lowQualScore : 11111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222 22222222 22222222222222222222 1 22222222222 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 111 1111 333333333333333 1 111 111 777777777777777777777 11 2 111 333333 666666666666666666 1
lowQualScore : 888 3 2 333 66666666 99 1 77777777777777777777 1 99 2 1 5 66 77 77777777777 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 000 0000 99 9 6 1 444444444444444 0 6 2 000 000 111111111111111111111 5 1 99 5 0 22 0 777 111 6 6 111111 66 777777777777777777 8 2 7 7
lowQualScore : ... . . ... ........ .. . .................... . .. . . . .. .. ........... ............................................................................................................... ... .... .. . . . ............... . . . ... ... ..................... . . .. . . .. . ... ... . . ...... .. .................. . . . .
lowQualScore : 888 5 5 777 55555555 22 0 55555555555555555555 0 22 5 4 7 00 99 44444444444 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 000 6666 22 3 7 7 555555555555555 2 2 5 000 000 111111111111111111111 7 6 99 0 5 00 0 222 333 7 0 000000 22 888888888888888888 2 2 0 0
consensus : TCTTCGAGATTCATTTAAGTACATACACGAAA-------TACATT--CCCGAAACT--A---------------ATGT--GTTGTATATCCCGAAGCCAAACTGTGAATTA-TTCGGA--AAATCTT--CG-TCATATT---C--G----CAAGG---C-TGTNATTTGGAATTCCATCCCTGA-TTT-A-TTAAANAATCAGT------CAGTNTTTTACAG-T--AAANTAAATAT--------CTTCAA---TGGAGCAGATCA----TAGCATAC-CAGTCATA-TATAT----A-C-AT-----AATACTAATCTATATNGTCTTT---GA---AAA------T-----TAGTATA--TGAT-GTTCATTTGTTATATAAT-TAATGTTNNACACATGTTC-T-TGTTTAA-A-TTTG-TTGTTGAGGA-CCTCGGNGAAGATTGGACTTA-TCCAA-CT---GAGTTTTCTCGTNAAATAAAGTCATTAT
Reference ( gi|1 ) : TCTTCTGTATTTATTTAAGTACATACACGAAG-------TACATT--TCCGAAA--------------------ATGT--GTTGTATATCCCAAAGCCAAACTGTGAATGA-TTCAGA--AACTCTT--CA-TCATATTGTTCATGT-TCCAAAG---T-TGTAATTTGGAATTTTATCCCTGA-TTT-A-TGAAAAAATCAGT------CAGTCTTTTA-------AAAGTAAATCG--------CTGTAA---TGGAGCAGATCA----TAGCATAC-CAGTCATA-TATAT----A-C-AA-----AATACTGATCTATATAGTCTTT---GA---AAA------T-----TAGT-----TGAT-GTTCATTTGTTATATAGT-TAATGTTGAACAC-TGTTC-T-TGTTTAA-A-TTTG-TCGTTGAGTG-TCACAGGAAAGATTGGACTAGGCCCAA-AT---GAATTTTCTCGTAAAATAAAGTAATAAT
gi|5 : TCTTTGGGATTCATTTAAGTTCATAGATGAAA-------TACATT--TCCGAAACTTAATGCCAACTTCAGAAAATGT--GTTGTATATCCCAAAGCCAAACTGAGAATTA-TTCAGA--AAATCTT--TG-TCATATT-------------AAG------GGGATGT---ATTTTATT---------------AAAAATCAGT------CAATATTTTA-------CAGTTCAAT----------CTTCAA---TGAAACAGATCA----TAGCATAC-CGGTCAAA-TATGT----A-C-AT-----AATACTAATCTAT
gi|6 : tcaccaccttaTCTTCGAGATTCATTTAAGTACATGCATGAAA-------TACATT--CCCGAAACTAAAGATTCACTTCATAAAATGT--GTTGTATATTCCGACGCCAAACAATGAATTA-TTTTTA--AAATGTTTGCAGTCATATT---CAGG------AGA---T-TTTTTTTTGGAAATCCATCCCTGA-TTTTA-TTAAACAATCATT------CAGTCTTTTACAGTTA-AAAGTAAATAT--------ATTCAA---TGGAACAGATCA----TAG
gi|8 : ttcaccaccttaTCTTCGAGATTCATTTAAGTACATACATGATT-------TACATT--CCCGAAACTTCAG--------------ATTT--TTTTTACATCCCAAAGCCAAACTGTGAATTA-TTTGAT--AAATCTT--TG-TCATATT-----------CAGAA---TCTGTAATTTTGAATTTCATCCCTGA-TTT-
gi|3 : atttcaccaccttaTCTTCGAGATTCATTTAAGTAAATTCCCGGAACTCAGGATCCACT--TC-AAAA--------------------ATTTTTGTCGTGTACCCCATAGCCAAACTGCGAATTA-TCGGGA--AAATCTT--TG-TCATATT------------AAGGAA-C-TGTAATCTAGAATTCCATCCGTGA-CTT-AATTAAATAAACACT------CAGTATTTTACAGCTTAAAACTAAATAT--------CTTCAA---TGTAGAAGATCA----CAGTATAC-CAGTTAAAGTATAT----A-C-AT-----TATACTATTCTAta
gi|10 : aatttcaccgacttaTCTTCGAGATTCATTTAAGTACAAACACAAGA-------TCCAGT--TCTGAAA--------------------ATGT--GTT-TATATCCCAAAGCCAAACTGTGGATTA-CTTGGA--AAATC
gi|7 : tcaccttaTATTTATCTGAGGG-ATA-----AG-------TA--TTAACCCTAAA--------------------ATAT--TCTGTATATCCCGAAGCCAAATTGTGAATGA-TTCGGA--AA------------ATATTTGTCATAT-TCCA-------------------------TCCCTTATTTT-A-TTAAACAATCAGTCAG---CAGTCGTTTA-------CAGTTTAAACGTATTTTTTTTCCAG---TAGAGCAGAT-A----TAGCATAacaggggtatcgttttttggacat
gi|2 : AATTGTGATTTAGTTTAGATAAAATATT--CA---ATGT-GTTC-TGTATGCAAGGAAAC-CGCCATTCGGAATCACATTCAGGA--------GATAAAATTTGTATTTAACAGT---TTA-------AAAGTAAATAT--------CTTTAAGAACGGAGCAGATCC----TAGCATAG-CAGTCATA-TGTAT----A-A-AT-----AATAATAATCTATATAATCTTT---GA---CAA------TCTGTGTATT-----TGAT-GGTCATTTGTTATATAAT-TACTGTTTCACAC-TGTTT-T-CGTTT-A-A-TTTG-TTGTT-AATGACCTCGGTGGAGATTGGACTTAGCCCAA-CT---GAGTTT--CCGTAAATTAA
gi|4 : AG---TGAACCAGGTCA----CAACATGC-GAATCATA-TATATTTTAA-CTAATCTATAATATTGGT--ATATCGTTTTTTTAAACATAAA------TATA--TATT-----TGAT-GATCATTTGTAATAT-GTATATTGTTGAATACATATTC-TCTATTCAATA-TTTG-TTGTGGAGGA-CCTCGAGAAATATTGGATTTACTCCAATATTCAGAGCTATCTCGTGAAATGAAGTAATTATgtcattatata
gi|14 : ttgtattttacagattaaactaaaatatatatatacA---TGGAGCAGATCACATGTAGAATGC---GT-ATC-TAT-T----A-C-A-----------T--TTTATATTGTCTTT---CA---AA-------------TAATG----TGAT-GGTCATACGTT--------TAATGTTAAACACACGTTC-T-TGTTTAA-tattat
gi|11 : CA----TTGTACACACAGT-ATA-TATAT----AAC-AT-----AATATTGAACTATATGGTCTTT---GA---AAAA-----T-----CAGTATATCTGAT-GTTCATTTGTTACACAAT-TAATGCTTTACAC-TGTTC-T-TGTTTAA-
gi|9 : agacgc-----AAGACTAATCTATATGGTCTTT---GA---AAA------T-----TAGTATATTTGAT-GTTCATTTGTTATATAAT-TAATGTTTGTCAC-TGTTC-A-TTTTTAA-T-TTTG-TTGTTGGGGA-CCTCAGTGAAGATTG---TA----CAA-CT---GATTTTTCTCATAGAATAAAGTCAT
gi|16 : CTAATCTATAT---CTTT---GA---AAA------T-----TAGTATAATTGAT-GTTCATTTGTTta
gi|13 : TTC---GA---AAAAAAATGT-----TCGA-----TGATTGTTCATTTGTTATATAAT-GGATGTTTAACGC-TGTTC-T-TGTTTAA-T-TTTG-TTATT
gi|12 : TGTAATATGTT-TATTGTTAAACACATGCCCAG-TGCTCAA-A-CTTGATTGTTGAGGG-CCTCAGAGAAGATTTGGCTTAATCCAA-CT---GAGCTTTCTCTTTAGATAAAGTtaagtttttttctcgtaaaataaagt
gi|15 : T-TAATGTACTACACATGTTC-T-TGCTTAA-AATTTG-TTGTTGAGGA-TTTAAGGGAAGATTG------------------GAGTTTTCTCGTTGAATAAAGTCATTAT
gi|13 : TTTTCTCGTAAAATAAAGTtttaatg
Alignments
lowQualScore : 2222222 99999999999999999999999999999999999999 1111 88888888888888888888888888888 1 111 3333333 22222 11111 1111111111111 1111 33333333333 1 111 333333333 1111
lowQualScore : 1111111 0 99999999999999999999999999999999999999 0 1 5 1 66 1111 0 55555555555555555555555555555 1 4 0 0 1 5 7 3 1 111 1 7777777 3 22222 1 44444 888 9999 66 6 5 0 8888888888888 0 0000 5 1 0 0 33333333333 5 0 2 22 8 555 555 5 0 1 999999999 4444 7
lowQualScore : ....... . ...................................... . . . . .. .... . ............................. . . . . . . . . . ... . ....... . ..... . ..... ... .... .. . . . ............. . .... . . . . ........... . . . .. . ... ... . . . ......... .... .
lowQualScore : 7777777 7 88888888888888888888888888888888888888 7 4 0 1 99 4444 1 77777777777777777777777777777 7 3 7 7 4 7 5 5 0 777 0 3333333 0 11111 4 33333 888 4444 44 6 7 1 9999999999999 4 3333 0 2 2 9 88888888888 0 2 4 00 2 444 666 7 7 0 555555555 2222 5
consensus : TCTTCGAGATTCATTTAAGTACATACACGAAA-------TACATTTCCGAAACT-----------------AA-----------------TGTGTTGTATATCCCGAAGCCAAACTGTGAATTA-TTCGGA--AAATCTTC---GTCATATT-----C-----G----AAGG---CTGTAATTTGGAATTCCATCCCTGA-TTT-ATTAAACAATCAGT---CAGTATTTTACAG--TT--AAANTAAA-----TATCTT-----CAA---TGGAGCAGATCA----TAGCATAC-CAGTCATA-TATAT----A-C------ATAATACTAATCTATATNG--TCTTTGAAAA-TTAGTAT---A----T--GAT-GTTCATTTGTTATATAATTAATGTTNAACACATGTTC-T-TGTTTAA-A-TTTG-TTGTTGAGGACCTCGGGGAAGATTGGACT-TA-CCCAA----CTGAGTTTTCTCGTNAAATAAAGTCATTAT
Reference ( family-805 ) : TCTTCGAGATTCATTTAAGTACATACACGAAA-------TACATTCCCGAAACT-----------------AA-----------------TGTGTTGTATATCCCGAAGCCAAACTGTGAATTA-TTCGGA--AAATCTTC---GTCATATT-----C-----G---CAAGG---CTGTNATTTGGAATTCCATCCCTGA-TTT-ATTAAANAATCAGT---CAGTNTTTTACAG--T---AAANTAAA-----TATCTT-----CAA---TGGAGCAGATCA----TAGCATAC-CAGTCATA-TATAT----A-C------ATAATACTAATCTATATNG--TCTTTGAAAA-TTAGTAT---A----T--GAT-GTTCATTTGTTATATAATTAATGTTNNACACATGTTC-T-TGTTTAA-A-TTTG-TTGTTGAGGACCTCGGNGAAGATTGGACT-TA-TCCAA----CTGAGTTTTCTCGTNAAATAAAGTCATTAT
gi|1 : TCTTCTGTATTTATTTAAGTACATACACGAAG-------TACATTTCCGAAA--------------------A-----------------TGTGTTGTATATCCCAAAGCCAAACTGTGAATGA-TTCAGA--AACTCTTC---ATCATATTGTTCAT-----GTTCCAAAG---TTGTAATTTGGAATTTTATCCCTGA-TTT-ATGAAAAAATCAGT---CAGTCTTTTA---------AAAGTAAA-----TCGCTG-----TAA---TGGAGCAGATCA----TAGCATAC-CAGTCATA-TATAT----A-C------AAAATACTGATCTATATAG--TCTTTGAAAA-TTAGT----------T--GAT-GTTCATTTGTTATATAGTTAATGTTGAACAC-TGTTC-T-TGTTTAA-A-TTTG-TCGTTGAGTGTCACAGGAAAGATTGGACTAGG-CCCAA----ATGAATTTTCTCGTAAAATAAAGTAATAAT
gi|10 : TCTTCGAGATTCATTTAAGTACAAACACAAGA-------TCCAGTTCTGAAA--------------------A-----------------TGTGTT-TATATCCCAAAGCCAAACTGTGGATTA-CTTGGA--AAATC
gi|11 : tcaccttaCA----TTGTACACACAGT-ATA-TATAT----AAC------ATAATATTGAACTATATGG--TCTTTGAAAAATCAGTAT---A----TCTGAT-GTTCATTTGTTACACAATTAATGCTTTACAC-TGTTC-T-TGTTTAA-acaggggtatcgttttttggacat
gi|12 : agacgcTGTAATATGTTTATTGTTAAACACATGCCCAG-TGCTCAA-A-CTTGATTGTTGAGGGCCTCAGAGAAGATTTGGCT-TAATCCAA----CTGAGCTTTCTCTTTAGATAAAGT
gi|13 : TTCGAAAA-AAAATGTTCGA----T--GATTGTTCATTTGTTATATAATGGATGTTTAACGC-TGTTC-T-TGTTTAA-T-TTTG-TTATT
gi|14 : A---TGGAGCAGATCACATGTAGAATGC---GT-ATC-TAT-T----A-C------AT--------TTTATATTG--TCTTTCAAA---TA--AT---G----T--GAT-GGTCATACGTT-------TAATGTTAAACACACGTTC-T-TGTTTAA-taagtttttttctcgtaaaataaagt
gi|15 : TTAATGTACTACACATGTTC-T-TGCTTAA-AATTTG-TTGTTGAGGATTTAAGGGAAGATTG-------------------GAGTTTTCTCGTTGAATAAAGTCATTAT
gi|16 : CTAATCTATAT-----CTTTGAAAA-TTAGTAT---AAT--T--GAT-GTTCATTTGTTtttaatg
gi|2 : AATTGTGATTTAGTTTAGATAAAATATTC---AATGTGTT-----CTGTATG---CAAGGAAACCGCCATTCGGAAT--CAC-----A-TTC-AGGAGATAA--AAT---TTGTATTTAACAG--TTTAAAAGTAAA-----TATCTT-----TAAGAACGGAGCAGATCC----TAGCATAG-CAGTCATA-TGTAT----A-A------ATAATAATAATCTATATAA--TCTTTGACAA-TCTGTGT---A----TTTGAT-GGTCATTTGTTATATAATTACTGTTTCACAC-TGTTT-T-CGTTTAA---TTTG-TTGTTAATGACCTCGGTGGAGATTGGACT-TAGCCCAA----CTGAGTTT--CCGT-AAATTAAGTCATTAT
gi|3 : TCTTCGAGATTCATTTAAGTAAATTCCCGGAACTCAGGATCCACTTCAAAAATT------------------------------------TTTGTCGTGTACCCCATAGCCAAACTGCGAATTA-TCGGGA--AAATCTTT---GTCATATT----------------AAGGAA-CTGTAATCTAGAATTCCATCCGTGA-CTTAATTAAATAAACACT---CAGTATTTTACAG--CTTAAAACTAAA-----TATCTT-----CAA---TGTAGAAGATCA----CAGTATAC-CAGTTAAAGTATAT----A-C------ATTATACTATTCTAata
gi|4 : aatttcaccgacttaGTATTTTACAGATT---AAACTAAAATATATATATA-----CAG---TGAACCAGGTCA----CAACATGC-GAATCATA-TATATTTTAA-CTAATCTATAATATTGG--TATATCGTTTTTTTAAACA-TAAATAT---ATATTT--GAT-GATCATTTGTAATATGTATATTGTTGAATACATATTC-TCTATTCAATA-TTTG-TTGTGGAGGACCTCGAGAAATATTGGATT-TACTCCAATATTCAGAGCTATCTCGTGAAATGAAGTAATTAT
gi|5 : ttTCTTTGGGATTCATTTAAGTTCATAGATGAAA-------TACATTTCCGAAACTTAATGCCAACTTCAGAAAA-----------------TGTGTTGTATATCCCAAAGCCAAACTGAGAATTA-TTCAGA--AAATCTTT---GTCATATT----------------AAGG------------GGA--TGTAT-------TTT-ATTAAA-AATCAGT---CAATATTTTACAG--T-------TCAA-----T--CTT-----CAA---TGAAACAGATCA----TAGCATAC-CGGTCAAA-TATGT----A-C------ATAATACTAATCTATtattat
gi|6 : tcaccaccttaTCTTCGAGATTCATTTAAGTACATGCATGAAA-------TACATTCCCGAAACT-----------------AAAGATTCACTTCATAAAATGTGTTGTATATTCCGACGCCAAACAATGAATTA-TTTTTA--AAATGTTTGCAGTCATATT-----C-----A---GGAGA---TTTTTTTTTGGAAATCCATCCCTGATTTT-ATTAAACAATCATT---CAGTCTTTTACAG--TTA-AAAGTAAA-----TATATT-----CAA---TGGAACAGATCA----TAG
gi|7 : ttcaccacctta-----------------AA-----------------TATTCTGTATATCCCGAAGCCAAATTGTGAATGA-TTCGGA--AAATATTT---GTCAT--------------------------------------ATTCCATCCCTTATTTT-ATTAAACAATCAGTCAGCAGTCGTTTACAG--T------TTAAACG---TATTTTTTTTCCAG---TAGAGCAGAT-A----TAGCATA
gi|8 : tatttatctgagggataagtattaaccctaaTCTTCGAGATTCATTTAAGTACATACATGATT-------TACATTCCCGAAACTTCA--------------GA-----------------TTTTTTTTACATCCCAAAGCCAAACTGTGAATTA-TTTGAT--AAATCTTT---GTCATATT-----C-----A---GAA-T---CTGTAATTTTGAATTTCATCCCTGA-TTT-
gi|9 : atttcaccaccttaAAGACTAATCTATATGG--TCTTTGAAAA-TTAGTAT---ATT--T--GAT-GTTCATTTGTTATATAATTAATGTTTGTCAC-TGTTC-A-TTTTTAA-T-TTTG-TTGTTGGGGACCTCAGTGAAGATTG-----TA---CAA----CTGATTTTTCTCATAGAATAAAGTCATTAta
Alignments
lowQualScore : 2222222 99999999999999999999999999999999999999 1111 888888888888888888888888888888 1 222 22222 11111 1111111111111 33333333333 1 111 33333333333 1111
lowQualScore : 1111111 22222222222222222222222222222222222222 0 1 5 1 66 1111 0 444444444444444444444444444444 1 4 0 0 1 5 7 3 1 5 77 5 222 8 22222 44444 888 9999 66 6 5 0 8888888888888 0 6 66 5 1 0 0 33333333333 5 0 2 22 8 555 555 5 0 1 66666666666 4444 7
lowQualScore : ....... ...................................... . . . . .. .... . .............................. . . . . . . . . . . .. . ... . ..... ..... ... .... .. . . . ............. . . .. . . . . ........... . . . .. . ... ... . . . ........... .... .
lowQualScore : 7777777 22222222222222222222222222222222222222 7 4 0 1 99 4444 1 111111111111111111111111111111 7 3 7 7 4 7 8 5 0 7 99 7 999 6 11111 33333 888 4444 44 6 7 1 9999999999999 4 6 99 0 2 2 9 88888888888 0 2 4 11 2 444 666 7 7 0 55555555555 2222 5
consensus : TCTTCGAGATTCATTTAAGTACATACACGAAA-------TACATTTCCGAAACT-----------------AA-----------------TGTGTTGTATATCCCGAAGCCAAACTGTGAATTA-TTCGGA--AAATCTTC---GTCATATT---------C-------AAGG---CTGTAATTTGGAATTCCATCCCTGA-TTT-ATTAAACAATCAGTCAGTA-T--TTTACAG-TT--AAAGTAAA-----TATCTT-----CAA---TGGAGCAGATCA----TAGCATAC-CAGTCATA-TATAT----A-C------ATAATACTAATCTATATNGTCTTT--GAAAA-TTAGTAT---A--T-T--GAT-GTTCATTTGTTATATAATTAATGTTNAACACATGTTC-T-TGTTTAA-A-TTTG-TTGTTGAGGACCTCGGGGAAGATTGGACT-T-A-C-CCAA----CTGAGTTTTCTCGTNAAATAAAGTCATTAT
Reference ( family-805 ) : TCTTCGAGATTCATTTAAGTACATACACGAAA-------TACATTTCCGAAACT-----------------AA-----------------TGTGTTGTATATCCCGAAGCCAAACTGTGAATTA-TTCGGA--AAATCTTC---GTCATATT---------C-----G-AAGG---CTGTAATTTGGAATTCCATCCCTGA-TTT-ATTAAACAATCAGTCAGTA-T--TTTACAG-TT--AAANTAAA-----TATCTT-----CAA---TGGAGCAGATCA----TAGCATAC-CAGTCATA-TATAT----A-C------ATAATACTAATCTATATNGTCTTT--GAAAA-TTAGTAT---A--T----GAT-GTTCATTTGTTATATAATTAATGTTNAACACATGTTC-T-TGTTTAA-A-TTTG-TTGTTGAGGACCTCGGGGAAGATTGGACT-T-A-C-CCAA----CTGAGTTTTCTCGTNAAATAAAGTCATTAT
gi|1 : TCTTCTGTATTTATTTAAGTACATACACGAAG-------TACATTTCCGAAA--------------------A-----------------TGTGTTGTATATCCCAAAGCCAAACTGTGAATGA-TTCAGA--AACTCTTC---ATCATATTGTTCATGTTC-----C-AAAG---TTGTAATTTGGAATTTTATCCCTGA-TTT-ATGAAAAAATCAGTCAGTC-T--TTTA--------AAAGTAAA-----TCGCTG-----TAA---TGGAGCAGATCA----TAGCATAC-CAGTCATA-TATAT----A-C------AAAATACTGATCTATATAGTCTTT--GAAAA-TTAGT--------T----GAT-GTTCATTTGTTATATAGTTAATGTTGAACAC-TGTTC-T-TGTTTAA-A-TTTG-TCGTTGAGTGTCACAGGAAAGATTGGACTAG-G-C-CCAA----ATGAATTTTCTCGTAAAATAAAGTAATAAT
gi|10 : TCTTCGAGATTCATTTAAGTACAAACACAAGA-------TCCAGTTCTGAA--------------------AA-----------------TGTGTT-TATATCCCAAAGCCAAACTGTGGATTA-CTTGGA--AAATC
gi|11 : tcaccttaCA----TTGTACACACAGT-ATA-TATAT----AAC------ATAATATTGAACTATATGGTCTTT--GAAAAATCAGTAT---A--TCT--GAT-GTTCATTTGTTACACAATTAATGCTTTACAC-TGTTC-T-TGTTTAA-acaggggtatcgttttttggacat
gi|12 : agacgcTGTAATATGTTTATTGTTAAACACATGCCCAG-TGCTCAA-A-CTTGATTGTTGAGGGCCTCAGAGAAGATTTGGCT-TAA-T-CCAA----CTGAGCTTTCTCTTTAGATAAAGT
gi|13 : TTC--GAAAA-AAAATGTTCGA--T----GATTGTTCATTTGTTATATAATGGATGTTTAACGC-TGTTC-T-TGTTTAA-T-TTTG-TTATT
gi|14 : A---TGGAGCAGATCACATGTAGAATGC---GT-ATC-TAT-T----A-C------AT--------TTTATATTGTCTTT--CAAA---TA--AT---G--T----GAT-GGTCATACGTT-------TAATGTTAAACACACGTTC-T-TGTTTAA-taagtttttttctcgtaaaataaagt
gi|15 : TTAATGTACTACACATGTTC-T-TGCTTAA-AATTTG-TTGTTGAGGATTTAAGGGAAGATTG---------------------GAGTTTTCTCGTTGAATAAAGTCATTAT
gi|16 : CTAATCTATAT---CTTT--GAAAA-TTAGTAT---AATT----GAT-GTTCATTTGTTtttaatg
gi|2 : AATTGTGATTTAGTTTAGATAAAATATTC---AATGTGTT---------CTGTATGCAAGGAAACCGCCATTCGGAAT--CAC-----A-TTC-AGGAGATAA--AATTTGTA-T--TTAACAG-TTTAAAAGTAAA-----TATCTT-----TAAGAACGGAGCAGATCC----TAGCATAG-CAGTCATA-TGTAT----A-A------ATAATAATAATCTATATAATCTTT--GACAA-TCTGTGT---A--TTT--GAT-GGTCATTTGTTATATAATTACTGTTTCACAC-TGTTT-T-CGTTTAA---TTTG-TTGTTAATGACCTCGGTGGAGATTGGACT-T-AGC-CCAA----CTGAGTTT--CCGT-AAATTAAGTCATTAT
gi|3 : TCTTCGAGATTCATTTAAGTAAATTCCCGGAACTCAGGATCCACTTCAAAAATT------------------------------------TTTGTCGTGTACCCCATAGCCAAACTGCGAATTA-TCGGGA--AAATCTTT---GTCATATT-----------------AAGGAA-CTGTAATCTAGAATTCCATCCGTGA-CTTAATTAAATAAACACTCAGTA-T--TTTACAG-CTTAAAACTAAA-----TATCTT-----CAA---TGTAGAAGATCA----CAGTATAC-CAGTTAAAGTATAT----A-C------ATTATACTATTCTAata
gi|4 : aatttcaccgacttaGTA-T--TTTACAGATT--AAACTAAAATATATATATA-----CAG---TGAACCAGGTCA----CAACATGC-GAATCATA-TATATTTTAA-CTAATCTATAATATTGGT--ATATCGTTTTTTTAAACA-TAAATAT---A--TATTTGAT-GATCATTTGTAATATGTATATTGTTGAATACATATTC-TCTATTCAATA-TTTG-TTGTGGAGGACCTCGAGAAATATTGGATT-T-A-CTCCAATATTCAGAGCTATCTCGTGAAATGAAGTAATTAT
gi|5 : ttTCTTTGGGATTCATTTAAGTTCATAGATGAAA-------TACATTTCCGAAACTTAATGCCAACTTCAGAAAA-----------------TGTGTTGTATATCCCAAAGCCAAACTGAGAATTA-TTCAGA--AAATCTTT---GTCATATT-----------------AAGG------------GGA--TGTAT-------TTT-ATTAAA-AATCAGTCAATA-T--TTTACAG-TT--CAA------------TCTT-----CAA---TGAAACAGATCA----TAGCATAC-CGGTCAAA-TATGT----A-C------ATAATACTAATCTATtattat
gi|6 : tcaccaccttaTCTTCGAGATTCATTTAAGTACATGCATGAAA-------TACATTCCCGAAACT-----------------AAAGATTCACTTCATAAAATGTGTTGTATATTCCGACGCCAAACAATGAATTA-TTTTTA--AAATGTTTGCAGTCATATT---------CA----G-GAGA---TTTTTTTTTGGAAATCCATCCCTGATTTT-ATTAAACAATCATTCAGTC-T--TTTACAG-TTA-AAAGTAAA-----TATATT-----CAA---TGGAACAGATCA----TAG
gi|7 : ttcaccacctta-----------------AA-----------------TATTCTGTATATCCCGAAGCCAAATTGTGAATGA-TTCGGA--AAATATTT---GTCAT---------------------------------------ATTCCATCCCTTATTTT-ATTAAACAATCAGTCAGCAGTCGTTTACAG-TT------TAAACG---TATTTTTTTTCCAG---TAGAGCAGAT-A----TAGCATA
gi|8 : tatttatctgagggataagtattaaccctaaTCTTCGAGATTCATTTAAGTACATACATGATT-------TACATTCCCGAAACTTCA--------------GA-----------------TTTTTTTTACATCCCAAAGCCAAACTGTGAATTA-TTTGAT--AAATCTTT---GTCATATT---------C-----A-GAAT---CTGTAATTTTGAATTTCATCCCTGA-TTT-
gi|9 : atttcaccaccttaAAGACTAATCTATATGGTCTTT--GAAAA-TTAGTAT---ATTT----GAT-GTTCATTTGTTATATAATTAATGTTTGTCAC-TGTTC-A-TTTTTAA-T-TTTG-TTGTTGGGGACCTCAGTGAAGATTG-----T-A----CAA----CTGATTTTTCTCATAGAATAAAGTCATTAta
Alignments
lowQualScore : 2222222 99999999999999999999999999999999999999 22222222222 66666666666666666666666666 1 1111111111 22222 11111 1111111111111 2222222 1 111 33333333333 1111
lowQualScore : 1111111 22222222222222222222222222222222222222 0 1 5 1 66 22222222222 5 33333333333333333333333333 1 4 0 0 1 5 7 3 1 5 77 6666666666 22222 44444 888 9999 66 6 5 0 8888888888888 0 6 77 5 1111111 5 5 0 2 22 8 555 555 5 0 1 66666666666 4444 7
lowQualScore : ....... ...................................... . . . . .. ........... . .......................... . . . . . . . . . . .. .......... ..... ..... ... .... .. . . . ............. . . .. . ....... . . . . .. . ... ... . . . ........... .... .
lowQualScore : 7777777 22222222222222222222222222222222222222 7 4 0 1 99 44444444444 7 33333333333333333333333333 7 3 7 7 4 7 8 5 0 7 99 4444444444 11111 33333 888 4444 44 6 7 1 9999999999999 4 6 99 7 0000000 0 0 2 4 11 2 444 666 7 7 0 55555555555 2222 5
consensus : TCTTCGAGATTCATTTAAGTACATACACGAAA-------TACATTTCCGAAACT-----------------AA-----------------TGTGTTGTATATCCCGAAGCCAAACTGTGAATTA-TTCGGA--AAATCTTC---G------TC-ATATT----------CA--AGG---CTGTAATTTGGAATTCCATCCCTGA-TTT-ATTAAACAATCAGTCAGTA-T--TTTACAG-TT--AAAG-TAAA-----TATCTT-----CAA---TGGAGCAGATCA----TAGCATAC-CAGTCATA-TATAT----A-C------ATAATACTAATCTATATNGTCTTT--GAAAA-TTAGTAT-A-T---T-GAT-GTTCATTTGTTATATAATTAATGTTNAACACATGTTC-T-TGTTTAA-A-TTTG-TTGTTGAGGACCTCGGGGAAGATTGGACT-T-A-C-CCAA----CTGAGTTTTCTCGTNAAATAAAGTCATTAT
Reference ( family-805 ) : TCTTCGAGATTCATTTAAGTACATACACGAAA-------TACATTTCCGAAACT-----------------AA-----------------TGTGTTGTATATCCCGAAGCCAAACTGTGAATTA-TTCGGA--AAATCTTC---G------TC-ATATT----------CA--AGG---CTGTAATTTGGAATTCCATCCCTGA-TTT-ATTAAACAATCAGTCAGTA-T--TTTACAG-TT--AAAG-TAAA-----TATCTT-----CAA---TGGAGCAGATCA----TAGCATAC-CAGTCATA-TATAT----A-C------ATAATACTAATCTATATNGTCTTT--GAAAA-TTAGTAT-A-T---T-GAT-GTTCATTTGTTATATAATTAATGTTNAACACATGTTC-T-TGTTTAA-A-TTTG-TTGTTGAGGACCTCGGGGAAGATTGGACT-T-A-C-CCAA----CTGAGTTTTCTCGTNAAATAAAGTCATTAT
gi|1 : TCTTCTGTATTTATTTAAGTACATACACGAAG-------TACATTTCCGAAA--------------------A-----------------TGTGTTGTATATCCCAAAGCCAAACTGTGAATGA-TTCAGA--AACTCTTC---A------TC-ATATTGTTCATGTTCCA--AAG---TTGTAATTTGGAATTTTATCCCTGA-TTT-ATGAAAAAATCAGTCAGTC-T--TTTA--------AAAG-TAAA-----TCGCTG-----TAA---TGGAGCAGATCA----TAGCATAC-CAGTCATA-TATAT----A-C------AAAATACTGATCTATATAGTCTTT--GAAAA-TTAG------T---T-GAT-GTTCATTTGTTATATAGTTAATGTTGAACAC-TGTTC-T-TGTTTAA-A-TTTG-TCGTTGAGTGTCACAGGAAAGATTGGACTAG-G-C-CCAA----ATGAATTTTCTCGTAAAATAAAGTAATAAT
gi|10 : TCTTCGAGATTCATTTAAGTACAAACACAAGA-------TCCAGTTCTGAA--------------------AA-----------------TGTGTT-TATATCCCAAAGCCAAACTGTGGATTA-CTTGGA--AAATC
gi|11 : tcaccttaCA----TTGTACACACAGT-ATA-TATAT----AAC------ATAATATTGAACTATATGGTCTTT--GAAAAATCAGTAT-A-TC--T-GAT-GTTCATTTGTTACACAATTAATGCTTTACAC-TGTTC-T-TGTTTAA-acaggggtatcgttttttggacat
gi|12 : agacgcTGTAATATGTTTATTGTTAAACACATGCCCAG-TGCTCAA-A-CTTGATTGTTGAGGGCCTCAGAGAAGATTTGGCT-TAA-T-CCAA----CTGAGCTTTCTCTTTAGATAAAGT
gi|13 : ---T-GATTGTTCATTTGTTATATAATGGATGTTTAACGC-TGTTC-T-TGTTTAA-T-TTTG-TTATT
gi|14 : ttcgaaaaaaaatgttcgaA---TGGAGCAGATCACATGTAGAATGC---GT-ATC-TAT-T----A-C------AT--------TTTATATTGTCTTT--CAAA---TAATGT---------GAT-GGTCATACGTT-------TAATGTTAAACACACGTTC-T-TGTTTAA-taagtttttttctcgtaaaataaagt
gi|15 : TTAATGTACTACACATGTTC-T-TGCTTAA-AATTTG-TTGTTGAGGATTTAAGGGAAGATTG---------------------GAGTTTTCTCGTTGAATAAAGTCATTAT
gi|16 : CTAATCTATAT---CTTT--GAAAA-TTAGTATAA-T---T-GAT-GTTCATTTGTTtttaatg
gi|2 : AATTGTGATTTAGTTTAGATAAAATATTC---AATGTGTTCTGTATG----------CA--AGGAAACCGCCATTCGGAAT--CAC-----A-TTC-AGGAGATAA--AATTTGTA-T--TTAACAG-TTTAAAAG-TAAA-----TATCTT-----TAAGAACGGAGCAGATCC----TAGCATAG-CAGTCATA-TGTAT----A-A------ATAATAATAATCTATATAATCTTT--GACAA-TCTGTGT-A-T---TTGAT-GGTCATTTGTTATATAATTACTGTTTCACAC-TGTTT-T-CGTTTAA---TTTG-TTGTTAATGACCTCGGTGGAGATTGGACT-T-AGC-CCAA----CTGAGTTT--CCGT-AAATTAAGTCATTAT
gi|3 : TCTTCGAGATTCATTTAAGTAAATTCCCGGAACTCAGGATCCACTTCAAAAATT------------------------------------TTTGTCGTGTACCCCATAGCCAAACTGCGAATTA-TCGGGA--AAATCTTT---G------TC-ATATT-----------A--AGGAA-CTGTAATCTAGAATTCCATCCGTGA-CTTAATTAAATAAACACTCAGTA-T--TTTACAGCTT--AAAACTAAA-----TATCTT-----CAA---TGTAGAAGATCA----CAGTATAC-CAGTTAAAGTATAT----A-C------ATTATACTATTCTAata
gi|4 : aatttcaccgacttaGTA-T--TTTACAGATT--AAAC-TAAAATATATATATA-----CAG---TGAACCAGGTCA----CAACATGC-GAATCATA-TATATTTTAA-CTAATCTATAATATTGGT--ATATCGTTTTTTTAAACA-TAAATAT-A-TATTT-GAT-GATCATTTGTAATATGTATATTGTTGAATACATATTC-TCTATTCAATA-TTTG-TTGTGGAGGACCTCGAGAAATATTGGATT-T-A-CTCCAATATTCAGAGCTATCTCGTGAAATGAAGTAATTAT
gi|5 : ttTCTTTGGGATTCATTTAAGTTCATAGATGAAA-------TACATTTCCGAAACTTAATGCCAACTTCAGAAAA-----------------TGTGTTGTATATCCCAAAGCCAAACTGAGAATTA-TTCAGA--AAATCTTT---G------TC-ATATT-----------A--AGG------------GGA--TGTAT-------TTT-ATTAAA-AATCAGTCAATA-T--TTTACAG-TT--CAA-------------TCTT-----CAA---TGAAACAGATCA----TAGCATAC-CGGTCAAA-TATGT----A-C------ATAATACTAATCTATtattat
gi|6 : tcaccaccttaTCTTCGAGATTCATTTAAGTACATGCATGAAA-------TACATTCCCGAAACT-----------------AAAGATTCACTTCATAAAATGTGTTGTATATTCCGACGCCAAACAATGAATTA-TTTTTA--AAATGTTTGCAG------TC-ATATT----------CAGGAGA---TTTTTTTTTGGAAATCCATCCCTGATTTT-ATTAAACAATCATTCAGTC-T--TTTACAG-TTA-AAAG-TAAA-----TATATT-----CAA---TGGAACAGATCA----TAG
gi|7 : ttcaccacctta-----------------AA-----------------TATTCTGTATATCCCGAAGCCAAATTGTGAATGA-TTCGGA--AAATATTT---G------TC-AT-----------------------------------ATTCCATCCCTTATTTT-ATTAAACAATCAGTCAGCAGTCGTTTACAG-TT-------TAAACG---TATTTTTTTTCCAG---TAGAGCAGAT-A----TAGCATA
gi|8 : tatttatctgagggataagtattaaccctaaTCTTCGAGATTCATTTAAGTACATACATGATT-------TACATTCCCGAAACTTCA--------------GA-----------------TTTTTTTTACATCCCAAAGCCAAACTGTGAATTA-TTTGAT--AAATCTTT---G------TC-ATATT----------CAG-AAT---CTGTAATTTTGAATTTCATCCCTGA-TTT-
gi|9 : atttcaccaccttaAAGACTAATCTATATGGTCTTT--GAAAA-TTAGTAT-ATT---T-GAT-GTTCATTTGTTATATAATTAATGTTTGTCAC-TGTTC-A-TTTTTAA-T-TTTG-TTGTTGGGGACCTCAGTGAAGATTG-----T-A----CAA----CTGATTTTTCTCATAGAATAAAGTCATTAta
Alignments
lowQualScore : 2222222 99999999999999999999999999999999999999 22222222222 66666666666666666666666666 1 1111111111 22222 11111 1111111111111 2222222 1 111 33333333333 1111
lowQualScore : 1111111 22222222222222222222222222222222222222 0 1 5 1 66 22222222222 5 33333333333333333333333333 1 4 0 0 1 5 7 3 1 5 77 6666666666 22222 44444 888 9999 66 6 5 0 8888888888888 0 6 77 5 1111111 5 5 0 2 22 8 555 555 5 0 1 66666666666 4444 7
lowQualScore : ....... ...................................... . . . . .. ........... . .......................... . . . . . . . . . . .. .......... ..... ..... ... .... .. . . . ............. . . .. . ....... . . . . .. . ... ... . . . ........... .... .
lowQualScore : 7777777 22222222222222222222222222222222222222 7 4 0 1 99 44444444444 7 33333333333333333333333333 7 3 7 7 4 7 8 5 0 7 99 4444444444 11111 33333 888 4444 44 6 7 1 9999999999999 4 6 99 7 0000000 0 0 2 4 11 2 444 666 7 7 0 55555555555 2222 5
consensus : TCTTCGAGATTCATTTAAGTACATACACGAAA-------TACATTTCCGAAACT-----------------AA-----------------TGTGTTGTATATCCCGAAGCCAAACTGTGAATTA-TTCGGA--AAATCTTC---G------TC-ATATT----------CA--AGG---CTGTAATTTGGAATTCCATCCCTGA-TTT-ATTAAACAATCAGTCAGTA-T--TTTACAG-TT--AAAG-TAAA-----TATCTT-----CAA---TGGAGCAGATCA----TAGCATAC-CAGTCATA-TATAT----A-C------ATAATACTAATCTATATNGTCTTT--GAAAA-TTAGTAT-A-T---T-GAT-GTTCATTTGTTATATAATTAATGTTNAACACATGTTC-T-TGTTTAA-A-TTTG-TTGTTGAGGACCTCGGGGAAGATTGGACT-T-A-C-CCAA----CTGAGTTTTCTCGTNAAATAAAGTCATTAT
Reference ( family-805 ) : TCTTCGAGATTCATTTAAGTACATACACGAAA-------TACATTTCCGAAACT-----------------AA-----------------TGTGTTGTATATCCCGAAGCCAAACTGTGAATTA-TTCGGA--AAATCTTC---G------TC-ATATT----------CA--AGG---CTGTAATTTGGAATTCCATCCCTGA-TTT-ATTAAACAATCAGTCAGTA-T--TTTACAG-TT--AAAG-TAAA-----TATCTT-----CAA---TGGAGCAGATCA----TAGCATAC-CAGTCATA-TATAT----A-C------ATAATACTAATCTATATNGTCTTT--GAAAA-TTAGTAT-A-T---T-GAT-GTTCATTTGTTATATAATTAATGTTNAACACATGTTC-T-TGTTTAA-A-TTTG-TTGTTGAGGACCTCGGGGAAGATTGGACT-T-A-C-CCAA----CTGAGTTTTCTCGTNAAATAAAGTCATTAT
gi|1 : TCTTCTGTATTTATTTAAGTACATACACGAAG-------TACATTTCCGAAA--------------------A-----------------TGTGTTGTATATCCCAAAGCCAAACTGTGAATGA-TTCAGA--AACTCTTC---A------TC-ATATTGTTCATGTTCCA--AAG---TTGTAATTTGGAATTTTATCCCTGA-TTT-ATGAAAAAATCAGTCAGTC-T--TTTA--------AAAG-TAAA-----TCGCTG-----TAA---TGGAGCAGATCA----TAGCATAC-CAGTCATA-TATAT----A-C------AAAATACTGATCTATATAGTCTTT--GAAAA-TTAG------T---T-GAT-GTTCATTTGTTATATAGTTAATGTTGAACAC-TGTTC-T-TGTTTAA-A-TTTG-TCGTTGAGTGTCACAGGAAAGATTGGACTAG-G-C-CCAA----ATGAATTTTCTCGTAAAATAAAGTAATAAT
gi|10 : TCTTCGAGATTCATTTAAGTACAAACACAAGA-------TCCAGTTCTGAA--------------------AA-----------------TGTGTT-TATATCCCAAAGCCAAACTGTGGATTA-CTTGGA--AAATC
gi|11 : tcaccttaCA----TTGTACACACAGT-ATA-TATAT----AAC------ATAATATTGAACTATATGGTCTTT--GAAAAATCAGTAT-A-TC--T-GAT-GTTCATTTGTTACACAATTAATGCTTTACAC-TGTTC-T-TGTTTAA-acaggggtatcgttttttggacat
gi|12 : agacgcTGTAATATGTTTATTGTTAAACACATGCCCAG-TGCTCAA-A-CTTGATTGTTGAGGGCCTCAGAGAAGATTTGGCT-TAA-T-CCAA----CTGAGCTTTCTCTTTAGATAAAGT
gi|13 : ---T-GATTGTTCATTTGTTATATAATGGATGTTTAACGC-TGTTC-T-TGTTTAA-T-TTTG-TTATT
gi|14 : ttcgaaaaaaaatgttcgaA---TGGAGCAGATCACATGTAGAATGC---GT-ATC-TAT-T----A-C------AT--------TTTATATTGTCTTT--CAAA---TAATGT---------GAT-GGTCATACGTT-------TAATGTTAAACACACGTTC-T-TGTTTAA-taagtttttttctcgtaaaataaagt
gi|15 : TTAATGTACTACACATGTTC-T-TGCTTAA-AATTTG-TTGTTGAGGATTTAAGGGAAGATTG---------------------GAGTTTTCTCGTTGAATAAAGTCATTAT
gi|16 : CTAATCTATAT---CTTT--GAAAA-TTAGTATAA-T---T-GAT-GTTCATTTGTTtttaatg
gi|2 : AATTGTGATTTAGTTTAGATAAAATATTC---AATGTGTTCTGTATG----------CA--AGGAAACCGCCATTCGGAAT--CAC-----A-TTC-AGGAGATAA--AATTTGTA-T--TTAACAG-TTTAAAAG-TAAA-----TATCTT-----TAAGAACGGAGCAGATCC----TAGCATAG-CAGTCATA-TGTAT----A-A------ATAATAATAATCTATATAATCTTT--GACAA-TCTGTGT-A-T---TTGAT-GGTCATTTGTTATATAATTACTGTTTCACAC-TGTTT-T-CGTTTAA---TTTG-TTGTTAATGACCTCGGTGGAGATTGGACT-T-AGC-CCAA----CTGAGTTT--CCGT-AAATTAAGTCATTAT
gi|3 : TCTTCGAGATTCATTTAAGTAAATTCCCGGAACTCAGGATCCACTTCAAAAATT------------------------------------TTTGTCGTGTACCCCATAGCCAAACTGCGAATTA-TCGGGA--AAATCTTT---G------TC-ATATT-----------A--AGGAA-CTGTAATCTAGAATTCCATCCGTGA-CTTAATTAAATAAACACTCAGTA-T--TTTACAGCTT--AAAACTAAA-----TATCTT-----CAA---TGTAGAAGATCA----CAGTATAC-CAGTTAAAGTATAT----A-C------ATTATACTATTCTAata
gi|4 : aatttcaccgacttaGTA-T--TTTACAGATT--AAAC-TAAAATATATATATA-----CAG---TGAACCAGGTCA----CAACATGC-GAATCATA-TATATTTTAA-CTAATCTATAATATTGGT--ATATCGTTTTTTTAAACA-TAAATAT-A-TATTT-GAT-GATCATTTGTAATATGTATATTGTTGAATACATATTC-TCTATTCAATA-TTTG-TTGTGGAGGACCTCGAGAAATATTGGATT-T-A-CTCCAATATTCAGAGCTATCTCGTGAAATGAAGTAATTAT
gi|5 : ttTCTTTGGGATTCATTTAAGTTCATAGATGAAA-------TACATTTCCGAAACTTAATGCCAACTTCAGAAAA-----------------TGTGTTGTATATCCCAAAGCCAAACTGAGAATTA-TTCAGA--AAATCTTT---G------TC-ATATT-----------A--AGG------------GGA--TGTAT-------TTT-ATTAAA-AATCAGTCAATA-T--TTTACAG-TT--CAA-------------TCTT-----CAA---TGAAACAGATCA----TAGCATAC-CGGTCAAA-TATGT----A-C------ATAATACTAATCTATtattat
gi|6 : tcaccaccttaTCTTCGAGATTCATTTAAGTACATGCATGAAA-------TACATTCCCGAAACT-----------------AAAGATTCACTTCATAAAATGTGTTGTATATTCCGACGCCAAACAATGAATTA-TTTTTA--AAATGTTTGCAG------TC-ATATT----------CAGGAGA---TTTTTTTTTGGAAATCCATCCCTGATTTT-ATTAAACAATCATTCAGTC-T--TTTACAG-TTA-AAAG-TAAA-----TATATT-----CAA---TGGAACAGATCA----TAG
gi|7 : ttcaccacctta-----------------AA-----------------TATTCTGTATATCCCGAAGCCAAATTGTGAATGA-TTCGGA--AAATATTT---G------TC-AT-----------------------------------ATTCCATCCCTTATTTT-ATTAAACAATCAGTCAGCAGTCGTTTACAG-TT-------TAAACG---TATTTTTTTTCCAG---TAGAGCAGAT-A----TAGCATA
gi|8 : tatttatctgagggataagtattaaccctaaTCTTCGAGATTCATTTAAGTACATACATGATT-------TACATTCCCGAAACTTCA--------------GA-----------------TTTTTTTTACATCCCAAAGCCAAACTGTGAATTA-TTTGAT--AAATCTTT---G------TC-ATATT----------CAG-AAT---CTGTAATTTTGAATTTCATCCCTGA-TTT-
gi|9 : atttcaccaccttaAAGACTAATCTATATGGTCTTT--GAAAA-TTAGTAT-ATT---T-GAT-GTTCATTTGTTATATAATTAATGTTTGTCAC-TGTTC-A-TTTTTAA-T-TTTG-TTGTTGGGGACCTCAGTGAAGATTG-----T-A----CAA----CTGATTTTTCTCATAGAATAAAGTCATTAta
blockSeqs : CTCAGGA CTTAATGCCAACTTCAGAAAA A G T TA CAATGTGT T CAAGGAAACCGCCA C C T A T A A G CG TTTAAAAG ATATA TTTTC GAA CATG AC C G TTTAACTAATCT G TT A ATATT T T A TT A AG AA A A GGCTTAAT TATT T
blockSeqs : . CTAAAGATTCACTTCATAAAA A . T . TGCAG . CAGGAGATTTTTT G C T . T T C . . CTTAAAAC CG . . . C T . AAC T . . ATC . . T AA A TC TA . G GACTTAGC . T
blockSeqs : . CTTCAGA A . G . TG . AAGGAACTGTAA C C . . C T G . . ATTAAAC . . . . C C . AC A . . AAT . . A TA A T A . T GATTTACT . G
blockSeqs : . AA G . C . TG . CAGAATCTGTAA C C . . C T T . . TTAAAAG . . . . G C . AA C . . ATT . . A AA A T T . G TA . A
blockSeqs : . TT G . T . TG . AAGG T . . . . . G . . TTCAA . . . . C . . AC G . . AT . . T CT . T T . T . . .
blockSeqs : A . C . TG . . . . . . . . TT . . . . . . . AC . . . . . . A TC . T . .
blockSeqs : . T . . . . . . GA . T
blockSeqs : . TG . A
blockSeqCons : CTTCAAA******************************* NAGGAACCGTA*************** TTTAAAAC** ATT****
originalCons : TCTTCGAGATTCATTTAAGTACATACACGAAA-------TACATTTCCGAAACT-----------------AA-----------------TGTGTTGTATATCCCGAAGCCAAACTGTGAATTA-TTCGGA--AAATCTTC---G------TC-ATATT----------CA--AGG---CTGTAATTTGGAATTCCATCCCTGA-TTT-ATTAAACAATCAGTCAGTA-T--TTTACAG-TT--AAAG-TAAA-----TATCTT-----CAA---TGGAGCAGATCA----TAGCATAC-CAGTCATA-TATAT----A-C------ATAATACTAATCTATATNGTCTTT--GAAAA-TTAGTAT-A-T---T-GAT-GTTCATTTGTTATATAATTAATGTTNAACACATGTTC-T-TGTTTAA-A-TTTG-TTGTTGAGGACCTCGGGGAAGATTGGACT-T-A-C-CCAA----CTGAGTTTTCTCGTNAAATAAAGTCATTAT
finalCons : TCTTCGAGATTCATTTAAGTACATACACGAAA-------TACATTTCCGAAACTTCAAA-------------------------------TGTGTTGTATATCCCGAAGCCAAACTGTGAATTA-TTCGGA--AAATCTTC---G------TC-ATATTNAGGAACCGTA---------------TTTGGAATTCCATCCCTGA-TTT-ATTAAACAATCAGTCAGTA-T--TTTACAGTTTAAAAC--TAAA-----TATCTT-----CAA---TGGAGCAGATCA----TAGCATAC-CAGTCATA-TATAT----A-C------ATAATACTAATCTATATNGTCTTT--GAAAA-TTAGTATATT----T-GAT-GTTCATTTGTTATATAATTAATGTTNAACACATGTTC-T-TGTTTAA-A-TTTG-TTGTTGAGGACCTCGGGGAAGATTGGACT-T-A-C-CCAA----CTGAGTTTTCTCGTNAAATAAAGTCATTAT
Alignments
lowQualScore : 666666666666666666666666666666 1111 22222222222 5555555555555555555555555555555555 11 11111 1111111111111 111111 11111 1 3333333333 1111
lowQualScore : 6 1 888888888888888888888888888888 2222 0 1 5 1 66 22222222222 5 5 8888888888888888888888888888888888 0 0 0 5 5 6 7 3 1 5 77 7 22 44444 5 888 9999 66 6 5 0 8888888888888 0 6 66 444444 11 0 00000 2 22 8 555 888 5 0 1 6666666666 4444 7
lowQualScore : . . .............................. .... . . . . .. ........... . . .................................. . . . . . . . . . . .. . .. ..... . ... .... .. . . . ............. . . .. ...... .. . ..... . .. . ... ... . . . .......... .... .
lowQualScore : 7 4 000000000000000000000000000000 1111 7 4 0 1 99 44444444444 7 7 6666666666666666666666666666666666 7 7 7 7 7 7 8 5 0 7 99 3 77 33333 7 888 4444 44 6 7 1 9999999999999 4 6 99 666666 88 1 99999 4 11 2 444 666 7 7 0 5555555555 2222 5
consensus : TCTTCGAGATTCATTTAAGTACATACACGAAATACATT-TCCGAAACT-----------T-----------CA---AA----TGTGTTGTATATCCCGAAGCCAAACTGTGAATTA-TTCGGA--AAATCTTC---G------TC-ATAT-TA---AGG------AG--CTGT-A-TTTGGAATTCCATCCCTGA-TTT-A-TTAAACAATCAGTCAGTA-T--TTTACAGTTTAAAAGTAAA-----TATCTT-CAA---TGGAGCAGATCA----TAGCATAC-CAGTCATA-TATAT----A-C------ATAATACTAATCTATATNGTCTTT--GAAAA-T---TAGTATATTTGATG----TTCATTTGTTATATAATTAATGTTNAACACATGTTC-T-TGTTTAA-A-TTTG-TTGTTGAGGACCTCGGGGAAGATTGGACT-TA-C-CCAA----CTGAGTTTTCTCGTNAAATAAAGTCATTAT
Reference ( family-805 ) : TCTTCGAGATTCATTTAAGTACATACACGAAATACATT-TCCGAAACT-----------T-----------CA---AA----TGTGTTGTATATCCCGAAGCCAAACTGTGAATTA-TTCGGA--AAATCTTC---G------TC-ATAT-TN---AGG------AA--CCGT-A-TTTGGAATTCCATCCCTGA-TTT-A-TTAAACAATCAGTCAGTA-T--TTTACAGTTTAAAACTAAA-----TATCTT-CAA---TGGAGCAGATCA----TAGCATAC-CAGTCATA-TATAT----A-C------ATAATACTAATCTATATNGTCTTT--GAAAA-T---TAGTATATTTGATG----TTCATTTGTTATATAATTAATGTTNAACACATGTTC-T-TGTTTAA-A-TTTG-TTGTTGAGGACCTCGGGGAAGATTGGACT-TA-C-CCAA----CTGAGTTTTCTCGTNAAATAAAGTCATTAT
gi|1 : TCTTCTGTATTTATTTAAGTACATACACGAAGTACATT-TCCGAAA-------------------------------A----TGTGTTGTATATCCCAAAGCCAAACTGTGAATGA-TTCAGA--AACTCTTC---A------TC-ATAT-TGTTCATGTTCCAAAG--TTGT-AATTTGGAATTTTATCCCTGA-TTT-A-TGAAAAAATCAGTCAGTC-T--TTTA-------AAAGTAAA-----TCGCTG-TAA---TGGAGCAGATCA----TAGCATAC-CAGTCATA-TATAT----A-C------AAAATACTGATCTATATAGTCTTT--GAAAA-T---TAG-----TTGATG----TTCATTTGTTATATAGTTAATGTTGAACAC-TGTTC-T-TGTTTAA-A-TTTG-TCGTTGAGTGTCACAGGAAAGATTGGACTAGG-C-CCAA----ATGAATTTTCTCGTAAAATAAAGTAATAAT
gi|10 : TCTTCGAGATTCATTTAAGTACAAACACAAGATCCAGT-TCTGA----------------------------A---AA----TGTGTT-TATATCCCAAAGCCAAACTGTGGATTA-CTTGGA--AAATC
gi|11 : tcaccttaCA----TTGTACACACAGT-ATA-TATAT----AAC------ATAATATTGAACTATATGGTCTTT--GAAAAAT---CAGTATATCTGATG----TTCATTTGTTACACAATTAATGCTTTACAC-TGTTC-T-TGTTTAA-acaggggtatcgttttttggacat
gi|12 : agacgcTGTAATATGTTTATTGTTAAACACATGCCCAG-TGCTCAA-A-CTTGATTGTTGAGGGCCTCAGAGAAGATTTGGCT-TAAT-CCAA----CTGAGCTTTCTCTTTAGATAAAGT
gi|13 : TTC--GAAAA------AAAATGTTCGATGATTGTTCATTTGTTATATAATGGATGTTTAACGC-TGTTC-T-TGTTTAA-T-TTTG-TTATT
gi|14 : A---TGGAGCAGATCACATGTAGAATGC---GT-ATC-TAT-T----A-C------AT--------TTTATATTGTCTTT--CAAA---------TA-ATGTGATG----GTCATACGTT-------TAATGTTAAACACACGTTC-T-TGTTTAA-taagtttttttctcgtaaaataaagt
gi|15 : TTAATGTACTACACATGTTC-T-TGCTTAA-AATTTG-TTGTTGAGGATTTAAGGGAAGATTG--------------------GAGTTTTCTCGTTGAATAAAGTCATTAT
gi|16 : CTAATCTATAT---CTTT--GAAAA-T---TAGTATAATTGATG----TTCATTTGTTtttaatg
gi|2 : AATTGTGATTTAGTTTAGATAAAATATTC---AATGTGTTCTGTATGCA---AGG------AAA-CCGCCA-TTCGGAAT--CAC-----A-TTC-A-GGAGATAA--AATTTGTA-T--TTAACAGTTTAAAAGTAAA-----TATCTT-TAAGAACGGAGCAGATCC----TAGCATAG-CAGTCATA-TGTAT----A-A------ATAATAATAATCTATATAATCTTT--GACAA-T---CTGTGTATTTGATG----GTCATTTGTTATATAATTACTGTTTCACAC-TGTTT-T-CGTTT-A-A-TTTG-TTGTTAATGACCTCGGTGGAGATTGGACT-TAGC-CCAA----CTGAGTTT--CCGT-AAATTAAGTCATTAT
gi|3 : TCTTCGAGATTCATTTAAGTAAATTCCCGGAACTCAGGATCC---ACT-----------T-----------CA---AAAATTTTTGTCGTGTACCCCATAGCCAAACTGCGAATTA-TCGGGA--AAATCTTT---G------TC-ATAT-TA---AGG------AA--CTGT-AATCTAGAATTCCATCCGTGA-CTT-AATTAAATAAACACTCAGTA-T--TTTACAGCTTAAAACTAAA-----TATCTT-CAA---TGTAGAAGATCA----CAGTATAC-CAGTTAAAGTATAT----A-C------ATTATACTATTCTAata
gi|4 : aatttcaccgacttaGTA-T--TTTACAGATTAAA-CTAAAATATATATATA-CAG---TGAACCAGGTCA----CAACATGC-GAATCATA-TATATTTTAA-CTAATCTATAATATTGGT--ATATCGTTTTTTTAAACA-TAAATA-TATATTTGATG----ATCATTTGTAATATGTATATTGTTGAATACATATTC-TCTATTCAATA-TTTG-TTGTGGAGGACCTCGAGAAATATTGGATT-TA-CTCCAATATTCAGAGCTATCTCGTGAAATGAAGTAATTAT
gi|5 : ttTCTTTGGGATTCATTTAAGTTCATAGATGAAATACATT-TCCGAAACT-----------TAATGCCAACTTCAGAAAA----TGTGTTGTATATCCCAAAGCCAAACTGAGAATTA-TTCAGA--AAATCTTT---G------TC-ATAT-TA---AGG------GG--ATGT-A-T-------------------TTT-A-TTAAA-AATCAGTCAATA-T--TTTACAGTTCA--------------ATCTT-CAA---TGAAACAGATCA----TAGCATAC-CGGTCAAA-TATGT----A-C------ATAATACTAATCTATtattat
gi|6 : tcaccaccttaTCTTCGAGATTCATTTAAGTACATGCATGAAATACATT-CCCGAAACTAAAGATTCACTT-----------CATAAAA----TGTGTTGTATATTCCGACGCCAAACAATGAATTA-TTTTTA--AAATGTTTGCAG------TC-ATAT-TC---AGG------AGATTTTT-T-TTTGGAAATCCATCCCTGATTTT-A-TTAAACAATCATTCAGTC-T--TTTACAG-TTAAAAGTAAA-----TATATT-CAA---TGGAACAGATCA----TAG
gi|7 : ttcaccaccttaAACCC-----------T-----------AA---AA----TATTCTGTATATCCCGAAGCCAAATTGTGAATGA-TTCGGA--AAATATTT---G------TC-ATAT-T---------------------------------CCATCCCTTA-TTTTA-TTAAACAATCAGTCAGCAGTCGTTTACAGTTTAAACGTATT-----TTTTTTCCAG---TAGAGCAGAT-A----TAGCATA
gi|8 : tatttatctgagggataagtattTCTTCGAGATTCATTTAAGTACATACATGATTTACATT-CCCGAAACT-----------T-----------CA---GA----TTTTTTTTACATCCCAAAGCCAAACTGTGAATTA-TTTGAT--AAATCTTT---G------TC-ATAT-TC---AGA------AT--CTGTAA-TTTTGAATTTCATCCCTGA-TTT-
gi|9 : atttcaccaccttaAAGACTAATCTATATGGTCTTT--GAAAA-T---TAGTATATTTGATG----TTCATTTGTTATATAATTAATGTTTGTCAC-TGTTC-A-TTTTTAA-T-TTTG-TTGTTGGGGACCTCAGTGAAGATTG-----TA----CAA----CTGATTTTTCTCATAGAATAAAGTCATTAta