lowQualScore : 2222 1 11 222 11111 11111 33333333333333333 888888888888888 111111 111 2222222222 1 2222 1 1111 222 11
lowQualScore : 0000 5 1 8 5 4 55 2 3 3 777 888 6 777 00000 00000 66666666666666666 3 444444444444444 1 555555 8 0 444 5 66 0000000000 6 0 66 4 5 8888 4 0 3 2 4 0000 0 222 777 22 0 0 999 1
lowQualScore : .... . . . . . .. . . . ... ... . ... ..... ..... ................. . ............... . ...... . . ... . .. .......... . . .. . . .... . . . . . .... . ... ... .. . . ... .
lowQualScore : 8888 0 9 0 7 0 99 4 6 0 000 000 4 000 00000 00000 88888888888888888 9 222222222222222 1 888888 0 9 666 0 99 2222222222 0 4 99 5 0 1111 7 7 7 3 4 2222 8 444 222 44 6 8 222 0
consensus : AAAAAN-CTATATTTAGCTGGGATCCCAAT-ATCATGTGCGATT-ATCACGCGNTTATAATTGTTACGACGAA---AATTCCATNATGGCTG---CGC-----CCATG-----TT-----A----A-A-T--TGTAAATGATTTTCACA---------GAAATTA----T-AGAAATCAGGGACGATACCGGGA--CTT-T--TTT--A-------TTTATACACCA--ACATAGGAAGATCACTATGGCCGAATCCACGCCCAGGAAACAGCACTTTGTAAGAATGTATCNATCGACGTCATGTTGTAAATCTCAATGAACTGCGAATGTTACGATTAATCTGATTGGCTGAATTGTTATGAATATTAATT
Reference ( gi|5 ) : AAAAAA-CAATATTGAGCTGGGATCCCAAT-ATCATGTGCGATT-ATCACGCGATTATAATTATTACGACGAA---AA---CATTATGGCTG---CGC-----CCATG-----TT-----A----A-A----TGTAAATAATTTTCATATTA----TAGAAATTA----T-AGAAATCAGGGACGACACCGGGA--TTT-T--TTT--A-------TTTATGCATCA--ACATAGGAAGAGCACTTTCGCCGAATCAACGCCCAGGAAACAGCACATTGTAAGAATGTATCAATCGGCGTCATGTTTTAAATTTCAACAAACTGCGAATGTAACGATTAATCTGATTGGCTGAATTGTTATGAATATTAATT
gi|10 : AAAAAATCTATATTTAGCTGGGATCCCAAT-ATCATATGTGATT-ATCACACGATTATTATTGTTATGATGAA---AA---CATTATGGCTG---TGC-----CCATG-----TT-----A----A-A----TGTAAATGATTTT--TGTT-----------CTA----T-AGGAATCAGGGATAATACCAGGA--CTT-T--TTT--A-------TCTATACACCA--ACATAGGGAGATCAC--TGGTCGAAT
gi|2 : AAAAAT-CTATAGTTAACCAGGATTCCAATTATCATGTGCGATA-ACCACACATTTAT-ATTATTAAGATTAA---AATTCCATAATGGTTA---CACATTTGTCTTT-----TT-----A----ATACT--TGTAAATAATTTTCACA----------AGTTTA------AGATATCAGTAAGGA-ACCTCGA--CTT-T--TTTTAA-------TCTATACAT----ACATATGAAGACCACTAAGGCTGAATCCACACC----------CACATTG-AAGGTTATGCCGAACGGC----TGTT-------------------GA----AACGAGTACTCTGATTGGTTGAA
gi|18 : agAAAAAT-CTATATTTAGCTGGGATCCCAAT-ATCATGTGCGGAT-ATCATGT--TTATAA-TGTTACGAagaaaaatagctaaaaatagcaatattggaaatcacttattcaagaggaagaatttgaaaaggtcgtcatcagatcttacatttaataagatcaggtactttagtcagattgacatcgacccaaccag
gi|3 : agAAGAA-AATTATTTAGCTGGGA--------ATCGTGTG-GATT-ATCAGGCATTTAAAATTATTCCACTGAA---AATTCCATAACAGCTG---TGC-----CCATG-----TTTTATTA----ATACT--TGTAAATGATTT-------------AGAAATCAAGTTTGAGAAATCAGGTACGATACCGGGA--TTT-TTATTT--A-------CTTATACACCA--ATATACAAAGGTTATAATGGCCAAAACCACACCCA
gi|8 : atctcattaaaatcatatcctcaagaacgcttccctgtgggatcttgatgatgacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgATATTTAGCAGGGATACCAAT-ATCATGTGCGATT-ATCATGCG-TTATAATTGTTATAA---A---AA---CATTATGGCTG---TAC-----CCATG-----TT-----A----A-A----TATAAATGATTTTCA-----------AAAATCA----T-AGAAATCAGGGACGATACTGAG---TCT-T--TTT----------TTTATACACCA--ACATAGAAAGATCACTATGGCCAAATCAACGCCAAGGAAACAGCACTTAGTAAGAATGTTTCAATTGACGTCATG---TAAATCACAATGAATTGCAAATGTTA--GTCAATCTGATTGGCTGAATTGTTATGAATATTAATTcattgaaggtgagatgttatgtaatatgatggttgactgaaataac
gi|13 : aataatctATTTAGCTGGGATCCCAAT-aca
gi|6 : ctttgcatgagatctgaagacgacggatagaatgtcacattctgacaatctttccacaaggcaatcagagcatttatttacccgaagaaaatccttaAGCTGGGATACCAGT-ATCATGTGGGATTTAACAAGTTATTATTATTGATACTACGAA---AA---CAATATGGCTG---CAC-----CAATA-----TT-----A----A-A----TGAAAATGATTTTCC-----------GAAATTA----T-TGAAATTAAAGACGATACTGGGA--CTTCT--TTT--A-------TTTATACATCA--ACATA--------ACTATAGCCGAATCAATGTCCAAGAAATAACACTTTGTAGAAATGCAGCTATCAATGTCACGTTATTAATCTCAACGAACTGCAAATGTTATAATTAATCTGATTCGCTGAATTGTTGTGAATATTAATt
gi|4 : aagaaagatctatatttagctcAGCTAGGGTTCCAATTATCAAGTTCGATT-ATCACACATTTACAAATATTACGACGAAAATAA---TATAATGTCTGTAACGC-----CCATG-----TT-------------------TTAATAACT---ATATTATTTTTACAAGTTT----T-AGAAACCTGGGACGATACGGGGACTTTT-T--TTT--A-------TTAATACACTC--ACATAAGAATATCAATATGGCCGAATCCACACCCAaac
gi|7 : ttGATCTCGAT-ATAATGAATGATT-TTCATGTGATTTTAATTATAATGATGAA---AA---CATTGTGACTG---CGC-----CAATG-----TT-----A----A-A----TG------------ATATT-----CAGAAATTA----T-AGAAATCAGAAACGACACAAGGAC-TTT-T--TTT--AAAAAAATTTTA-ACATCA--ACATAGGAAGATCATTATGGCCGAATCAACGCCCAGGAAACAGCACTTTGTAAGAATGTATCAATCAACATCATGTTGAAAATCTTAATGAACTGCAAATGTTATGGTAATTCTGAATGGCTGAATTATTATGAATATCAATcagttaaagttatgtcgaacgccgttgaaatgagtactctgattggttaaataaaatagctaaaaatagctatattttaaatcaatttagtcaagaaggagaatttgaataggtcgtcttcaaatcttacaattataatgatcttgtactttagtcagattgggaa
gi|14 : aagactctagattctgcaAT-ATAATGTG-GATT-ATCACGCG-TT----TT-TTGAGACTAA---AA---CATGAT---------------------------------A----A-A----CATAAATGATTTTCA-----------GAAATTT----T-AGAAATTGGGGATGATACTGaac
gi|1 : ttatagttacatgtagctTCATGTGCGATT-ATCACGCGTCTATAATTGTTACGACGAA---AATTCCATAATGACTG---CGC-----CCATG-----TT-----ATTTTA-ATTCTTGTAAATGATTTTCACA----------AGTTTA------AGAAATCAGGAACGATTCCGGGA----C-T--TAA--A-------TTCATACACCACTACATTGAAAGa
gi|17 : atctcattaaaatatgcttcgctatgggatctggcgacggcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaccggaaaacaatctatagcttcggTAATTGTAACTATGAA---AATTCCACAATGGCTG---CGC-----CCATGTTTTTTT-----A----T-ACT--TGTAAACGATTTTCACAttatgccgcacggctgtggaatcgagtactttgattagttgaaataaagaaagctaaaaatagcgatattggaaatccagttattctagaagacattgaatatgtcgtcatcagatcatacctttagggaggacgtgcatttcagttagattgtgaa
gi|19 : CCGAATCCATGTCCAGGAAACAATACTTTGTAagtttgaggaa
gi|11 : agatcacagtgaAAACATC---TTGTAAAAATGTATCTGTCA-CAACATATTGTAAATTTTAATGACCTTTGAATGTATCGATTAATGTGATTAGCTGAATTGTTATGAATATTGAT
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|9 ): GCTTTGCTATGGGATCTGAGGATGACGCGTAAGGTCACTGTCAAACAGCCTTTTCGCCAGCCATTCAGAGCCTTGCTTTCAAGGTTTTGAAAGTGAAACGAGAAGTCTATTTTTACCTAAGGAAAAAAATCTATATTTAGCTGGAATTCCAATTATCACGTGCAAAACACATGTTTATAACTGTCATGATGAAAATTCTATAAT
Unaligned ( gi|12 ): AATCATATCCTCAAAACTACTTTGCTATGGGGTCTGATGACTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGA
Unaligned ( gi|15 ): GCACTTGAGGAATGAGAATTCGAATACTAGATCGTCATCAGATCTTACATTTAGGAAGATCATGTACTTTAGTCAGATTGATACTGGTTAAC
Unaligned ( gi|16 ): AAATCCTGTTGTGAGTAGAAGAGAGCTTGAATAGTTCGTCATCAGATCTTACATTTGGAAGATCGAGTACTTTAGTCAGATTGATCTT
Alignments
lowQualScore : 222 4444444444444444444444444444 33333333 111111 2222222 1111 33333333333 222222222
lowQualScore : 1 66 99999 3 1 3 6 3 3 1 4 2 555 2 666 0000000000000000000000000000 33333333 0 4 333333 4 66 6666666 55 3 0 55 4 2222 22222222222 77 222222222 1 6 3 1 6
lowQualScore : . .. ..... . . . . . . . . . ... . ... ............................ ........ . . ...... . .. ....... .. . . .. . .... ........... .. ......... . . . . .
lowQualScore : 0 11 11111 6 2 3 7 1 3 0 2 2 222 2 444 5555555555555555555555555555 55555555 1 0 333333 4 11 7777777 55 2 2 55 0 1111 99999999999 99 999999999 0 4 8 4 4
consensus : AAAAATC--TATATTTAGCT-----G-GGATCCCAA-T-ATCATGTGCGATT-ATCACGCGTTTATAATTGTTACGACGAAAATTCCATNATGGCTG---CGCCCATG-----T-----T---A----A-A---TTGTAAATGATTTTCACA-----GAAAT-TA--T---AGAAATCAGGGACGATACCGGGACTT-T--TTT-------ATTTATACACCA--ACATAGGAAGATCACTATGGCCGAATCCA--CGCCCA-GG----AAAC-----------AGC--ACTT---------TGTAAGAATGTATCAATCGACGTCATGTTGTAAATCTCAACGAACTGCGAATGTTACGATTAATCTGATTGGCTGAATTGTTATGAATATTAATT
Reference ( family-756 ) : AAAAANC--TATATTTAGCT-----G-GGATCCCAA-T-ATCATGTGCGATT-ATCACGCGNTTATAATTGTTACGACGAAAATTCCATNATGGCTG---CGCCCATG-----T-----T---A----A-A---TTGTAAATGATTTTCACA-----GAAAT-TA--T---AGAAATCAGGGACGATACCGGGACTT-T--TTT-------ATTTATACACCA--ACATAGGAAGATCACTATGGCCGAATCCA--CGCCCA-GG----AAAC-----------AGC--ACTT---------TGTAAGAATGTATCNATCGACGTCATGTTGTAAATCTCAATGAACTGCGAATGTTACGATTAATCTGATTGGCTGAATTGTTATGAATATTAATT
gi|1 : TCATGTGCGATT-ATCACGCGTCTATAATTGTTACGACGAAAATTCCATAATGACTG---CGCCCATG-----T-----T---ATTTTA-ATTCTTGTAAATGATTTTCACA------AGTT-TA------AGAAATCAGGAACGATTCCGGGAC---T--TAA-------ATTCATACACCACTACATTGAAAG----TTAT-GCCG----CA--CGGCTGTGG----AATCG----------AGT--ACTT---------TG
gi|10 : atctcattaaaatatgcttcgctatgggatctggcgacggcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaccggaaaacaatctatagcttcggAAAAATC--TATATTTAGCT-----G-GGATCCCAA-T-ATCATATGTGATT-ATCACACGATTATTATTGTTATGATGAAAA---CATTATGGCTG---TGCCCATG-----T-----T---A----A-A----TGTAAATGATTTTTGT----------TCTA--T---AGGAATCAGGGATAATACCAGGACTT-T--TTT-------ATCTATACACCA--ACATAGGGAGATCAC--TGGTCGAATattagttgaaataaagaaagctaaaaatagcgatattggaaatccagttattctagaagacattgaatatgtcgtcatcagatcatacctttagggaggacgtgcatttcagttagattgtgaa
gi|11 : a--ACATAAGACGATCACTATGGCCAAATCCAGTTGTTCC-GGTTTAAAACTCTCGATTTTAAACTTACTTAAAACATCTTGTAAAAATGTATCTGTC-ACAACATATTGTAAATTTTAATGACCTTTGAATGTATCGATTAATGTGATTAGCTGAATTGTTATGAATATTGAT
gi|13 : AAAATCCTTA-ATTTAGCT-----G-GGATCCCAA-T-aatat
gi|14 : ctttgcatgagatctgaagacgacggatagaatgtcacattctgacaatctttccacaaggcaatcagagcatttatttacccgaagA-T-ATAATGTG-GATT-ATCACGCGTTT-----T-TTGAGACTAAAA---------------------CATG-----A-----T---A----A-A---C-ATAAATGATTTTCA-------GAAAT-TT--T---AGAAATTGGGGATGATACTGt
gi|17 : ttatagttacatgtagctTAATTGTAACTATGAAAATTCCACAATGGCTG---CGCCCATGTTTTTT-----T---AT---A-C---TTGTAAACGATTTTCACA-----a
gi|18 : AAAAATC--TATATTTAGCT-----G-GGATCCCAA-T-ATCATGTGCGGAT-ATCA--TGTTTATAA-TGTTACGAagtttgaggaa
gi|19 : agAGATCACAGTGACCGAATCCA--TGTCCA-GG----AAAC-----------AAT--ACTT---------TGTA
gi|2 : AAAAATC--TATAGTTAACC-----A-GGATTCCAA-TTATCATGTGCGATA-ACCACACATTTATA-TTATTAAGATTAAAATTCCATAATGGTTA---CACATTTG-----TCTTTTT---A----ATAC--TTGTAAATAATTTTCACA------AGTT-TA------AGATATCAGTAAGGA-ACCTCGACTT-T--TTTTA-----ATCTATACAT----ACATATGAAGACCACTAAGGCTGAATCCA--CACCCA-
gi|3 : agTATTTAGCT-----G-GGA---------ATCGTGTG-GATT-ATCAGGCATTTAAAATTATTCCACTGAAAATTCCATAACAGCTG---TGCCCATGTT---T-----T---ATT--A-ATACTTGTAAATGATTT----A-----GAAAT-CAAGTTTGAGAAATCAGGTACGATACCGGGATTT-TTATTT-------ACTTATACACCA--ATATACAAAGGTTATAATGGCCAAAACCA--CACCCA-cattgaaggttatgccgaacggctgttgaaacgagtactctgattggttgaaagaaaaatagctaaaaatagcaatattggaaatcacttattcaagaggaagaatttgaaaaggtcgtcatcagatcttacatttaataagatcaggtactttagtcagattgacatcgacccaaccag
gi|4 : atctcattaaaatcatatcctcaagaacgcttccctgtgggatcttgatgatgacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaagaaaatTTAGCT-----A-GGGTTCCAA-TTATCAAGTTCGATT-ATCACACATTTACAAATATTACGACGAAAATAATATAATGTCTGTAACGCCCATG-----T-----TTTAAT---A-A---CTATA--TTATTTTTACA-------AGT-TT--T---AGAAACCTGGGACGATACGGGGACTT-T--TTTTT-----ATTAATACACTC--ACATAAGAATATCAATATGGCCGAATCCA--CACCCA-cattgaaggtgagatgttatgtaatatgatggttgactgaaataac
gi|5 : AAAAAAC--AATATTGAGCT-----G-GGATCCCAA-T-ATCATGTGCGATT-ATCACGCGATTATAATTATTACGACGAAAA---CATTATGGCTG---CGCCCATG-----T-----T---A----A-A---T-GTAAATAATTTTCATATTATAGAAAT-TA--T---AGAAATCAGGGACGACACCGGGATTT-T--TTT-------ATTTATGCATCA--ACATAGGAAGAGCACTTTCGCCGAATCAA--CGCCCA-GG----AAAC-----------AGC--ACAT---------TGTAAGAATGTATCAATCGGCGTCATGTTTTAAATTTCAACAAACTGCGAATGTAACGATTAATCTGATTGGCTGAATTGTTATGAATATTAATTcagttaaagttatgtcgaacgccgttgaaatgagtactctgattggttaaataaaatagctaaaaatagctatattttaaatcaatttagtcaagaaggagaatttgaataggtcgtcttcaaatcttacaattataatgatcttgtactttagtcagattgggaa
gi|6 : AAAGATC--TATATTTAGCTCAGCTG-GGATACCAG-T-ATCATGTGGGATTTAACAAGTTATTATTATTGATACTACGAAAA---CAATATGGCTG---CACCAATA-----T-----T---A----A-A---T-GAAAATGATTTTC-C------GAAAT-TA--T---TGAAATTAAAGACGATACTGGGACTTCT--TTT-------ATTTATACATCA--ACATA--------ACTATAGCCGAATCAA--TGTCCA-AG----AAAT-----------AAC--ACTT---------TGTAGAAATGCAGCTATCAATGTCACGTTATTAATCTCAACGAACTGCAAATGTTATAATTAATCTGATTCGCTGAATTGTTGTGAATATTAAT
gi|7 : aagAAGACTC--TAGATT---CT-----GCAGATCTCGA-T-ATAATGAATGATT-TTCATGTGATTTTAATTATAATGATGAAAA---CATTGTGACTG---CGCCAATG-----T-----T---A----A-A---T-------GATATTCA-------GAAAT-TA--T---AGAAATCAGAAACGACACAAGGACTT-T--TTTTAAAAAAATTTTAACATCA--ACATAGGAAGATCATTATGGCCGAATCAA--CGCCCA-GG----AAAC-----------AGC--ACTT---------TGTAAGAATGTATCAATCAACATCATGTTGAAAATCTTAATGAACTGCAAATGTTATGGTAATTCTGAATGGCTGAATTATTATGAATATCAATaac
gi|8 : AATAATC--TATATTTAGCA-----G-GGATACCAA-T-ATCATGTGCGATT-ATCATGCG-TTATAATTGTTATAA---AAA---CATTATGGCTG---TACCCATG-----T-----T---A----A-A---T-ATAAATGATTTTCA-------AAAAT-CA--T---AGAAATCAGGGACGATACTGAGTCTT-T--TTT---------TTATACACCA--ACATAGAAAGATCACTATGGCCAAATCAA--CGCCAA-GG----AAAC-----------AGC--ACTT---------AGTAAGAATGTTTCAATTGACGTCA---TGTAAATCACAATGAATTGCAAATGTTA--GTCAATCTGATTGGCTGAATTGTTATGAATATTAATTaac
gi|9 : AAAAATC--TATATTTAGCT-----G-GAATTCCAATT-ATCACGTGCAA---AACACATGTTTATAACTGTCATGATGAAAATTCTATAATaca
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): AATCATATCCTCAAAACTACTTTGCTATGGGGTCTGATGACTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGA
Unaligned ( gi|15 ): GCACTTGAGGAATGAGAATTCGAATACTAGATCGTCATCAGATCTTACATTTAGGAAGATCATGTACTTTAGTCAGATTGATACTGGTTAAC
Unaligned ( gi|16 ): AAATCCTGTTGTGAGTAGAAGAGAGCTTGAATAGTTCGTCATCAGATCTTACATTTGGAAGATCGAGTACTTTAGTCAGATTGATCTT
Alignments
lowQualScore : 222 4444444444444444444444444444 33333333 111111 2222222 1111 33333333333 222222222 111
lowQualScore : 55 99999 3 1 3 6 3 44 2 555 2 666 0000000000000000000000000000 33333333 0 4 333333 4 66 6666666 55 3 0 55 4 2222 22222222222 77 222222222 1 6 3 6 111 3
lowQualScore : .. ..... . . . . . .. . ... . ... ............................ ........ . . ...... . .. ....... .. . . .. . .... ........... .. ......... . . . . ... .
lowQualScore : 55 11111 6 2 3 7 1 66 2 222 2 444 5555555555555555555555555555 55555555 1 0 333333 4 11 7777777 55 2 2 55 0 1111 99999999999 99 999999999 4 4 8 3 777 7
consensus : AAAAATC--TATATTTAGCT-----G-GGATCCCAA-T-ATCATGTGCGATTATCACGCGTT--TATAATTGTTACGACGAAAATTCCATNATGGCTG---CGCCCATG-----T-----T---A----A-A---TTGTAAATGATTTTCACA-----GAAAT-TA--T---AGAAATCAGGGACGATACCGGGACTT-T--TTT-------ATTTATACACCA--ACATAGGAAGATCACTATGGCCGAATCCA--CGCCCA-GG----AAAC-----------AGC--ACTT---------TGTAAGAATGTATCAATCGACGTCATGTTGTAAATCTCAACGAACTGCGAATGTT---ACGATTAATCTGATTGGCTGAATTGTTATGAATATTAATT
Reference ( family-756 ) : AAAAATC--TATATTTAGCT-----G-GGATCCCAA-T-ATCATGTGCGATTATCACGCGTT--TATAATTGTTACGACGAAAATTCCATNATGGCTG---CGCCCATG-----T-----T---A----A-A---TTGTAAATGATTTTCACA-----GAAAT-TA--T---AGAAATCAGGGACGATACCGGGACTT-T--TTT-------ATTTATACACCA--ACATAGGAAGATCACTATGGCCGAATCCA--CGCCCA-GG----AAAC-----------AGC--ACTT---------TGTAAGAATGTATCAATCGACGTCATGTTGTAAATCTCAACGAACTGCGAATGTT---ACGATTAATCTGATTGGCTGAATTGTTATGAATATTAATT
gi|1 : TCATGTGCGATTATCACGCGTC--TATAATTGTTACGACGAAAATTCCATAATGACTG---CGCCCATG-----T-----T---ATTTTA-ATTCTTGTAAATGATTTTCACA------AGTT-TA------AGAAATCAGGAACGATTCCGGGAC---T--TAA-------ATTCATACACCACTACATTGAAAG----TTAT-GCCG----CA--CGGCTGTGG----AATCG----------AGT--ACTT---------TG
gi|10 : atctcattaaaatatgcttcgctatgggatctggcgacggcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaccggaaaacaatctatagcttcggAAAAATC--TATATTTAGCT-----G-GGATCCCAA-T-ATCATATGTGATTATCACACGAT--TATTATTGTTATGATGAAAA---CATTATGGCTG---TGCCCATG-----T-----T---A----A-A----TGTAAATGATTTTTGT----------TCTA--T---AGGAATCAGGGATAATACCAGGACTT-T--TTT-------ATCTATACACCA--ACATAGGGAGATCAC--TGGTCGAATattagttgaaataaagaaagctaaaaatagcgatattggaaatccagttattctagaagacattgaatatgtcgtcatcagatcatacctttagggaggacgtgcatttcagttagattgtgaa
gi|11 : a--ACATAAGACGATCACTATGGCCAAATCCAGTTGTTCC-GGTTTAAAACTCTCGATTTTAAACTTACTTAAAACATCTTGTAAAAATGTATCTGTC-ACAACATATTGTAAATTTTAATGACCTTTGAATGTA---TCGATTAATGTGATTAGCTGAATTGTTATGAATATTGAT
gi|13 : AAAATCCTTA-ATTTAGCT-----G-GGATCCCAA-T-aatat
gi|14 : ctttgcatgagatctgaagacgacggatagaatgtcacattctgacaatctttccacaaggcaatcagagcatttatttacccgaagA-T-ATAATGTG-GATTATCACGCGTT--T-----T-TTGAGACTAAAA---------------------CATG-----A-----T---A----A-A---C-ATAAATGATTTTCA-------GAAAT-TT--T---AGAAATTGGGGATGATACTGt
gi|17 : ttatagttacatgtagctTAATTGTAACTATGAAAATTCCACAATGGCTG---CGCCCATGTTTTTT-----T---AT---A-C---TTGTAAACGATTTTCACA-----a
gi|18 : AAAAATC--TATATTTAGCT-----G-GGATCCCAA-T-ATCATGTGCGGATATCA--TGTT--TATAA-TGTTACGAagtttgaggaa
gi|19 : agAGATCACAGTGACCGAATCCA--TGTCCA-GG----AAAC-----------AAT--ACTT---------TGTA
gi|2 : AAAAATC--TATAGTTAACC-----A-GGATTCCAA-TTATCATGTGCGATAACCACACATT--TATA-TTATTAAGATTAAAATTCCATAATGGTTA---CACATTTG-----TCTTTTT---A----ATAC--TTGTAAATAATTTTCACA------AGTT-TA------AGATATCAGTAAGGA-ACCTCGACTT-T--TTTTA-----ATCTATACAT----ACATATGAAGACCACTAAGGCTGAATCCA--CACCCA-
gi|2 : agCGAACGGC---TGTTGAAACGAGTACTCTGATTGGTTGAAcattgaaggttatgccgaacggctgttgaaacgagtactctgattggttgaaagaaaaatagctaaaaatagcaatattggaaatcacttattcaagaggaagaatttgaaaaggtcgtcatcagatcttacatttaataagatcaggtactttagtcagattgacatcgacccaaccag
gi|3 : agaaaaatctatagttaaccaggattccaattatcatgtgcgataaccacacatttatattattaagattaaaattccataatggttacacatttgtctttttaatacttgtaaataattttcacaagtttaagatatcagtaaggaacctcgactttttttaatctatacatacatatgaagaccactaaggctgaatccacacccacattgaaggttatgcAAAAT-----TATTTAGCT-----G-GGA---------ATCGTGTG-GATTATCAGGCATT--TAAAATTATTCCACTGAAAATTCCATAACAGCTG---TGCCCATGTT---T-----T---ATT--A-ATACTTGTAAATGATTT----A-----GAAAT-CAAGTTTGAGAAATCAGGTACGATACCGGGATTT-TTATTT-------ACTTATACACCA--ATATACAAAGGTTATAATGGCCAAAACCA--CACCCA-agaaaaatagctaaaaatagcaatattggaaatcacttattcaagaggaagaatttgaaaaggtcgtcatcagatcttacatttaataagatcaggtactttagtcagattgacatcgacccaaccag
gi|4 : atctcattaaaatcatatcctcaagaacgcttccctgtgggatcttgatgatgacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaagTTAGCT-----A-GGGTTCCAA-TTATCAAGTTCGATTATCACACATT--TACAAATATTACGACGAAAATAATATAATGTCTGTAACGCCCATG-----T-----TTTAAT---A-A---CTATA--TTATTTTTACA-------AGT-TT--T---AGAAACCTGGGACGATACGGGGACTT-T--TTTTT-----ATTAATACACTC--ACATAAGAATATCAATATGGCCGAATCCA--CACCCA-cattgaaggtgagatgttatgtaatatgatggttgactgaaataac
gi|5 : AAAAAAC--AATATTGAGCT-----G-GGATCCCAA-T-ATCATGTGCGATTATCACGCGAT--TATAATTATTACGACGAAAA---CATTATGGCTG---CGCCCATG-----T-----T---A----A-A---T-GTAAATAATTTTCATATTATAGAAAT-TA--T---AGAAATCAGGGACGACACCGGGATTT-T--TTT-------ATTTATGCATCA--ACATAGGAAGAGCACTTTCGCCGAATCAA--CGCCCA-GG----AAAC-----------AGC--ACAT---------TGTAAGAATGTATCAATCGGCGTCATGTTTTAAATTTCAACAAACTGCGAATGTA---ACGATTAATCTGATTGGCTGAATTGTTATGAATATTAATTcagttaaagttatgtcgaacgccgttgaaatgagtactctgattggttaaataaaatagctaaaaatagctatattttaaatcaatttagtcaagaaggagaatttgaataggtcgtcttcaaatcttacaattataatgatcttgtactttagtcagattgggaa
gi|6 : AAAGATC--TATATTTAGCTCAGCTG-GGATACCAG-T-ATCATGTGGGATT-TAACAAGTTATTATTATTGATACTACGAAAA---CAATATGGCTG---CACCAATA-----T-----T---A----A-A---T-GAAAATGATTTTC-C------GAAAT-TA--T---TGAAATTAAAGACGATACTGGGACTTCT--TTT-------ATTTATACATCA--ACATA--------ACTATAGCCGAATCAA--TGTCCA-AG----AAAT-----------AAC--ACTT---------TGTAGAAATGCAGCTATCAATGTCACGTTATTAATCTCAACGAACTGCAAATGTT---ATAATTAATCTGATTCGCTGAATTGTTGTGAATATTAAT
gi|7 : aagAAGACTC--TAGATT---CT-----GCAGATCTCGA-T-ATAATGAATGATTTTCATGTGAT--TTTAATTATAATGATGAAAA---CATTGTGACTG---CGCCAATG-----T-----T---A----A-A---T-------GATATTCA-------GAAAT-TA--T---AGAAATCAGAAACGACACAAGGACTT-T--TTTTAAAAAAATTTTAACATCA--ACATAGGAAGATCATTATGGCCGAATCAA--CGCCCA-GG----AAAC-----------AGC--ACTT---------TGTAAGAATGTATCAATCAACATCATGTTGAAAATCTTAATGAACTGCAAATGTT---ATGGTAATTCTGAATGGCTGAATTATTATGAATATCAATaac
gi|8 : AATAATC--TATATTTAGCA-----G-GGATACCAA-T-ATCATGTGCGATTATCATGCGTT---ATAATTGTTATAA---AAA---CATTATGGCTG---TACCCATG-----T-----T---A----A-A---T-ATAAATGATTTTCA-------AAAAT-CA--T---AGAAATCAGGGACGATACTGAGTCTT-T--TTT---------TTATACACCA--ACATAGAAAGATCACTATGGCCAAATCAA--CGCCAA-GG----AAAC-----------AGC--ACTT---------AGTAAGAATGTTTCAATTGACGTCA---TGTAAATCACAATGAATTGCAAATGTT---A--GTCAATCTGATTGGCTGAATTGTTATGAATATTAATTaac
gi|9 : AAAAATC--TATATTTAGCT-----G-GAATTCCAATT-ATCACGTGCAA--AACACATGTT--TATAACTGTCATGATGAAAATTCTATAATaca
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): AATCATATCCTCAAAACTACTTTGCTATGGGGTCTGATGACTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGA
Unaligned ( gi|15 ): GCACTTGAGGAATGAGAATTCGAATACTAGATCGTCATCAGATCTTACATTTAGGAAGATCATGTACTTTAGTCAGATTGATACTGGTTAAC
Unaligned ( gi|16 ): AAATCCTGTTGTGAGTAGAAGAGAGCTTGAATAGTTCGTCATCAGATCTTACATTTGGAAGATCGAGTACTTTAGTCAGATTGATCTT
Alignments
lowQualScore : 222 4444444444444444444444444444 33333333 111111 2222222 1111 33333333333 222222222 111
lowQualScore : 55 99999 3 1 3 6 3 44 2 555 2 666 0000000000000000000000000000 33333333 0 4 333333 4 66 6666666 55 3 0 55 4 2222 22222222222 77 222222222 1 6 3 6 111 3
lowQualScore : .. ..... . . . . . .. . ... . ... ............................ ........ . . ...... . .. ....... .. . . .. . .... ........... .. ......... . . . . ... .
lowQualScore : 55 11111 6 2 3 7 1 66 2 222 2 444 5555555555555555555555555555 55555555 1 0 333333 4 11 7777777 55 2 2 55 0 1111 99999999999 99 999999999 4 4 8 3 777 7
consensus : AAAAATC--TATATTTAGCT-----G-GGATCCCAA-T-ATCATGTGCGATTATCACGCGTT--TATAATTGTTACGACGAAAATTCCATNATGGCTG---CGCCCATG-----T-----T---A----A-A---TTGTAAATGATTTTCACA-----GAAAT-TA--T---AGAAATCAGGGACGATACCGGGACTT-T--TTT-------ATTTATACACCA--ACATAGGAAGATCACTATGGCCGAATCCA--CGCCCA-GG----AAAC-----------AGC--ACTT---------TGTAAGAATGTATCAATCGACGTCATGTTGTAAATCTCAACGAACTGCGAATGTT---ACGATTAATCTGATTGGCTGAATTGTTATGAATATTAATT
Reference ( family-756 ) : AAAAATC--TATATTTAGCT-----G-GGATCCCAA-T-ATCATGTGCGATTATCACGCGTT--TATAATTGTTACGACGAAAATTCCATNATGGCTG---CGCCCATG-----T-----T---A----A-A---TTGTAAATGATTTTCACA-----GAAAT-TA--T---AGAAATCAGGGACGATACCGGGACTT-T--TTT-------ATTTATACACCA--ACATAGGAAGATCACTATGGCCGAATCCA--CGCCCA-GG----AAAC-----------AGC--ACTT---------TGTAAGAATGTATCAATCGACGTCATGTTGTAAATCTCAACGAACTGCGAATGTT---ACGATTAATCTGATTGGCTGAATTGTTATGAATATTAATT
gi|1 : TCATGTGCGATTATCACGCGTC--TATAATTGTTACGACGAAAATTCCATAATGACTG---CGCCCATG-----T-----T---ATTTTA-ATTCTTGTAAATGATTTTCACA------AGTT-TA------AGAAATCAGGAACGATTCCGGGAC---T--TAA-------ATTCATACACCACTACATTGAAAG----TTAT-GCCG----CA--CGGCTGTGG----AATCG----------AGT--ACTT---------TG
gi|10 : atctcattaaaatatgcttcgctatgggatctggcgacggcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaccggaaaacaatctatagcttcggAAAAATC--TATATTTAGCT-----G-GGATCCCAA-T-ATCATATGTGATTATCACACGAT--TATTATTGTTATGATGAAAA---CATTATGGCTG---TGCCCATG-----T-----T---A----A-A----TGTAAATGATTTTTGT----------TCTA--T---AGGAATCAGGGATAATACCAGGACTT-T--TTT-------ATCTATACACCA--ACATAGGGAGATCAC--TGGTCGAATattagttgaaataaagaaagctaaaaatagcgatattggaaatccagttattctagaagacattgaatatgtcgtcatcagatcatacctttagggaggacgtgcatttcagttagattgtgaa
gi|11 : a--ACATAAGACGATCACTATGGCCAAATCCAGTTGTTCC-GGTTTAAAACTCTCGATTTTAAACTTACTTAAAACATCTTGTAAAAATGTATCTGTC-ACAACATATTGTAAATTTTAATGACCTTTGAATGTA---TCGATTAATGTGATTAGCTGAATTGTTATGAATATTGAT
gi|13 : AAAATCCTTA-ATTTAGCT-----G-GGATCCCAA-T-aatat
gi|14 : ctttgcatgagatctgaagacgacggatagaatgtcacattctgacaatctttccacaaggcaatcagagcatttatttacccgaagA-T-ATAATGTG-GATTATCACGCGTT--T-----T-TTGAGACTAAAA---------------------CATG-----A-----T---A----A-A---C-ATAAATGATTTTCA-------GAAAT-TT--T---AGAAATTGGGGATGATACTGt
gi|17 : ttatagttacatgtagctTAATTGTAACTATGAAAATTCCACAATGGCTG---CGCCCATGTTTTTT-----T---AT---A-C---TTGTAAACGATTTTCACA-----a
gi|18 : AAAAATC--TATATTTAGCT-----G-GGATCCCAA-T-ATCATGTGCGGATATCA--TGTT--TATAA-TGTTACGAagtttgaggaa
gi|19 : agAGATCACAGTGACCGAATCCA--TGTCCA-GG----AAAC-----------AAT--ACTT---------TGTA
gi|2 : AAAAATC--TATAGTTAACC-----A-GGATTCCAA-TTATCATGTGCGATAACCACACATT--TATA-TTATTAAGATTAAAATTCCATAATGGTTA---CACATTTG-----TCTTTTT---A----ATAC--TTGTAAATAATTTTCACA------AGTT-TA------AGATATCAGTAAGGA-ACCTCGACTT-T--TTTTA-----ATCTATACAT----ACATATGAAGACCACTAAGGCTGAATCCA--CACCCA-
gi|2 : agCGAACGGC---TGTTGAAACGAGTACTCTGATTGGTTGAAcattgaaggttatgccgaacggctgttgaaacgagtactctgattggttgaaagaaaaatagctaaaaatagcaatattggaaatcacttattcaagaggaagaatttgaaaaggtcgtcatcagatcttacatttaataagatcaggtactttagtcagattgacatcgacccaaccag
gi|3 : agaaaaatctatagttaaccaggattccaattatcatgtgcgataaccacacatttatattattaagattaaaattccataatggttacacatttgtctttttaatacttgtaaataattttcacaagtttaagatatcagtaaggaacctcgactttttttaatctatacatacatatgaagaccactaaggctgaatccacacccacattgaaggttatgcAAAAT-----TATTTAGCT-----G-GGA---------ATCGTGTG-GATTATCAGGCATT--TAAAATTATTCCACTGAAAATTCCATAACAGCTG---TGCCCATGTT---T-----T---ATT--A-ATACTTGTAAATGATTT----A-----GAAAT-CAAGTTTGAGAAATCAGGTACGATACCGGGATTT-TTATTT-------ACTTATACACCA--ATATACAAAGGTTATAATGGCCAAAACCA--CACCCA-agaaaaatagctaaaaatagcaatattggaaatcacttattcaagaggaagaatttgaaaaggtcgtcatcagatcttacatttaataagatcaggtactttagtcagattgacatcgacccaaccag
gi|4 : atctcattaaaatcatatcctcaagaacgcttccctgtgggatcttgatgatgacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaagTTAGCT-----A-GGGTTCCAA-TTATCAAGTTCGATTATCACACATT--TACAAATATTACGACGAAAATAATATAATGTCTGTAACGCCCATG-----T-----TTTAAT---A-A---CTATA--TTATTTTTACA-------AGT-TT--T---AGAAACCTGGGACGATACGGGGACTT-T--TTTTT-----ATTAATACACTC--ACATAAGAATATCAATATGGCCGAATCCA--CACCCA-cattgaaggtgagatgttatgtaatatgatggttgactgaaataac
gi|5 : AAAAAAC--AATATTGAGCT-----G-GGATCCCAA-T-ATCATGTGCGATTATCACGCGAT--TATAATTATTACGACGAAAA---CATTATGGCTG---CGCCCATG-----T-----T---A----A-A---T-GTAAATAATTTTCATATTATAGAAAT-TA--T---AGAAATCAGGGACGACACCGGGATTT-T--TTT-------ATTTATGCATCA--ACATAGGAAGAGCACTTTCGCCGAATCAA--CGCCCA-GG----AAAC-----------AGC--ACAT---------TGTAAGAATGTATCAATCGGCGTCATGTTTTAAATTTCAACAAACTGCGAATGTA---ACGATTAATCTGATTGGCTGAATTGTTATGAATATTAATTcagttaaagttatgtcgaacgccgttgaaatgagtactctgattggttaaataaaatagctaaaaatagctatattttaaatcaatttagtcaagaaggagaatttgaataggtcgtcttcaaatcttacaattataatgatcttgtactttagtcagattgggaa
gi|6 : AAAGATC--TATATTTAGCTCAGCTG-GGATACCAG-T-ATCATGTGGGATT-TAACAAGTTATTATTATTGATACTACGAAAA---CAATATGGCTG---CACCAATA-----T-----T---A----A-A---T-GAAAATGATTTTC-C------GAAAT-TA--T---TGAAATTAAAGACGATACTGGGACTTCT--TTT-------ATTTATACATCA--ACATA--------ACTATAGCCGAATCAA--TGTCCA-AG----AAAT-----------AAC--ACTT---------TGTAGAAATGCAGCTATCAATGTCACGTTATTAATCTCAACGAACTGCAAATGTT---ATAATTAATCTGATTCGCTGAATTGTTGTGAATATTAAT
gi|7 : aagAAGACTC--TAGATT---CT-----GCAGATCTCGA-T-ATAATGAATGATTTTCATGTGAT--TTTAATTATAATGATGAAAA---CATTGTGACTG---CGCCAATG-----T-----T---A----A-A---T-------GATATTCA-------GAAAT-TA--T---AGAAATCAGAAACGACACAAGGACTT-T--TTTTAAAAAAATTTTAACATCA--ACATAGGAAGATCATTATGGCCGAATCAA--CGCCCA-GG----AAAC-----------AGC--ACTT---------TGTAAGAATGTATCAATCAACATCATGTTGAAAATCTTAATGAACTGCAAATGTT---ATGGTAATTCTGAATGGCTGAATTATTATGAATATCAATaac
gi|8 : AATAATC--TATATTTAGCA-----G-GGATACCAA-T-ATCATGTGCGATTATCATGCGTT---ATAATTGTTATAA---AAA---CATTATGGCTG---TACCCATG-----T-----T---A----A-A---T-ATAAATGATTTTCA-------AAAAT-CA--T---AGAAATCAGGGACGATACTGAGTCTT-T--TTT---------TTATACACCA--ACATAGAAAGATCACTATGGCCAAATCAA--CGCCAA-GG----AAAC-----------AGC--ACTT---------AGTAAGAATGTTTCAATTGACGTCA---TGTAAATCACAATGAATTGCAAATGTT---A--GTCAATCTGATTGGCTGAATTGTTATGAATATTAATTaac
gi|9 : AAAAATC--TATATTTAGCT-----G-GAATTCCAATT-ATCACGTGCAA--AACACATGTT--TATAACTGTCATGATGAAAATTCTATAATaca
blockSeqs : CT CAGCT C C T T T AT T TTC T TAA TCTTTTTAATACTT TATTATAG C AGTTTG C TA TAAAAAA . G GT . TTTA TCTCGATTTTA TT AAAACATCT A G T G GAA C
blockSeqs : . . . C . T C . C TTC A . TTTTATTAATACTT CA . T . . TA . A . . . . . . T A C A . C
blockSeqs : . . . T . . C . T TTC A . TTTTTTTATACTT AG . T . . TT . T . . . . . . A A T A . T
blockSeqs : . . . T . . C . T TAA A . TTTTAATAACT CA . T . . . . C . . . . . . A G . A . T
blockSeqs : . . . C . . C . T TTC A . TTAAAT CG . T . . . . A . . . . . . . . .
blockSeqs : . . . A . . G . C . T . ATAAAC T . T . . . . G . . . . . .
blockSeqs : . . . C . . T . C . T . TTAAAT G . T . . . . G . .
blockSeqs : . . . A . . C . C . T . TTAAAT G . T . . . . G . .
blockSeqs : . . . T . . C . T . T . TTAAAT A . . . . . .
blockSeqs : . . . . . . . T . A . TTAAAT
blockSeqs : . . . . . . .
blockSeqCons : *** TTAAAT********************** T***** ** ***********
originalCons : AAAAATC--TATATTTAGCT-----G-GGATCCCAA-T-ATCATGTGCGATTATCACGCGTT--TATAATTGTTACGACGAAAATTCCATNATGGCTG---CGCCCATG-----T-----T---A----A-A---TTGTAAATGATTTTCACA-----GAAAT-TA--T---AGAAATCAGGGACGATACCGGGACTT-T--TTT-------ATTTATACACCA--ACATAGGAAGATCACTATGGCCGAATCCA--CGCCCA-GG----AAAC-----------AGC--ACTT---------TGTAAGAATGTATCAATCGACGTCATGTTGTAAATCTCAACGAACTGCGAATGTT---ACGATTAATCTGATTGGCTGAATTGTTATGAATATTAATT
finalCons : AAAAATC--TATATTTAGCT-----G-GGATCCCAA-T-ATCATGTGCGATTATCACGCGTT--TATAATTGTTACGACGAAAA---CATNATGGCTG---CGCCCATGTTAAAT----------------------GTAAATGATTTTCACA-----GAAAT-TAT-----AGAAATCAGGGACGATACCGGGACTT-T--TTT-------ATTTATACACCA--ACATAGGAAGATCACTATGGCCGAATCCA--CGCCCA-GG----AAAC-----------AGC--ACTT---------TGTAAGAATGTATCAATCGACGTCATGTTGTAAATCTCAACGAACTGCGAATGTT---ACGATTAATCTGATTGGCTGAATTGTTATGAATATTAATT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): AATCATATCCTCAAAACTACTTTGCTATGGGGTCTGATGACTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGA
Unaligned ( gi|15 ): GCACTTGAGGAATGAGAATTCGAATACTAGATCGTCATCAGATCTTACATTTAGGAAGATCATGTACTTTAGTCAGATTGATACTGGTTAAC
Unaligned ( gi|16 ): AAATCCTGTTGTGAGTAGAAGAGAGCTTGAATAGTTCGTCATCAGATCTTACATTTGGAAGATCGAGTACTTTAGTCAGATTGATCTT
Alignments
lowQualScore : 222 33333333333333333333333333333 222222222 111111 2222222 1111 33333333333 222222222 111
lowQualScore : 55 99999 3 1 3 6 3 44 2 333 666 1 666 22222222222222222222222222222 55 777777777 0 4 333333 4 66 6666666 55 3 0 55 4 2222 22222222222 77 222222222 1 6 3 6 111 3
lowQualScore : .. ..... . . . . . .. . ... ... . ... ............................. .. ......... . . ...... . .. ....... .. . . .. . .... ........... .. ......... . . . . ... .
lowQualScore : 55 11111 6 2 3 7 1 66 2 333 444 0 444 77777777777777777777777777777 00 999999999 1 0 333333 4 11 7777777 55 2 2 55 0 1111 99999999999 99 999999999 4 4 8 3 777 7
consensus : AAAAATC--TATATTTAGCT-----G-GGATCCCAA-T-ATCATGTGCGATTATCACGCGTT--TATAATTGTTACGACGAAAA---CA---TNATGGCTG---CGCCCATG-----T-----T-----A----A-A----TG--TAAATGATTTTCACA-----GAAAT-TA----T-AGAAATCAGGGACGATACCGGGACTT-TT--TT-------ATTTATACACCA--ACATAGGAAGATCACTATGGCCGAATCCA--CGCCCA-GG----AAAC-----------AGC--ACTT---------TGTAAGAATGTATCAATCGACGTCATGTTGTAAATCTCAACGAACTGCGAATGTT---ACGATTAATCTGATTGGCTGAATTGTTATGAATATTAATT
Reference ( family-756 ) : AAAAATC--TATATTTAGCT-----G-GGATCCCAA-T-ATCATGTGCGATTATCACGCGTT--TATAATTGTTACGACGAAAA---CA---TNATGGCTG---CGCCCATG-----T-----T-----A----A-A----TG--TAAATGATTTTCACA-----GAAAT-TA----T-AGAAATCAGGGACGATACCGGGACTT-TT--TT-------ATTTATACACCA--ACATAGGAAGATCACTATGGCCGAATCCA--CGCCCA-GG----AAAC-----------AGC--ACTT---------TGTAAGAATGTATCAATCGACGTCATGTTGTAAATCTCAACGAACTGCGAATGTT---ACGATTAATCTGATTGGCTGAATTGTTATGAATATTAATT
gi|1 : TCATGTGCGATTATCACGCGTC--TATAATTGTTACGACGAAAATTCCA---TAATGACTG---CGCCCATG-----T-----T-----ATTTTA-ATTCTTG--TAAATGATTTTCACA------AGTT-TA------AGAAATCAGGAACGATTCCGGGAC---TT--AA-------ATTCATACACCACTACATTGAAAG----TTAT-GCCG----CA--CGGCTGTGG----AATCG----------AGT--ACTT---------TG
gi|10 : atctcattaaaatatgcttcgctatgggatctggcgacggcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaccggaaaacaatctatagcttcggAAAAATC--TATATTTAGCT-----G-GGATCCCAA-T-ATCATATGTGATTATCACACGAT--TATTATTGTTATGATGAAAA---CA---TTATGGCTG---TGCCCATG-----T-----T-----A----A-A----TG--TAAATGATTTTTGT----------TCTA----T-AGGAATCAGGGATAATACCAGGACTT-TT--TT-------ATCTATACACCA--ACATAGGGAGATCAC--TGGTCGAATattagttgaaataaagaaagctaaaaatagcgatattggaaatccagttattctagaagacattgaatatgtcgtcatcagatcatacctttagggaggacgtgcatttcagttagattgtgaa
gi|11 : a--ACATAAGACGATCACTATGGCCAAATCCAGTTGTTCC-GGTTTAAAACTCTCGATTTTAAACTTACTTAAAACATCTTGTAAAAATGTATCTGTC-ACAACATATTGTAAATTTTAATGACCTTTGAATGTA---TCGATTAATGTGATTAGCTGAATTGTTATGAATATTGAT
gi|13 : AAAATCCTTA-ATTTAGCT-----G-GGATCCCAA-T-aatat
gi|14 : ctttgcatgagatctgaagacgacggatagaatgtcacattctgacaatctttccacaaggcaatcagagcatttatttacccgaagA-T-ATAATGTG-GATTATCACGCGTT--T-----T-TTGAGACTAAAA---CA---TGAT---------------------------------A----A-A----CA--TAAATGATTTTCA-------GAAAT-TT----T-AGAAATTGGGGATGATACTGt
gi|17 : ttatagttacatgtagctTAATTGTAACTATGAAAATTCCA---CAATGGCTG---CGCCCATGTTTTTT-----T-----A----T-ACT--TG--TAAACGATTTTCACA-----a
gi|18 : AAAAATC--TATATTTAGCT-----G-GGATCCCAA-T-ATCATGTGCGGATATCA--TGTT--TATAA-TGTTACGAagtttgaggaa
gi|19 : agAGATCACAGTGACCGAATCCA--TGTCCA-GG----AAAC-----------AAT--ACTT---------TGTA
gi|2 : AAAAATC--TATAGTTAACC-----A-GGATTCCAA-TTATCATGTGCGATAACCACACATT--TATA-TTATTAAGATTAAAATTCCA---TAATGGTTA---CACATTTG-----TCTTTTT-----A----ATACT--TG--TAAATAATTTTCACA------AGTT-TA------AGATATCAGTAAGGA-ACCTCGACTT-TT--TTTA-----ATCTATACAT----ACATATGAAGACCACTAAGGCTGAATCCA--CACCCA-
gi|2 : agCGAACGGC---TGTTGAAACGAGTACTCTGATTGGTTGAAcattgaaggttatgccgaacggctgttgaaacgagtactctgattggttgaaagaaaaatagctaaaaatagcaatattggaaatcacttattcaagaggaagaatttgaaaaggtcgtcatcagatcttacatttaataagatcaggtactttagtcagattgacatcgacccaaccag
gi|3 : agaaaaatctatagttaaccaggattccaattatcatgtgcgataaccacacatttatattattaagattaaaattccataatggttacacatttgtctttttaatacttgtaaataattttcacaagtttaagatatcagtaaggaacctcgactttttttaatctatacatacatatgaagaccactaaggctgaatccacacccacattgaaggttatgcAAAAT-----TATTTAGCT-----G-GGA---------ATCGTGTG-GATTATCAGGCATT--TAAAATTATTCCACTGAAAATTCCA---TAACAGCTG---TGCCCATG-----T-----TTTATTA----ATACT--TG--TAAATGATTT----A-----GAAAT-CAAGTTTGAGAAATCAGGTACGATACCGGGATTT-TTATTT-------ACTTATACACCA--ATATACAAAGGTTATAATGGCCAAAACCA--CACCCA-agaaaaatagctaaaaatagcaatattggaaatcacttattcaagaggaagaatttgaaaaggtcgtcatcagatcttacatttaataagatcaggtactttagtcagattgacatcgacccaaccag
gi|4 : atctcattaaaatcatatcctcaagaacgcttccctgtgggatcttgatgatgacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaagTTAGCT-----A-GGGTTCCAA-TTATCAAGTTCGATTATCACACATT--TACAAATATTACGACGAAAA---TAATATAATGTCTGTAACGCCCATG-----T-----T-----TT---A-A----TAACTATATTATTTTTACA-------AGT-TT----T-AGAAACCTGGGACGATACGGGGACTT-TT--TTTT-----ATTAATACACTC--ACATAAGAATATCAATATGGCCGAATCCA--CACCCA-cattgaaggtgagatgttatgtaatatgatggttgactgaaataac
gi|5 : AAAAAAC--AATATTGAGCT-----G-GGATCCCAA-T-ATCATGTGCGATTATCACGCGAT--TATAATTATTACGACGAAAA---CA---TTATGGCTG---CGCCCATG-----T-----T-----A----A-A----TG--TAAATAATTTTCATATTATAGAAAT-TA----T-AGAAATCAGGGACGACACCGGGATTT-TT--TT-------ATTTATGCATCA--ACATAGGAAGAGCACTTTCGCCGAATCAA--CGCCCA-GG----AAAC-----------AGC--ACAT---------TGTAAGAATGTATCAATCGGCGTCATGTTTTAAATTTCAACAAACTGCGAATGTA---ACGATTAATCTGATTGGCTGAATTGTTATGAATATTAATTcagttaaagttatgtcgaacgccgttgaaatgagtactctgattggttaaataaaatagctaaaaatagctatattttaaatcaatttagtcaagaaggagaatttgaataggtcgtcttcaaatcttacaattataatgatcttgtactttagtcagattgggaa
gi|6 : AAAGATC--TATATTTAGCTCAGCTG-GGATACCAG-T-ATCATGTGGGATT-TAACAAGTTATTATTATTGATACTACGAAAA---CA---ATATGGCTG---CACCAATA-----T-----T-----A----A-A----TG--AAAATGATTTTC-C------GAAAT-TA----T-TGAAATTAAAGACGATACTGGGACTTCTT--TT-------ATTTATACATCA--ACATA--------ACTATAGCCGAATCAA--TGTCCA-AG----AAAT-----------AAC--ACTT---------TGTAGAAATGCAGCTATCAATGTCACGTTATTAATCTCAACGAACTGCAAATGTT---ATAATTAATCTGATTCGCTGAATTGTTGTGAATATTAAT
gi|7 : aagAAGACTC--TAGATT---CT-----GCAGATCTCGA-T-ATAATGAATGATTTTCATGTGAT--TTTAATTATAATGATGAAAA---CA---TTGTGACTG---CGCCAATG-----T-----T-----A----A-A----TG-----AT-ATT----CA-----GAAAT-TA----T-AGAAATCAGAAACGACACAAGGACTT-TT--TTTAAAAAAATTTTAACATCA--ACATAGGAAGATCATTATGGCCGAATCAA--CGCCCA-GG----AAAC-----------AGC--ACTT---------TGTAAGAATGTATCAATCAACATCATGTTGAAAATCTTAATGAACTGCAAATGTT---ATGGTAATTCTGAATGGCTGAATTATTATGAATATCAATaac
gi|8 : AATAATC--TATATTTAGCA-----G-GGATACCAA-T-ATCATGTGCGATTATCATGCGTT---ATAATTGTTATAA---AAA---CA---TTATGGCTG---TACCCATG-----T-----T-----A----A-A----TA--TAAATGATTTTCA-------AAAAT-CA----T-AGAAATCAGGGACGATACTGAGTCTT-TT--TT---------TTATACACCA--ACATAGAAAGATCACTATGGCCAAATCAA--CGCCAA-GG----AAAC-----------AGC--ACTT---------AGTAAGAATGTTTCAATTGACGTCA---TGTAAATCACAATGAATTGCAAATGTT---A--GTCAATCTGATTGGCTGAATTGTTATGAATATTAATTaac
gi|9 : AAAAATC--TATATTTAGCT-----G-GAATTCCAATT-ATCACGTGCAA--AACACATGTT--TATAACTGTCATGATGAAAA---aca
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): AATCATATCCTCAAAACTACTTTGCTATGGGGTCTGATGACTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGA
Unaligned ( gi|15 ): GCACTTGAGGAATGAGAATTCGAATACTAGATCGTCATCAGATCTTACATTTAGGAAGATCATGTACTTTAGTCAGATTGATACTGGTTAAC
Unaligned ( gi|16 ): AAATCCTGTTGTGAGTAGAAGAGAGCTTGAATAGTTCGTCATCAGATCTTACATTTGGAAGATCGAGTACTTTAGTCAGATTGATCTT