lowQualScore : 1111111111111111111111111111111
lowQualScore : 3333 111 11 11 111 1111 11 2222222222222 33333333333333 22222222222222222222 55555555 1 1 1 4444444444444444444444444444444
lowQualScore : 8888 8 8 444 11 1 11 444 666 3 7777 0 5 0 33 66 6 4444444444444 3 2 55555555555555 1 44 3 666 44 0 0 22 0 88888888888888888888 0 4 1 99 1 0 88888888 6 5 5 4 3 5 5 5555555555555555555555555555555 6
lowQualScore : .... . . ... .. . .. ... ... . .... . . . .. .. . ............. . . .............. . .. . ... .. . . .. . .................... . . . .. . . ........ . . . . . . . ............................... .
lowQualScore : 5555 0 0 000 88 0 00 000 222 2 0000 8 0 8 66 22 7 0000000000000 0 4 11111111111111 4 66 1 999 22 3 6 99 5 33333333333333333333 1 5 7 22 8 8 00000000 0 0 7 7 5 7 0 0000000000000000000000000000000 0
consensus : AAAAAACTTTATTTTATGTAAAAGAAAATT-TG-AGTA---TAT-TATACAA--TA---TCTAATNGATATGAGTATT----GAAATGTCGATAGTAAGAGCGAATAC-GTGTGG----TGGGT-TGCGAGNGCGTACGT------------A-TGTATGCGTG--TG-TGTGTGCG--CGCG--TGCGCGCGTGCGTGCGTGTGTGTG----TGTG------------AAAATGTGTGCATGCT--ACTTACTCAACTTGTTATGTGTTTATGTGTTTAATTATTTACATGTTATTACAACATTGTAATTTGATGAGAAACTATGTATAGTTTAAATCAATAAAATA-TTCTTCTTCTTCTTCTTCTTCTTCATATAACCCTA--TAACATACTCCCTTT-TATTGATC
Reference ( gi|4 ) : AAAAAA--T-ATTTTATGTAAAAGAAAATT-TG-AGTA---TAT-TATACAA--TA---TCTAATAGATATGAGTATT----GAAATGTCGATAGTAAGAGCGAATAC-GTGTGG----TGGGT-TACGAGAGTGTATGT------------A-TGTATGCGTG--TG-TGTGTGCG--TGCG--TGCGTGCATGCGTGCGTGTGTGTG----TATG------------AAAATGTGTGTATGCT--ATTTACTCAACTTGTTAT--------GTGTTTAATTATTCACATGTTATTACAACATTGTAATTTGATGAGAAACTATGTATAGTTTAAATCAATAAAATA-TACTTCTTTTTCTTCTTATTATTAA-ATAA---TAATTAA-ATATTCATTTCACATTAATC
gi|3 : AAAAAA--TTATTTTATGTAAAAGAAAATT-TG-AGTA---TAT-TATACAA--TA---TGTAATTGATATAAGTATT----GAAATGTCGATAGTAAGAGTGAATAC-GTGTGG----TGGGT-TGCGAGAGTGTATGT------------A-TGTANNNNNN--NN-NNNNNNNN--NNNN--NNNNNNNNNNNNNNNNNNNNNNNN----NNNNNNNNNNNNNNNNAAAATGTGTGCATGCT--ATTTACTCAACTTGTTAT--------GTGTTTAATTATTTACATGTTATTACAACATTGTAATTTAATGAGAAACTATGTATAGTTTAAATCAATAAAATA-TTCTTCTTCTACT
gi|2 : gaagcatttgtaaaacgacgttccataataaataactgataaatgtgttcatcctcaAAAAACTT-AATTTATGTAAAAGAAAATT-TG-AGTA---TAT-TATACAA--TA---TCTAATGGATATGAGTATT----GAAATGTCGATAGTAAAAACGAATAC-GTGTGG----TGGGG-TGCGAGCGTGT-------------------------GTG--TG-TGCGTGCG--TGCG--TGCGTGCAT------GTGTGTGTG----TGTG------------AAAATGTGTGCATGCT--Aaa
gi|1 : gctgaaattgaagacgaattttattttgtattaccatgtcctatttaccatgaacttatatgcaaatatatttataagcattatatccgtagaccaaatatgtataagtttataaatcttcttaaatcaaaaaataaatccgaaattgttgaattaggcaaatttatatccgaagcatttgtaaaacgacgttccataataaataattgatcaatgggttcatcctcatTTTCATGTAAAAGGGAATTATG-GGTAGCCTATATATACAAACTAAAATCTAATCTATACGAGTACT----GAAATGTCGATAGTAAGCGCGAATAC-CCGTGG----TGG---TGCGCGAGCG--TGC------------A-TGTATACGTG--CG-TGTGT--------------GTATAT-----CATGTGT-----------------------AAA-------TATACTCAACTTGCTTCATATGTT-------------TTTAATTACTTACATGTTATTACAGTATTGTAATTTGATGAGAAACTATGTACAGTTTAAATCAATAAAATAGTA-GTCTTTT
gi|5 : ggctgaaatttaagacgaatttcattttgtactactatgtcctatttaccatgaacttagatatattcacaagcgttgtatccgtagcacaactatgttaaagtttattaatcttcttaaatcaaaaaataaattgttaaattaagcaaatttatttctgaagcatttgtcgaacgacgttccatagtaaatagctgataaatgtgttccccttaaacaacttTGTAAAAGAAAATT-TG-ACTA---CAT-----------A---CCAAATAAATCTAA---TT----TATATG-----AGTAA------------TGT--------------CGATAGTAAATGC---------------GAATACGTA--TGATG-GTGCG----CG--AGCGTGTATGTATGTGTGTGTGTA----TGTG------------AAAATATGTGCGTGTT--AGATACTCAACTTGTTAT--------GTGTTTAAATATTTACATTTTATTACAACATTGTAATTTGATGAGAAACTATGTATAGTTTAAATCAATAAAATA-TGCTTCTTCTTCTTCTTCTTCTTataattacga
gi|7 : tccatcgtaaccatttctttaagtgttcattctcaaaagTGTAAAAAAAGAAT-AGCAGAA---TTT-CATATTA--TA---ACTAA-AATTGTGTATACTTTCAGAAGCGTT-ATA-T----GCG--TACTGTGTGGAGTATGGAC-TGCGCGCGCGTGCGT-------------------GCGTG--TG-CGTGTGCG--CGCG--CGTGTGTGTGTGTGTGTGCATGCGCC--TGTG------------AAAcatgccgtatatctccacttaattcactttactgaact
gi|12 : aactgatctcTAT-GTGTG-----TGCGTGTGCGAGCGCGTACGTTCGTGTGCGCATA-TGTATGTGTGATTG-TGTGTACG--TGCG--TGTGCGCGCATGTGCGTGTGTGTG----Ttgacaagtaacaataatacaaacaataaacattcaatttatttgtattttatctaatg
gi|16 : TGTGTGT------------G-TGCGGGCGTG--CG-TGTGTGCG--TGTGTTTGCGCGCcaacaatcatggtagttcacacccgttttactttatactccaaataaacatacaatttaattg
gi|7 : GTATGG------------ACTGCGCGCGCG--TG-CGTGCGTG--TGCG--TGTGCGCGCGCGTGTGTGTGTGTG----TGTG------------gaatatgaatgttgtatccatt
gi|17 : aactgatctctgtaaaaaaagaatagcagaatttcatattataactaaaattgtgtatactttcagaagcgttatatgcgtactgtgtggaTACAT------------G-TGTGTGTGTG--TG-TGTGTGCG--TGCG--TGCGTGTAcatgcgcctgtgaaatgacaagtaacaataatacaaacaataaacattcaatttatttgtattttatctaatg
gi|12 : aatgcactagtataaaacaaaaTATGTGTG--TG-CGTGTGCGAGCGCG--TACGTTCGTGTGCGCATATGTATG----TGTG------------AT--TGTGTGTACGat
gi|17 : ATACATG--TG-TGTGTGTG--TGTG--TG--TGCGTGCGTGCGTGTtgcgtgtgcgcgcatgtgcgtgtgtgtgtcaacaatcatggtagttcacacccgttttactttatactccaaataaacatacaatttaattg
gi|16 : aatgcactagtataaaacaaaTG--TG-TGTGTGCG--GGCG--TGCGTGTGTGCGTGTGTTTGCGCGCGAATATG--------------AATGT-TGTAT-CC--ATTaat
gi|18 : G-TGTGCGCG--CGCG--CGCGCGCGCGCGTGTGTGTGTGTG----TGT----------------ACGTACGTAT
gi|15 : TA------------AAAATGTTTGCATATT--ACTTACTCAACTTGTTATGTGTTTATGTGTTTAATTATTTACATGTTATAACAACAATGTAATTTGATGTAAAACTATGTATAGTTTAAATCAAAAAAATA-Tttga
gi|11 : TTACTCAACTTGTTATGTGTTTATGTGTTTAATTATTTACGTGTTATTACAACATTGTAATTTGATGAGAAACTATGTTTAGTTTAAATCAATAAAATA-TTCTTCTTCATCTTCTTCTTCTTCATATAACCCTA--TAACATACTCCCTTT-TATTGATCt
gi|10 : GATGAGAAACTGTA-ATAGTTTAAATCAATAAAAAA-T-CTTCGTCTTCTTC
gi|14 : atgaatttttgtatatatgtgattgagagctatatatatgttaaacatttgtaactgttaaaatttatacattgatttgtcacgtaaatgtactgtatatgttttataGATGAGAAACTGTA-ATAGTTTAAATCAAT-AATTT-TTCTTCTTCTTTTTCTTTTT
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|6 ): TGACACTGAAGACAAATATCATTTTGTTTTTATATGCCAAACATATAGAGAAAATAGAAGTAAATATATTAAACGATTTTATAAACAGAGACTTAACATGTGGATATTTTTTTTTTATCTCCTCTTCAATCAAGAAGCAATGAATTAATCATAAATTATAGTAAATTTCTTTCAGAAGCATTATGTAAAAGACGTTCCATAATAAACAACCAATAAGTGTTCATCCTCTTTTGATATTGATTTTTTTATATAATTAATATAAAACAAAATAAAATTACCGTTTACTTAATA
Unaligned ( gi|8 ): TAACGATATTGAAGATGAATTTCAATTTGTTTCAGTGTGTTCCAGGTGTAATGATATAAGAATTATATTGATAAGTATAATATGTTAGAAGGCCAAGTATGTTTAATTTTTATCATTATTACAATAGTTTGTAGAACAAAACTGAACTTAGCAAATATATATCGGAAGCTTTAGAAATTCGACGCTCTATTCCAATCTTTATTT
Unaligned ( gi|9 ): TCTTCTCCAATCAGCAAACAATAAAGAAATATTAAATCTAATACATTTCTTATAGAAGCATTGTGTAAAAGACGTTCCATTATCAATAACCAATAAACGTTCATTCTTCTTTGATATTGATCAATTATATCTAACATAGTACATAATGAAATTTCCTTCTTACTTAAAAA
Unaligned ( gi|13 ): ATTTATACATGAGTTTATATACGGAGATCAAATATGATAATCTTTTTATCTCTCCTTCAATCAATAAATAATTAAAATAATTCATAAGTGTTTGTAATTTCTTTATGCAATTTCATGTAAATGATGCTCTATGATAAAGAGATGATAAAGTTCAT
Alignments
lowQualScore : 11 111 11 11 22222222 111111 11111 2222222222222 222222222222222222 11 3333333333333333333 1
lowQualScore : 88 3 7 6 6 111 55 7 3 33 3 55555555 2 000000 66 55555 888888 55 1 3 6666666666666 0 1 666 4 55 1 22 777777777777777777 77 55 1 99 5 00 3 0 0 6666666666666666666 6 3 3 3
lowQualScore : .. . . . . ... .. . . .. . ........ . ...... .. ..... ...... .. . . ............. . . ... . .. . .. .................. .. .. . .. . .. . . . ................... . . . .
lowQualScore : 00 2 0 7 7 777 88 3 5 00 2 55555555 5 888888 44 11111 999999 77 7 4 4444444444444 1 6 333 2 00 2 00 888888888888888888 44 22 7 22 2 33 2 1 2 0000000000000000000 7 7 7 3
consensus : AAAAAACTTTATTTTATGTAAAAGAAAATT-TG-AGTA---TAT--TATACAATATCTAAT-GATATGAGTAT----T--GAAATGTCGATAGTAAGAGCGAATAC-GTGTGG----TG--GGT-TGCGAGCGCGTACGT------------ATGTATGCGTG--TGTGTGTGCGCG--CGTGCGCGCGCGCGTGCGTGTGTGTGTGTG------------AA----AATGTGTGCATGC-TACTTACTCAACTTGTT--ATGTGTTTATGTGTTTAATTATTTACATGTTATTACAACATTGTAATTTGATGAGAAACTATGTATAGTTTAAATCAATAAAATATTCTTCTTCTTCTTCTTCTTCTTCATATAACC-TA--TA-----ACATANTCCNTTT-TATTGATC
Reference ( family-947 ) : AAAAAACTTTATTTTATGTAAAAGAAAATT-TG-AGTA---TAT--TATACAATATCTAATNGATATGAGTAT----T--GAAATGTCGATAGTAAGAGCGAATAC-GTGTGG----TG--GGT-TGCGAGNGCGTACGT------------ATGTATGCGTG--TGTGTGTGCGCG--CGTGCGCGCGTGCGTGCGTGTGTGTGTGTG------------AA----AATGTGTGCATGC-TACTTACTCAACTTGTT--ATGTGTTTATGTGTTTAATTATTTACATGTTATTACAACATTGTAATTTGATGAGAAACTATGTATAGTTTAAATCAATAAAATATTCTTCTTCTTCTTCTTCTTCTTCATATAACCCTA--TA-----ACATACTCCCTTT-TATTGATC
gi|1 : AAACAACTTT--TTCATGTAAAAGGGAATTATG-GGTAGCCTATA-TATACAA-A-CTAA--AATCTAA-----------------TCTATA-------CGAGTAC--TGAAA----TGTCGAT-AGTAAGCGCGAA------------------TACCCGTG---GTG-GTGCGCGAGCGTGCATGTATACGTGCGTGTGTGTATATC------------A-------TGTGTAAATA------TACTCAACTTGCTTCATATGTTT------TTAATTACTTACATGTTATTACAGTATTGTAATTTGATGAGAAACTATGTACAGTTTAAATCAATAAAATAGTAGTCTTTT
gi|10 : ggctgaaatttaagacgaatttcattttgtactactatgtcctatttaccatgaacttagatatattcacaagcgttgtatccgtagcacaactatgttaaagtttattaatcttcttaaatcaaaaaataaattgttaaattaagcaaatttatttctgaagcatttgtcgaacgacgttccatagtaaatagctgataaatgtgttccccttGATGAGAAACTGTA-ATAGTTTAAATCAATAAAA-AATCTTCGTCTTCTTCataattacga
gi|11 : atgaatttttgtatatatgtgattgagagctatatatatgttaaacatttgtaactgttaaaatttatacattgatttgtcacgtaaatgtactgtatatgttttataTTACTCAACTTGTT--ATGTGTTTATGTGTTTAATTATTTACGTGTTATTACAACATTGTAATTTGATGAGAAACTATGTTTAGTTTAAATCAATAAAATATTCTTCTTCATCTTCTTCTTCTTCATATAACCCTA--TA-----ACATACTCCCTTT-TATTGATC
gi|12 : TAT-GTGTG-----TG--CGTGTGCGAGCGCGTACGTTCGTGTGCGCATATGTATGTGTGATTGTGTGTACGTG--CGTGTGCGCGCATGTGCGTGTGTGTGT
gi|14 : GATGAGAAACTGTA-ATAGTTTAAATCAATAA----TTTTTCTTCTTCTTTTTCTTTTTCAcaacaatcatggtagttcacacccgttttactttatactccaaataaacatacaatttaattg
gi|15 : aactttagtaattgttaaaacttgtacattgatttgtcacgttaatgtattgtatatatgctttatacTA------------AA----AATGTTTGCATAT-TACTTACTCAACTTGTT--ATGTGTTTATGTGTTTAATTATTTACATGTTATAACAACAATGTAATTTGATGTAAAACTATGTATAGTTTAAATCAAAAAAATATTcg
gi|16 : TG--TGTGTGTGCGGG--CGTGCGTGTGTGCGT--GTGTTTGCGCGCG------------AATATGAATGT-TGTAT
gi|17 : TACAT------------GTGTGTGTGTG--TGTGTGTGCGTG--CGTGCGTGccatt
gi|18 : aatgcactagtataaaacaaaaGTGTGCGCGCG--CGCGCGCGCGCGCGTGTGTGTGTGTGTGTtaat
gi|18 : G--TGTGCGCGCGCGCGCGCGCGCGCGTGTGTG--------------------TGTGTGTGTACGTACGTATTacgtacgtatttga
gi|2 : AAAAACTTAATTT-ATGTAAAAGAAAATT-TG-AGTA---TAT--TATACAATATCTAATGGATATGAGTAT----T--GAAATGTCGATAGTAAAAACGAATAC-GTGTGG----TG--GGG-TGCGA----------------------------GCGTG--TGTGTGTGCGTG--CGTGCGTGCGTGCAT--GTGTGTGTGTGTG------------AA----AATGTGTGCATGC-TAtga
gi|3 : gctgaaattgaagacgaattttattttgtattaccatgtcctatttaccatgaacttatatgcaaatatatttataagcattatatccgtagaccaaatatgtataagtttataaatcttcttaaatcaaaaaataaatccgaaattgttgaattaggcaaatttatatccgaagcatttgtaaaacgacgttccataataaataattgatcaatgggttcatcctcatAAAAAA--TTATTTTATGTAAAAGAAAATT-TG-AGTA---TAT--TATACAATATGTAATTGATATAAGTAT----T--GAAATGTCGATAGTAAGAGTGAATAC-GTGTGG----TG--GGT-TGCGAGAGTGTATGT------------ATGTANNNNNN--NNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAA----AATGTGTGCATGC-TATTTACTCAACTTGTT--AT--------GTGTTTAATTATTTACATGTTATTACAACATTGTAATTTAATGAGAAACTATGTATAGTTTAAATCAATAAAATATTCTTCTTCTACT
gi|4 : gaagcatttgtaaaacgacgttccataataaataactgataaatgtgttcatcctcaAAAAAA---TATTTTATGTAAAAGAAAATT-TG-AGTA---TAT--TATACAATATCTAATAGATATGAGTAT----T--GAAATGTCGATAGTAAGAGCGAATAC-GTGTGG----TG--GGT-TACGAGAGTGTATGT------------ATGTATGCGTG--TGTGTGTGCGTG--CGTGCGTGCATGCGTGCGTGTGTGTGTATG------------AA----AATGTGTGTATGC-TATTTACTCAACTTG----------TTATGTGTTTAATTATTCACATGTTATTACAACATTGTAATTTGATGAGAAACTATGTATAGTTTAAATCAATAAAATATACTTCTTTTTCTTCTTATTATTAA-ATAA---TAATTA-----A-ATATTCATTTCACATTAATCaa
gi|5 : TGTAAAAGAAAATT-TG-ACTA---CATACCAAATAA-ATCTAATTTATATGAGTA-----------ATGTCGATAGTAAATGCGAA--------------------------------TACGT------------ATG-ATG-------------GTGCG--CGAGCGTGTATGTATGTGTGTGTGTATGTG------------AA----AATATGTGCGTGT-TAGATACTCAACTTGTT--ATGTGTTTA-------AA-TATTTACATTTTATTACAACATTGTAATTTGATGAGAAACTATGTATAGTTTAAATCAATAAAATATGCTTCTTCTTCTTCTTCTTCTTCAT---GCCGTA--TATCTCCACTTAATTCACTT-TACTGA
gi|7 : tccatcgtaaccatttctttaagtgttcattctcaaaagTGTAAAAAAAGAAT-AGCAGAA---TTT--CATATTATAACTAA--AAT-TGTGTATACTTTCAGAAGCGTT-ATA-T----GCG--TACTGTGTGGAGTATG--GAC-TGCGCGCGCGTGCGT------------GCGTGTGCGTG--TGCG----CGCG--CGTGTGTGTGTGTGTGTGCATGCGCCTGTG------------AA----Aact
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TGACACTGAAGACAAATATCATTTTGTTTTTATATGCCAAACATATAGAGAAAATAGAAGTAAATATATTAAACGATTTTATAAACAGAGACTTAACATGTGGATATTTTTTTTTTATCTCCTCTTCAATCAAGAAGCAATGAATTAATCATAAATTATAGTAAATTTCTTTCAGAAGCATTATGTAAAAGACGTTCCATAATAAACAACCAATAAGTGTTCATCCTCTTTTGATATTGATTTTTTTATATAATTAATATAAAACAAAATAAAATTACCGTTTACTTAATA
Unaligned ( gi|8 ): TAACGATATTGAAGATGAATTTCAATTTGTTTCAGTGTGTTCCAGGTGTAATGATATAAGAATTATATTGATAAGTATAATATGTTAGAAGGCCAAGTATGTTTAATTTTTATCATTATTACAATAGTTTGTAGAACAAAACTGAACTTAGCAAATATATATCGGAAGCTTTAGAAATTCGACGCTCTATTCCAATCTTTATTT
Unaligned ( gi|9 ): TCTTCTCCAATCAGCAAACAATAAAGAAATATTAAATCTAATACATTTCTTATAGAAGCATTGTGTAAAAGACGTTCCATTATCAATAACCAATAAACGTTCATTCTTCTTTGATATTGATCAATTATATCTAACATAGTACATAATGAAATTTCCTTCTTACTTAAAAA
Unaligned ( gi|13 ): ATTTATACATGAGTTTATATACGGAGATCAAATATGATAATCTTTTTATCTCTCCTTCAATCAATAAATAATTAAAATAATTCATAAGTGTTTGTAATTTCTTTATGCAATTTCATGTAAATGATGCTCTATGATAAAGAGATGATAAAGTTCAT
Alignments
lowQualScore : 11 111 11 111 333 1111 22222222222 2222222222222 222222222222222222 11 55555555555555555555 1 11
lowQualScore : 88 3 7 6 6 111 55 99 111 444 4 4444 2 9999 3 88 00000000000 55 1 3 6666666666666 0 1 666 4 55 1 0 22 777777777777777777 77 55 1 99 5 00 3 0 0 66666666666666666666 6 1 2 1 88
lowQualScore : .. . . . . ... .. .. ... ... . .... . .... . .. ........... .. . . ............. . . ... . .. . . .. .................. .. .. . .. . .. . . . .................... . . . . ..
lowQualScore : 00 2 0 7 7 777 88 22 777 333 2 2222 5 2222 2 77 77777777777 00 7 4 4444444444444 1 6 333 2 00 2 7 00 888888888888888888 44 22 7 22 2 33 2 1 2 00000000000000000000 7 0 0 0 33
consensus : AAAAAACTTTATTTTATGTAAAAGAAAATT-TG-AGTA---TAT--TATACAA--TA---TCTAAT-G-ATATGAGTATT----GAAATGTCGATAGTAAGAGCGAATAC-GTGTGG----TGGGT-TGCGAGCGCGTACGT------------ATGTATGCGTG--TGTGTGTGCGCG--CGTGCGCGCGCGCGTGCGTGTGTGTGTGTG------------AA----AATGTGTGCATGC-TACTTACTCAACTTGTT--ATGTGTTTATGTGTTTAATTATTTACATGTTATTACAACATTGTAATTTGATGAGAAACTATGTATAGTTTAAATCAATAAAATATTCTTCTTCTTCTTCTTCTTCTTCATATAA-CC-TA--TA-----ACATANTCCATTT--TATTGATC
Reference ( family-947 ) : AAAAAACTTTATTTTATGTAAAAGAAAATT-TG-AGTA---TAT--TATACAA--TA---TCTAAT-G-ATATGAGTATT----GAAATGTCGATAGTAAGAGCGAATAC-GTGTGG----TGGGT-TGCGAGCGCGTACGT------------ATGTATGCGTG--TGTGTGTGCGCG--CGTGCGCGCGCGCGTGCGTGTGTGTGTGTG------------AA----AATGTGTGCATGC-TACTTACTCAACTTGTT--ATGTGTTTATGTGTTTAATTATTTACATGTTATTACAACATTGTAATTTGATGAGAAACTATGTATAGTTTAAATCAATAAAATATTCTTCTTCTTCTTCTTCTTCTTCATATAA-CC-TA--TA-----ACATANTCCNTTT--TATTGATC
gi|1 : AAACAACTTT--TTCATGTAAAAGGGAATTATG-GGTAGCCTATA-TATACAAACTAAAATCTAAT-CTATACGAGTACT----GAAATGTCG-------------ATA-------------------GTAAGCGCGAA------------------TACCCGTG---GTG-GTGCGCGAGCGTGCATGTATACGTGCGTGTGTGTATATC------------A-------TGTGTAAATA------TACTCAACTTGCTTCATATGTTT------TTAATTACTTACATGTTATTACAGTATTGTAATTTGATGAGAAACTATGTACAGTTTAAATCAATAAAATAGTAGTCTTTT
gi|10 : ggctgaaatttaagacgaatttcattttgtactactatgtcctatttaccatgaacttagatatattcacaagcgttgtatccgtagcacaactatgttaaagtttattaatcttcttaaatcaaaaaataaattgttaaattaagcaaatttatttctgaagcatttgtcgaacgacgttccatagtaaatagctgataaatgtgttccccttGATGAGAAACTGTA-ATAGTTTAAATCAATAAAA-AATCTTCGTCTTCTTCataattacga
gi|11 : atgaatttttgtatatatgtgattgagagctatatatatgttaaacatttgtaactgttaaaatttatacattgatttgtcacgtaaatgtactgtatatgttttataTTACTCAACTTGTT--ATGTGTTTATGTGTTTAATTATTTACGTGTTATTACAACATTGTAATTTGATGAGAAACTATGTTTAGTTTAAATCAATAAAATATTCTTCTTCATCTTCTTCTTCTTCATATAACCC-TA--TA-----ACATACTCCCTTT--TATTGATC
gi|12 : TAT-GTGTG-----TGCGTGTGCGAGCGCGTACGTTCGTGTGCGCATATGTATGTGTGATTGTGTGTACGTG--CGTGTGCGCGCATGTGCGTGTGTGTGT
gi|14 : GATGAGAAACTGTA-ATAGTTTAAATCAATAA----TTTTTCTTCTTCTTTTTCTTTTTCAcaacaatcatggtagttcacacccgttttactttatactccaaataaacatacaatttaattg
gi|15 : aactttagtaattgttaaaacttgtacattgatttgtcacgttaatgtattgtatatatgctttatacTA------------AA----AATGTTTGCATAT-TACTTACTCAACTTGTT--ATGTGTTTATGTGTTTAATTATTTACATGTTATAACAACAATGTAATTTGATGTAAAACTATGTATAGTTTAAATCAAAAAAATATTcg
gi|16 : TG--TGTGTGTGCGGG--CGTGCGTGTGTGCGT--GTGTTTGCGCGCG------------AATATGAATGT-TGTAT
gi|17 : TACAT------------GTGTGTGTGTG--TGTGTGTGCGTG--CGTGCGTGccatt
gi|18 : aatgcactagtataaaacaaaaGTGTGCGCGCG--CGCGCGCGCGCGCGTGTGTGTGTGTGTGTtaat
gi|18 : G--TGTGCGCGCGCGCGCGCGCGCGCGTGTGTG--------------------TGTGTGTGTACGTACGTATTacgtacgtatttga
gi|2 : AAAAACTTAATTT-ATGTAAAAGAAAATT-TG-AGTA---TAT--TATACAA--TA---TCTAAT-GGATATGAGTATT----GAAATGTCGATAGTAAAAACGAATAC-GTGTGG----TGGGG-TGCGA----------------------------GCGTG--TGTGTGTGCGTG--CGTGCGTGCGTGCAT--GTGTGTGTGTGTG------------AA----AATGTGTGCATGC-TAtga
gi|3 : gctgaaattgaagacgaattttattttgtattaccatgtcctatttaccatgaacttatatgcaaatatatttataagcattatatccgtagaccaaatatgtataagtttataaatcttcttaaatcaaaaaataaatccgaaattgttgaattaggcaaatttatatccgaagcatttgtaaaacgacgttccataataaataattgatcaatgggttcatcctcatAAAAAA--TTATTTTATGTAAAAGAAAATT-TG-AGTA---TAT--TATACAA--TA---TGTAATTG-ATATAAGTATT----GAAATGTCGATAGTAAGAGTGAATAC-GTGTGG----TGGGT-TGCGAGAGTGTATGT------------ATGTANNNNNN--NNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAA----AATGTGTGCATGC-TATTTACTCAACTTGTT--AT--------GTGTTTAATTATTTACATGTTATTACAACATTGTAATTTAATGAGAAACTATGTATAGTTTAAATCAATAAAATATTCTTCTTCTACT
gi|4 : gaagcatttgtaaaacgacgttccataataaataactgataaatgtgttcatcctcaAAAAAA---TATTTTATGTAAAAGAAAATT-TG-AGTA---TAT--TATACAA--TA---TCTAATAG-ATATGAGTATT----GAAATGTCGATAGTAAGAGCGAATAC-GTGTGG----TGGGT-TACGAGAGTGTATGT------------ATGTATGCGTG--TGTGTGTGCGTG--CGTGCGTGCATGCGTGCGTGTGTGTGTATG------------AA----AATGTGTGTATGC-TATTTACTCAACTTG----------TTATGTGTTTAATTATTCACATGTTATTACAACATTGTAATTTGATGAGAAACTATGTATAGTTTAAATCAATAAAATATACTTCTTTTTCTTCTTATTATTAA-ATAA----TAATTA-----A-ATATT-CATTTCACATTAATCaa
gi|5 : TGTAAAAGAAAATT-TG-ACTA---CATACCAAATAA---A---TCTAAT-TTATATGAGTA---------ATGTCGATAGTAAATGCGAA------------------------------TACGT------------ATG-ATG-------------GTGCG--CGAGCGTGTATGTATGTGTGTGTGTATGTG------------AA----AATATGTGCGTGT-TAGATACTCAACTTGTT--ATGTGTTTA-------AA-TATTTACATTTTATTACAACATTGTAATTTGATGAGAAACTATGTATAGTTTAAATCAATAAAATATGCTTCTTCTTCTTCTTCTTCTTCAT---G-CCGTA--TATCTCCACTTAATTCACTT--TACTGA
gi|7 : tccatcgtaaccatttctttaagtgttcattctcaaaagTGTAAAAAAAGAAT-AGCAGAA---TTT--CATATTA--TA---ACTAAA-A-TTGTGTATACTTTCAGAAGCGTT-ATA-T----GCG--TACTGTGTGGAGTATGGAC-TGCGCGCGCGTGCGT------------GCGTGTGCGTG--TGCG----CGCG--CGTGTGTGTGTGTGTGTGCATGCGCCTGTG------------AA----Aact
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TGACACTGAAGACAAATATCATTTTGTTTTTATATGCCAAACATATAGAGAAAATAGAAGTAAATATATTAAACGATTTTATAAACAGAGACTTAACATGTGGATATTTTTTTTTTATCTCCTCTTCAATCAAGAAGCAATGAATTAATCATAAATTATAGTAAATTTCTTTCAGAAGCATTATGTAAAAGACGTTCCATAATAAACAACCAATAAGTGTTCATCCTCTTTTGATATTGATTTTTTTATATAATTAATATAAAACAAAATAAAATTACCGTTTACTTAATA
Unaligned ( gi|8 ): TAACGATATTGAAGATGAATTTCAATTTGTTTCAGTGTGTTCCAGGTGTAATGATATAAGAATTATATTGATAAGTATAATATGTTAGAAGGCCAAGTATGTTTAATTTTTATCATTATTACAATAGTTTGTAGAACAAAACTGAACTTAGCAAATATATATCGGAAGCTTTAGAAATTCGACGCTCTATTCCAATCTTTATTT
Unaligned ( gi|9 ): TCTTCTCCAATCAGCAAACAATAAAGAAATATTAAATCTAATACATTTCTTATAGAAGCATTGTGTAAAAGACGTTCCATTATCAATAACCAATAAACGTTCATTCTTCTTTGATATTGATCAATTATATCTAACATAGTACATAATGAAATTTCCTTCTTACTTAAAAA
Unaligned ( gi|13 ): ATTTATACATGAGTTTATATACGGAGATCAAATATGATAATCTTTTTATCTCTCCTTCAATCAATAAATAATTAAAATAATTCATAAGTGTTTGTAATTTCTTTATGCAATTTCATGTAAATGATGCTCTATGATAAAGAGATGATAAAGTTCAT
Alignments
lowQualScore : 11 111 11 111 333 1111 22222222222 2222222222222 222222222222222222 11 55555555555555555555 1 11
lowQualScore : 88 3 7 6 6 111 55 99 111 444 4 4444 2 9999 3 88 00000000000 55 1 3 6666666666666 0 1 666 4 55 1 0 22 777777777777777777 77 55 1 99 5 00 3 0 0 66666666666666666666 6 1 2 88
lowQualScore : .. . . . . ... .. .. ... ... . .... . .... . .. ........... .. . . ............. . . ... . .. . . .. .................. .. .. . .. . .. . . . .................... . . . ..
lowQualScore : 00 2 0 7 7 777 88 22 777 333 2 2222 5 2222 2 77 77777777777 00 7 4 4444444444444 1 6 333 2 00 2 7 00 888888888888888888 44 22 7 22 2 33 2 1 2 00000000000000000000 7 0 0 33
consensus : AAAAAACTTTATTTTATGTAAAAGAAAATT-TG-AGTA---TAT--TATACAA--TA---TCTAAT-G-ATATGAGTATT----GAAATGTCGATAGTAAGAGCGAATAC-GTGTGG----TGGGT-TGCGAGCGCGTACGT------------ATGTATGCGTG--TGTGTGTGCGCG--CGTGCGCGCGCGCGTGCGTGTGTGTGTGTG------------AA----AATGTGTGCATGC-TACTTACTCAACTTGTT--ATGTGTTTATGTGTTTAATTATTTACATGTTATTACAACATTGTAATTTGATGAGAAACTATGTATAGTTTAAATCAATAAAATATTCTTCTTCTTCTTCTTCTTCTTCATATAA-CC-TA--TA-----ACATANTCCATTT--TATTGATC
Reference ( family-947 ) : AAAAAACTTTATTTTATGTAAAAGAAAATT-TG-AGTA---TAT--TATACAA--TA---TCTAAT-G-ATATGAGTATT----GAAATGTCGATAGTAAGAGCGAATAC-GTGTGG----TGGGT-TGCGAGCGCGTACGT------------ATGTATGCGTG--TGTGTGTGCGCG--CGTGCGCGCGCGCGTGCGTGTGTGTGTGTG------------AA----AATGTGTGCATGC-TACTTACTCAACTTGTT--ATGTGTTTATGTGTTTAATTATTTACATGTTATTACAACATTGTAATTTGATGAGAAACTATGTATAGTTTAAATCAATAAAATATTCTTCTTCTTCTTCTTCTTCTTCATATAA-CC-TA--TA-----ACATANTCCATTT--TATTGATC
gi|1 : AAACAACTTT--TTCATGTAAAAGGGAATTATG-GGTAGCCTATA-TATACAAACTAAAATCTAAT-CTATACGAGTACT----GAAATGTCG-------------ATA-------------------GTAAGCGCGAA------------------TACCCGTG---GTG-GTGCGCGAGCGTGCATGTATACGTGCGTGTGTGTATATC------------A-------TGTGTAAATA------TACTCAACTTGCTTCATATGTTT------TTAATTACTTACATGTTATTACAGTATTGTAATTTGATGAGAAACTATGTACAGTTTAAATCAATAAAATAGTAGTCTTTT
gi|10 : ggctgaaatttaagacgaatttcattttgtactactatgtcctatttaccatgaacttagatatattcacaagcgttgtatccgtagcacaactatgttaaagtttattaatcttcttaaatcaaaaaataaattgttaaattaagcaaatttatttctgaagcatttgtcgaacgacgttccatagtaaatagctgataaatgtgttccccttGATGAGAAACTGTA-ATAGTTTAAATCAATAAAA-AATCTTCGTCTTCTTCataattacga
gi|11 : atgaatttttgtatatatgtgattgagagctatatatatgttaaacatttgtaactgttaaaatttatacattgatttgtcacgtaaatgtactgtatatgttttataTTACTCAACTTGTT--ATGTGTTTATGTGTTTAATTATTTACGTGTTATTACAACATTGTAATTTGATGAGAAACTATGTTTAGTTTAAATCAATAAAATATTCTTCTTCATCTTCTTCTTCTTCATATAACCC-TA--TA-----ACATACTCCCTTT--TATTGATC
gi|12 : TAT-GTGTG-----TGCGTGTGCGAGCGCGTACGTTCGTGTGCGCATATGTATGTGTGATTGTGTGTACGTG--CGTGTGCGCGCATGTGCGTGTGTGTGT
gi|14 : GATGAGAAACTGTA-ATAGTTTAAATCAATAA----TTTTTCTTCTTCTTTTTCTTTTTCAcaacaatcatggtagttcacacccgttttactttatactccaaataaacatacaatttaattg
gi|15 : aactttagtaattgttaaaacttgtacattgatttgtcacgttaatgtattgtatatatgctttatacTA------------AA----AATGTTTGCATAT-TACTTACTCAACTTGTT--ATGTGTTTATGTGTTTAATTATTTACATGTTATAACAACAATGTAATTTGATGTAAAACTATGTATAGTTTAAATCAAAAAAATATTcg
gi|16 : TG--TGTGTGTGCGGG--CGTGCGTGTGTGCGT--GTGTTTGCGCGCG------------AATATGAATGT-TGTAT
gi|17 : TACAT------------GTGTGTGTGTG--TGTGTGTGCGTG--CGTGCGTGccatt
gi|18 : aatgcactagtataaaacaaaaGTGTGCGCGCG--CGCGCGCGCGCGCGTGTGTGTGTGTGTGTtaat
gi|18 : G--TGTGCGCGCGCGCGCGCGCGCGCGTGTGTG--------------------TGTGTGTGTACGTACGTATTacgtacgtatttga
gi|2 : AAAAACTTAATTT-ATGTAAAAGAAAATT-TG-AGTA---TAT--TATACAA--TA---TCTAAT-GGATATGAGTATT----GAAATGTCGATAGTAAAAACGAATAC-GTGTGG----TGGGG-TGCGA----------------------------GCGTG--TGTGTGTGCGTG--CGTGCGTGCGTGCAT--GTGTGTGTGTGTG------------AA----AATGTGTGCATGC-TAtga
gi|3 : gctgaaattgaagacgaattttattttgtattaccatgtcctatttaccatgaacttatatgcaaatatatttataagcattatatccgtagaccaaatatgtataagtttataaatcttcttaaatcaaaaaataaatccgaaattgttgaattaggcaaatttatatccgaagcatttgtaaaacgacgttccataataaataattgatcaatgggttcatcctcatAAAAAA--TTATTTTATGTAAAAGAAAATT-TG-AGTA---TAT--TATACAA--TA---TGTAATTG-ATATAAGTATT----GAAATGTCGATAGTAAGAGTGAATAC-GTGTGG----TGGGT-TGCGAGAGTGTATGT------------ATGTANNNNNN--NNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAA----AATGTGTGCATGC-TATTTACTCAACTTGTT--AT--------GTGTTTAATTATTTACATGTTATTACAACATTGTAATTTAATGAGAAACTATGTATAGTTTAAATCAATAAAATATTCTTCTTCTACT
gi|4 : gaagcatttgtaaaacgacgttccataataaataactgataaatgtgttcatcctcaAAAAAA---TATTTTATGTAAAAGAAAATT-TG-AGTA---TAT--TATACAA--TA---TCTAATAG-ATATGAGTATT----GAAATGTCGATAGTAAGAGCGAATAC-GTGTGG----TGGGT-TACGAGAGTGTATGT------------ATGTATGCGTG--TGTGTGTGCGTG--CGTGCGTGCATGCGTGCGTGTGTGTGTATG------------AA----AATGTGTGTATGC-TATTTACTCAACTTG----------TTATGTGTTTAATTATTCACATGTTATTACAACATTGTAATTTGATGAGAAACTATGTATAGTTTAAATCAATAAAATATACTTCTTTTTCTTCTTATTATTAA-ATAA----TAATTA-----A-ATATT-CATTTCACATTAATCaa
gi|5 : TGTAAAAGAAAATT-TG-ACTA---CATACCAAATAA---A---TCTAAT-TTATATGAGTA---------ATGTCGATAGTAAATGCGAA------------------------------TACGT------------ATG-ATG-------------GTGCG--CGAGCGTGTATGTATGTGTGTGTGTATGTG------------AA----AATATGTGCGTGT-TAGATACTCAACTTGTT--ATGTGTTTA-------AA-TATTTACATTTTATTACAACATTGTAATTTGATGAGAAACTATGTATAGTTTAAATCAATAAAATATGCTTCTTCTTCTTCTTCTTCTTCAT---G-CCGTA--TATCTCCACTTAATTCACTT--TACTGA
gi|7 : tccatcgtaaccatttctttaagtgttcattctcaaaagTGTAAAAAAAGAAT-AGCAGAA---TTT--CATATTA--TA---ACTAAA-A-TTGTGTATACTTTCAGAAGCGTT-ATA-T----GCG--TACTGTGTGGAGTATGGAC-TGCGCGCGCGTGCGT------------GCGTGTGCGTG--TGCG----CGCG--CGTGTGTGTGTGTGTGTGCATGCGCCTGTG------------AA----Aact
blockSeqs : CT A T . C . AC . . GG T TTCA G AAAA A CT GAGTATGGAC GC C C TCGTGTGCGCATA T ATT T . C GC NNNNNNNNNNNNAA CG CT T . G AT T TGCCGTATATCTCC C T T CA
blockSeqs : . A T . . . . . . TG T . G AAGA A T TGCGTG GA T C G T T T . T GT AATATG T CG T . G AT T ATAATAATTA . A . .
blockSeqs : . A . . . . . . . AG T . G AAGA A C GTGGGG GA T T A C T T . T GC AA C TT T . G AT T
blockSeqs : . . . . . . TT C . G AAAT A C GTGGGT GC C T A N T T . C NN AA C TT T . . A T
blockSeqs : . . . . . . A . . . . . C GTGGGT . . C A C N T . C GC AA C GA . . . . T
blockSeqs : . . . . C G C T N . T GT AA T .
blockSeqs : . . . T T . N GT AA .
blockSeqs : . . . T . .
blockSeqs : . . T .
blockSeqs : . T
blockSeqCons : *** ** ** *** AAGA C* GTGGGN***** A************ T** ** AA**************** C* CT ** AT
originalCons : AAAAAACTTTATTTTATGTAAAAGAAAATT-TG-AGTA---TAT--TATACAA--TA---TCTAAT-G-ATATGAGTATT----GAAATGTCGATAGTAAGAGCGAATAC-GTGTGG----TGGGT-TGCGAGCGCGTACGT------------ATGTATGCGTG--TGTGTGTGCGCG--CGTGCGCGCGCGCGTGCGTGTGTGTGTGTG------------AA----AATGTGTGCATGC-TACTTACTCAACTTGTT--ATGTGTTTATGTGTTTAATTATTTACATGTTATTACAACATTGTAATTTGATGAGAAACTATGTATAGTTTAAATCAATAAAATATTCTTCTTCTTCTTCTTCTTCTTCATATAA-CC-TA--TA-----ACATANTCCATTT--TATTGATC
finalCons : AAAAAACTTTATTTTATGTAAAAGAAAATT-TG-AGTA---TAT--TATACAA--TA---TCTAAT-G-ATATGAGTATT----GAAATGTCGATAGTAAGAGCGAATAC-GTGTGGTGGGN-----TGCGAGCGCGTACGTA------------TGTATGCGTGT--GTGTGTGCGCG--CGTGCGCGCGCGCGTGCGTGTGTGTGTGTGAA----------------AATGTGTGCATGC-TACTTACTCAACTTGTT--ATGTGTTTATGTGTTTAATTATTTACATGTTATTACAACATTGTAATTTGATGAGAAACTATGTATAGTTTAAATCAATAAAATATTCTTCTTCTTCTTCTTCTTCTTCATATAA-CC-TA--TA-----ACATANTCCATTT--TATTGATC
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TGACACTGAAGACAAATATCATTTTGTTTTTATATGCCAAACATATAGAGAAAATAGAAGTAAATATATTAAACGATTTTATAAACAGAGACTTAACATGTGGATATTTTTTTTTTATCTCCTCTTCAATCAAGAAGCAATGAATTAATCATAAATTATAGTAAATTTCTTTCAGAAGCATTATGTAAAAGACGTTCCATAATAAACAACCAATAAGTGTTCATCCTCTTTTGATATTGATTTTTTTATATAATTAATATAAAACAAAATAAAATTACCGTTTACTTAATA
Unaligned ( gi|8 ): TAACGATATTGAAGATGAATTTCAATTTGTTTCAGTGTGTTCCAGGTGTAATGATATAAGAATTATATTGATAAGTATAATATGTTAGAAGGCCAAGTATGTTTAATTTTTATCATTATTACAATAGTTTGTAGAACAAAACTGAACTTAGCAAATATATATCGGAAGCTTTAGAAATTCGACGCTCTATTCCAATCTTTATTT
Unaligned ( gi|9 ): TCTTCTCCAATCAGCAAACAATAAAGAAATATTAAATCTAATACATTTCTTATAGAAGCATTGTGTAAAAGACGTTCCATTATCAATAACCAATAAACGTTCATTCTTCTTTGATATTGATCAATTATATCTAACATAGTACATAATGAAATTTCCTTCTTACTTAAAAA
Unaligned ( gi|13 ): ATTTATACATGAGTTTATATACGGAGATCAAATATGATAATCTTTTTATCTCTCCTTCAATCAATAAATAATTAAAATAATTCATAAGTGTTTGTAATTTCTTTATGCAATTTCATGTAAATGATGCTCTATGATAAAGAGATGATAAAGTTCAT
Alignments
lowQualScore : 11 111 11 111 333 1111 222222222222222222222222222222222222222 222222222222222222 11 55555555555555555555 1 11
lowQualScore : 88 3 7 6 6 111 55 99 111 444 4 4444 2 9999 3 88 666666666666666666666666666666666666666 0 1 666 4 55 1 0 22 777777777777777777 77 55 1 99 5 00 3 0 0 66666666666666666666 6 1 2 88
lowQualScore : .. . . . . ... .. .. ... ... . .... . .... . .. ....................................... . . ... . .. . . .. .................. .. .. . .. . .. . . . .................... . . . ..
lowQualScore : 00 2 0 7 7 777 88 22 777 333 2 2222 5 2222 2 77 777777777777777777777777777777777777777 1 6 333 2 00 2 7 00 888888888888888888 44 22 7 22 2 33 2 1 2 00000000000000000000 7 0 0 33
consensus : AAAAAACTTTATTTTATGTAAAAGAAAATT-TG-AGTA---TAT--TATACAA--TA---TCTAAT-G-ATATGAGTATT----GAAATGTCGATAGTAAGAGCGAATAC-GTGTG-G----TGGG-TGCGAGCGCGTACGT------------ATGTATGCGTG--TGTGTGTGCGCG--CGTGCGCGCGCGCGTGCGTGTGTGTGTGTG------------AA----AATGTGTGCATGC-TACTTACTCAACTTGTT--ATGTGTTTATGTGTTTAATTATTTACATGTTATTACAACATTGTAATTTGATGAGAAACTATGTATAGTTTAAATCAATAAAATATTCTTCTTCTTCTTCTTCTTCTTCATATAA-CC-TA--TA-----ACATANTCCATTT--TATTGATC
Reference ( family-947 ) : AAAAAACTTTATTTTATGTAAAAGAAAATT-TG-AGTA---TAT--TATACAA--TA---TCTAAT-G-ATATGAGTATT----GAAATGTCGATAGTAAGAGCGAATAC-GTGTG-G----TGGGNTGCGAGCGCGTACGT------------ATGTATGCGTG--TGTGTGTGCGCG--CGTGCGCGCGCGCGTGCGTGTGTGTGTGTG------------AA----AATGTGTGCATGC-TACTTACTCAACTTGTT--ATGTGTTTATGTGTTTAATTATTTACATGTTATTACAACATTGTAATTTGATGAGAAACTATGTATAGTTTAAATCAATAAAATATTCTTCTTCTTCTTCTTCTTCTTCATATAA-CC-TA--TA-----ACATANTCCATTT--TATTGATC
gi|1 : AAACAACTTT--TTCATGTAAAAGGGAATTATG-GGTAGCCTATA-TATACAAACTAAAATCTAAT-CTATACGAGTACT----GAAATGTCG-------------ATA-------------------GTAAGCGCGAA------------------TACCCGTG---GTG-GTGCGCGAGCGTGCATGTATACGTGCGTGTGTGTATATC------------A-------TGTGTAAATA------TACTCAACTTGCTTCATATGTTT------TTAATTACTTACATGTTATTACAGTATTGTAATTTGATGAGAAACTATGTACAGTTTAAATCAATAAAATAGTAGTCTTTT
gi|10 : ggctgaaatttaagacgaatttcattttgtactactatgtcctatttaccatgaacttagatatattcacaagcgttgtatccgtagcacaactatgttaaagtttattaatcttcttaaatcaaaaaataaattgttaaattaagcaaatttatttctgaagcatttgtcgaacgacgttccatagtaaatagctgataaatgtgttccccttGATGAGAAACTGTA-ATAGTTTAAATCAATAAAA-AATCTTCGTCTTCTTCataattacga
gi|11 : atgaatttttgtatatatgtgattgagagctatatatatgttaaacatttgtaactgttaaaatttatacattgatttgtcacgtaaatgtactgtatatgttttataTTACTCAACTTGTT--ATGTGTTTATGTGTTTAATTATTTACGTGTTATTACAACATTGTAATTTGATGAGAAACTATGTTTAGTTTAAATCAATAAAATATTCTTCTTCATCTTCTTCTTCTTCATATAACCC-TA--TA-----ACATACTCCCTTT--TATTGATC
gi|12 : ATGT-GTGTGCG----TG---TGCGAGCGCGTACGTTCGTGTGCGCATATGTATGTGTGATTGTGTGTACGTG--CGTGTGCGCGCATGTGCGTGTGTGTGT
gi|14 : tGATGAGAAACTGTA-ATAGTTTAAATCAATAA----TTTTTCTTCTTCTTTTTCTTTTTCAcaacaatcatggtagttcacacccgttttactttatactccaaataaacatacaatttaattg
gi|15 : aactttagtaattgttaaaacttgtacattgatttgtcacgttaatgtattgtatatatgctttatacTA------------AA----AATGTTTGCATAT-TACTTACTCAACTTGTT--ATGTGTTTATGTGTTTAATTATTTACATGTTATAACAACAATGTAATTTGATGTAAAACTATGTATAGTTTAAATCAAAAAAATATTcg
gi|16 : TG--TGTGTGTGCGGG--CGTGCGTGTGTGCGT--GTGTTTGCGCGCG------------AATATGAATGT-TGTAT
gi|17 : TACAT------------GTGTGTGTGTG--TGTGTGTGCGTG--CGTGCGTGccatt
gi|18 : aatgcactagtataaaacaaaaGTGTGCGCGCG--CGCGCGCGCGCGCGTGTGTGTGTGTGTGTtaat
gi|18 : G--TGTGCGCGCGCGCGCGCGCGCGCGTGTGTG--------------------TGTGTGTGTACGTACGTATTacgtacgtatttga
gi|2 : AAAAACTTAATTT-ATGTAAAAGAAAATT-TG-AGTA---TAT--TATACAA--TA---TCTAAT-GGATATGAGTATT----GAAATGTCGATAGTAAAAACGAATAC-GTGTG-G----TGGGGTGCGA----------------------------GCGTG--TGTGTGTGCGTG--CGTGCGTGCGTGCAT--GTGTGTGTGTGTG------------AA----AATGTGTGCATGC-TAtga
gi|3 : gctgaaattgaagacgaattttattttgtattaccatgtcctatttaccatgaacttatatgcaaatatatttataagcattatatccgtagaccaaatatgtataagtttataaatcttcttaaatcaaaaaataaatccgaaattgttgaattaggcaaatttatatccgaagcatttgtaaaacgacgttccataataaataattgatcaatgggttcatcctcatAAAAAA--TTATTTTATGTAAAAGAAAATT-TG-AGTA---TAT--TATACAA--TA---TGTAATTG-ATATAAGTATT----GAAATGTCGATAGTAAGAGTGAATAC-GTGTG-G----TGGGTTGCGAGAGTGTATGT------------ATGTANNNNNN--NNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAA----AATGTGTGCATGC-TATTTACTCAACTTGTT--AT--------GTGTTTAATTATTTACATGTTATTACAACATTGTAATTTAATGAGAAACTATGTATAGTTTAAATCAATAAAATATTCTTCTTCTACT
gi|4 : gaagcatttgtaaaacgacgttccataataaataactgataaatgtgttcatcctcaAAAAAA---TATTTTATGTAAAAGAAAATT-TG-AGTA---TAT--TATACAA--TA---TCTAATAG-ATATGAGTATT----GAAATGTCGATAGTAAGAGCGAATAC-GTGTG-G----TGGGTTACGAGAGTGTATGT------------ATGTATGCGTG--TGTGTGTGCGTG--CGTGCGTGCATGCGTGCGTGTGTGTGTATG------------AA----AATGTGTGTATGC-TATTTACTCAACTTG----------TTATGTGTTTAATTATTCACATGTTATTACAACATTGTAATTTGATGAGAAACTATGTATAGTTTAAATCAATAAAATATACTTCTTTTTCTTCTTATTATTAA-ATAA----TAATTA-----A-ATATT-CATTTCACATTAATCaa
gi|5 : TGTAAAAGAAAATT-TG-ACTA---CATACCAAATAA---A---TCTAAT-TTATATGAGTA---------ATGTCGATAGTAAATGCGAA------------------------------TACGT------------ATG-ATG-------------GTGCG--CGAGCGTGTATGTATGTGTGTGTGTATGTG------------AA----AATATGTGCGTGT-TAGATACTCAACTTGTT--ATGTGTTTA-------AA-TATTTACATTTTATTACAACATTGTAATTTGATGAGAAACTATGTATAGTTTAAATCAATAAAATATGCTTCTTCTTCTTCTTCTTCTTCAT---G-CCGTA--TATCTCCACTTAATTCACTT--TACTGA
gi|7 : tccatcgtaaccatttctttaagtgttcattctcaaaagTGTAAAAAAAGAAT-AGCAGAA---TTT--CATATTA--TA---ACTAAA-A-TTGTGTATACTTTCAGAAGCGTT-ATA-T----GCG--TACTGTGTG-GAGTATGGACTGCGCGCGCGTGCGT------------GCGTGTGCGTG--TGCG----CGCG--CGTGTGTGTGTGTGTGTGCATGCGCCTGTG------------AA----Aact
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TGACACTGAAGACAAATATCATTTTGTTTTTATATGCCAAACATATAGAGAAAATAGAAGTAAATATATTAAACGATTTTATAAACAGAGACTTAACATGTGGATATTTTTTTTTTATCTCCTCTTCAATCAAGAAGCAATGAATTAATCATAAATTATAGTAAATTTCTTTCAGAAGCATTATGTAAAAGACGTTCCATAATAAACAACCAATAAGTGTTCATCCTCTTTTGATATTGATTTTTTTATATAATTAATATAAAACAAAATAAAATTACCGTTTACTTAATA
Unaligned ( gi|8 ): TAACGATATTGAAGATGAATTTCAATTTGTTTCAGTGTGTTCCAGGTGTAATGATATAAGAATTATATTGATAAGTATAATATGTTAGAAGGCCAAGTATGTTTAATTTTTATCATTATTACAATAGTTTGTAGAACAAAACTGAACTTAGCAAATATATATCGGAAGCTTTAGAAATTCGACGCTCTATTCCAATCTTTATTT
Unaligned ( gi|9 ): TCTTCTCCAATCAGCAAACAATAAAGAAATATTAAATCTAATACATTTCTTATAGAAGCATTGTGTAAAAGACGTTCCATTATCAATAACCAATAAACGTTCATTCTTCTTTGATATTGATCAATTATATCTAACATAGTACATAATGAAATTTCCTTCTTACTTAAAAA
Unaligned ( gi|13 ): ATTTATACATGAGTTTATATACGGAGATCAAATATGATAATCTTTTTATCTCTCCTTCAATCAATAAATAATTAAAATAATTCATAAGTGTTTGTAATTTCTTTATGCAATTTCATGTAAATGATGCTCTATGATAAAGAGATGATAAAGTTCAT