lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 7 1 2 1 2 4 0 2 33 333 2 2 33 5555 4 2 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555
lowQualScore : . . . . . . . . .. ... . . .. .... . . ...........................................................................................
lowQualScore : 3 1 5 0 4 1 6 2 11 999 2 4 22 0000 7 5 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
consensus : ACAAGAGCTGTCGGAGGACAGCGCGCTCGAC-TTTTGGAAGC--TT---GTC-T-CAA--AAC----AATAG-CTATTG--G---ATGAC--G------G-----AGCACTGGACACT-ATATG--GT-----C----T-CTGTCTCAA-----------AAATNTCAATGCACAGTATGACTAG
Reference ( gi|5 ) : ACAAAATCTGTTGGAGGACAGCATGTTCAAC-TTCTGGAAAC--TT---GTC-T-CAA--AAC----AGTAG-CTGCTG--G---AAGAC--A------A-----AGCACTTGACACTGATATT--GT-----C----T-CTGTCTCAA-----------AAACA-CAATGCACAGTATGACTAG
gi|7 : ACAAGAGCTGTTGCTGACCAGCACACTCGAC-TTTTG-AGACGTTT---TTC-T-TAA--AAC----AACAGAC--CTG--G---ACAAT--A------ATAAGAAGCA--------------------------------TGTCTCAA-----------AA-CATCAATGCACAGTATAACTAG
gi|9 : tgACAAAAGCTGTCGAAAGACAGCGAACTCGTC-TTC-GGAAGC--TT---ATC-T-CA---AAT----AAAAG-CTTTTG--G---AGTAC--G------G-----GGAACTGAACATTAACATtggttac
gi|4 : aACAAGAGCTGTTGAAGGACATCTCGCTAGAC-TTTTGAAATA--TT---GTCGT-GGA--AAG----A-TAG-TTATAG--G---ATGAC--G------GG----AGAACT-GAC-CT-ATATT--TT-----AAGG-T-CTGTA--AA-----------AAATATCGATGCACAACATGACTGGggaaactggtataaaaatctgtcacaatgaaa
gi|10 : ACAAAG-CTGTCAGAGGACAGTCTGTTCAAA-TTTGGGAAGC--TT---A---T-CAA--AAC----AAAAG-C-AC---------AGAC--A------G-----AAAACTGGGCGCTTATATG--AA-----A----A-CTGTCAGTA-----------AAATC-CAATG-ACA--ATGAtgg
gi|17 : ACAAGAGCTGTCAGTGGATAGCATGTTTAAT-GTTT-GAAAC--TGCAAGCC-C-CAA--AAT----AATAG-CTATTG--A---ATGAC--A------aaa
gi|14 : tacaataACAAGACTTGTCAGAGGACAGCACACTTCAC-TTTAGGAAAC--TT---GTC-
gi|6 : acagaatagttcacactgagatttgtttagaagaccttaaatgaAAAGCTGATAAAGGACAGCATGTTCAAC-TTTTGAAAGC--TT---GCA-T-CAA--ACC----AGAAA-CTATCA--A---ATGAC--A------G-----AGGACTATACATTAATATGAAGC-----C----T-TTCTC-CAA-----------AATTT-CAATGCACAGTATGA
gi|1 : CTGTCGGAGGACAGCATGCTCTAC-TTTTTAAAAC--TC---GTC-T-CAA--ACCTGGGAATAG-CT--TG--G---ATGAC--AGAAATTA-----GGCAATT-ATAATTATGTT--GT-----A----TGCTGT---AA-----------AAAg
gi|12 : aatagaatagttcatgactagtttcaaatcatcctcattaaaatgaaaaagagagCTATCAGAGGACAACTCACTGGAC-ATTTTGAAGC--TT---GTC-T-CAA--AAC----AATAG-CTtct
gi|2 : ttatataagtataactaccgTGTTGGAGGACAGTGCACTTAAC-TTTTGAAAGC--TT---GTC-T-CAA--AGC----AGTAA-CTATTA--G---CTGAC--A------G-----A--ACTGGACA---ATATT--ATGGAACC----T-GTGTTT---------------------AGTGCACAGTACGACTAGaaaagttgactgagaactggac
gi|18 : acgcttaatttataagatatttaacagtTGTTAGAGGACAACACGTCCAAC-GTTTGATAAC--TT---GTC-TGCCATTAAT----ATTAG---GC-G--G---AAGTC--G------A-----Ataga
gi|20 : ctatacataaGTTGGTTGACAGCACGCTCGAC-ATTTGGATGC--TT---TTC-T-TAA--AAT----A
gi|8 : cacgaGAGGACAGCGCGTTCGACATTCTG-AAAC--TT---GTC-T-CAA--AAC----AGTAG-CTATCG--GACTAATAT--G------A-----AGCAa
gi|16 : acacacatttattttatagctgtatgtatactaagagaggtgaGAGAGAGTGTTCGAC-TATTGGTAGC--TT---GTC-T-AAA--AAC----AATAG-CTGTCT--G---ATGAG--A------A-------CACTGGACACTAAAATG--AA-----G----C-CTGTCTAAA-----------AAtgctagaaatatc
gi|13 : ACAGCACA---AAC-TTTAAGAAGC--TT---GTC-A-CAA--AAC----AATAG-CTGCTGCTG---ATGACTGA------A-----A--ACTGGACA---ACA----GT-----C--------------------------------CAGTGCACAGTATGAATAG
gi|11 : cATGCCTGAC-TTTTGGAAGT--GT---GTC-T-CAA--AAC----AGTTG-CTACTG--G---ATGAC--G------A-----AGTACTGAACA---ATATT--A------CAAAGT-CTGTCTCAAGCCTGACTTGAAAGTT-CAATGCATAGTtga
gi|3 : TCAAC-TTTTTGACTC--TT---GTC-T-CGA--AAC----AACAG-CTA-TG--G-------C--A------T-----G--ATTGGACACTCATATG--GT-----
gi|15 : caagtcgttctttaaactatatacaacaggagctgtcaaaagatattgatcAGC--TT---GTC-T-AAA--AAC----AATAG-TTGTTT--G---AAGAC--A------G-----ACCACTAGAC---GATATG--AA-----C----C-TTGT-TC-------------AAACATCTTTACATAGTACGACAAGgcatgctataaacaatagctatga
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|19 ): TGGACAATAAAAACAAGCCTGTATCAAAAATTAATTGCACAGTATCTAATTGTGGTTACTGAGATGA
Unaligned ( gi|21 ): CAGCCTTATGTCTCAAAATACAACAAACAGTATGCCTATTG
Unaligned ( gi|22 ): GCCTGTCTAAAACAATAACTGTCTGATGAGAACACTG
Unaligned ( gi|23 ): ACAGTTACATATTTTATTCTTTGAGAGTTGTTA
Alignments
lowQualScore : 111111 444444444444444444444444444444444444444444444444444444444
lowQualScore : 0 2 0 2 22 4444 1 5555 2 444444 888888888888888888888888888888888888888888888888888888888
lowQualScore : . . . . .. .... . .... . ...... .........................................................
lowQualScore : 2 9 7 2 88 7777 2 2222 5 333333 444444444444444444444444444444444444444444444444444444444
consensus : ACAAGAGCTGTCGGAGGACAGCGCGCTCGACTTTTG-GAA--GCTTGTCTCAAAAC----AATAGCTATCG--GAT-GAC-GGAGNACTGGAC-------AC-T-A-TAT-----GGANC-CTGTCTCAA----------AAATCT----CAATGCACAGTATGACTAG
Reference ( family-1046 ) : ACAAGAGCTGTCGGAGGACAGCGCGCTCGACTTTTG-GAA--GCTTGTCTCAAAAC----AATAGCTATTG--GAT-GAC-GGAGCACTGGAC-------AC-T-A-TAT-----GGTCT-CTGTCTCAA----------AAATNT----CAATGCACAGTATGACTAG
gi|1 : AGAGCTGTCGGAGGACAGCATGCTCTACTTTTT-AAA--ACTCGTCTCAAACCTGGGAATAGC--TTG--GAT-GAC-AGAA-ATTAGGCAATTATAAT-T-A-TGT-----TGTATGCTGT---AA----------AAATCT----
gi|10 : aatagaatagttcatgactagtttcaaatcatcctcattaaaatgaaaaagACAA-AGCTGTCAGAGGACAGTCTGTTCAAATTTGG-GAA--GCTTA--TCAAAAC----AAAAGC--------ACAGAC-AGAAAACTGGGC-------GCTT-A-TAT-----GAAAA-CTGTCAGTA----------AAATC-----CAATG-ACA--ATGA
gi|11 : GCCTGACTTTTG-GAA--GTGTGTCTCAAAAC----AGTTGCTACTG--GAT-GAC-GAAGTACTGAAC-------AA-T-ATTAC-----AAAGT-CTGTCTCAAGCCTGACTTGAAAGTT----CAATGCATAGTaaa
gi|12 : atGCTATCAGAGGACAACTCACTGGACATTTT-GAA--GCTTGTCTCAAAAC----AATAGCTAAAA--GTT-GAC-TGAGAACTGGAC-------
gi|13 : ttatataagtataactaccACAGCACA---AACTTTAA-GAA--GCTTGTCACAAAAC----AATAGCTGCTGCTGAT-GAC-TGAAAACTGGAC-------A-------AC-----AGTC-------------------------------CAGTGCACAGTATGAATAG
gi|14 : cACAAGACTTGTCAGAGGACAGCACACTTCACTTTAG-GAA--ACTTGTCtga
gi|15 : acagaatagttcacactgagatttgtttagaagaccttaaatgaA--GCTTGTCTAAAAAC----AATAGTTGTTT--GAA-GAC-AGACCACTAGAC-------G----A-TAT-----GAACC-TTGT-TCAA----------ACATCT----T--TACATAGTACGACAAG
gi|16 : GAGAGAGTGTTCGACTATTG-GTA--GCTTGTCTAAAAAC----AATAGCTGTCT--GAT-GA---GAACACTGGAC-------AC-TAA-AAT-----GAAGC-CTGTCTAAA----------AAtgg
gi|17 : ACAAGAGCTGTCAGTGGATAGCATGTTTAATGTTTG-AAACTGCAAGCCCCAAAAT----AATAGCTATTG--AAT-GAC-
gi|18 : tacaataTGTTAGAGGACAACACGTCCAACGTTTG-ATA--ACTTGTCTa
gi|2 : ctatacataaAACAGTTGTTGGAGGACAGTGCACTTAACTTTTG-AAA--GCTTGTCTCAAAGC----AGTAACTATTA--GCT-GAC-AGA--ACTGGAC-------AA-T-ATTAT-----GGAAC-CTGTGT------------------T----TAGTGCACAGTACGACTAGgccattaatattaggcggaagtcgaa
gi|20 : acgcttaatttataagatatttGTTGGTTGACAGCACGCTCGACATTTG-GAT--GCTTTTCTTAAAAT----AAtaga
gi|22 : cacga--GCCTGTCT-AAAAC----AATAACTGTCT--GAT-GA---GAACACTG
gi|3 : ACAGGAGCTGTCAAAAGATATTGATCTCAACTTTTT-GAC--TCTTGTCTCGAAAC----AACAGCTATGG--CAT-G--------ATTGGAC-------AC-TCA-TAT-----GGT
gi|4 : caagtcgttctttaaactatatacaACAAGAGCTGTTGAAGGACATCTCGCTAGACTTTTG-AAA--TATTGTCGTGGAAA----GATAGTTATAG--GAT-GACGGGAGAACT-GAC--------C-T-A-TATTTTAAGGTCT-GTA----AA----------AAATAT----CGATGCACAACATGACTGGgcatgctataaacaatagctatga
gi|5 : ACAAAATCTGTTGGAGGACAGCATGTTCAACTTCTG-GAA--ACTTGTCTCAAAAC----AGTAGCTGCTG--GAA-GAC-AAAGCACTTGAC-------AC-TGA-TAT-----TGTCT-CTGTCTCAA----------AAACA-----CAATGCACAGTATGACTAGtgg
gi|6 : AAAGCTGATAAAGGACAGCATGTTCAACTTTTG-AAA--GCTTGCATCAAACC----AGAAACTATCA--AAT-GAC-AGAGGACTATAC-------AT-TAA-TAT-----GAAGC-CTTTCTCCA----------AAATTT----CAATGCACAGTATGA
gi|7 : ACAAGAGCTGTTGCTGACCAGCACACTCGACTTTTGAGAC--GTTTTTCTTAAAAC----AACA-------------GAC-------CTGGAC-------AA-TAA-TAA-----GAAGC-ATGTCTC-A----------AAACAT----CAATGCACAGTATAACTAGg
gi|8 : tgAAGAGAGGTGAGAGGACAGCGCGTTCGACATTCT-GAA--ACTTGTCTCAAAAC----AGTAGCTATCG--GAtggttac
gi|9 : acacacatttattttatagctgtatgtatactACAAAAGCTGTCGAAAGACAGCGAACTCGTC-TTCG-GAA--GCTTATCTC-AAAT----AAAAGCTTTTG--GAG-TAC-GGGGAACTGAAC-------AT-TAA-CAT-----GGAAA-CTGGTATAA----------AAATCTGTCACAATGctaatatgaagcatgctagaaatatc
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TGGACAATAAAAACAAGCCTGTATCAAAAATTAATTGCACAGTATCTAATTGTGGTTACTGAGATGA
Unaligned ( gi|21 ): CAGCCTTATGTCTCAAAATACAACAAACAGTATGCCTATTG
Unaligned ( gi|23 ): ACAGTTACATATTTTATTCTTTGAGAGTTGTTA
Alignments
lowQualScore : 11 2222 1111111 22222222222222222222222222
lowQualScore : 0 2 0 2 22 4444 1 8888 2 22 55 2 3333 6 5555555 2 33 22222222222222222222222222
lowQualScore : . . . . .. .... . .... . .. .. . .... . ....... . .. ..........................
lowQualScore : 2 9 7 2 88 7777 2 3333 5 88 55 9 4444 2 4444444 5 55 88888888888888888888888888
consensus : ACAAGAGCTGTCGGAGGACAGCGCGCTCGACTTTTG-GAA--GCTTGTCTCAAAAC----AATAGCTATCG--GAT-GAC-GGAGAACTGGAC-AC-T-A-TA-------TGAAGCCTGTCTCAA----------AAATC-T----CAATGCACAGTATGACTAG
Reference ( family-1046 ) : ACAAGAGCTGTCGGAGGACAGCGCGCTCGACTTTTG-GAA--GCTTGTCTCAAAAC----AATAGCTATCG--GAT-GAC-GGAGNACTGGAC-AC-T-A-TA-------TGGANCCTGTCTCAA----------AAATC-T----CAATGCACAGTATGACTAG
gi|1 : AGAGCTGTCGGAGGACAGCATGCTCTACTTTTT-AAA--ACTCGTCTCAAACCTGGGAATAGC--TTG--GAT-GAC-AGA-AATTAGGCAAT-T-A-TAATTATGTTGTATGCTGT---AA----------AAATC-T----
gi|10 : aatagaatagttcatgactagtttcaaatcatcctcattaaaatgaaaaagACAA-AGCTGTCAGAGGACAGTCTGTTCAAATTTGG-GAA--GCTTA--TCAAAAC----AAAAGC--------ACAGAC-AGAAAACTGGGC-GCTT-A-TA-------TGAAAACTGTCAGTA----------AAATC------CAATG-ACA--ATGA
gi|11 : GCCTGACTTTTG-GAA--GTGTGTCTCAAAAC----AGTTGCTACTG--GAT-GAC-GAAGTACTGAAC-AA-T-ATTA-------CAAAGTCTGTCTCAAGCCTGACTTGAAAGT-T----CAATGCATAGTaaa
gi|12 : atGCTATCAGAGGACAACTCACTGGACATTTT-GAA--GCTTGTCTCAAAAC----AATAGCTAAAA--GTT-GAC-TGAGAACTGGAC-
gi|13 : ttatataagtataactaccACAGCACA---AACTTTAA-GAA--GCTTGTCACAAAAC----AATAGCTGCTGCTGAT-GAC-TGAAAACTGGAC-A----A-CA---------------GTC-------------------------CAGTGCACAGTATGAATAG
gi|14 : cACAAGACTTGTCAGAGGACAGCACACTTCACTTTAG-GAA--ACTTGTCtga
gi|15 : acagaatagttcacactgagatttgtttagaagaccttaaatgaA--GCTTGTCTAAAAAC----AATAGTTGTTT--GAA-GAC-AGACCACTAGAC-G----A-TA-------TGAACCTTGT-TCAA----------ACATC-T----T--TACATAGTACGACAAG
gi|16 : GAGAGAGTGTTCGACTATTG-GTA--GCTTGTCTAAAAAC----AATAGCTGTCT--GAT-GA---GAACACTGGAC-AC-TAA-AA-------TGAAGCCTGTCTAAA----------AAtgg
gi|17 : ACAAGAGCTGTCAGTGGATAGCATGTTTAATGTTTG-AAACTGCAAGCCCCAAAAT----AATAGCTATTG--AAT-GAC-
gi|18 : tacaataTGTTAGAGGACAACACGTCCAACGTTTG-ATA--ACTTGTCTa
gi|19 : ctatacataaAGCCTGTATCAA----------AAAT--T----AATTGCACAGTATgccattaatattaggcggaagtcgaa
gi|2 : tggacaataaaaacaAACAGTTGTTGGAGGACAGTGCACTTAACTTTTG-AAA--GCTTGTCTCAAAGC----AGTAACTATTA--GCT-GAC---AGAACTGGAC-AA-T-ATTA-------TGGAACCTGTGT-------------------T----TAGTGCACAGTACGACTAGctaattgtggttactgagatga
gi|20 : acgcttaatttataagatatttGTTGGTTGACAGCACGCTCGACATTTG-GAT--GCTTTTCTTAAAAT----AAtaga
gi|22 : cacga--GCCTGTCT-AAAAC----AATAACTGTCT--GAT-GA---GAACACTG
gi|3 : ACAGGAGCTGTCAAAAGATATTGATCTCAACTTTTT-GAC--TCTTGTCTCGAAAC----AACAGCTATGG--CAT-G--------ATTGGAC-AC-TCA-TA-------TGG
gi|4 : caagtcgttctttaaactatatacaACAAGAGCTGTTGAAGGACATCTCGCTAGACTTTTG-AAA--TATTGTCGTGGAAA----GATAGTTATAG--GAT-GACGGGAGAACT-GAC--C-T-A-TATTT----TAAGGTCTG--TAAA----------AAATA-T----CGATGCACAACATGACTGGtgcatgctataaacaatagctatga
gi|5 : ACAAAATCTGTTGGAGGACAGCATGTTCAACTTCTG-GAA--ACTTGTCTCAAAAC----AGTAGCTGCTG--GAA-GAC-AAAGCACTTGAC-AC-TGA-TA-------TTGTCTCTGTCTCAA----------AAA-C-A----CAATGCACAGTATGACTAGtgg
gi|6 : AAAGCTGATAAAGGACAGCATGTTCAACTTTTG-AAA--GCTTGCATCAAACC----AGAAACTATCA--AAT-GAC-AGAGGACTATAC-AT-TAA-TA-------TGAAGCCTTTCTCCA----------AAATT-T----CAATGCACAGTATGA
gi|7 : ACAAGAGCTGTTGCTGACCAGCACACTCGACTTTTGAGAC--GTTTTTCTTAAAAC----AACA-------------GAC-------CTGGAC-AA-TAA-TA-------AGAAGCATGTCTCAA----------AA--CAT----CAATGCACAGTATAACTAGg
gi|8 : tgAAGAGAGGTGAGAGGACAGCGCGTTCGACATTCT-GAA--ACTTGTCTCAAAAC----AGTAGCTATCG--GAtggttac
gi|9 : acacacatttattttatagctgtatgtatactACAAAAGCTGTCGAAAGACAGCGAACTCGTC-TTCG-GAA--GCTTATCTC-AAAT----AAAAGCTTTTG--GAG-TAC-GGGGAACTGAAC-AT-TAA-CA-------TGGAAACTGGTATAA----------AAATC-TGTCACAATGctaatatgaagcatgctagaaatatc
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): CAGCCTTATGTCTCAAAATACAACAAACAGTATGCCTATTG
Unaligned ( gi|23 ): ACAGTTACATATTTTATTCTTTGAGAGTTGTTA
Alignments
lowQualScore : 11 222222222222222 22222222222222222222222222
lowQualScore : 0 2 0 2 22 4444 1 8888 2 22 55 2 111111111111111 2 11 22222222222222222222222222
lowQualScore : . . . . .. .... . .... . .. .. . ............... . .. ..........................
lowQualScore : 2 9 7 2 88 7777 2 3333 5 88 99 7 000000000000000 9 11 88888888888888888888888888
consensus : ACAAGAGCTGTCGGAGGACAGCGCGCTCGACTTTTG-GAA--GCTTGTCTCAAAAC----AATAGCTATCG--GAT-GAC-GGAGAACTGGAC-AC-T-A-TA-------TG-AAGCCTGTCTCAA----------AAATC-T----CAATGCACAGTATGACTAG
Reference ( family-1046 ) : ACAAGAGCTGTCGGAGGACAGCGCGCTCGACTTTTG-GAA--GCTTGTCTCAAAAC----AATAGCTATCG--GAT-GAC-GGAGAACTGGAC-AC-T-A-TA-------TG-AAGCCTGTCTCAA----------AAATC-T----CAATGCACAGTATGACTAG
gi|1 : AGAGCTGTCGGAGGACAGCATGCTCTACTTTTT-AAA--ACTCGTCTCAAACCTGGGAATAGC--TTG--GAT-GAC-AGA-AATTAGGCAAT-T-A-TAATTATGTTG-TATGCTGT---AA----------AAATC-T----
gi|10 : aatagaatagttcatgactagtttcaaatcatcctcattaaaatgaaaaagACAA-AGCTGTCAGAGGACAGTCTGTTCAAATTTGG-GAA--GCTTA--TCAAAAC----AAAAGC--------ACAGAC-AGAAAACTGGGC-GCTT-A-TA-------TG-AAAACTGTCAGTA----------AAATC------CAATG-ACA--ATGA
gi|11 : GCCTGACTTTTG-GAA--GTGTGTCTCAAAAC----AGTTGCTACTG--GAT-GAC-GAAGTACTGAAC-AA-T-ATTA-------CA-AAGTCTGTCTCAAGCCTGACTTGAAAGT-T----CAATGCATAGTaaa
gi|12 : atGCTATCAGAGGACAACTCACTGGACATTTT-GAA--GCTTGTCTCAAAAC----AATAGCTAAAA--GTT-GAC-TGAGAACTGGAC-
gi|13 : ttatataagtataactaccACAGCACA---AACTTTAA-GAA--GCTTGTCACAAAAC----AATAGCTGCTGCTGAT-GAC-TGAAAACTGGAC-A----A-CA----------------GTC-------------------------CAGTGCACAGTATGAATAG
gi|14 : cACAAGACTTGTCAGAGGACAGCACACTTCACTTTAG-GAA--ACTTGTCtga
gi|15 : acagaatagttcacactgagatttgtttagaagaccttaaatgaA--GCTTGTCTAAAAAC----AATAGTTGTTT--GAA-GAC-AGACCACTAGAC-G----A-TA-------TG-AACCTTGT-TCAA----------ACATC-T----T--TACATAGTACGACAAG
gi|16 : GAGAGAGTGTTCGACTATTG-GTA--GCTTGTCTAAAAAC----AATAGCTGTCT--GAT-GA---GAACACTGGAC-AC-TAA-AA-------TG-AAGCCTGTCTAAA----------AAtgg
gi|17 : ACAAGAGCTGTCAGTGGATAGCATGTTTAATGTTTG-AAACTGCAAGCCCCAAAAT----AATAGCTATTG--AAT-GAC-
gi|18 : tacaataTGTTAGAGGACAACACGTCCAACGTTTG-ATA--ACTTGTCTa
gi|19 : ctatacataaTGGAC-AA-T-A-AA-------AACAAGCCTGTATCAA----------AAAT--T----AATTGCACAGTATgccattaatattaggcggaagtcgaa
gi|2 : AACAGTTGTTGGAGGACAGTGCACTTAACTTTTG-AAA--GCTTGTCTCAAAGC----AGTAACTATTA--GCT-GAC---AGAACTGGAC-AA-T-ATTA-------TG-GAACCTGTGT-------------------T----TAGTGCACAGTACGACTAGctaattgtggttactgagatga
gi|20 : acgcttaatttataagatatttGTTGGTTGACAGCACGCTCGACATTTG-GAT--GCTTTTCTTAAAAT----AAtaga
gi|22 : cacga--GCCTGTCT-AAAAC----AATAACTGTCT--GAT-GA---GAACACTG
gi|3 : ACAGGAGCTGTCAAAAGATATTGATCTCAACTTTTT-GAC--TCTTGTCTCGAAAC----AACAGCTATGG--CAT-G--------ATTGGAC-AC-TCA-TA-------TG-GTGCATG
gi|4 : caagtcgttctttaaactatatacaACAAGAGCTGTTGAAGGACATCTCGCTAGACTTTTG-AAA--TATTGTCGTGGAAA----GATAGTTATAG--GAT-GACGGGAGAACT-GAC--C-T-A-TATTT----TA-AGGTCTG--TAAA----------AAATA-T----CGATGCACAACATGACTGGctataaacaatagctatga
gi|5 : ACAAAATCTGTTGGAGGACAGCATGTTCAACTTCTG-GAA--ACTTGTCTCAAAAC----AGTAGCTGCTG--GAA-GAC-AAAGCACTTGAC-AC-TGA-TA-------TT-GTCTCTGTCTCAA----------AAA-C-A----CAATGCACAGTATGACTAGtgg
gi|6 : AAAGCTGATAAAGGACAGCATGTTCAACTTTTG-AAA--GCTTGCATCAAACC----AGAAACTATCA--AAT-GAC-AGAGGACTATAC-AT-TAA-TA-------TG-AAGCCTTTCTCCA----------AAATT-T----CAATGCACAGTATGA
gi|7 : ACAAGAGCTGTTGCTGACCAGCACACTCGACTTTTGAGAC--GTTTTTCTTAAAAC----AACAG-------------AC-------CTGGAC-AA-T-AATA-------AG-AAGCATGTCTCAA----------AA--CAT----CAATGCACAGTATAACTAGg
gi|8 : tgAAGAGAGGTGAGAGGACAGCGCGTTCGACATTCT-GAA--ACTTGTCTCAAAAC----AGTAGCTATCG--GAtggttac
gi|9 : acacacatttattttatagctgtatgtatactACAAAAGCTGTCGAAAGACAGCGAACTCGTC-TTCG-GAA--GCTTATCTC-AAAT----AAAAGCTTTTG--GAG-TAC-GGGGAACTGAAC-AT-TAA-CA-------TG-GAAACTGGTATAA----------AAATC-TGTCACAATGctaatatgaagcatgctagaaatatc
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): CAGCCTTATGTCTCAAAATACAACAAACAGTATGCCTATTG
Unaligned ( gi|23 ): ACAGTTACATATTTTATTCTTTGAGAGTTGTTA
Alignments
lowQualScore : 11 222222222222222 22222222222222222222222222
lowQualScore : 0 2 0 2 22 4444 1 8888 2 22 55 2 111111111111111 2 11 22222222222222222222222222
lowQualScore : . . . . .. .... . .... . .. .. . ............... . .. ..........................
lowQualScore : 2 9 7 2 88 7777 2 3333 5 88 99 7 000000000000000 9 11 88888888888888888888888888
consensus : ACAAGAGCTGTCGGAGGACAGCGCGCTCGACTTTTG-GAA--GCTTGTCTCAAAAC----AATAGCTATCG--GAT-GAC-GGAGAACTGGAC-AC-T-A-TA-------TG-AAGCCTGTCTCAA----------AAATC-T----CAATGCACAGTATGACTAG
Reference ( family-1046 ) : ACAAGAGCTGTCGGAGGACAGCGCGCTCGACTTTTG-GAA--GCTTGTCTCAAAAC----AATAGCTATCG--GAT-GAC-GGAGAACTGGAC-AC-T-A-TA-------TG-AAGCCTGTCTCAA----------AAATC-T----CAATGCACAGTATGACTAG
gi|1 : AGAGCTGTCGGAGGACAGCATGCTCTACTTTTT-AAA--ACTCGTCTCAAACCTGGGAATAGC--TTG--GAT-GAC-AGA-AATTAGGCAAT-T-A-TAATTATGTTG-TATGCTGT---AA----------AAATC-T----
gi|10 : aatagaatagttcatgactagtttcaaatcatcctcattaaaatgaaaaagACAA-AGCTGTCAGAGGACAGTCTGTTCAAATTTGG-GAA--GCTTA--TCAAAAC----AAAAGC--------ACAGAC-AGAAAACTGGGC-GCTT-A-TA-------TG-AAAACTGTCAGTA----------AAATC------CAATG-ACA--ATGA
gi|11 : GCCTGACTTTTG-GAA--GTGTGTCTCAAAAC----AGTTGCTACTG--GAT-GAC-GAAGTACTGAAC-AA-T-ATTA-------CA-AAGTCTGTCTCAAGCCTGACTTGAAAGT-T----CAATGCATAGTaaa
gi|12 : atGCTATCAGAGGACAACTCACTGGACATTTT-GAA--GCTTGTCTCAAAAC----AATAGCTAAAA--GTT-GAC-TGAGAACTGGAC-
gi|13 : ttatataagtataactaccACAGCACA---AACTTTAA-GAA--GCTTGTCACAAAAC----AATAGCTGCTGCTGAT-GAC-TGAAAACTGGAC-A----A-CA----------------GTC-------------------------CAGTGCACAGTATGAATAG
gi|14 : cACAAGACTTGTCAGAGGACAGCACACTTCACTTTAG-GAA--ACTTGTCtga
gi|15 : acagaatagttcacactgagatttgtttagaagaccttaaatgaA--GCTTGTCTAAAAAC----AATAGTTGTTT--GAA-GAC-AGACCACTAGAC-G----A-TA-------TG-AACCTTGT-TCAA----------ACATC-T----T--TACATAGTACGACAAG
gi|16 : GAGAGAGTGTTCGACTATTG-GTA--GCTTGTCTAAAAAC----AATAGCTGTCT--GAT-GA---GAACACTGGAC-AC-TAA-AA-------TG-AAGCCTGTCTAAA----------AAtgg
gi|17 : ACAAGAGCTGTCAGTGGATAGCATGTTTAATGTTTG-AAACTGCAAGCCCCAAAAT----AATAGCTATTG--AAT-GAC-
gi|18 : tacaataTGTTAGAGGACAACACGTCCAACGTTTG-ATA--ACTTGTCTa
gi|19 : ctatacataaTGGAC-AA-T-A-AA-------AACAAGCCTGTATCAA----------AAAT--T----AATTGCACAGTATgccattaatattaggcggaagtcgaa
gi|2 : AACAGTTGTTGGAGGACAGTGCACTTAACTTTTG-AAA--GCTTGTCTCAAAGC----AGTAACTATTA--GCT-GAC---AGAACTGGAC-AA-T-ATTA-------TG-GAACCTGTGT-------------------T----TAGTGCACAGTACGACTAGctaattgtggttactgagatga
gi|20 : acgcttaatttataagatatttGTTGGTTGACAGCACGCTCGACATTTG-GAT--GCTTTTCTTAAAAT----AAtaga
gi|22 : cacga--GCCTGTCT-AAAAC----AATAACTGTCT--GAT-GA---GAACACTG
gi|3 : ACAGGAGCTGTCAAAAGATATTGATCTCAACTTTTT-GAC--TCTTGTCTCGAAAC----AACAGCTATGG--CAT-G--------ATTGGAC-AC-TCA-TA-------TG-GTGCATG
gi|4 : caagtcgttctttaaactatatacaACAAGAGCTGTTGAAGGACATCTCGCTAGACTTTTG-AAA--TATTGTCGTGGAAA----GATAGTTATAG--GAT-GACGGGAGAACT-GAC--C-T-A-TATTT----TA-AGGTCTG--TAAA----------AAATA-T----CGATGCACAACATGACTGGctataaacaatagctatga
gi|5 : ACAAAATCTGTTGGAGGACAGCATGTTCAACTTCTG-GAA--ACTTGTCTCAAAAC----AGTAGCTGCTG--GAA-GAC-AAAGCACTTGAC-AC-TGA-TA-------TT-GTCTCTGTCTCAA----------AAA-C-A----CAATGCACAGTATGACTAGtgg
gi|6 : AAAGCTGATAAAGGACAGCATGTTCAACTTTTG-AAA--GCTTGCATCAAACC----AGAAACTATCA--AAT-GAC-AGAGGACTATAC-AT-TAA-TA-------TG-AAGCCTTTCTCCA----------AAATT-T----CAATGCACAGTATGA
gi|7 : ACAAGAGCTGTTGCTGACCAGCACACTCGACTTTTGAGAC--GTTTTTCTTAAAAC----AACAG-------------AC-------CTGGAC-AA-T-AATA-------AG-AAGCATGTCTCAA----------AA--CAT----CAATGCACAGTATAACTAGg
gi|8 : tgAAGAGAGGTGAGAGGACAGCGCGTTCGACATTCT-GAA--ACTTGTCTCAAAAC----AGTAGCTATCG--GAtggttac
gi|9 : acacacatttattttatagctgtatgtatactACAAAAGCTGTCGAAAGACAGCGAACTCGTC-TTCG-GAA--GCTTATCTC-AAAT----AAAAGCTTTTG--GAG-TAC-GGGGAACTGAAC-AT-TAA-CA-------TG-GAAACTGGTATAA----------AAATC-TGTCACAATGctaatatgaagcatgctagaaatatc
blockSeqs : C A CT . A TGCT A GG AA . CTATATTT C AA CTCAAGCCTGACTTGAAAGTT
blockSeqs : T . . . A TG . A GT . CTTATA . GT TATAAAAATCTGTCA
blockSeqs : A . . . G AA . G GA . ATATTA . CC CTCCAAAATTT
blockSeqs : A . . . G TT . T AA . CTAAAA . GC CAGTAAAATC
blockSeqs : G . . . G CT . T CC . ATATTA . GC TCAAACATCT
blockSeqs : A . . . A TG . A AC . CTCATA . AC ATCAAAAATT
blockSeqs : A . . . A TA . A GA . CTGATA . GC TAAAAAATAT
blockSeqs : G . . . G CT . A AC . TTAATA . GT CTCAAAAACA
blockSeqs : A . . . A GG . G GA . ATAATA . CT CTCAAAACAT
blockSeqs : G . . . A AG . . GC . TTAACA . GC GTT
blockSeqs : T . . . G TG . . GG . ATAAA . GC C
blockSeqs : A . . . A CA . . GA . ACA . AA
blockSeqs : A . . . A CG . . . . ATA . .
blockSeqs : A . . . T TG . . . .
blockSeqs : G . . . . . .
blockSeqs : G . . . . .
blockSeqs : . . .
blockSeqs : .
blockSeqs : .
blockSeqCons : **** GN CTAATA********* CNNAAAANNT****************
originalCons : ACAAGAGCTGTCGGAGGACAGCGCGCTCGACTTTTG-GAA--GCTTGTCTCAAAAC----AATAGCTATCG--GAT-GAC-GGAGAACTGGAC-AC-T-A-TA-------TG-AAGCCTGTCTCAA----------AAATC-T----CAATGCACAGTATGACTAG
finalCons : ACAAGAGCTGTCGGAGGACAGCGCGCTCGACTTTTG-GAA--GCTTGTCTCAAAAC----AATAGCTATCG--GAT-GAC-GGAGNACTGGAC-ACTAATA---------TG-AAGCCTGTCNNAAAANNT----------------CAATGCACAGTATGACTAG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): CAGCCTTATGTCTCAAAATACAACAAACAGTATGCCTATTG
Unaligned ( gi|23 ): ACAGTTACATATTTTATTCTTTGAGAGTTGTTA
Alignments
lowQualScore : 111111 2222222222222222
lowQualScore : 0 2 0 2 22 4444 1 8888 2 444444 55 1 66666 4444444444444444 7777777
lowQualScore : . . . . .. .... . .... . ...... .. . ..... ................ .......
lowQualScore : 2 9 7 2 88 7777 2 3333 4 777777 66 3 88888 6666666666666666 8888888
consensus : ACAAGAGCTGTCGGAGGACAGCGCGCTCGACTTTTG-GAA--GCTTGTCTCAAAAC----AATAGCTATCG--GAT-GAC--GAGAACTGGACACTAATA---T-GAAGCCTGTC-TNA-----------AAANNT----CAATGCACAGTATGACTAG
Reference ( family-1046 ) : ACAAGAGCTGTCGGAGGACAGCGCGCTCGACTTTTG-GAA--GCTTGTCTCAAAAC----AATAGCTATCG--GAT-GAC-GGAGNACTGGACACTAATA---T-GAAGCCTGTC-NNA-----------AAANNT----CAATGCACAGTATGACTAG
gi|1 : AGAGCTGTCGGAGGACAGCATGCTCTACTTTTT-AAA--ACTCGTCTCAAACCTGGGAATAGC--TTG--GAT-GAC-AGA-AATTAGGCAATTATA---
gi|10 : aatagaatagttcatgactagtttcaaatcatcctcattaaaatgaaaaagACAA-AGCTGTCAGAGGACAGTCTGTTCAAATTTGG-GAA--GCTTA--TCAAAAC----AAAAGC--------ACAGAC-AGAAAACTGGGCGCTTATA---T-GAAAACTGTC-AGT-----------AAAATC----CAATG-ACA--ATGAattatgttgtatgctgtaaaaatct
gi|11 : GCCTGACTTTTG-GAA--GTGTGTCTCAAAAC----AGTTGCTACTG--GAT-GAC-GAAGTACTGAACAATATTA---C-AAAGTCTGTC-TCAAGCCTGACTTGAAAGTT----CAATGCATAGTaaa
gi|12 : atGCTATCAGAGGACAACTCACTGGACATTTT-GAA--GCTTGTCTCAAAAC----AATAGCTAAAA--GTT-GAC-TGAGAACTGGAC
gi|13 : ttatataagtataactaccACAGCACA---AACTTTAA-GAA--GCTTGTCACAAAAC----AATAGCTGCTGCTGAT-GAC-TGAAAACTGGAC---AACA------------GTC-------------------------CAGTGCACAGTATGAATAG
gi|14 : cACAAGACTTGTCAGAGGACAGCACACTTCACTTTAG-GAA--ACTTGTCtga
gi|15 : acagaatagttcacactgagatttgtttagaagaccttaaatgaA--GCTTGTCTAAAAAC----AATAGTTGTTT--GAA-GAC-AGACCACTAGAC---GATA---T-GAACCTTGTT-CAA-----------ACATCT----T--TACATAGTACGACAAG
gi|16 : GAGAGAGTGTTCGACTATTG-GTA--GCTTGTCTAAAAAC----AATAGCTGTCT--GAT-GA---GAACACTGGACACTAAAA---T-GAAGCCTGTC-TAA-----------AAAtgg
gi|17 : ACAAGAGCTGTCAGTGGATAGCATGTTTAATGTTTG-AAACTGCAAGCCCCAAAAT----AATAGCTATTG--AAT-GAC-
gi|18 : tacaataTGTTAGAGGACAACACGTCCAACGTTTG-ATA--ACTTGTCTa
gi|19 : ctatacataaTGGACAATAAAA---A-CAAGCCTGTA-TCA-----------AAAATT----AATTGCACAGTATgccattaatattaggcggaagtcgaa
gi|2 : AACAGTTGTTGGAGGACAGTGCACTTAACTTTTG-AAA--GCTTGTCTCAAAGC----AGTAACTATTA--GCT-GAC---AGAACTGGACAATATTA---T-GGAACCTGT-------------------GTT----TAGTGCACAGTACGACTAGctaattgtggttactgagatga
gi|20 : acgcttaatttataagatatttGTTGGTTGACAGCACGCTCGACATTTG-GAT--GCTTTTCTTAAAAT----AAtaga
gi|22 : cacga--GCCTGTCT-AAAAC----AATAACTGTCT--GAT-GA---GAACACTG
gi|3 : ACAGGAGCTGTCAAAAGATATTGATCTCAACTTTTT-GAC--TCTTGTCTCGAAAC----AACAGCTATGG--CAT-G--------ATTGGACACTCATA---T-GGTGCATGCT-ATA-----------AA
gi|4 : caagtcgttctttaaactatatacaACAAGAGCTGTTGAAGGACATCTCGCTAGACTTTTG-AAA--TATTGTCGTGGAAA----GATAGTTATAG--GAT-GACGGGAGAACT-GAC-CT-ATATTTT-AAGGTCTGT--AAA-----------AAATAT----CGATGCACAACATGACTGGcaatagctatga
gi|5 : ACAAAATCTGTTGGAGGACAGCATGTTCAACTTCTG-GAA--ACTTGTCTCAAAAC----AGTAGCTGCTG--GAA-GAC-AAAGCACTTGACACTGATA---T-TGTCTCTGTC-TCA-----------AAAACA----CAATGCACAGTATGACTAGtgg
gi|6 : AAAGCTGATAAAGGACAGCATGTTCAACTTTTG-AAA--GCTTGCATCAAACC----AGAAACTATCA--AAT-GAC-AGAGGACTATACATTAATA---T-GAAGCCTTTCTCCA-----------AAATTT----CAATGCACAGTATGA
gi|7 : ACAAGAGCTGTTGCTGACCAGCACACTCGACTTTTGAGAC--GTTTTTCTTAAAAC----AACAG-------------AC-------CTGGACAATAATA---A-GAAGCATGTC-TCA-----------AAACAT----CAATGCACAGTATAACTAGg
gi|8 : tgAAGAGAGGTGAGAGGACAGCGCGTTCGACATTCT-GAA--ACTTGTCTCAAAAC----AGTAGCTATCG--G-------------------ACTAATA---T-GAAGCATG-C-TAG-----------AAATAT----tggttac
gi|9 : acacacatttattttatagctgtatgtatactACAAAAGCTGTCGAAAGACAGCGAACTCGTC-TTCG-GAA--GCTTATCTC-AAAT----AAAAGCTTTTG--GAG-TAC-GGGGAACTGAACATTAACA---TGGAAACTGGTA-TAA-----------AAATCTGTCACAATG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): CAGCCTTATGTCTCAAAATACAACAAACAGTATGCCTATTG
Unaligned ( gi|23 ): ACAGTTACATATTTTATTCTTTGAGAGTTGTTA