAAGTCACTGGTTTAGGCAAGCAATTATAAGTCTGGAGGACCCATCTTCCGCTTTAGTAATAGCTATTTATA------A-CCTC---CGAC-C-------T-CCCA-AC---CC-------------C-----CATCCTATAAATCACGTAATAAAATTACAGCGTCATTGTCGGCAATCGTTTTGAAACTAAAATCT----AA---------------ACA--------T--------AT----ACT---T-A--------TTTAAAAAAACAAA---TCA-TT----GTATGCATATTTAACATATACTTTTTTACATAT----TTT--TTTGC---TATATTTC----TCAGTATACAAGATTGATTACAAGTATTTTTGTATACTGATTCTTAAAAATATTTATAAATGATGAAATCAAC-C--C-TT-CCCCGTT-CATTGCTC-G-T--TGGTAGCAAAATGATATGATTAAAACAAATTTATTTTGTAAATTTTC--------ATTGGTTTT-ATATTCAATGCACAATGCATGGATTCATACAGTTATATTATGATCTGTGCGCTGGAACTTGGAAGTTGACTTCTGACATTAT-TGATTTCCAGGTATTATTATGTTATAATTGTTTTACATAGACGCAAAAAAATAATTTTGAAAAATGCGCTGGAAGTGAACC
gi|10 : AGACTGGAAGCTCCTTGTTTCGCTTC--T-GTAGCTATTTATA------A-ATATAGGCG-CAC-------T-ATCG-AC---------------------------------AATCAAGTGATCAAATTATAGTGTTATTGTTAGC---CATTTTGAAA--AAAATCTCTCTGA---------------ATA--------G--------AT----AAT---T-GCGATATGTTTTTAAAGTATAG----TTG-TT----GGAGGCATATTTCACA---------------AT----TTT--TT---------------------GTACACCAGATCGATTTCGACTGTTTTTAAATACTGATTCTCAAGAATATTCATAAATGTTGAAATCAAT-C--CGTT-TCCCATC-CATTTTTT-G-GCATGGTTGCAAGTTGGTGTGAAT--AAAAAATTTGTT
gi|11 : acagTCTTCCACT---ATAGTAGCTATTTATA------A-ACAT---AG-G-C-------A-CGCA------CT-------------C-----CA----A-GAATCACGTGAACAAATTATGGCAACATCATTGGC---CATTTTGAAA-AACAACCT----GA---------------ACC--------A--------GT----TTT---T-ACAATATATTTTTGAAAAATAAAG--TCG-TT----GGGGGCATATTTCACATATA------TATATATAAAATTT--AT--C---TATATT------TTAGTATACTAAATCAATGTCAAGTGTTT
gi|12 : atcacacttgcattatgtaaaaacaacAATATTTATAAATGATGAAATCAAC-C--C-TTTCCCCATT-CATGACTC-G-TC--GGTAGCCATATGATATAAACTAAGCAAATTT-TTTTGTAAATTTTCAAAT-A-AATTGTTTTTTATATTCAATGCGCAATGCATGGATTAATACAGTTACATTATGATCAGTGCGCTGGAACTTGGAAGTTGACTTCTGACATTAT-CGTTTTCCCGGTATTATTATGTTATAACTGTTTTATACAGATGCAAAAACAT-ATTTTGAAAAATGAACTGGAAGTGAACCgcaaattaatgtgaataaaaactttttttttgtttttgaatgttcaaacaacatt
gi|13 : -CTAAAATGTTTGTTCTTTTGACATTTCGATATTAAAATGTTAGAGTTCGTTGTCCTGTCCTCTTTGGTTTAGGCAGAGACATATAAACAAT--TAATTAAGTCACTGGTTTAGGCAAGCAATTATAAGGCTGGAGGACCCATCTTCCGCTTTAATAGTAGCTATTTATA------AGCCGC---CC-C-C-------TCCCCC-AC---CC-------------CACTTTCATCTTATAAATCACGTAATTAAATTATAGCGTTATCGTCGGCAATCATTTTGAAACAAAAATCT----AA---------------ACA--------G--------AT----ACT---T-A--------TTta
gi|14 : AATCACATGATCAAATTATGGTGTCTTTGTCAGC---CATTTTGAAA-GACAACCT----GA---------------ACA--------T--------ATTATTACTGTATGA--------TTTTGAAAAATAAAG--TCG-TT----GTGGGCATATTTCACAAATGATTGTTT---TAT----TTT--TT--C---TATATTTTAGTGCCGGTATTCTAAATCAATTTGGAGTGTTTTTGAATGCTGTTTCTCAAGAATAATCACAAATGTTGAA----------C-TT-----ATT-------TG-G-CA-TGGTTGCAAATTAATTTGAATAAAAA
gi|15 : aatgcaggcacgcactacgagTAGCTATTTATA------A-AGGC---AG-A-C------------AGAC---CT-------------C-----CA----A-GAATCACATGCTCAAATTATAGCTTTATCGTCctt
gi|15 : aacA---TCG-TC----TCAT--ATATCT--CATAAAATTGCTTA-A-AT----TGT--TTT-C---TATATTTA------AGTATACCTGATCCATTTCAAGTGTTTTTGAATACTTATTATCAAGAATATTCATAAATGTTGATATCAAA-CTGT-TT-CACCATC-CATTATTT-G-GCATGGTTACAAACTGtcatatatctcataaaattgcttaaattgttttctatatttaagtatacctgatccatttcaagtgtttttgaatacttattatcaagaatattcataaatgttgatatcaaactgtttcaccatccattatttggcatggttacaaactg
gi|16 : aactagctatttataaaggcagacagacctccaagaatcacatgctcaaattatagctttATCGATTTCAAGGGTTTTTGAATGCTGATTTTCAAGAATAATCACAAATGTTGAAATAAACAC--T-TT-CCCTGTC-CATTATTT-GATA-TGGTTGCAAATTAATGTGAATAAAAAAAAATTTTTTT
gi|17 : aTTTTTGAGTA----TTCTCAAGAATAATTATAAACGTTACTATCAACAC--A-TT-CACCTTTCCATTATTCGG-TA-TGGTTGCAAATTAGTGCGA
gi|18 : AAATTAAAGCATCCTTGTTGG---TCATTTTGAAA-AATAATCT----GA---------------ACA--------G--------ATC---ATA---T-A--------TTTcgtattgcatgaaaggattttttt
gi|19 : cTTCGTGTAGA-AGAGACATATAAACAATTGTAATTAAGTCACTGCTTCAttgaaa
gi|2 : cACCAATATGATAGACACAACATTGTCGTTTGT----------GTTCTCGTGTTATCCTATAAA-CTAAAATGTTTGTTCTTTTGACATTTCGATATTGAAATGTTAGAGCTCATTTTC-----CTATTTGGTTTAGGCAGAGACATATAAACAAT--TAATTAAGTCACTGGTTTAGGCAAGAAATTATAAGTCTGGAGGACCCATCTTCCGATTAAATAGTAACTATTTATA------A-CCCC---AA-C-C-------C-C----AC---TC-------------C-----CATCCTATAAATTACGTAATTGAATTATAGTGTCGTCGTCGGCAATCATTTTGAAACAAAAATCT----AG---------------ACA--------G--------AA----ACT---T----------TTTAAAAAAA-ATA---TCA-TT----GTATGCATATTTCACATAAACTTTTTTACATAT----TTT--TTTATATATATATTTC----TCAGTATACAAGAATGATTACGAGTA-TTTTGTATACTGATTCTTAA----------AAATGATGAAATCAAC-C--CTTT-CCCCATT-CATTACTT-G-T--------CAAAATGATATGCATCAAAAAAATCNNNNNNNNNNNNNNNNNNNN-N-NNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT--------ACTTCTGGCA------TTTTTCCCGTTATTATGATATCATATTTGTTTTACACAGATGCAAAAACAT-ATTTAGAAAAATGCACTAGAAGTGAAaatg
gi|20 : tgGTATATGCAGAGACGTATAAACATG--CAGTTAAGTCACTGGTtgta
gi|3 : tCCAATATGATAGACACAACTTTGCCGTGTGT----------GTTC----------CTATAAA-CAAAAATGTTTAATCTTTTGACATTTCGATATTGCAATGTTATAGCCAATTGTC-----CTATTTGGTTTAGGCAGAGACATATAAACAAT--TAACTGAGTCACTGGTTTTGGCAAGTCATTATAAGTCTGTAGGACACATCTTCAGCTTTAATAGTAGCTATATAAA------A-CCCC---C-------------------AC---TC-------------C-----CATCCTATAAATTACGTAATTAAATTATAGCGTCGTCGTCGGCAATCATTTTGAAACAA-----------------------------------------------AT----ACT---T-A--------TTTAAAAAA--AAA---TCA-TT----GTATGCATATTTAACATATACTTTTTTACATAT----TTT--TTTAC---TATATTTC----TCAGTATACAAGATTGATTACGAGTATTTTTGAGCACTGATTCTTACAAATATTTATAAATTATGAAATCAAC-T--C-TT-TCCCATC-CATTACTC-G-TC--GGTAGCAAAATGATATCAATAAAAAAAATTCGTTTTGTAAATTTTCAAATAA-AATTGGTTTT-ATATTCAATGTGCAATGCATGGATCCCTACAGTTATGTTATGATCTGTGCGCTGGAACTTGGAAGTTGACTTCTGACATTATATTTTTTCCCGTTATTATTATGTTATACATGTTTTACACAGATGCAAAAACAT-ATTTTGAAAAAAGCACTAGAAGTGAACC
gi|4 : gACCAATATGATAGACAAAACATTGCCGTGTGT----------GTTC----------CGATAAAACTAAAATGTTTGTTCTTTTGACATTTCCATATTAAAATGTTAGAGCTCATTGTC-----CTCTTTGGTTTAGGCAGAGACATAAAAAC------AATTAAGTCACTGGTTTAGGCAAGTAATTATAAGTCTGGAGGACCCATCTTCCGCTTAAATAGTAGCTATTTAT-------A-CC--------C-C-------T-CCCC-AC---CC-------------C-----CACCCTAAAAATCATGTAATTAGATTATAGCGTCATCGTCGGCAATCATTTTGAAACAAAAATCT----AA---------------ACA--------G------------------------------------AAAAACAAA---TCA-TT----ATATGTATATTTAACATATACTATTTTACATA------TT--GTTGT---TATATATC----TCAGTATACGAGATTGATTACGAGTATTTTTGTATACTGATTCCTAAAAATATTTATTTATGTTGAAAGCAAC-C--T-TT-CCCCATT-CATTACTC-G-TC--GGTAGCAAAATGATATGAAT-AAAAAAATTCGTTTTTAAAATTTATAAAT-GAAATTGGTTTT-ATATTCAATGCGCAATGCATGGATTCGTACAGATATATTATGATCTGTGCGCTGGAACTTTGAAGTTGACTACTGGCATTA--TTTTTTCCCGTTATTATTTTGTTATACTTGTTTTACACAGATGCAAAAACAT-ATTTTGAAAAATGCACTGGAAGTGAACCtaa
gi|5 : tgACTAAAATGATAGGTACAACATTGCCGTGTGTGTTCTCGTGTGTTC----------CTATAAA-CTAAAATGTTTGTTCTTTTGACATTTCGATATTGAAATGTTAAAGCCCATTGTC-----CTATTTGGTTTAGGC--AGACATACAAACAAT--TAATTAAGTCACTGGTTTAGGCAAGTAATTATAAGTCTGGAGGA-----------CTTTAATAGTAGCTATTTATA------A-TCCC-----------------------AC---CC-------------T-----CATCTTATAAATTACGTAATTAAATTATAGCGTTGTTCTCAGCAATCATTTTGAAACAAAAATCT----AA---------------ACA--------G--------AT----ACT---T-A--------TTTAAAAAA--AAA---TCA-TT----GTATGCATATTTAACATATACTTTTTTACATA-----TTT--TTTGC---TATATTTC----TCAGTATACAAGATTGATTATGAGTACTTTTGTATACTGATTCTTAAAAATATTT-TGAATGATGAAATCAAC-C--C-TT-CCCCATT-CATTACTC-G-TC--GGTAGCAAAATTATATGAATAAAAAAAtga
gi|6 : tgACCAATATGATAGACACAACATTGCCGTGTGT----------GTTC----------CTATAAA-CTAAAGTGTTTGTTCTTTTGGTATTTCGATATTGAAATGTTAGAGCTCATTGTC-----CTCTTTGGTTTAGGCAGAGACATATCAACAAT--TAATTAAGTCACTGGTTTAGGCAAGTAATTATAAGTTTGGATGACCCATCTTCCGCTTTAATAGTAGCTATTTATAACCTCTA-CCCC---CA-C-C---------CCCA-CCCCACC-------------C-----CATCCTATAAATCACGTAATTAAATTATAGCGTCAACGTCGGCAATCATTTCGTAACAAAAACCT----AA---------------ACA--------G--------AT----ACT---T-A--------TTT-AAAAAACAAA---TCA-CT----GTATGCATATTTAACATATACTTTTTTACGTA-----TGT--TTTGC---TGCATTTC----TCAGTATGCAAGATTGATTACGAGTATTTTTGTAAACTGATTCTTAAAAATATTTATAAATGATGAAATCAAC-C--C-
gi|7 : ACCAATATGATAGACACAATATTGCTGTGTGT----------GTTC----------CTATAAA-CTAAAATGTTTGTTCTTTTGACATTTCGATATTG
gi|7 : ATTGGTTTAGGCAAGTAATTATAAGTCTGGAGGACCCATCTTCCGCTTTTATAGTAGCTATATATACCTTC-A-CCCC---CA-C-CCATACACT-CCCA------CC-------------C-----CATCCTATAAATCACGTAATTAAATTATAACGTCATCGTCGGCAATCATTTTGAAACAAAAATCT----AA---------------ACA--------G--------AT----ACT---T-A--------TTT-AAAAAATAAA---TCA-TT----GTATGCATATTTAACATATACTTTTTTAC---T----TGTAATTTGC---TATATTTC----TAAGTATACAAGATTGATTACGAGTATTTTTGTATAC----------AAATATTGATAAATAATGAAATCAAC-C--CTTT-CCCCATT-CATTgtttaggcaagtaattataagtctggaggacccatcttccgcttttatagtagctatatataccttcacccccacccatacactcccaccccatcctataaatcacgtaattaaattataacgtcatcgtcggcaatcattttgaaacaaaaatctaaacagatacttatttaaaaaataaatcattgtatgcatatttaacatatacttttttacttgtaatttgctatatttctaagtatacaagattgattacgagtatttttgtatacaaatattgataaataatgaaatcaaccctttccccattcatt
gi|8 : accaatatgatagacacaatattgctgtgtgtgttcctataaactaaaatgtttgttcttttgacatttcgatACACAACATTAGCGTGTGT----------GTTC----------TTATAAA-CAAAAATGTTTGTTCTTTTGACATTTCGATATTGAAATGTTAGAGCTCATTGTC-----CTCT--GGTTTAGGCAGAGATATATAAACAAT--TAATTAAGTCACTGGTTTAGGCAAGTAATTATATGTCTGGAGGACTCATCTTCCACTTTAATAGTAGCTATTTATA------C-CCCC---TC-C-C-------A-CACACAC---ACACACACACACATAC-----CATCCTATATATCACGTAATTAAATTATAGCGTCATCGTCG---AT-ATGTTGAAGCGACAGTGT----AAGGATTGCATGTTGGCGCA--------GTAATTTTCAT----GAT---T-A--------TTAACAATAATCAACTTTCACTT----TTATA-ATGTTTAGCATTTACTTTTTT
gi|9 : acTCTTCCGCT---ATAGTAGCTATTTACA------A-ACAC---AG-G-C--------------AC---AC-------------G-----C-TCCGA-GAATCACGTGGTCAAATTATGGCATCATTATCGG---TCATTTTGAAA--GACATCT----GA---------------ACATATTTTACG--------AT----ATG---T-T--------TTTAAAAAA-TAAAG--TCG-TTTGGGGT---CATATTTCATACATAATAGTTT---TAT----TCT--CT--C---TATAGTTT------AGTA-ACC---TCGATT-------TTTTTTAATGCTGATTCTTAAGAATAATCACAAATGTTGAAATGAAC-C--CTTT-CTCTGTC-CATTATTT-G-GCGTGGTTGCAAATTA--ATGA--AAAAAAAATT