lowQualScore : 111111111111111111111111111111111111111111111111111111111111 22222222222222222222222222222222222222222222222222222222222
lowQualScore : 11111 11 111111 999999999999999999999999999999999999999999999 222222222 11111111111 111111111 1111 77777777777777777777777777777777777777777 111111111111111 1 1111111 444444444444444444444444444444444444444444444444444444444444 1111111111 1 1111 55555555555555555555555555 222222 1 1 333333333333333 1 00000000000000000000000000000000000000000000000000000000000 11
lowQualScore : 777 1 666 22222 11 3 3 555555 777777777 0 1 111111 2 8888 2 44 666666666666666666666666666666666666666666666 8 555555 1 777777777 22 1 222 222 2 1 8 44444444444 1 2222 1 333333333 33333 444444 555555 111 333333 111 2 111 333333 111 111 1 1111 444444444 444444 88888888888 222 222 1 2 777777777777 1 77777777777777777777777777777777777777777 222 555555 444444 444444 555555555555555 1 7777777 444 444 222222222222222222222222222222222222222222222222222222222222 0 55555 7777777777 777 666666 1 0 2 6666 3 2 4444 0 5 44444444444444444444444444 7 3 8 888888 0 2 1 888888888888888 4 7 6 99999999999999999999999999999999999999999999999999999999999 66
lowQualScore : ... . ... ..... .. . . ...... ......... . . ...... . .... . .. ............................................. . ...... . ......... .. . ... ... . . . ........... . .... . ......... ..... ...... ...... ... ...... ... . ... ...... ... ... . .... ......... ...... ........... ... ... . . ............ . ......................................... ... ...... ...... ...... ............... . ....... ... ... ............................................................ . ..... .......... ... ...... . . . .... . . .... . . .......................... . . . ...... . . . ............... . . . ........................................................... ..
lowQualScore : 000 7 999 66666 11 8 0 000000 000000000 2 4 777777 2 2222 9 22 000000000000000000000000000000000000000000000 2 555555 9 666666666 22 6 777 555 8 3 6 55555555555 3 7777 3 222222222 33333 222222 000000 999 777777 999 4 999 333333 999 999 2 1111 777777777 444444 55555555555 111 111 3 0 999999999999 7 99999999999999999999999999999999999999999 444 999999 000000 111111 222222222222222 2 6666666 111 777 555555555555555555555555555555555555555555555555555555555555 6 11111 4444444444 444 888888 6 5 3 7777 3 2 7777 3 8 55555555555555555555555555 0 5 0 888888 5 7 0 777777777777777 0 0 0 11111111111111111111111111111111111111111111111111111111111 55
consensus : AGCAGTAG---CAGCAGCAGTAG---TANTAGNAGTAGNAGTAGTAGTAGCAGCAGC------A---------GCAGCAGTAGTAGT-----NGTAGT-AT---T-GG--TNGCGGCGGNAGTAGTAGTAGNAGNAGNAGNN---------CGTAGTAGTAGTAG------TA-GTAG------TANTAGC--A-G---CAG---CAGTAG-TAGNAGTAGT-N--------GT-A----GTAG-TA-G---T---AG-----T--A--GCAGCAGCA------GCA---G--C---AGC-AGTAAT---AG------TAGTAGTAG---TA---GTAGTAG---TAGTAG---------TAG------TAGT----A--GCA---GCAG---TAGCA-GCAGC------A-G-T-AGT----N-C-----T---G-AGTAGNAGTAGT-GT-----G-CAGCAGCAG---CAG------CAG------CAGT------AGT---------------AGTAGTNGTAGTA--GCAGCAGCAGC---AGC---AGCAGCAATAGTAGTATNAGTAGNAGTAGCAGTAGCAGTAGTANNAGCAGTAGTAANCGCCTGACGG-TAGCAGCAGCAGCAGCAGCAGCAGTAGTAGT---N------GT---AGTAG------TAGNAGTAGTAGTAGTGGT---AGTNGTAGTAN---TAGTNG---------------------TAANGTACGTTTACNT-TCGTTG------CCCCGAAATATTANAAATACCTACCTTTT-CAGA-AAAA----AATGGCGAAAATGTTAAT------------------A------------------A-------CGA-----------TTACATGCCGGAACAGTATGT
Reference ( gi|6 ) : AGCAGTAG---CAGCAGCAATAG---TACTAGAAGTAAAAGTAGTGGTAACAGCAGC------A---------GCAGCAATAGTAGT-----TGTAGT-AT---T-GA--TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------CGTACTAGTTGTAG------TA-GTAG------TTTTAGC--A-G---CAG---CAATAG-TAGAAGTAGT-T--------AT-A----GTAG-TA-T---T---AG-----T--A--ACAGCAGCA------GCA---G--C---AAC-AGTAAT---AG------TAGTAGTAG---TA---GTAATAT---TAGTAG---------TAG------TATT----A--ACA---GCAG---TAGCA-GCAAC------A-A-T-AGT----T-C-----TG--GAAGTAGAAATAGTCGT----TA-CAGCAGCAG---CAG------CAG------CAGT------AGT---------------AGTAGTTGTATTA--ACAGCAGCAGC---AGC---AGCAGCAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAACAGCAGCAGCAGCAGCAACAACAGTAGT---T------GT---AGTAA------TAGAAATAGTAATAGTGGT---AGTTGTGGTAT---TAGTTG---------------------TAAAGTATGTTTACTT-TCGTTG------CCCCAATATATTATAAATACCTATCTTTT-CAGA-AAGA----AATGGCAAAAAAGCTAAT------------------A------------------A-------CGA-----------TTACATGCCGGAATTGTATGT
gi|7 : AGTAGTAGGAACAATAACAGTAG---TATAAAAAGCAATAGTAGTATTAGCAGCAAC------AACACCTTGGGCAGCAATA-TAAT-----TATA
gi|18 : tgcgcagtaatacttttataagttgtaaaaaatagagttacagtggtagagatagtgaaacagctgcagcataagtggtagtaatggtgtagtagtagtagtaagtagtataggaaaagaagaagaaaagatagttgttgttgtggtgtaaataatagtataAGCAGCAG---CAGCAGAAGTAG---T------AGT---AGTAGTAGTAGCAGCAGC------A---------GCAGCAaatataagtagcaattattgtcgtatcagaagcaatgagtgcctgacggacagcgaaagcgacagcagctgattctacagtgacagtttgtaaaagtggcagtg
gi|17 : AACAGCAG---CAGTAGTATTAG---TAGCAGTAGTAGAAGTAGTGGTggaacatcaatcatatagaaccatcatataactattaacatatcataaa
gi|20 : tagcAGTAGTAG---TAGTAGTAGTGG---TGGTGGTGGTTA---TGGTGGTAGTAGTGGT------A---------ATAATAATAGTAGC-----AGTAGC-AT---ggtggtcgttgtggtggtggtggtggaacgttaactgtctttgtaattcctctgatatat
gi|14 : tAGTAATAG---CAGCAGCAGCAG---TA------GTA---GTTGTAGTAATTGCAGC------A---------GCAGcagcagcagcggtag
gi|12 : agaaatggtgtttgtggtgatagtagtagaagacttctactgctgctgctgctacaactactacttgaagtggtAGCAGTTA---TATCAGCAATAG---CAGTAGCATCAGCAGCAGTAGCAAAAGCAGT------A---------TCAGT-ATAGaa
gi|15 : ggtagataagttttgtactgttcttaaaatagacattggaagtaatagtagtagcagtgatagtggtggtggtggttgtattgatgttggtggtAGCAGTGG---TAGTAGCAGCAG---TACTAGTAGTAACTGTAGCAAAATCAGTAGC------A---------ATAGCAATAag
gi|11 : cagcatgagttgtttttacataagttataatGTAG---TAGCAGTAGTGT---TGTTAGAAGAAGTAGTAGTAGTAGCAGCAGC------A---------GCAGTAGCAGTAAT-----AGTAGT-ATTAGT-AG--TAGCAGCAGAAGCAGTAGCAATAGCAATAGCAAC-------CACAACAGCAGCAG------CA-GTAG---------TAGT--A-A---TAG---CAGTAG-TAGTAGTCGT-A--------AT-A----TTAA-AA-G---T---AG-----C--A--ACAGCAGCA------GCA---G--tcggtgctgctacagcagtagtaata
gi|9 : agttgtattatcattattataagtagtagcaaggacttgtctatataattccttgTAT---CAGCAGTGGTCG---TAATAGAAGTTGTAGTAGTGGTGAAGGTGGT------G---------GTGGTAGTAGTAGTA----TGT
gi|10 : G---CAGCAGCAGTAG---TACAAGTAGTAGAACCAGTAGTAGAAGCAGCAGCAACA---------GCAGTAATAGTAGT-----TGTAGT-AC---TAGAAGTTTCTTCAGCAGCAGCAGTAGCAGAAGGAGAATG-------CGCAGTAGCAGCAG------TA-GTAGCAA---CAGTAGT--A-G---CAG---CAGTAC-TAGAAGTAG-----------A--A----GTTG--------T---AG-----T--A--GCAGCAGCA------GCA---A--C---AAgtttttagtttacgtatcgtagtagaagtagtcgtggcagttacagcaatagcggttgttgtaatagaatctaatgccctttaaatattttgcctcaaagtaaacatcgcaattaatgtatgtttatttttgttgccccagaatataacgaatacctatcttttcagataaaaaatggcaaaaatgttaataagccactcagtgttttaaacgattacatgccggaactgcatgtc
gi|13 : CAGCGATAG---TAGTAAAAGTAGTAGTAGTAATAATAGCAGC------A---------GCAGCAGTAGAA--------ACAGT-AT---T-AG--TCATGCTGGTAGTATTAGTCGTATTAGTAGTTCT-------CACATTAGTAGTCG------CA-GTGG---------TATC--A-G---TGG---TAATAC-TAATAATGAC-T--------AT-A----nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagcagcagccgtattactaggagtagtaccagt
gi|16 : tCAACAATAA---CAATAACAATAACAACAGCAACAACAACAGC------A---------ATAATAATAGTA--------GCAAT-AT---T-AA--Tct
gi|19 : CGGTAGTAG---TAGTGGTAGTAGAAGGAGTAGCAGCAGCAGC------A---------GCAGCAACAatcaaaaatattaacaattgtaagataattataataccaataatagcaacaa
gi|7 : tatactgtcattgttatatattacttttgtggaaaattatataAATAGAGTTAC-AGTGGTAGAGATAGTGA-AACAGCTGC------A---------GCATAAGTGGTAGTAATGGTGTAGT-AG---T-AG--TAGTAAGTAGTATAGGAAAAGAAGAAGAAAAGAT-------AGTTGTTGTTGTGGTGTAAATA-ATAG------TATAAGT--A-G---TAG---GAACAA-TAACAGTAGTATAAAAAGCAAT-A----GTAG-TA-T---T---AG-----C--A--GCAACAACACCTTGGGCA---G--C---AAT-A-TAAT-----------TA-TA--------------AATAT---AAGTAG---------CAAT-----TATT-------------GTCG---TATCA-GAAGC------A-A-TGAGT----G-C-----CT--GACG----GACAG-CG------A-AAGCGACAG---CAG------CTGATTCTACAGT------GAC---------------AGT--TTGTA--A--A-AGTGGCAG
gi|12 : tgcgcagtaatacttttataagttgtaaaaAATAGA--CATTGGAAGTAATAGTAGT------AGCAGT------G---------ATAGTGGTGGTGGT-----GGTTGT-AT---T-GA--TGTTGGTGGTAGCAGTTA-------------------------TATCAGCAATAG------CA-GTAG---------CATC--A-G---CAG---CAGTAG-CAAAAGCAG--T--------ATCA----GTAtg
gi|8 : ggtagataagttttgtactgttcttaaAG---TAGTAGCAGTAGAAATAGTAGTATCATAAGT------A---------GCAGCA---GTAGA-----TGTAGT-TA---T-GA--TAAAAGTGGGAGTAGTAGTAATAACAGCAGTAGC-------CAAAGCAGTAGCAG------TA-GTAG------TATCAGA--A-G---CAGTATCAGTAG-CAACAGTAGA-T--------GC-A----GTGG-TA-A---T---AG-----T-------AGTAGCA------GTA---G--C---AAC-AGCAAT---AT------CCATAGTAA---AA---GTAATATGTGTAGTAG---------CAG------TAtagag
gi|12 : tactcttaattaaaatattatggtataatcaccattataatcaatatattactgttattgttattatatactattattgttatgtttagtattatcattatatttattattacaAGCAATAGCAGTAGCATCAGCAGC------A---------GTAGCAAAAGCAGT-----ATCAGT-AT---A-GA--
gi|15 : ggtagataagttttgtactgttcttaaaatagacattggaagtaatagtagtagcagtgatagtggtggtggtggttgtattgatgttggtggtagcagttatatcTAATAGCAGTGGTAGTAGCAGC------A---------GTACTAGTAGTAAC-----TGTAGC-Ag
gi|14 : cagcatgagttgtttttacataagttaAAGTGGTAGTAATAGCAGC------A---------GCAGCAGTAGTAGT-----TGTAGTAAT---T-Gaaatcagtagcaatagcaatatcggtgctgctacagcagtagtaata
gi|14 : agaaatggtgtttgtggtgatagtagtagaagacttctactgctgctgctgctacaactactacttgAAGTAGTAGTTGTAGCAGC------A---------GCAGCAGTAGAAGT-----cagcagcagaa
gi|17 : agaaatggtgtttgtggtgatagtagtagaagTAGCAACAGCAGC------A---------GTAGTATTAGTAGC-----AGTAGT-Agaagtggtagtaatagcagcagcagcagtagtagttgtagtaattgcagcagcagaa
gi|9 : TATCAGCAGT------G---------GTCGTAATAGAAGT-----TGTAGT-AG---T-GG--TGAAGGTGGTGGTGGTAGTAGTAGTATGTGTTTTTAGTTTACGTA-TCGTAGTAG------AA-GTAG------TCGTGGC--A-GTTACAG---CAATAG-C---GGTTGT-T--------GT-A----ATAG-AA-T---gaagtagtggtggtggtcgttgtggtggtggtggtggaacgttaactgtctttgtaattcctctgatatat
gi|18 : AGCAGCAGC------A---------GCAGAAGTAGTAGT-----AGTAGT-Actaatgccctttaaatattttgcctcaaagtaaacatcgcaattaatgtatgtttatttttgttgccccagaatataacgaatacctatcttttcagataaaaaatggcaaaaatgttaataagccactcagtgttttaaacgattacatgccggaactgcatgtc
gi|10 : GC------A---------GCAGCAGTAGTACA-----AGTAGT-A------GA--ACCAGTAGTAGAAGCAGCAGCAACAGCAGTAA-----------TAGTAGTTGTAG------TA-CTAGAAGTTTCTTCAGC--A-G---CAG---CAGTAG-CAGAAGGAG--------------A----AT-G-CG-----C---AG-----T--A--GCAGCAGTA------GTA---G--C---AAC-AGTAGT---AG------CAGCAGTAC---TA---GAAG------TAGAAG---------TTG------TAGT----A--GCA---GCAG---CAGCA-ACAAN------N-N-N-NNN----N-N-----NN--NNNNNNNNNNNNNNNNN----NN-NNNNNNNNN---NNN------NNN------NNNN------NNN---------------NNNNNNNNNNNNN--NNNNNNNNNNC---AGC---AGCAGCgtagcagcagcagcagcaggaacatcaatcatatagaaccatcatataactattaacatatcataaa
gi|14 : AGAAATGGTGTT-----TGTGGT-GA---T-AG--TAGTAGAAGACTTCTACTGCTGCTGCTGCTACAA-------C-TACTACTTGAAG------TG-GTAG------TAATAGC--A-G---CAG---CAGCAG-TAG---TAGT-T--------GT-A----GTA---A-T---T-------------------GCAGCA------GCA---G--cgtattactaggagtagtaccagt
gi|20 : AGTAGTAGT-----AGTAGT-AG---T-GG--TGGTGGTGGTTATGGTGGTAGTAGTGGTAA-------------TAATAATAGTAG------CA-GTAG------CATCAGC--A-G---CAG---CGGTAG-aa
gi|11 : tTAGTAGC-----AGTAGT-GT---T-GT--TAGAAGAAGTAGTAGTAGTAGCAGCAGCA-------------GCAGTAGCAGTAA------TA-GTAG------TATTAGT--A-G---TAG---CAGCAG-AAGCAGTAGC-A--------AT-A----GCAA-TA-G---C---AA-----C--C--ACAACAGCA------GCA---G--CAGTAGT-AGTAAT---AG------CAGTAGTAG---TAGTCGTAATAT---TAAAAG---------TAG---------C----A--ACA---GCAG---CAGCA-G
gi|19 : agttgtattatcattattataagtagtagcaaggacttgtctatataattccttggGTAGTAGTGGTAG------TA-GAAG------GAGTAGC--A-G---CAG---CAGCAG-CAG
gi|20 : tatactgtcattgttatatattacttttgtggaaaattatatacggtaTAGTAGTAGTAG------TA-GTAG------TGGTGGT--G-G---TGG---TTATGG-TGGTAGTAGT-G--------GT-A----ATAA-TA-A---T---AG-----T--A--GCAGTAGCA------TCA---G--C---AGC-AGCGGT---AG------caaca
gi|14 : TACCACTTCAAG------TA-GTAG------TTGTAGC--A-G---CAG---CAGCAG-TAGAAGT
gi|9 : agaaatggtgtttgtggtgatagtagtagaagTAGTAGTAG------TATGTGT------TTTTAGTTTACG---TAT---CG-TAG-TAGAAGTAGT-C--------GT-G----GCAG-T--T--------------------ACAGCAATA------GCG---G--T---TGT-TGTAAT---AG------gtaatagcagcagcagcagtagtagttgtagtaattgcagcagcagaa
gi|18 : tatcagcagtggtcgtaatagaagttgtagtagtggtgaaggtggtggtggAGTAGTAG------TA-GTAG------TAGTAGC--A-G---CAG---CAGCAG-CAGGAaatctaatgccctttaaatattttgcctcaaagtaaacatcgcaattaatgtatgtttatttttgttgccccagaatataacgaatacctatcttttcagataaaaaatggcaaaaatgttaataagccactcagtgttttaaacgattacatgccggaactgcatgtc
gi|15 : agcagcagcagcagaAGTTATAA------TA-GCAG------TGGTAGT--A-G---CAG---CAGTAC-TAGTAGTAAC-T--------GT-A----GCAA-AA-T---C---AG-----T-------AGCAATA------GCA---A--T---ATC-GGTGCT---GC------TA-CAGCAG---TA---GTAATAacatcaatcatatagaaccatcatataactattaacatatcataaa
gi|21 : cagcatgagttgtttttacataGTTGTCG------TC-ATAG------TAATAGT--A-G---TAG---TAATAG-TAGAAGCAGT-
gi|7 : gtagtagaagcagtcaccgtcGCAG------TA-ATAC------TTTTATA--A-G---TTG---TAAAAAATAGA----GT-T--------AC-A----GTGG-TA-GAGAT---AG-----TGAA--ACAGCTGCA------GCATAAG--T---GGT-AGTAAT---GG------T-GTAGTAG---TA---GTAGTA-----AGTAG---------TA----------T----A--GGA---AAAG---AAGAA-GAAAA------G-A-T-AGT----TGT-----TGTTGTGGTGTAAATAATAGTA---TA--AGTAGTAGGAACAA------TAA------CAGT------AGTATAAAAAGC------AATAGTAGTATTA--GCAGCAACAAC---ACCTTGGGCAGCAATATAATTATAAATATAAGTAGCAATTATTGTCGTATCAGAAGCAATGAGTGCCTGACGG---ACAGCGAAAGCGACAGCAGC-----TGAT---T------CTAC-AGTGA------CAG--TTTGTAAAAGTGGC---AGTag
gi|17 : tgcGCAG------CA-GTAG------TATTAGT--A-G---CAG------TAG-TAGAAGTAGT-G--------GT-G----GTGG-Tg
gi|12 : tagcaacaAG------TA-ATAG------T---AGT--A-G---CAG---TGATAG-TGG---TGGT-G--------GT-G----GTTG-TA-T---T---GA-----T--G--TTGGTGGTA------GCA---G------------TTAT---AT------CAGCAATAG---CA---GTAGCAT---CAGCAG---------CAG------TAGC----A--AAA---GCAG---TATCA-GTAcgttgtggtggtggtggtggaacgttaactgtctttgtaattcctctgatatat
gi|11 : ggtagataagttttgtactgttcttaaaatagacattggaTTGGT--A-G---TAG---CAGTAG-T----GTTGT-T--------AG-AAGAAGTAG-TA-G---T---AG-----T--A--GCAGCAGCA------GCA---G--T---AGC-AGTAAT---AG------TAGTATTAG---TA---GTAGCAG---CAGAAG---------CAG------TAGC----A--ATA---GCAA---TAGCA-ACCAC------A-A-C-AGC------------------AGCAGCAGTAGT--------------AGTAA---TAG------CAG------TAGT------AGT---------------AGTCGTAATATTA--AAAGTAGCAAC---AGC---AGCAGCAtagag
gi|10 : agttgtattatcattattataagtagtagcaaggacttgtctatataattccGC--A-G---CAG---CAGTAG-TACAAGTAGT-------------A----GAAC-CA-G---T---AG-----T--A--GAAGCAGCA------GCA---A--C---AGC-AGTAAT---AG------TAGTTGTAG------------TAC---TAGAAG---------T-T------TCTTCAGCA--GCA---GCAG---TAGCA-G-AAG------G-A-G-AAT----G-C---------GCAGTAGCAGCAGTAGT----AG-CAACAGTAG---TAG------CAG------CAGTACTAGAAGT---------------AGAAGTTGTAGTA--GCAGCAGCAGC---AAC---AANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCAGCAGC---------------C------GT---ATTAC------TAGGAGTAGTACCAGTg
gi|13 : C--A-G---CGA---TAGTAG-TAAAAGTAGT-A--------GT-A----GTAA-TA-A---T---AG-----C--A--GCAGCAGCA------GTA---G--A---AAC-AGTATT---AGTCATGCTGGTAGTAT---TA---GTCGTAT---TAGTAGTTCTCACATTAG------TAGT----C--GCA---GTGG---TATCA-GTGGT------A-A-T-A
gi|18 : t--A-G---CAG---CAGCAG-CAGAAGTAGT-A--------GT-A----GTAG-TA-G---T---AG-----C--A--GCAGCAGCA------GCA---G--G---AAC-ATCAAT---ctaataatgactatact
gi|13 : ---CAG---CGATAG-TAG---TA------------AA-A----GTAG-TA-G---T---AG-----T--A--ATAATAGCA------GCA---G--C---AGC-AGTA------G------AAACAGTAT---TA---GTCATGC---TGGTAG---------TA---------TT----A--GTC---GTAT---TAG------------------T-AGT----T-C-----TC--ACATTAG---TAGTCG--------CAGTGGTAT---CAG------TGG------TAAT------ACT---------------AATAATcatatagaaccatcatataactattaacatatcataaa
gi|17 : tAG---CAACAG-CAG------------------C-A----GTAG-TA-T---T---AG-----T--A--GCAGTAGTA------GAA---G--T---AGT-GGTGGT---GG------TCGTTGTGG---TG---GTgactatact
gi|20 : tAG---TAGTAG-TAGTAGTAGT-G--------GT-G----GTGG-TGGT---T---A------T--G--GTGGTAGTA------GTG---G--T---AAT-AATAAT---AG------TAGCAGTAG---CA---TCAGCAG---CAGCGG---------TAG------ggtggtggaacgttaactgtctttgtaattcctctgatatat
gi|8 : tAGTAG-TAGCAGTAGA-A--------AT-A----GTAG-TA-T---CATAAG-----T--A--GCAGCAGTAGAT---GTA---G--T---TAT-GATAAA---AG------TGGGAGTAG---TA---GTAATAA---CAGCAG---------TAG--------CC----A--A-A---GCAG---TAGCA-GTAGT------A-G-T-A------T-C------A--GAAGCAGTATCAGT-----------AGCAACAG---TAG------ATG------CAGT------GGT---------------AATAGT-----------AGTAGCAGT---AGC---AACAGCAA
gi|21 : tactcttaattaaaatattatggtataatcaccattataatcaatatattactgttattgttattatatactattattgttatgtttagtattatcattatatttattattacaTAG-TAGAAGCAGT-C--------AC-C----GTCG-TT-G---T---CG-----T--C--ATAGTAATA------GTA---G--------T-AGTAAT---AG------TAGAAGCAG---TA---Gtatccatagtaaaagtaatatgtgtagtagcagta
gi|19 : gG-TAGTAGTAGT-G--------GT-A----GTAG-AA-G---G---AG-----T--A--GCAGCAGCA------GCA---G--C---AGC-A
gi|14 : tatactgtcattgttatatattacttttgtggaaaattatatacgGTGGT-G--------AT-A----GTAG-TA-G---A---AGACTTCT--ACTGCTGCTGCT------GCT---A--C---AACTACTACTTGAAG------TGGTAGTAA---TA---GCAGCAG---CAGCAG---------TAG------TAGT----T--GTA---GTAA---TTGCA-GCAGC------A-aca
gi|12 : agaaatggtgtttT-T--------AA-A----ATAGACA-T---TGGAAG-----T--A--ATAGTAGTA------GCA---G--T---GAT-AGTGGT---GG------TGGTGGTTG---TA---TTGATGT---TGGTGG---------TAGCAGTTATATC----A--GCAATAGCAG---TAGCA-TCAGC------A-G-C-AGT----gaa
gi|16 : ggtagataagttttgtactgttc--------AT-A----ACAA-TA-A---C---AA-----T--A--ACAACAGCA------ACA---A--C---AAC-AGCAAT---AA------TAATAGTAG---CA---ATATTAA---TATCAA---------AAA------TATT----A--ACA---agcaaaagcagtatcagtatagag
gi|19 : caacaT-A----GTAG-TA-G---T---GG-----T--A--GTAGAAGGA------GTA---G--C---AGC-AGCAGC---AG------CAGCAattgtaagataattataataccaataatagcaacaa
gi|14 : tatactgtcattgttatatattacttttgtggaaaattatatacgg-A----GTAG-TA-G---T---TG-----T--A--GCAGCAGCA------GCA---G--T---AGA-AGTaca
gi|20 : agaaatggtgtttgtggtgatagtagtagaagTAG-TA-G---T---AG-----T--A--GTAGTAGTG------GTG---G--T---GGT-GGTTAT---GG------TGGTAGTAG---TG---GTAATAA---TAATAG---------TAG------CAGT----A--GCA---TCAG---CAGCA-GCtgaagtggtagtaatagcagcagcagcagtagtagttgtagtaattgcagcagcagaa
gi|14 : AG-TG-G---T---AG-----T--A--ATAGCAGCA------GCA---G--C---AGT-AGTAGT---TG------TAGTAATTG---CA---GCAggtag
gi|15 : agaaatggtgtttgtggtgatagtagtagaagacttctactgctgctgctgctacaactactacttga---T---AA-----T--A--GCAGTGGTA------GTA---G--C---AGC-AGTACT---AG------TAGTAACTG---TA---GCAAAAT---CAGTAG---------CAA------TAGC----A--ATA---TCGG---T-GCT-GCTAC------A-G-C-AGT----gcagaa
gi|23 : cagcatgagttgtttttacataagtta--A--ACAGCAGAA------GTA---GGAT---AGC-AGTAGT---AG------TAGTGGTGG---TG---GTGGTGG---TGGTGG---------TAG------TAagtaata
gi|18 : tatcAGCAGCA------GCA---G--C---AGA-AGTAGT---AG------TAGTAGTAG---TA---GCAGCAG---CAGCAG---------CAG------
gi|17 : AGCAACA------GCA---G--C---AGT-AGTATT---AG------TAGCAGTAG---TA---GAAGTAG---TGGTGG---------TGG------Tgaacatcaatcatatagaaccatcatataactattaacatatcataaa
gi|21 : tAGTAGAA------GCA---G--T---CAC-CGTC------G------TTGTCGTCA---TA---GTAATAG---TAGTAG---------TAA------TAGT----A--GAA---GCAG---TAGcgttgtggtggtggtggtggaacgttaactgtctttgtaattcctctgatatat
gi|18 : gtAGCA------GCA---G--C---AGC-AGAAGT---AG------TAGTAGTAG---TA---GTAGCAG---CAGCAG---------CAG------CAGG----A--ACA---TCAA---T
gi|9 : CA------GCA---G--T---GGT-CGTAAT---AG------AAGTTGTAG---TA---GTGGTGA---AGGTGG---------TGG------TGGT---------A---GTAG---TAGTATGTGTT------T-T-T-AGT----T-TACGTATC--GTAGTAGAAGTAGTCGT----GG-CAGTTACAG---CAA------TAG------CGGT------TGT---------------TGTAATcatatagaaccatcatataactattaacatatcataaa
gi|23 : tatCA------ACA---G--C---AGA-AGTAGG---A-------TAGCAGTAG---TA---GTAGTGG---TGGTGG---------TGG------TGGT----G--GTG---GTAG---TAagaatctaatgccctttaaatattttgcctcaaagtaaacatcgcaattaatgtatgtttatttttgttgccccagaatataacgaatacctatcttttcagataaaaaatggcaaaaatgttaataagccactcagtgttttaaacgattacatgccggaactgcatgtc
gi|14 : tat-AGTGGT---AG------TAATAGCAG---CA---GCAGCAG---TAGTAG---------TTG------TAGT----A--ATT---GCAG---CAGCA-G
gi|12 : agaaatggtgtttgtggtgatagtagtagaagacttctactgctgctgctgctacaactactacttga-AGTAAT---AG------TAGTAGCAGTGATA---GTGGTGG---TGGTGG---------TTG------TATT----G--ATG---TTGG---TGGTA-GCAGT------T-A-T-A------T-C-----AG--CAA-TAGCAGTAG-CAT----CAGCAGCAGTAG---CAA------AAG------CAGT------ATC---------------AGTAaa
gi|17 : ggtagataagttttgtactgttcttaaaatagacattggaT---AG------CAACAGCAG---CA---GTAGTAT---TAGTAG---------CAG------TAGT----A--GAA---GTAG---TGGtagag
gi|20 : T---AG------TAGTAGTAG---TA---GTAGTGG---TGGTGG---------TGG------TTAT----G--GTG---GTAG---TAGTG-GTAAT------A-A-T-AAT------------------AGTAG---CAGT-----------AGCATCAG---CAG------CAG------CGGT------AGtggtggtcgttgtggtggtggtggtggaacgttaactgtctttgtaattcctctgatatat
gi|19 : GTAGTAG---TA---GTGGTAG---TAGAAG---------GAG------TAGC----A--GCA---GCAG---CAGCA-GCAAC------A-
gi|8 : tatactgtcattgttatatattacttttgtggaaaattatatacgTAG---TA---TTATCAT---TA-TAT---------T--------TATT----ATTACA-----AG---TAGTA-GCA------------------------------------GTAGAAATAGTAGTATCATA--AGTAGCAG---CAG------TAG------ATGT------AGTTATGATAAAAGTGGGAGTAGTAGTAATA--ACAGCAGTAGCCAAAGC---AGTAGCAGTAGTAGTATCAGAAGCAGTATCAGTAGCAACAGTAGATGCAGTGGTAATAG---------TAGTAGCAGTAGCAACAGCAATATCCATAGT---A------AA---AGTAA------TATGTGTAGTAGCAGT
gi|14 : tactcttaattaaaatattatggtataatcaccattataatcaatatattactgttattgttattatatactattattgttatgttG---TG---GTGATAG---TAGTAG---------AAG------ACTT----CT-ACT---GCTG---CTGCT-GCTAC------A-ACT-ACT----A-C-----TT--GAAGTGGTAGTAAT-----------AGCAGCAG---CAG------C------------------AGT---------------AGTAGTTGTAGTA--ATTGCAGCAGC---AGa
gi|17 : agaaatggtgttt---TA---GCAACAG---CAGCAG---------TAG------TATT----A--GTA---GCAG---TAGTA-GAAGT------A-G-T-GGT----aa
gi|15 : A---GTTATAA---TAGCAG---------TGG------TAGT----A--GCA---GCAGTACTAGTA-GTAAC------T-G-T-AGCAAAAT-C-----------AGTAGCAATAG-CAA----TATCGGT-GCTG---CTA------CAG------CAGT------AGT---------------AATAggtggtcgttgtggtggtggtggtggaacgttaactgtctttgtaattcctctgatatat
gi|14 : cagcatgagttgtttttacataAGTAG---------TAG------TTGT----A--GCA---GCAG---CAGCA-GTA
gi|11 : agaaatggtgtttgtggtgatagtagtagaagacttc------TATT----A--TAA---GTAG---TAGCA-AGGACTTGTCTATA-T-AAT----T-CCT---TG--GTAGTAGCAGTAGT-GT----TG-T-----TAG---AAG------AAG------TAGT------AGT---------------AGTAG-----------CAGCAGCAGC---AGT---AGCAGTAATAGTAGTATTAGTAGTAGCAGCAGAAGCAGTAGCAATAGCAATAGCAACCAC---------AACAGCAGCAGCAGTAGTAGTAATAGCAGT---A------GT---AGTAG------TCGTAATATTAAAAGTAGC---Atgaagtggtagtaatagcagcagcagcagtagtagttgtagtaattgcagcagcagaa
gi|12 : agttgtattatcatT----A--ATA---GTAG---TAGCA-GTGAT------A-G-T-GGT----G-G-----TG--GTGGTTGTATTGAT-GT----T---GGTGGTAG---CAGTTATATCAG------CAAT------AGC---------------AGTA---GCATCA--GCAGCAGTAGC---AAA---AGCAGTAacagcagcagcag
gi|15 : ggtagataagttttgtactgttcttaaaatagacattggaagT----A--ATA---GCAG---TGGTA-GTAGC------A-G-C-AGT----A-C-----T-----AGTAG---TAACTGT--------AGCAAAAT---CAG------TAG------CAAT------AGC---------------AATATCGGTGCTGCTACAGCAGTAGT---Atcagtatagag
gi|18 : cagcatgagttgtttttacataagttaA---GCAG---CAGCA-GCAGA------A-G-T-AGT------------------AGTAGTAGTAGT-----------AGCAGCAG---CAG------CAG------CAGata
gi|20 : ---TAGTA-GTAGT------A-G-T-AGT------------------AGTGGTGGTGGTGGT----TA-TGGTGGTAG---TAG------TGG------TAAT------AAT---------------AATAGTAGCAGTA--GCATCAGCAGC---AGC---GGTAGgaacatcaatcatatagaaccatcatataactattaacatatcataaa
gi|17 : A-GCAAC------A-G-C-AGC------------------AGTAGTATTAGT-----------AGCAGTAG---TAG------AAG------TAGT------GGT---------------GGTGGTCGT
gi|19 : t------A-G-T-AGT----A-G-----TG--GTAGTAGAAGGAGTAGC----AG-CAGCAGCAG---CAG------CAA------CAtgtggtggtggtggtggaacgttaactgtctttgtaattcctctgatatat
gi|18 : tatactgtcattgttatatattacttttgtggaaaattatatacggtAGCAGAAGTAGTAGT--------AGTAGTAG---TAG------CAG------CAGC------AGC---------------AGCAG
gi|19 : agcagcagcGTAGTAGTAGTGGT----AG-TAGAAGGAG---TAG------CAG------CAGC------AGC---------------AGCAGgaacatcaatcatatagaaccatcatataactattaacatatcataaa
gi|14 : tatactgtcattgttatatattacttttgtggaaaattatatacgAAGTAGTAGT----TG-TAGCAGCAG---CAG------CAG------TAGA------AGT---------------caaca
gi|15 : agaaatggtgtttgtggtgatagtagtagaagAATAGCAGT--------GGTAGTAG---CAG------CAG------TACT------AGT---------------AGTAACTGTAGCA--AAATCAGTAGC---AAT---AGCAgaagtggtagtaatagcagcagcagcagtagtagttgtagtaattgcagcagcagaa
gi|23 : cagcatgagttgtttttacataagttatA-CAGCAGAAG---TAGGA----TAG------CAGT------AGT---------------AGTAGTGGTatatcggtgctgctacagcagtagtaata
gi|18 : tatcaAGCAGCAG---CAG------CAG------AAGT------AGT---------------AGTAGTAGTAGTA--GCAGCAGCAGC---AGC---AGGAACAggtggtggtggtggtggtagta
gi|17 : AGCAACAG---CAG------CAG------TAGT------ATT---------------AGTAGCAGTAGTA--GAAGTAGtcaatcatatagaaccatcatataactattaacatatcataaa
gi|17 : tAGCAA---CAG------CAG------CAGT------AGT---------------ATTAGT-----------AGCAGTAGT---AGA---AGTAGtggtggtggtcgttgtggtggtggtggtggaacgttaactgtctttgtaattcctctgatatat
gi|19 : t---CGG------TAG------TAGT------AGT---------------GGTAGTAGAAGGA--GTAGCAGCAGC---AGC---AGCAGCAACtggtggtggtcgttgtggtggtggtggtggaacgttaactgtctttgtaattcctctgatatat
gi|14 : tatactgtcattgttatatattacttttgtggaaaattatata------AGT---------------AGTAGTTGTA-----GCAGCAGCAGC---AGT---AGAAGa
gi|14 : agaaatggtgtttgtggtgatagtagtagaagaAGTGGTAGTA--ATAGCAGCAGC---AGC---AGTAGTAtgaagtggtagtaatagcagcagcagcagtagtagttgtagtaattgcagcagcagaa
gi|20 : agaaatggtgtttgtggtgatagtagtagaagacttctactgctgctgctgctacaactactacttgaTAGTAGTAGTAGTAGTAGTGGTGGTGGTGGT---TATGGTGGT---AGTAG------TGGTAATAATAATAGTAGC---AGTgttgtagtaattgcagcagcagaa
gi|15 : TAGCAGTGGTAGTAGCAGCAGTACTAGTAGTAACT------GT---AGCAAAATCAGTAGCAATAGCAATATCGGT----GCTGCTACAG---CAGTAG---------------------TAAagcatcagcagcagcggtag
gi|16 : cagcatgagttgtttttacataagttataaTAACAATAACAACAGCAACAACAACAGCAAT---A------AT---AATAG------TAGCAATATTAATAta
gi|19 : caacaataacaaTAGCAGCAGCAGCAGCAGCAACAtcaaaaatattaacaattgtaagataattataataccaataatagcaacaa
gi|23 : tatactgtcattgttatatattacttttgtggaaaattatatacggtagtagtagtggtagtagaaggagTATCAACAGCAGAAGTAG-GATAGCAGTAGT---A------GT---AGTGG------TGGTGGTGGTGGTGGTGGT---AGT
gi|1 : ATAGTAGTGGTGGTATGAGCAGTAGTAGT---C------ATTTAAGTAA------ACGCATTAGCAGTATTGGTTGCAGTTGTAGTATAAGTAGTTGACTCAAAGAAATTATTGCAATTAAGGTATGTTTACAT-TCGTTG------CCCCAAAATATTAGAAATACCTACCTTT-----A-AAAA----AATGGCGAAAGTGTTAAT------------------AAGCCACACAGTTGTTTATA-------TGA-----------TTACATGCCGGAACAGTATGTa
gi|14 : AGTAATAGCAGCAGCAGCAGTAGTAGT---T------GT---AGTAA------Tctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttcccctcgtcacagactgtggggcaatgtgggataacagaaggtagtatcgatgtccaatatgtactttaagaaaatccactttatacctcattgatggacaaattaaacatttgacaacagataataaaatcgaaaatcgaaataatatttttaaaaatgtacgtctacaataaattgcgaatcatatcatatcctatattaagaatgtgtgccaaactgtgctatgaaactttaaaacttataacaaaattgtataaggtttaggatatcggttaaagtacatatatttaaagtgtaacgataaaatacattctataatctaagtatactattttactggtccacagatgtaaagagtgcttttatactggaatgggtaagctcaatttgcgacattgtcgtatatatccctttaaattgatatggcctcgagacattgatatactgataataaaaatacacatatatcaataatcaagttatcatttacgaggatgctcttaaaatctgatagtgcttatgaaaaactataaaaaggacgaaaatactaaatatatttcataaaaaaaaatataatcagaaattaagacaatttgtcattaacttgcgcagaaataaaattctttattaaatgtgtttagttaaaaaaata
gi|12 : agaaatggtgtttgtggtgatagtagtagaagacttctactgctgctgctgctacaactactacttgaagtggtAGCATCAGCAGCAGTAGCAAAAGCAGT---A------TC---AGT-A------TAGAtgcagcagcagaa
gi|13 : ggtagataagttttgtactgttcttaaaatagacattggaagtaatagtagtagcagtgatagtggtggtggtggttgtattgatgttggtggtagcagttatatcagcaatagcagtAGTAGTAGTAGTAATAATAGCAGC---A------GC---AGCAG------TAGAAACAGTATTAGTCAT---GCTGGTAGTAT---TAGTCG---------------------TAg
gi|18 : tcagcgatagtagtaaaAGCAGCAGCAGCAGAAGTAGTAGT---A------GT---AGTAG------TAGCAGCAGCAGCAGttagtagttctcacattagtagtcgcagtggtatcagtggtaatactaataatgactatact
gi|17 : AGCAACAGCAGCAGTAGTATTAGT---A------GC---AGTAG------TAGAAGTAGTGGTGGTGGT---CGTTGTGGTGG---TGGTGG---------------------TGGA--ACGTTAACTG-TCTTTGTAATTCCTCTGATATATcaggaacatcaatcatatagaaccatcatataactattaacatatcataaa
gi|21 : tGTAGTAGAAGCAGTCACCGTCGT---T------GT---CGTCA------TAGTAATAGTAGTAGTAAT---AGT
gi|9 : CAGCAGTGGTCGTAATAGAAGT---T------GT---AGTAG------TGGTGAAGGTGGTGGTGGT---AGTAGTAGTAT---GTGTTT---------------------T----TA-GTTTACGTATCGTagaagcagtag
gi|23 : tatCAACAGCAGA---A------GT---AG-GA------TAGCAGTAGTAGTAGTGGT---GGTGGTGGTGG---TGGTGG---------------------TAagtagaagtagtcgtggcagttacagcaatagcggttgttgtaatagaatctaatgccctttaaatattttgcctcaaagtaaacatcgcaattaatgtatgtttatttttgttgccccagaatataacgaatacctatcttttcagataaaaaatggcaaaaatgttaataagccactcagtgttttaaacgattacatgccggaactgcatgtc
gi|9 : tat---------------------TAATGTATGTTTATTT-TTGTTG------CCCCAGAATATAACGAATACCTATCTTTT-CAGATAAAA----AATGGCAAAAATGTTAATAAGCCACTCAGTGTTTTAA------------------A-------CGA-----------TTACATGCCGGAACTGCATGTgta
gi|2 : tatcagcagtggtcgtaatagaagttgtagtagtggtgaaggtggtggtggtagtagtagtatgtgtttttagtttacgtatcgtagtagaagtagtcgtggcagttacagcaatagcggttgttgtaatagaatctaatgccctttaaatattttgcctcaaagtaaacatcgcaatT-TCGTTG------CCTCAAAACATTAAAAATCCCTACCTTTTATAAA-AAAAAAATAATGGCCAAAATGTTAGT------------------A------------------AGCCACACCGATTTATATAATGTTACATGCCGGAACAATATGTc
gi|3 : ------------------A-------CGA-----------TTACATGCCGGAACAGTATGTctaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttcccttcgtaacaggctgtgggacaatataaggtagcgtctgtgtccaatatgttttttaagaatatccactttattcttaacagatgggcaaactaaacacttgagaacagataataaaacggaaataatattttataaaacgtacgtctataataaattgcgaatcatatcatataatcacattatgtgccgaactttgctttgaaactttaaaacttacgcggaacaaattgtataaataatgtataggatatctgtttaagtacaaatatttaaagtgtaacgataaaatacagtttataatctaggtatactatgttctggttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgttatgacctcgaggcattgatgtatactgataaaaaacacataaagtcataatta
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|4 ): TTGTTATGACCCCGAAGCATTGATCTAAACTGATAACAAGAATACAAATACAGTCATCATCAAATAATCACTTACAAGAATGCTCAAAAAATCTGATGGTGCTTCTGGCAAACTGTAAAAAGGATCAAATGTTTAAATCTATTTCGTAAAAAAATATATACTCAGAAAATGAAGGTAGTTCTAATAAATTTGCGCAAAAAAAATATGTTGTTAAATGTGTTTAGTTTGTTAATACAAAGTATGCTTCTCTTTGATACACAATTATAAAATACAAGGATTTTTATCTCTTTGTTATTCCTTGTAAATAGTAGATGAACAATAGATGACACATGGTGTTAATATAATCTTTACAATAAAAAAATTGTAGACATGAGCATACTACTGATACATGTAGGTATATCAACCAAGGAATTATATATAAATCCTAAATAGATCCTAGGTGTCAAATATAAATATAAATGTATGAAGTTCATTGTTCATAATAGCACACATCTCATCATATAAAAACAGTATCTAAAGCAAGCACAGAAATGGAGAACTGATCACAAATACGCTGCTCCAGTATAAAAACGGTGCAATATACTGCCTCATTTATACTTTATTTTATTATTGCTTTCAATAATTTTCTTCATAAGAT
Unaligned ( gi|5 ): CGATGTCCAATATGTACTTTAAGCAAATCAACTTTATACCTCACTGGTGGGCAAATTAAACACTTGAGAACAGATAATAAAATGGAAAAAATATTTAAAAAAAACGTACGTCTATTATAAATTGTGAATCATATAATATAATCAGAATATGTGCCAAACTGTGATATGAAACTTTAAAACTTACGCGGAACAAAATTGTATAAATAAGGTTTAGGATATCGGTTAAATAACATATATTTAAAGTGTAACGATAAAATACATTTTATAATCTAGGTATAGTATTTTACTTGTATATAATTTATGTCCACAGCTGTAAAGATTGCTTTTATACTGCAACGGGTAAACTCGATTTGCGACATTGTCGTATACATCCCTTTAAATTGCTATGGCCCCCGAGACATTGATGTATATACACATATATCCATAATCAAGTTATCATTGACGAGGATGCTGTTAAAATCTGATAGTGCTTGTGAAAAACTATAAAAAGGACGAAAGTACTTAAAATATATTTCATAAAATATATACTCAGAAATTAAGACAATTTGTAATTAACTTGCGCAGAAAGAAAAATTATTATTCAATGTGT
Unaligned ( gi|22 ): CACATTCACTTAACTTAATTATGCCCCGAGGCATTGGTGTATACTGAAAACTAGAATACACA
Unaligned ( gi|24 ): TACTATCAAGGACTTGTATCTATATTATTCCTTGGTAGTATGCAGTG
Unaligned ( gi|25 ): ATGCCCCGAGGCATTGGTGTATACTGAAAACTATAATACACAT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111111 5555555 111 111111 11111111 111111 22222 11 5555555 222222 222222 111111 1111 111111 11111111111111111111111111111111111111111111111111111111111111111111 111111 22222222 333333333333 111 1111 999999999999999999999999999999999999999999999999999999999999999999999
lowQualScore : 1 1 1 0 8 0 1 0 3 1 666666 0 1 1 1 66 9999999 1 00 2 000 1 2 9999 0 0 777 111111 1 777 4 4 66 55555555 2 666666 6 0 1 1 66666 3 11 7777777 1 333333 333333 1 1 999999 2222 1 555 2 3 1 888888 88 99 1 99999999999999999999999999999999999999999999999999999999999999999999 4 777 222222 0 5 4 1 1 44 00000000 5 8888 1 6 0 1 444444444444 2 1 6 1 333 0 8 7777 1 444444444444444444444444444444444444444444444444444444444444444444444 1
lowQualScore : . . . . . . . . . . ...... . . . . .. ....... . .. . ... . . .... . . ... ...... . ... . . .. ........ . ...... . . . . ..... . .. ....... . ...... ...... . . ...... .... . ... . . . ...... .. .. . .................................................................... . ... ...... . . . . . .. ........ . .... . . . . ............ . . . . ... . . .... . ..................................................................... .
lowQualScore : 0 0 0 2 2 2 0 8 8 4 444444 4 0 0 0 88 0000000 0 66 3 000 0 8 9999 1 2 000 555555 3 000 0 4 11 55555555 5 444444 0 8 4 0 00000 2 00 8888888 4 000000 000000 0 4 222222 4444 0 888 0 2 3 000000 99 66 3 11111111111111111111111111111111111111111111111111111111111111111111 4 888 888888 1 7 4 0 0 66 77777777 3 9999 0 6 3 0 000000000000 0 0 0 0 555 2 0 0000 4 222222222222222222222222222222222222222222222222222222222222222222222 4
consensus : AGCAGTAGCAGCAGCAGTAGTAGTAGCAGTAGAAGTAGTAGTAACAGCAGCAGCAGCAGTAGTAGTAGTAGTATTGGT--AGNAGCGGNAGTAGTAGTAGTAGCAGCAGNAGCCGTAGTAGTAGTAGTAGTAGTATTAGCAGCGG---CAGTAGTAGNAGTAGTTGTAGTAGTAG---TAGTAGCAGCAGCAGCAGCAGCAGTA---ATAG------TAGTAGTAGT---A-GTAGTAGTAGTA-G--T------AGTAGTAGCAGCAGCAGCAG------CAGCGGTAGTNCTG--A-GTAGA-AGTAGT-GTA-GCAGCAGCAGCAGCAGCAGT------AGTA------GTAGTTGTAGTAGCAGCAGCAGCAGCA------GCAGCAATANTATTATAAGTTGTAGTAGNAGTA---GCGGTGGTATNAGCAGTAGTANGCGCTT---G---A-------------C-------------G----G-TAGTAGNAGCA---ACG--GC-AG---CAG------CAGTAGTAG-TNGTAGTAGTAGNA-GTAGT--------AGTAGTGGTAG--TCGTGGTAGTAGTNG----TAA----GGTATGTTTACTTTCGTTGCCCCAAAATATTANAAATACCTACCTTTT-CAGA-AAAA----AATGGCGAAAATGTTAAT------------------A------------------AGCCA-AC----------CGA-----------TTACATGCCGGAACAGTATGT
Reference ( family-670 ) : AGCAGTAGCAGCAGCAGTAGTANTAGNAGTAGNAGTAGTAGTAGCAGCAGCAGCAGCAGTAGTAGTNGTAGTATTGGT--NGCGGCGGNAGTAGTAGTAGNAGNAGNAGNN--CGTAGTAGTAGTAGTAGTAGTANTAGCAGCAG---CAGTAGTAGNAGTAGTNGTAGTAGTAG---TAGTAGCAGCAGCAGCAGCAGCAGTA---ATAG------TAGTAGTAGT---A-GTAGTAGTAGTA-G--T------AGTAGTAGCAGCAGTAGCAG------CAGCAGTAGTNCTG--A-GTAGN-AGTAGT-GT--GCAGCAGCAGCAGCAGCAGT------AGTA------GTAGTNGTAGTAGCAGCAGCAGCAGCA------GCAGCAATAGTAGTATNAGTAGNAGTAGCAGTA---GCAGTAGTANNAGCAGTAGTAANCGCCT---G---A-------------C-------------G----G-TAGCAGCAGCA---GCA--GC-AG---CAG------CAGTAGTAG-TNGTAGTAGTAGNA-GTAGT--------AGTAGTGGTAG--TNGTAGTANTAGTNG----TAA----NGTACGTTTACNTTCGTTGCCCCGAAATATTANAAATACCTACCTTTT-CAGA-AAAA----AATGGCGAAAATGTTAAT------------------A------------------A-----------------CGA-----------TTACATGCCGGAACAGTATGT
gi|1 : AGTA---GTGGTGGTATGAGCAGTAGTAGTCATTT---A---A--------------------------------G-TA--------A---AC---GC-AT---TAG------CAGTATTGG-TTGCAGTTGTAGTA--TA----------AGTAGTTG-AC--TCAAAGAAATTATTGCAATTAA----GGTATGTTTACATTCGTTGCCCCAAAATATTAGAAATACCTACCTTT-----A-AAAA----AATGGCGAAAGTGTTAAT------------------AAGCCACACAGTTGTTTATA-----------------TGA-----------TTACATGCCGGAACAGTATGT
gi|10 : atGCAGCAG---CAGTAGTACAAGTA---GTAGAACCAG---TAGTAGAAGCAGCAGCAACAGCAGTA---ATAG------TAGTTGTAGT---A-CTAGAAGT-TTC-T--T--------CAGCAGCAGCAGTAGCAG------AAGGAG-AATGCGC--A-GTAGC-AGCAGTAGTA-GCAACAGTAGTAGCAGCAGTACTAGAAGTA------GAAGTTGTAGTAGCAGCAGCAGCAACA--------ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNN---N---N-------------N-------------N----N-NNNNNNNNNNN---NCA--GC-AG---CAG------CCGTATTAC-TAGGAGTAGTACCA-GTctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttcccctcgtcacagactgtggggcaatgtgggataacagaaggtagtatcgatgtccaatatgtactttaagaaaatccactttatacctcattgatggacaaattaaacatttgacaacagataataaaatcgaaaatcgaaataatatttttaaaaatgtacgtctacaataaattgcgaatcatatcatatcctatattaagaatgtgtgccaaactgtgctatgaaactttaaaacttataacaaaattgtataaggtttaggatatcggttaaagtacatatatttaaagtgtaacgataaaatacattctataatctaagtatactattttactggtccacagatgtaaagagtgcttttatactggaatgggtaagctcaatttgcgacattgtcgtatatatccctttaaattgatatggcctcgagacattgatatactgataataaaaatacacatatatcaataatcaagttatcatttacgaggatgctcttaaaatctgatagtgcttatgaaaaactataaaaaggacgaaaatactaaatatatttcataaaaaaaaatataatcagaaattaagacaatttgtcattaacttgcgcagaaataaaattctttattaaatgtgtttagttaaaaaaata
gi|11 : AGTTGTATTA---TCATTATTATAAGTAGTAGCAAGGACTT---G---T-------------CTATATAATTCCTTG----G-TAGTAGCAGTA---GTGTTGTTAG---AAG------AAGTAGTAG-TAGTAGCAGCAGCA-GCAGT--------AGCAGTAATAG--TAGTATTAGTAGTAG----CA
gi|11 : GTAGTAGCAGTAGTGTTGTT--AGAAGAAGTAGTAGTAGTAGCAGCAGCAGC------AGTAGCAGTAATAGTAGTATTAGTAGTAG---CAGCAGAAGCAGTAGCAATAGCAATAG---CAACCACAACAGCAGCAGCAGTAGTA---GTAA------TAGCAGTAGT---A-GTAGTCGTAATA-T--T------AAAAGTAGCAACAGCAGCAG------CAGgcagaagcagtagcaatagcaatagcaaccacaacagcagcagcagtagtagtaatagcagtagtagtagtcgtaatattaaaagtagcaacagcagcagcag
gi|12 : agttgtattatcattattataagtagtagcaaggacttgtctatataattccttgGGAAGTAATAGTAGTAGCAGT-GA-----TAGTGGTGGTGGTGGTTGTATTGAT-GT--------TGGTGGTAGCAGTTATATCAGCAA---TAGCAGTAGCATCAGCAGCAGTAGCA---AAAG------CAGTATCAGT---A--TAG
gi|13 : ggtagataagttttgtactgttcttaaaatagacattCAGCGA---TAGTAGTAAAAGTAGTAGTAGTAATAA---TAGCAGCAGCAGCAGTAGAAACAGTA---TTAGTCATGCTGGTAGTATT---A-GTCGTATTAGTA-G--TTCTCACATTAGTAGTCGCAGTGGTAT------CAGTGGTAATACTA--A-ag
gi|14 : tAGAA---ATGG------TGTTTGTGGT---G-ATAGTAGTAGAA-GACT------TCTACT-GCTGCTGCTGCTA------CAAC--TACTACT------T-GA-AGTGGT-------AGTAATAGCAGCAGCAGC------AGTA------GTAGTTGTAGTAATTGCAGCAGCAGtaatgactatact
gi|14 : GAAGTGGTAGTAATAGCAGCAGCAGCAGTAGTAGTTGTAGTAATTGC--AGCAGCAGAAaa
gi|15 : agaaatggtgtttgtggtgatagtagtagaagacttctactgctgctgctgctacaactactacttAGCAGTGGTAGTAGCAGCAGTACTAGTAGTAACTGTAGCAAAATCAGTAGCAATAGCAATATCGGTGCTGCTACAGCAGTAGTAATA
gi|17 : cagcatgagttgtttttacataagttataatAGCA---ACA--GC-AG---CAG------TAGTATTAG-TAGCAGTAGTAGAA-GTAGT--------GGTGGTGGTCG--TTGTGGTGGTGGTGG----T------GGAACGTTAACTGTCTTTG
gi|18 : tAGCAGCAGCAGCAGAAGT------AGTA------GTAGTAGTAGTAGCAGCAGCAGCAGCA------GGAACAtaattcctctgatatat
gi|19 : GTAGT---A-GTAGTGGTAGTA-G--A------AGGAGTAGCAGCAGCAGCAG------CAGCAtcaatcatatagaaccatcatataactattaacatatcataaa
gi|2 : tatactgtcattgttatatattacttttgtggaaaattatatacgTTCGTTGCCTCAAAACATTAAAAATCCCTACCTTTTATAAA-AAAAAAATAATGGCCAAAATGTTAGT------------------A------------------AGCCACAC----------CGATTTATATAATGTTACATGCCGGAACAATATGTaca
gi|20 : TAGTAGTAGTAGTAGTAGTGGTGGTGGTGG---TTATGGTGGTAGTAGTGGTAATAATAA---TAGTAGCAGTAGCATCAGCAGCAGCG---GTAG------ctaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttcccttcgtaacaggctgtgggacaatataaggtagcgtctgtgtccaatatgttttttaagaatatccactttattcttaacagatgggcaaactaaacacttgagaacagataataaaacggaaataatattttataaaacgtacgtctataataaattgcgaatcatatcatataatcacattatgtgccgaactttgctttgaaactttaaaacttacgcggaacaaattgtataaataatgtataggatatctgtttaagtacaaatatttaaagtgtaacgataaaatacagtttataatctaggtatactatgttctggttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgttatgacctcgaggcattgatgtatactgataaaaaacacataaagtcataatta
gi|21 : GTAGTAGAAGCAGTC---ACCG------TCGTTGTCGTCATA-GTAATAGTAGTA-G--T------AATAGTAGAAGCAGTAG
gi|23 : C-AA---CAG------CAGAAGTAG--GATAGCAGTAGTA-GTAGT--------GGTGGTGGTGG--TGGTGGTGGTAGT
gi|3 : tatA-AAAA----AATGACGGAATTGTTAAT------------------A------------------AGCCATACATTTTTTATACGA-----------TTACATGCCGGAACAGTATGTa
gi|6 : tAGCAGTAGCAGCAGCAATAGTACTAGAAGTAAAAGTAGTGGTAACAGCAGCAGCAGCAATAGTAGTTGTAGTATTGAT--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTACTAGTTGTAGTAGTAGTTTTAGCAGCAG---CAATAGTAGAAGTAGTTATAGTAGTAT---TAGTAACAGCAGCAGCAGCAACAGTA---ATAG------TAGTAGTAGT---A-GTAATATTAGTA-G--T------AGTATTAACAGCAGTAGCAG------CAACAATAGTTCTGGAA-GTAGA-AATAGTCGTT-ACAGCAGCAGCAGCAGCAGT------AGTA------GTAGTTGTATTAACAGCAGCAGCAGCA------GCAGCAACNNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNN---N---NNNNTTAACAGCAGC-------------A----G-CAGCAGCAACA---AC------------------------AGTAG-TTGTAGTAATAGAA-ATAGT--------AATAGTGGTAG--TTGTGGTATTAGTTG----TAA----AGTATGTTTACTTTCGTTGCCCCAATATATTATAAATACCTATCTTTT-CAGA-AAGA----AATGGCAAAAAAGCTAAT------------------A------------------A-----------------CGA-----------TTACATGCCGGAATTGTATGTctaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttcattcccctcatcacatgctgtgagcaatgtgggatgacagaaggtagtatcgatgttcaatttgtacttaaagaaaattcactttatacctcactgattggcaaattaaacacttgagaacagataataaaatggaaataatattttaaaagacttacgtctataataaattgcgaatcatattatgtaatcagaatatgagccaaactgtactataagacttacgcagaacaaaattgtataaataatgttgaggatatcggtaaaagtacatacatttaaagtgtaacgataaaatacattttataatctaggtatacgtttctactggtatagaatttatttccacagctgtaaagattcctggactaactggaacaggtaaactcgatttgcgacattgtcgtatacatccttttaaattgctatggcccccgagacattgatgtatactgataacaaaaatacacatatatccataatcaagttatcatttaggaggatactc
gi|7 : ------GCAGTAATACTTTTATAAGTTGTA--AAAAATA---G-AGT--TA----CAGTGGTA----------G---A---------------------------G----A-TAGT----GAA---ACA--GC-TG---CAG------CA-TA--AG-TGGTAGTAATGGT--GTAGT--------AGTAGTAGTA----AGTAGTA-TAG
gi|7 : tgcAGTTACAGTGGTAGAGATAGT-GAAACAGCTGCAGCATAAGTG---GTAG------TAATGGT-GT---A-GTAGTAGTAGTAAG--T------AGTA-TAGGAAAAGAAGAAGAAAAGATAGTTGTTGTTGTG--GTGTAAATAATAGT-ATAAGTAGTAGGAACAATAACAGT------AGTATAAAAAGCAATAGTAGTATTAGCAGCAACAACACCTTGGGCAGCAATATAATTATAAATATAAGTAGCAATT---ATTGTCGTATCAGAAGCAATGAGTGCCT---G---A-------------C-------------G----GACAGCGAAAGCG---ACA--GC-AG---CTGATTCTACAGTGACAGTTTGTAAAAGTGGCA-GTgaaaagaagaagaaaagatagttgttgttgtggtgtaaataatagtataagtagtaggaacaataacagtagtataaaaagcaatagtagtattagcagcaacaacaccttgggcagcaatataattataaatataagtagcaattattgtcgtatcagaagcaatgagtgcctgacggacagcgaaagcgacagcagctgattctacagtgacagtttgtaaaagtggcagtg
gi|8 : tgcgcagtaatacttttataagttgtaaaaaatagAGTAGTAGCAGTAGAAATAGTAGTATCATAAGTAGCAGCAGTAGATGTAGT--TAT-GAT--AAAAGTGGGAGTAGTAGTAATAACAGCAGTAGCCAAAGCAGTAGCAGTAGTAGTATCAGAAGCAGTATCAGTAGCAACAGTAGATGCAGTGGTAA---TAGTAGTAGCAGTAGCAACAGCAATATCCATAG------TAAAAGTAAT---ATGT-GTAGTAGCA-G--T------Ag
gi|9 : tactcttaattaaaatattatggtataatcaccattataatcaatatattactgttattgttattatatactattattgttatgtttagtattatcattatatttattattacaCA------GCAGTGGTCGTAATAGAAGTTGTAGTAGTGGTGAAGGTGGTGGTGGTAGTAGTAGTATGTGTTTTTAGTTTA-------------C-------------GTATCG-TAGTAGAAGTAGTCGTG--GC-AGTTACAG------CAATAGCGG-TTGTTGTAATAGAATCTAATGCCCTTTAAATATT--TTGCCTCAAAGTAAACATCG----CAATTAATGTATGTTTATTTTTGTTGCCCCAGAATATAACGAATACCTATCTTTT-CAGATAAAA----AATGGCAAAAATGTTAATAAGCCACTCAGTGTTTTAA------------------A-----------------CGA-----------TTACATGCCGGAACTGCATGT
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): TTGTTATGACCCCGAAGCATTGATCTAAACTGATAACAAGAATACAAATACAGTCATCATCAAATAATCACTTACAAGAATGCTCAAAAAATCTGATGGTGCTTCTGGCAAACTGTAAAAAGGATCAAATGTTTAAATCTATTTCGTAAAAAAATATATACTCAGAAAATGAAGGTAGTTCTAATAAATTTGCGCAAAAAAAATATGTTGTTAAATGTGTTTAGTTTGTTAATACAAAGTATGCTTCTCTTTGATACACAATTATAAAATACAAGGATTTTTATCTCTTTGTTATTCCTTGTAAATAGTAGATGAACAATAGATGACACATGGTGTTAATATAATCTTTACAATAAAAAAATTGTAGACATGAGCATACTACTGATACATGTAGGTATATCAACCAAGGAATTATATATAAATCCTAAATAGATCCTAGGTGTCAAATATAAATATAAATGTATGAAGTTCATTGTTCATAATAGCACACATCTCATCATATAAAAACAGTATCTAAAGCAAGCACAGAAATGGAGAACTGATCACAAATACGCTGCTCCAGTATAAAAACGGTGCAATATACTGCCTCATTTATACTTTATTTTATTATTGCTTTCAATAATTTTCTTCATAAGAT
Unaligned ( gi|5 ): CGATGTCCAATATGTACTTTAAGCAAATCAACTTTATACCTCACTGGTGGGCAAATTAAACACTTGAGAACAGATAATAAAATGGAAAAAATATTTAAAAAAAACGTACGTCTATTATAAATTGTGAATCATATAATATAATCAGAATATGTGCCAAACTGTGATATGAAACTTTAAAACTTACGCGGAACAAAATTGTATAAATAAGGTTTAGGATATCGGTTAAATAACATATATTTAAAGTGTAACGATAAAATACATTTTATAATCTAGGTATAGTATTTTACTTGTATATAATTTATGTCCACAGCTGTAAAGATTGCTTTTATACTGCAACGGGTAAACTCGATTTGCGACATTGTCGTATACATCCCTTTAAATTGCTATGGCCCCCGAGACATTGATGTATATACACATATATCCATAATCAAGTTATCATTGACGAGGATGCTGTTAAAATCTGATAGTGCTTGTGAAAAACTATAAAAAGGACGAAAGTACTTAAAATATATTTCATAAAATATATACTCAGAAATTAAGACAATTTGTAATTAACTTGCGCAGAAAGAAAAATTATTATTCAATGTGT
Unaligned ( gi|16 ): CAACAATAACAATAACAATAACAACAGCAACAACAACAGCAATAATAATAGTAGCAATATTAATATCAAAAATATTAACAATTGTAAGATAATTATAATACCAATAATAGCAACAA
Unaligned ( gi|22 ): CACATTCACTTAACTTAATTATGCCCCGAGGCATTGGTGTATACTGAAAACTAGAATACACA
Unaligned ( gi|24 ): TACTATCAAGGACTTGTATCTATATTATTCCTTGGTAGTATGCAGTG
Unaligned ( gi|25 ): ATGCCCCGAGGCATTGGTGTATACTGAAAACTATAATACACAT
Alignments
lowQualScore : 11111111111111111111111111111111111111111
lowQualScore : 4444444444444444 11111 111111 111111 555555555555555555555555 222222 22222222 4444444444444444 6666666666666666 111111 11 1111 111 1111 44444444444444444444444444444444444444444
lowQualScore : 0 1 2 4 1 3 1 66 1 8 6666666666666666 5 0 99 1 3 888 888 1 22222 6 5 888 11 1 777 888888 0 1 3 2 5 55 111111 4 1 1 6 666666666666666666666666 1 333333 0 1 66666666 1 77 6 22 6 1 1 3333333333333333 2 11 00 5555555555555555 555 5 444444 1 11 1 0 1 6 3 6 1 1 7777 0 0 1 333 0 8 7777 1 11111111111111111111111111111111111111111 1
lowQualScore : . . . . . . . .. . . ................ . . .. . . ... ... . ..... . . ... .. . ... ...... . . . . . .. ...... . . . . ........................ . ...... . . ........ . .. . .. . . . ................ . .. .. ................ ... . ...... . .. . . . . . . . . .... . . . ... . . .... . ......................................... .
lowQualScore : 2 4 2 0 7 3 0 55 0 0 4444444444444444 0 3 22 7 1 888 888 0 55555 9 0 888 44 9 000 555555 5 4 6 1 7 55 555555 4 9 9 3 666666666666666666666666 4 000000 8 0 22222222 0 77 7 88 7 0 3 4444444444444444 6 77 66 4444444444444444 666 0 444444 4 99 0 4 0 7 5 4 4 0 0000 8 2 0 555 2 0 0000 4 88888888888888888888888888888888888888888 4
consensus : AGCAGTAGCAGCAGCAGTAGTAGTAGCAGTAGAAGTAGTAGTAACAGCAGCAGCAGCAGTAGNAGTNGTAGTATTGGTAGAAGCGGNAGTAGTAGTAGTAGCA-GCAG----NAGC---CGTAGTAGTAGTAGTAGTAGT--ATTAGCAGCGG---CA---GTAGTAGNA-----GTAGTNGTAGTAGT-AGTAGT---AGCAGCAGCAGCAGCAGCAGTA---ATAG------TAGTAGTAGTA-GTAGTAGTAGTAG--T------AGT-AGTAGCAGCAGCAGCAGCAGCGGTAGTACT---AGTAGAAGTAGT-GT-GCAGCAGCAGCAGCAGCAGTA------GTAGTAGTTGTAGTAGCAGCAGCAGCAGC---AG---CAGCAATANTATTATAAGTNGT-AGTA-GNAGTNG-----------CGGTGGTATNAGCAGTAGTAG-CGTTTGACG--G-TAGCAGNAGCAGCAGCAGCAG------CAGTAGTAG--TAGCAGTAGTAGTAGTAGTAGT-AGTGGTAGTCGTGGTAGTAGTNG----TAAGGTATGTTTACTTTCGTTGCCCCAAAATATTANAAATACCTACCTTTT-CAGA-AAAA----AATGGCGAAAATGTTAATAAGCC------------ACACA-TT-TT----CGA-----------TTACATGCCGGAACAGTATGT
Reference ( family-670 ) : AGCAGTAGCAGCAGCAGTAGTAGTAGCAGTAGAAGTAGTAGTAACAGCAGCAGCAGCAGTAGTAGTAGTAGTATTGGTAGNAGCGGNAGTAGTAGTAGTAGCA-GCAG----NAGC---CGTAGTAGTAGTAGTAGTAGT--ATTAGCAGCGG---CA---GTAGTAGNA-----GTAGTTGTAGTAGT-AGTAGT---AGCAGCAGCAGCAGCAGCAGTA---ATAG------TAGTAGTAGTA-GTAGTAGTAGTAG--T------AGT-AGTAGCAGCAGCAGCAGCAGCGGTAGTNCTG--AGTAGAAGTAGT-GTAGCAGCAGCAGCAGCAGCAGTA------GTAGTAGTTGTAGTAGCAGCAGCAGCAGC---AG---CAGCAATANTATTATAAGTTGT-AGTA-GNAGTAG-----------CGGTGGTATNAGCAGTAGTANGCGCTTGACG--G-TAGTAGNAGCAACGGCAGCAG------CAGTAGTAG--TNGTAGTAGTAGNAGTAGTAGT-AGTGGTAGTCGTGGTAGTAGTNG----TAAGGTATGTTTACTTTCGTTGCCCCAAAATATTANAAATACCTACCTTTT-CAGA-AAAA----AATGGCGAAAATGTTAATAAGCC------------A-AC-----------CGA-----------TTACATGCCGGAACAGTATGT
gi|1 : AGTAG-----------TGGTGGTATGAGCAGTAGTAGTCATTTAA--------GTA-----AACG-CATTAG------CAGTATTGG--TTGCAGTTGTAGTA-TA--AGT-AGTTG-ACTCAAAGAAATTATTGCAATTAAGGTATGTTTACATTCGTTGCCCCAAAATATTAGAAATACCTACCTTT-----A-AAAA----AATGGCGAAAGTGTTAATAAGCC------------ACACAGTTGTTTATATGA-----------TTACATGCCGGAACAGTATGT
gi|10 : atGCAGCAG---CA---GTAGTACAA-----GTAGT---AGAACC-AGTAGT---AGAAGCAGCAGCAACAGCAGTA---ATAG------TAGTTGTAGTA-CTAGAAGT--T----T------CTTCAGCAGCAGCAGTAGCAGAAGGAG-AATGCGC--AGTAGCAGCAGTAGTAGCAACAGTAGTAGCAGCAGTACTAGAAGTAGAAGTTGTAGTAGCAGCAGCAGCAAC---A-----ANNNNNNNNNNNNNNNNNNNN-NNNN-NNNNNNN-----------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--N-NNNNNNNNNNNNCAGCAGCAG------CCGTATTAC--TAGGAGTAGTACCAGTctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttcccctcgtcacagactgtggggcaatgtgggataacagaaggtagtatcgatgtccaatatgtactttaagaaaatccactttatacctcattgatggacaaattaaacatttgacaacagataataaaatcgaaaatcgaaataatatttttaaaaatgtacgtctacaataaattgcgaatcatatcatatcctatattaagaatgtgtgccaaactgtgctatgaaactttaaaacttataacaaaattgtataaggtttaggatatcggttaaagtacatatatttaaagtgtaacgataaaatacattctataatctaagtatactattttactggtccacagatgtaaagagtgcttttatactggaatgggtaagctcaatttgcgacattgtcgtatatatccctttaaattgatatggcctcgagacattgatatactgataataaaaatacacatatatcaataatcaagttatcatttacgaggatgctcttaaaatctgatagtgcttatgaaaaactataaaaaggacgaaaatactaaatatatttcataaaaaaaaatataatcagaaattaagacaatttgtcattaacttgcgcagaaataaaattctttattaaatgtgtttagttaaaaaaata
gi|11 : ATTATTATAAGTAGT-AGCAAGGACTTGTCTATATAATTCCTTGGTAGTAGCAGTAGTGT-TGTTAGAAGAAG-TAGTAGTAGTAGCAGCAGCAG------CAGTAGCAG--TAATAGTAGTATTAGTAGTAGC-AGCAGAAGCAGTAGCAATAGCAA----TA
gi|11 : agttgtattatcGTAGTAGCAGTAGTGTTGTTAGAAG---AAGTAGTAGTAGTAGCA-GCAG----CAGC------AGTAGCAGTAATAGTAGT--ATTAGTAGTAG---CA---GCAGAAGCA-----GTAGCAATAGCAAT-AGCAACCACAACAGCAGCAGCAGTAGTAGTA---ATAGCAG---TAGTAGTAGTC-GTAATATTAAAAG--T------AGC-AACAGCAGCAGCAGgcaaccacaacagcagcagcagtagtagtaatagcagtagtagtagtcgtaatattaaaagtagcaacagcagcagcag
gi|12 : agttgtattatcattattataagtagtagcaaggacttgtctatataattccttgGGAAGTAATAGTAGTAGCA-GT-G----A--------TAGTGGTGGTGGTGGTTGT--ATT------GA---TG---TTGGTGGTA-----GCAGTTATATCAGC-AATAGC---AGTAGCATCAGCAGCAGTAGCA---AAAG------CAGTATCAGTA--TAG
gi|13 : ggtagataagttttgtactgttcttaaaatagacattCAGCGA---TA---GTAGTAAAA-----GTAGTAGTAGTAAT-AATAGC---AGCAGCAGCAGTAGAAACAGTA---TTAGTCATGCTGGTAGTATTA-GTCGTATTAGTAG--TTCTCACATT-AGTAGTCGCAGTGGTATCAGTGGTAATACTA--Aag
gi|14 : tAGAA---ATGG------TGTTTGTGGTG-ATAGTAGTAGAAGACT------TCT-ACT-GCTGCTGCTGCTACAAC--TACTACT-----T-GAAGTGGT------AGTAATAGCAGCAGCAGCA------GTAGTAGTTGTAGTAATTGCAGCAGCAGtaatgactatact
gi|14 : GAAGTGGTAGTAATAGCAGCAGCAGCAGTAGTAGTTGTAGTAATTGCAGCAGCAGAAaa
gi|15 : agaaatggtgtttgtggtgatagtagtagaagacttctactgctgctgctgctacaactactacttAGCAGTGGTAGTAGCAGCAGTACTAGTAGTAACTGTAGCAAAATCAGTAGCAATAGCAATATCGGT-GCTGCTACAGCAGTAGTAATA
gi|17 : cagcatgagttgtttttacataagttataatAGCAACAGCAGCAG------TAGTATTAG--TAGCAGTAGTAGAAGTAGTGGT-GGTGGTCGTTGTGGTGGTGGTGG----T--GGAACGTTAACTGTCTTTG
gi|18 : tAGCAGCAGCAGCAGAAGTA------GTAGTAGTAGTAGTAGCAGCAGCAGCAGC---AGGAACATCAATCATATtaattcctctgatatat
gi|19 : ATTATATACGGT-AGTA-GTAGT--------------GGTAGTAGAAGGAGTAGCAG--------CA--G-CAGCAGCAGCAACagaaccatcatataactattaacatatcataaa
gi|19 : tatactgtcattgttatatattacttttgtggaaaGTAGTA-GTAGTGGTAGTAG--A------AGG-AGTAGCAGCAGCAGCAGCAGCa
gi|2 : tatactgtcattgttatatattacttttgtggaaaattatatacgTTCGTTGCCTCAAAACATTAAAAATCCCTACCTTTTATAAA-AAAAAAATAATGGCCAAAATGTTAGTAAGCC------------ACAC-----------CGATTTATATAATGTTACATGCCGGAACAATATGTaaca
gi|20 : TAGT-AGTAGT---AGTAGTAGTGGTGGTGGTGGTT---ATGG------TGGTAGTAGTG-GTAATAATAATAG--T------AGC-AGT---AGCATCAGCAGCAGCGGTAGctaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttcccttcgtaacaggctgtgggacaatataaggtagcgtctgtgtccaatatgttttttaagaatatccactttattcttaacagatgggcaaactaaacacttgagaacagataataaaacggaaataatattttataaaacgtacgtctataataaattgcgaatcatatcatataatcacattatgtgccgaactttgctttgaaactttaaaacttacgcggaacaaattgtataaataatgtataggatatctgtttaagtacaaatatttaaagtgtaacgataaaatacagtttataatctaggtatactatgttctggttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgttatgacctcgaggcattgatgtatactgataaaaaacacataaagtcataatta
gi|21 : GTAGTAGAAGCAGTC---ACCG------TCGTTGTCGTC-ATAGTAATAGTAG--T------AGT-AATAGTAGAAGCAGTAG
gi|23 : CAACAG------CAGAAGTAGGATAGCAGTAGTAGTAGTGGTGGT-GGTGGTGGTGGTGGTAGTA
gi|3 : tatA-AAAA----AATGACGGAATTGTTAATAAGCC------------ATACATTTTTTATA-CGA-----------TTACATGCCGGAACAGTATGT
gi|6 : tAGCAGTAGCAGCAGCAATAGTACTAGAAGTAAAAGTAGTGGTAACAGCAGCAGCAGCAATAGTAGTTGTAGTATTGATNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN----NNNN---CGTACTAGTTGTAGTAGTAGT--TTTAGCAGCAG---CA---ATAGTAGAA-----GTAGTTATAGTAGT-ATTAGT---AACAGCAGCAGCAGCAACAGTA---ATAG------TAGTAGTAGTA-GTAATATTAGTAG--T------AGT-ATTAACAGCAGTAGCAGCAACAATAGTTCTGGAAGTAGAAATAGTCGTTACAGCAGCAGCAGCAGCAGTA------GTAGTAGTTGTATTAACAGCAGCAGCAGC---AG---CAGCAACNNNNNNNNNNNNNNN-NNNN-NNNNNNN-----------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NTTAACAGCAGCAGCAGCAGCAA------CAACAGTAG--TTGTAGTAATAGAAATAGTAAT-AGTGGTAGTTGTGGTATTAGTTG----TAAAGTATGTTTACTTTCGTTGCCCCAATATATTATAAATACCTATCTTTT-CAGA-AAGA----AATGGCAAAAAAGCTAATAA------------------------------CGA-----------TTACATGCCGGAATTGTATGTctaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttcattcccctcatcacatgctgtgagcaatgtgggatgacagaaggtagtatcgatgttcaatttgtacttaaagaaaattcactttatacctcactgattggcaaattaaacacttgagaacagataataaaatggaaataatattttaaaagacttacgtctataataaattgcgaatcatattatgtaatcagaatatgagccaaactgtactataagacttacgcagaacaaaattgtataaataatgttgaggatatcggtaaaagtacatacatttaaagtgtaacgataaaatacattttataatctaggtatacgtttctactggtatagaatttatttccacagctgtaaagattcctggactaactggaacaggtaaactcgatttgcgacattgtcgtatacatccttttaaattgctatggcccccgagacattgatgtatactgataacaaaaatacacatatatccataatcaagttatcatttaggaggatactc
gi|7 : G---CAGTAATACTTTTATAAGTTGT-A--A-AAAATAG-----------AG------TTA-CAGTGGTA-------GA-G--A-TAGT-GAAACAGCTGCAGCAT------AAGTGGTAG--TAATGGT-GTAGTAGTAGTAGTAAGTAGTA
gi|7 : tgcAGTGGTAGAGATAGTGAAACAGCTGCAG---CATAAGTGGTAGTAATGGTGTAGTAGTAGTAGTAAGTAGT---A-TAGGAAAAGAAGAAGAAAAG---ATAG------TTGTTGTTGTG-GT-GTA--AATAA--T------AGT-ATAAGTAGTAGGAACAATAACAGTAGTA-------TAAAA--------------------AGCAATAGTA------GTA-T--------TAGCAGCAACAACACCTTGGG---CAGCAATATAATTATAAA-TATAAGTA-GCAATTA-----------TTGTCGTATCAGAAGCAATGAGTGCCTGACG--GACAGCGAAAGCGACAGCAGCTGATTCTACAGTGACAGT-TTGTAAAAGTGGCAGTtaggaaaagaagaagaaaagatagttgttgttgtggtgtaaataatagtataagtagtaggaacaataacagtagtataaaaagcaatagtagtattagcagcaacaacaccttgggcagcaatataattataaatataagtagcaattattgtcgtatcagaagcaatgagtgcctgacggacagcgaaagcgacagcagctgattctacagtgacagtttgtaaaagtggcagtg
gi|8 : tgcgcagtaatacttttataagttgtaaaaaatagagttacAGTAGTAGCAGTAGAAATAGTAGTATCATAAGTAGCAGCAGTAGATGTAGT--TAT-GATAAAAGTGGGAGTAGTAGTAATAACA-GCAG----TAGC---CAAAGCAGTAGCAGTAGTAGT--ATCAGAAGCAGTATCA---GTAGCAACA-----GTAGATGCAGTGGT-AATAGT---AGTAGCAGTAGCAACAGCAATATCCATAG------TAAAAGTAATATGT-GTAGTAGCAG--T------Ag
gi|9 : tactcttaattaaaatattatggtataatcaccattataatcaatatattactgttattgttattatatactattattgttatgtttagtattatcattatatttattattacaTATCAGCAGTGGTCGTAATAGAAGTTGTAGTAGTGGTGAAGGTGGTGGTGGTAGTAGTAGTATGT-GTTTTTAGTTTACGTA-TCGTAGTAGAAGTAGT--CGTGGCAGTTA---CA---GCAATAGCG-----GTTGTTGTAATAG
gi|9 : ----TAATGTATGTTTATTTTTGTTGCCCCAGAATATAACGAATACCTATCTTTT-CAGATAAAA----AATGGCAAAAATGTTAATAAGCCACTCAGTGTTTTA-AA-----------CGA-----------TTACATGCCGGAACTGCATGTaatctaatgccctttaaatattttgcctcaaagtaaacatcgcaattaatgtatgtttatttttgttgccccagaatataacgaatacctatcttttcagataaaaaatggcaaaaatgttaataagccactcagtgttttaaacgattacatgccggaactgcatgtc
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): TTGTTATGACCCCGAAGCATTGATCTAAACTGATAACAAGAATACAAATACAGTCATCATCAAATAATCACTTACAAGAATGCTCAAAAAATCTGATGGTGCTTCTGGCAAACTGTAAAAAGGATCAAATGTTTAAATCTATTTCGTAAAAAAATATATACTCAGAAAATGAAGGTAGTTCTAATAAATTTGCGCAAAAAAAATATGTTGTTAAATGTGTTTAGTTTGTTAATACAAAGTATGCTTCTCTTTGATACACAATTATAAAATACAAGGATTTTTATCTCTTTGTTATTCCTTGTAAATAGTAGATGAACAATAGATGACACATGGTGTTAATATAATCTTTACAATAAAAAAATTGTAGACATGAGCATACTACTGATACATGTAGGTATATCAACCAAGGAATTATATATAAATCCTAAATAGATCCTAGGTGTCAAATATAAATATAAATGTATGAAGTTCATTGTTCATAATAGCACACATCTCATCATATAAAAACAGTATCTAAAGCAAGCACAGAAATGGAGAACTGATCACAAATACGCTGCTCCAGTATAAAAACGGTGCAATATACTGCCTCATTTATACTTTATTTTATTATTGCTTTCAATAATTTTCTTCATAAGAT
Unaligned ( gi|5 ): CGATGTCCAATATGTACTTTAAGCAAATCAACTTTATACCTCACTGGTGGGCAAATTAAACACTTGAGAACAGATAATAAAATGGAAAAAATATTTAAAAAAAACGTACGTCTATTATAAATTGTGAATCATATAATATAATCAGAATATGTGCCAAACTGTGATATGAAACTTTAAAACTTACGCGGAACAAAATTGTATAAATAAGGTTTAGGATATCGGTTAAATAACATATATTTAAAGTGTAACGATAAAATACATTTTATAATCTAGGTATAGTATTTTACTTGTATATAATTTATGTCCACAGCTGTAAAGATTGCTTTTATACTGCAACGGGTAAACTCGATTTGCGACATTGTCGTATACATCCCTTTAAATTGCTATGGCCCCCGAGACATTGATGTATATACACATATATCCATAATCAAGTTATCATTGACGAGGATGCTGTTAAAATCTGATAGTGCTTGTGAAAAACTATAAAAAGGACGAAAGTACTTAAAATATATTTCATAAAATATATACTCAGAAATTAAGACAATTTGTAATTAACTTGCGCAGAAAGAAAAATTATTATTCAATGTGT
Unaligned ( gi|16 ): CAACAATAACAATAACAATAACAACAGCAACAACAACAGCAATAATAATAGTAGCAATATTAATATCAAAAATATTAACAATTGTAAGATAATTATAATACCAATAATAGCAACAA
Unaligned ( gi|22 ): CACATTCACTTAACTTAATTATGCCCCGAGGCATTGGTGTATACTGAAAACTAGAATACACA
Unaligned ( gi|24 ): TACTATCAAGGACTTGTATCTATATTATTCCTTGGTAGTATGCAGTG
Unaligned ( gi|25 ): ATGCCCCGAGGCATTGGTGTATACTGAAAACTATAATACACAT
Alignments
lowQualScore : 666666666666666 111111 111111 111111111 44444444444444444444444 111 777777 222222 11111111 11 1111 4444444444444444 555555555555555 1111 111 1111 77777777777777777 111
lowQualScore : 3 4 0 0 1 1 0 3 1 5 1 3 1 8 000000000000000 2 1 1 9999 1 66 888 0 777 111111 1 44 222222 4 444444444 4 0 0 888 55555555555555555555555 1 444 888888 1 1 333333 1 99999999 11 1 1 0 0000 1 3 1 3333333333333333 1 2 5 111111111111111 88888 777 3 777 0 5 3 7 0 1 4444 0 1 333 0 8 7777 1 1 99999999999999999 444 1
lowQualScore : . . . . . . . . . . . . . . ............... . . . .... . .. ... . ... ...... . .. ...... . ......... . . . ... ....................... . ... ...... . . ...... . ........ .. . . . .... . . . ................ . . . ............... ..... ... . ... . . . . . . .... . . ... . . .... . . ................. ... .
lowQualScore : 7 0 2 2 0 0 8 8 4 8 2 6 0 0 222222222222222 5 8 1 0000 0 22 888 1 000 555555 3 77 888888 4 444444444 5 2 2 888 77777777777777777777777 4 000 000000 4 4 000000 4 55555555 00 0 0 2 2222 0 2 0 3333333333333333 0 6 7 111111111111111 44444 888 9 222 9 0 5 8 3 0 2222 2 0 555 2 0 0000 4 0 00000000000000000 000 4
consensus : AGCAGTAGCAGCAGCAGTAGTAGTAGCAGTAGAANTAGTAGTANCAGCAGCAGCAGCAGTAGNAGTAGTAGTATTGGTAGANGCGGNAGTAGTAGTAGTAGCA-GCAG----NAGC---CGTAGTAGTAGTAGTAGTAGTNTTGGCGGCGG---CAGTAGTAGCAGTAGTNGTAGTAGTAG---TAGTAGCAGCAGCAGCAGCAGCAGTA---ATAG------TAGTAGTAGTA-GTAGTAGT------AGTA-G--T------AGTAGTAGCAGCAGCAGCA---GCA---------------GCGGT---AGTACT---AGTAGAAGTAGT------AGCAGCAGCAGCAGCAGTA------GTAGTAGTTGTAGTAGCAGCAGCAGCAGC---AG---CA--GCAATANTATTATAAGTAGTAGCA-GNAATNG-----------CGGTGGTATNAGCAGTAGT-AG-CGTTTGACG--G--TAGTAGAAGCAGCAGCAGCAG---CAGTAGTAGTAGCAGT--AGTAGTAGTAGT-AGTAGTGGTAGTNGCGGTAGTAGTNG----TAAGGTATGTTTACTTTCGTTGCCCCAAAATATTANAAATACCTACCTTTT-CAGA-AAAA----AATGGCGAAAATGTTAATAAGCCACAC--AG--TT-T-TTAA--CGA---TTACATGCCGGAACAGTATGT
Reference ( family-670 ) : AGCAGTAGCAGCAGCAGTAGTAGTAGCAGTAGAAGTAGTAGTAACAGCAGCAGCAGCAGTAGNAGTNGTAGTATTGGTAGAAGCGGNAGTAGTAGTAGTAGCA-GCAG----NAGC---CGTAGTAGTAGTAGTAGTAGTATTAGCAGCGG---CAGTAGTAGNAGTAGTNGTAGTAGTAG---TAGTAGCAGCAGCAGCAGCAGCAGTA---ATAG------TAGTAGTAGTA-GTAGTAGT------AGTA-G--T------AGTAGTAGCAGCAGCAGCA---GCA---------------GCGGT---AGTACT---AGTAGAAGTAGT-G-TGCAGCAGCAGCAGCAGCAGTA------GTAGTAGTTGTAGTAGCAGCAGCAGCAGC---AG---CA--GCAATANTATTATAAGTNGTAGTA-GNAGTNG-----------CGGTGGTATNAGCAGTAGT-AG-CGTTTGACG--G--TAGCAGNAGCAGCAGCAGCAG---CAGTAGTAGTAGCAGT--AGTAGTAGTAGT-AGTAGTGGTAGTCGTGGTAGTAGTNG----TAAGGTATGTTTACTTTCGTTGCCCCAAAATATTANAAATACCTACCTTTT-CAGA-AAAA----AATGGCGAAAATGTTAATAAGCCACAC--A---TT-T-T-----CGA---TTACATGCCGGAACAGTATGT
gi|1 : AGTAG-----------TGGTGGTATGAGCAGTAGT-AGTCATTTAA----G--TA--------AAC-GCATTAG---CAGTATTGGTTGCAGT--TGTAGTA-TA---AGTAGTTG-ACTCAAAGAAATTATTGCAATTAAGGTATGTTTACATTCGTTGCCCCAAAATATTAGAAATACCTACCTTT-----A-AAAA----AATGGCGAAAGTGTTAATAAGCCACAC--AG--TTGT-TTATA-TGA---TTACATGCCGGAACAGTATGT
gi|10 : atGCAGCAG---CAGTAGTACAAGTAGT---AGAACCAG---TAGTAGAAGCAGCAGCAACAGCAGTA---ATAG------TAGTTGTAGTA-CTAGAAGTTTCTTCAGCA-G--C------AGCAGTAGCAGAAGGAGAATGCGCA---------------GTAGC---AGCAGT---AGTAGCAACAGT------AGTAGCAGCAGTACTAGAA------GTAGAAGTTGTAGTAGCAGCAG---CAGC---AA---CAANNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNN-----------NNNNNNNNNNNNNNNNNNN-NN-NNNNNNNNN--N--NNNNNNNNNNNNCAGCAGCAG---CCGTATTACTAGGAGT--AGTACCAGTctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttcccctcgtcacagactgtggggcaatgtgggataacagaaggtagtatcgatgtccaatatgtactttaagaaaatccactttatacctcattgatggacaaattaaacatttgacaacagataataaaatcgaaaatcgaaataatatttttaaaaatgtacgtctacaataaattgcgaatcatatcatatcctatattaagaatgtgtgccaaactgtgctatgaaactttaaaacttataacaaaattgtataaggtttaggatatcggttaaagtacatatatttaaagtgtaacgataaaatacattctataatctaagtatactattttactggtccacagatgtaaagagtgcttttatactggaatgggtaagctcaatttgcgacattgtcgtatatatccctttaaattgatatggcctcgagacattgatatactgataataaaaatacacatatatcaataatcaagttatcatttacgaggatgctcttaaaatctgatagtgcttatgaaaaactataaaaaggacgaaaatactaaatatatttcataaaaaaaaatataatcagaaattaagacaatttgtcattaacttgcgcagaaataaaattctttattaaatgtgtttagttaaaaaaata
gi|11 : ATTATTATAAGTAGTAGCAAGGACTTGTCTATATAATTCCTTGGTAGTAGCAGTAGT-GT-TGTTAGAAGAAG--TAGTAGTAGTAGCAGCAGCAG---CAGTAGCAGTAATAGT--AGTATTAGTAGT-AGCAGCAGAAGCAGTAGCAATAGCAA----TA
gi|11 : agttgtattatcGTAGTAGCAGTAGTGTTGTTAGAAGAAGTAGTAGTAGTAGCAGCA-GCAG----C---------AGTAGCAGTAATAGTAGTATTAGTAGTAG---CAGCAGAAGCAGTAGCAATAGCAATAG---CAACCACAACAGCAGCAGCAGTAGTA---GTAA------TAGCAGTAGTA-GTAGTCGT------AATA-T--T------AAAAGTAGCAACAGCAGCA---GCA---------------Ggcaaccacaacagcagcagcagtagtagtaatagcagtagtagtagtcgtaatattaaaagtagcaacagcagcagcag
gi|12 : agttgtattatcattattataagtagtagcaaggacttgtctatataattccttgGGAAGTAATAGTAGTAGCA-GT-G----A--------TAGTGGTGGTGGTGGTTGTATTGATGTTGG------TGGTAGCAGTTATATCAGCAATAG---CAGTAGCATCAGCAGCAGTAGCA--A---A-AG------CAGTATCAGTA--TAG
gi|13 : ggtagataagttttgtactgttcttaaaatagacattCAGCGA---TAGTAGTAAAAGTAGTAGTAGTAATAA---TAGCAGCAGCAGCAGTAGAAACAGTA---TTAGTCATGCTGGTAGTATTA-GTCGTATT------AGTA-G--TTCTCACATTAGTAGTCGCAGTGGTA---TCA---------------GTGGT---AATACT---AATAag
gi|14 : tAGAA---ATGG------TGTTTGTGGTG-ATAGTAGT------AGAA-GACT------TCTACT-GCTGCTGCTGCT---ACA---------------AC--------TACT---ACTTGAAGTGGT------AGTAATAGCAGCAGCAGCA------GTAGTAGTTGTAGTAATTGCAGCAGCAGatgactatact
gi|15 : AGTTATAAT-AGCAGTGGTAGTAGCAGCAGTACTAG----TAaa
gi|15 : cagcatgagttgtttttacataAGCAGTGGTAGTAGCAGCAGTACTAGTAGTAACTGTAGCAAAATCAGTAGCAATAGCAATATCGGT-GCTGCTACAGCAGTAGTAATAgtaactgtagcaaaatcagtagcaatagcaatatcggtgctgctacagcagtagtaata
gi|17 : cagcatgagttgtttttacataagttataatAGCAACAGCAGCAG---TAGTATTAGTAGCAGT--AGTAGAAGTAGT-GGTGGTGGTCGTTGTGGTGGTGGTGG----T--GGAACGTTAACTGTCTTTG
gi|18 : tAGCAGCAGCAGCAGAAGTA------GTAGTAGTAGTAGTAGCAGCAGCAGCAGC---AGGAACA--TCAATCATATtaattcctctgatatat
gi|19 : TATATACGGTAGT-AG-----TAGTG--G--TAGTAGAAGGAGTAGCAGCAG---CAGCAGCAGCAACAagaaccatcatataactattaacatatcataaa
gi|19 : tatactgtcattgttatatattacttttgtggaaaatGTAGTA-GTAGTGGT------AGTA-G--A------AGGAGTAGCAGCAGCAGCA---GCA---------------GC
gi|2 : tatactgtcattgttatatattacttttgtggaaaattatatacgTTCGTTGCCTCAAAACATTAAAAATCCCTACCTTTTATAAA-AAAAAAATAATGGCCAAAATGTTAGTAAGCCACACCGA---TT-TAT-----ATAATGTTACATGCCGGAACAATATGTaaca
gi|20 : TAGTAGTAGTAGTAGTAGTGGTGGTGGTGG---TTATGGTGGTAGTAGTGGTAATAATAA---TAGTAGCAGTAGCATCAGCAGCAGCG---GTAG------ctaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttcccttcgtaacaggctgtgggacaatataaggtagcgtctgtgtccaatatgttttttaagaatatccactttattcttaacagatgggcaaactaaacacttgagaacagataataaaacggaaataatattttataaaacgtacgtctataataaattgcgaatcatatcatataatcacattatgtgccgaactttgctttgaaactttaaaacttacgcggaacaaattgtataaataatgtataggatatctgtttaagtacaaatatttaaagtgtaacgataaaatacagtttataatctaggtatactatgttctggttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgttatgacctcgaggcattgatgtatactgataaaaaacacataaagtcataatta
gi|21 : GTAGTAGAAGCAGTC---ACCG------TCGTTGTCGTC-ATAGTAAT------AGTA-G--T------AGTAATAGTAGAAGCAGTA---G
gi|23 : CAACAGCAG---AAGTAGGA-TAGCAGT--AGTAGTAGTGGT-GGTGGTGGTGGTGGTGGTAGTA
gi|3 : tatA-AAAA----AATGACGGAATTGTTAATAAGCCATAC--A---TT-T-TTTATACGA---TTACATGCCGGAACAGTATGT
gi|6 : tAGCAGTAGCAGCAGCAATAGTACTAGAAGTAAAAGTAGTGGTAACAGCAGCAGCAGCAATAGTAGTTGTAGTATTGATNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN----NNNN---CGTACTAGTTGTAGTAGTAGTTTTAGCAGCAG---CAATAGTAGAAGTAGTTATAGTAGTAT---TAGTAACAGCAGCAGCAGCAACAGTA---ATAG------TAGTAGTAGTA-GTAATATT------AGTA-G--T------AGTATTAACAGCAGTAGCA---GCA---------------ACAAT---AGTTCTGGAAGTAGAAATAGTCGTTACAGCAGCAGCAGCAGCAGTA------GTAGTAGTTGTATTAACAGCAGCAGCAGC---AG---CA--GCAACNNNNNNNNNNNNNNNNNNN-NNNNNNN-----------NNNNNNNNNNNNNNNNNNN-NN-NNNNNNNNN--NNTTAACAGCAGCAGCAGCAGCAA---CAACAGTAGTTGTAGT--AATAGAAATAGT-AATAGTGGTAGTTGTGGTATTAGTTG----TAAAGTATGTTTACTTTCGTTGCCCCAATATATTATAAATACCTATCTTTT-CAGA-AAGA----AATGGCAAAAAAGCTAATAA------------------------CGA---TTACATGCCGGAATTGTATGTctaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttcattcccctcatcacatgctgtgagcaatgtgggatgacagaaggtagtatcgatgttcaatttgtacttaaagaaaattcactttatacctcactgattggcaaattaaacacttgagaacagataataaaatggaaataatattttaaaagacttacgtctataataaattgcgaatcatattatgtaatcagaatatgagccaaactgtactataagacttacgcagaacaaaattgtataaataatgttgaggatatcggtaaaagtacatacatttaaagtgtaacgataaaatacattttataatctaggtatacgtttctactggtatagaatttatttccacagctgtaaagattcctggactaactggaacaggtaaactcgatttgcgacattgtcgtatacatccttttaaattgctatggcccccgagacattgatgtatactgataacaaaaatacacatatatccataatcaagttatcatttaggaggatactc
gi|7 : G---CA--GTAATACTTTTATAAGTTGTA--A-AAAATAG-----------AG------TTA-CAGTGGT-AG-------A-G--A--TAGT-GAAACAGCTGCAGCAT---AAGTGGTAGTAATGGTGTAGTAGTAGTAGTAAGTAGT
gi|7 : tgcAGTTACAGTGGTAGAGATAGT-GAAACAGCTGCAGCATAAGTG---GTAG------TAATGGT-GTA-GTAGTAGT------AGTAAG--T------AGTA-TAGGAAAAGAAGAA---GAAAAGATAGTTGTTGTTGTGGTGTAAATAAT---AGTATAAGTAGT------AGGAACAATAACAGTAGTATAAAAAGCAATAGTAGTATTAGCAGCAACAACACCTTGGG---CA--GCAATATAATTATAAATATAAGTA-GCAATTA-----------TTGTCGTATCAGAAGCAATGAG-TGCCTGACG--GA-CAGCGAAAGCGACAGCAGCTGATTC--TA-CAGTGACAGT----TTGTAAAAGT-GGCAGTGataggaaaagaagaagaaaagatagttgttgttgtggtgtaaataatagtataagtagtaggaacaataacagtagtataaaaagcaatagtagtattagcagcaacaacaccttgggcagcaatataattataaatataagtagcaattattgtcgtatcagaagcaatgagtgcctgacggacagcgaaagcgacagcagctgattctacagtgacagtttgtaaaagtggcagtg
gi|8 : tgcgcagtaatacttttataagttgtaaaaaatagAGTAGTAGCAGTAGAAATAGTAGTATCATAAGTAGCAGCAGTAGATGTAGT--TAT-GATAAAAGTGGGAGTAGTAGTAATAACA-GCAG----TAGC---CAAAGCAGTAGCAGTAGTAGTATCAGAAGCAGTATCAGTAGCAACAGTAGATGCAGTGGTAA---TAGTAGTAGCAGTAGCAACAGCAATATCCATAG------TAAAAGTAATATGT-GTAGT------AGCA-G--T------A
gi|9 : tactcttaattaaaatattatggtataatcaccattataatcaatatattactgttattgttattatatactattattgttatgtttagtattatcattatatttattattacaTATCAGCAGTGGTCGTAATAGAAGTTGTAGTAGTGGTGAAGGTGGTGGTGGTAGTAGTAGTATGT-GTTTTTAGTTTACGTA-TCGTAGTAGAAGTAGTCGTGGCAGTTA---CAGCAATAGCGGTTGTTGTAATAG
gi|9 : ----TAATGTATGTTTATTTTTGTTGCCCCAGAATATAACGAATACCTATCTTTT-CAGATAAAA----AATGGCAAAAATGTTAATAAGCCACTC--AGTGTT-T-TAAA--CGA---TTACATGCCGGAACTGCATGTaatctaatgccctttaaatattttgcctcaaagtaaacatcgcaattaatgtatgtttatttttgttgccccagaatataacgaatacctatcttttcagataaaaaatggcaaaaatgttaataagccactcagtgttttaaacgattacatgccggaactgcatgtc
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): TTGTTATGACCCCGAAGCATTGATCTAAACTGATAACAAGAATACAAATACAGTCATCATCAAATAATCACTTACAAGAATGCTCAAAAAATCTGATGGTGCTTCTGGCAAACTGTAAAAAGGATCAAATGTTTAAATCTATTTCGTAAAAAAATATATACTCAGAAAATGAAGGTAGTTCTAATAAATTTGCGCAAAAAAAATATGTTGTTAAATGTGTTTAGTTTGTTAATACAAAGTATGCTTCTCTTTGATACACAATTATAAAATACAAGGATTTTTATCTCTTTGTTATTCCTTGTAAATAGTAGATGAACAATAGATGACACATGGTGTTAATATAATCTTTACAATAAAAAAATTGTAGACATGAGCATACTACTGATACATGTAGGTATATCAACCAAGGAATTATATATAAATCCTAAATAGATCCTAGGTGTCAAATATAAATATAAATGTATGAAGTTCATTGTTCATAATAGCACACATCTCATCATATAAAAACAGTATCTAAAGCAAGCACAGAAATGGAGAACTGATCACAAATACGCTGCTCCAGTATAAAAACGGTGCAATATACTGCCTCATTTATACTTTATTTTATTATTGCTTTCAATAATTTTCTTCATAAGAT
Unaligned ( gi|5 ): CGATGTCCAATATGTACTTTAAGCAAATCAACTTTATACCTCACTGGTGGGCAAATTAAACACTTGAGAACAGATAATAAAATGGAAAAAATATTTAAAAAAAACGTACGTCTATTATAAATTGTGAATCATATAATATAATCAGAATATGTGCCAAACTGTGATATGAAACTTTAAAACTTACGCGGAACAAAATTGTATAAATAAGGTTTAGGATATCGGTTAAATAACATATATTTAAAGTGTAACGATAAAATACATTTTATAATCTAGGTATAGTATTTTACTTGTATATAATTTATGTCCACAGCTGTAAAGATTGCTTTTATACTGCAACGGGTAAACTCGATTTGCGACATTGTCGTATACATCCCTTTAAATTGCTATGGCCCCCGAGACATTGATGTATATACACATATATCCATAATCAAGTTATCATTGACGAGGATGCTGTTAAAATCTGATAGTGCTTGTGAAAAACTATAAAAAGGACGAAAGTACTTAAAATATATTTCATAAAATATATACTCAGAAATTAAGACAATTTGTAATTAACTTGCGCAGAAAGAAAAATTATTATTCAATGTGT
Unaligned ( gi|16 ): CAACAATAACAATAACAATAACAACAGCAACAACAACAGCAATAATAATAGTAGCAATATTAATATCAAAAATATTAACAATTGTAAGATAATTATAATACCAATAATAGCAACAA
Unaligned ( gi|22 ): CACATTCACTTAACTTAATTATGCCCCGAGGCATTGGTGTATACTGAAAACTAGAATACACA
Unaligned ( gi|24 ): TACTATCAAGGACTTGTATCTATATTATTCCTTGGTAGTATGCAGTG
Unaligned ( gi|25 ): ATGCCCCGAGGCATTGGTGTATACTGAAAACTATAATACACAT
Alignments
lowQualScore : 22222222222222 111111111 222222222222 111111 111111 222222222222 111111 111111 111 222222 222222 11111111 1111 4444444444444444 666666666666666666 1111 111 1111 222222222222222
lowQualScore : 1 1 0 0 1 1 0 3 1 5 1 88 1 8 22222222222222 2 1 2 3 888 3 2 888 555555555 777 1 222222222222 777 777 111111 66 0 0 55 66 222222 0 555555555555 444444 888 777777 1 444 333333 1 1 333333 1 99999999 1 0 0 0000 1 0 1 3333333333333333 1 2 5 111111111111111111 1 777 3 0 777 0 5 1 1 2 1 1 4444 0 1 333 0 8 7777 1 0 1 555555555555555 0 1
lowQualScore : . . . . . . . . . . . .. . . .............. . . . . ... . . ... ......... ... . ............ ... ... ...... .. . . .. .. ...... . ............ ...... ... ...... . ... ...... . . ...... . ........ . . . .... . . . ................ . . . .................. . ... . . ... . . . . . . . .... . . ... . . .... . . . ............... . .
lowQualScore : 0 0 2 2 0 4 8 8 4 8 0 88 0 0 00000000000000 5 0 0 1 888 4 6 888 222222222 888 9 888888888888 000 000 555555 11 1 1 22 22 888888 1 111111111111 444444 888 444444 4 000 000000 4 4 000000 4 55555555 0 2 2 0000 0 8 0 3333333333333333 0 6 7 111111111111111111 6 888 9 1 222 9 0 7 0 2 4 0 2222 2 0 555 2 0 0000 4 8 0 000000000000000 8 4
consensus : AGCAGTAGCAGCAGCAGTAGTAGTAGCAGTAGAANTAGTAGTANCAGCAGCAGCAGCAGTAGNAGTAGTAGTATTGGTAGANGCGGNAGTAGTAGTAGTAGCA-GCGG----TAGC---CGTAGTAGTAGTAGTAGTAGTNTTGGCGGCGG---CAGTAGTAGCAGTAGTNGTAGTAGTAG---TAGT--A------GCAGCAGCAGCA---GCA------------GCAGTA---ATA---G------T--AGTAGTAGTA-GT-AGTAGT------AGTAG--T------AGNAGTAGCAG------CAGCAGCA---GCAGCGGT---AGTACT---AGTAGAAGTAGT------AGCAGCAGCAGCAGCAGT------AGTAGTAGTTGTAGTAGCAGCAGCAGCAGC---AG---CAGCAATANTATTATAAGTAGTAGCA-GNAATNG-----------CGGTGGTATNAGCAGTAGT-AG-CGTTTGACG-----G--TAGTAGAAGCAGCAGCAGCAG---CAGTAGTAGTAGCAGT--AGTAGTAGTAGT-AGTAGTGGTAGTNGCGGTAGTAGTNG----TAAGGTATGTTTACTTTCGTTGCCCCAAAATATTANAAATACCTACCTTTT-CAGA-AAAA----AATGGCGAAAATGTTAATAAGCCACACAGT-T-TT---T-ATACGATTACATGCCGGAACAGTATGT
Reference ( family-670 ) : AGCAGTAGCAGCAGCAGTAGTAGTAGCAGTAGAANTAGTAGTANCAGCAGCAGCAGCAGTAGNAGTAGTAGTATTGGTAGANGCGGNAGTAGTAGTAGTAGCA-GCAG----NAGC---CGTAGTAGTAGTAGTAGTAGTNTTGGCGGCGG---CAGTAGTAGCAGTAGTNGTAGTAGTAG---TAGT--A------GCAGCAGCAGCA---GCA------------GCAGTA---ATA---G------T--AGTAGTAGTA-GT-AGTAGT------AGTAG--T------AGTAGTAGCAG------CAGCAGCA---GCAGCGGT---AGTACT---AGTAGAAGTAGT------AGCAGCAGCAGCAGCAGT------AGTAGTAGTTGTAGTAGCAGCAGCAGCAGC---AG---CAGCAATANTATTATAAGTAGTAGCA-GNAATNG-----------CGGTGGTATNAGCAGTAGT-AG-CGTTTGACG-----G--TAGTAGAAGCAGCAGCAGCAG---CAGTAGTAGTAGCAGT--AGTAGTAGTAGT-AGTAGTGGTAGTNGCGGTAGTAGTNG----TAAGGTATGTTTACTTTCGTTGCCCCAAAATATTANAAATACCTACCTTTT-CAGA-AAAA----AATGGCGAAAATGTTAATAAGCCACACAGT-T-TT---T-A-ACGATTACATGCCGGAACAGTATGT
gi|1 : AGTAG-----------TGGTGGTATGAGCAGTAGT-AGTCATTTAA------------GTAAA-----C-GCATTAG---CAGTATTGGTTGCAGT--TGTAGTA-TA---AGTAGTTG-ACTCAAAGAAATTATTGCAATTAAGGTATGTTTACATTCGTTGCCCCAAAATATTAGAAATACCTACCTTT-----A-AAAA----AATGGCGAAAGTGTTAATAAGCCACACAGT-TGTT---T-ATATGATTACATGCCGGAACAGTATGT
gi|10 : atGCAGCAG---CAGTAGTA-CA--AGTAGTAGAACCAG---TAGT--A------GAAGCAGCAGCA---ACA------------GCAGTA---ATA---G------T--AGTTGTAGTA-CT-AGAAGTTTCTTCAGCAG--C------AGCAGTAGCAG------AAGGAGAATGCGCAGTAGC---AGCAGT---AGTAGCAACAGT------AGTAGCAGCAGTACTAGA------AGTAGAAGTTGTAGTAGCAGCAGCAGCAAC---AA----NNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNN-----------NNNNNNNNNNNNNNNNNNN-NN-NNNNNNNNN-----N--NNNNNNNNNNNNCAGCAGCAG---CCGTATTACTAGGAGT--AGTACCAGTctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttcccctcgtcacagactgtggggcaatgtgggataacagaaggtagtatcgatgtccaatatgtactttaagaaaatccactttatacctcattgatggacaaattaaacatttgacaacagataataaaatcgaaaatcgaaataatatttttaaaaatgtacgtctacaataaattgcgaatcatatcatatcctatattaagaatgtgtgccaaactgtgctatgaaactttaaaacttataacaaaattgtataaggtttaggatatcggttaaagtacatatatttaaagtgtaacgataaaatacattctataatctaagtatactattttactggtccacagatgtaaagagtgcttttatactggaatgggtaagctcaatttgcgacattgtcgtatatatccctttaaattgatatggcctcgagacattgatatactgataataaaaatacacatatatcaataatcaagttatcatttacgaggatgctcttaaaatctgatagtgcttatgaaaaactataaaaaggacgaaaatactaaatatatttcataaaaaaaaatataatcagaaattaagacaatttgtcattaacttgcgcagaaataaaattctttattaaatgtgtttagttaaaaaaata
gi|11 : ATTATTATAAGTAGTAGCAAGGACTTGTCTATATAATTCCTTGGTAGTAGCAGTAGT-GT-TGTTAGAAGAAGTAG--TAGTAGTAGCAGCAGCAGCAG---TAGCAGTAATAGTAGT--ATTAGTAGTAGC-AGCAGAAGCAGTAGCAATAGCAATAG----CAA
gi|11 : agttgtattatcGTAGTAGCAGTAGTGTTGTTAGAAG---AAGTAGTAGTAGTAGCA-GCAG----CAGC------AGTAGCAGTAATAGTAGTATTAGTAGTAG---CAGCAGAAGCAGTAGCAATAGCAATAG---CAAC--C------ACAACAGCAGCA---GCA------------GTAGTA---GTA---A------T--AGCAGTAGTA-GT-AGTCGT------AATAT--T------AAAAGTAGCAA------CAGCAGCA---GCAGccacaacagcagcagcagtagtagtaatagcagtagtagtagtcgtaatattaaaagtagcaacagcagcagcag
gi|12 : agttgtattatcattattataagtagtagcaaggacttgtctatataattccttgGGAAGTAATAGTAGTAGCA-GTGA----TAGT---GGTGGTGGTGGTTGTATTGATGTTGGTGGTAG---CAGTTATATCAGCA---ATAGCAGTAG---CATC--A------GCAGCAGTAGCA---AAA------------GCAGTA---TCA---G------T--A-TAG
gi|13 : ggtagataagttttgtactgttcttaaaatagacattCAGCGA---TAGTAGTAAAAGTAGTAGTAGTAATAA---TAGC--A------GCAGCAGCAGTA---GAA------------ACAGTA---TTA---GTCATGCT--GGTAGTATTA-GT-CGTATT------AGTAG--TTCTCACATTAGTAGTCG------CAGTGGTA---TCAGTGGT---AATACT---AATAag
gi|14 : tAGAA---ATG---G------T--GTTTGTGGTG-AT-AGTAGT------AGAAGACT------TCTACT-GCTG------CTGCTGCT---ACAAC--------TACT---ACTTGAAGTGGT------AGTAATAGCAGCAGCAGC------AGTAGTAGTTGTAGTAATTGCAGCAGCAGatgactatact
gi|15 : AGTTATAAT-AGCAGTGGTAGTAGCAGCAGTACTAG----TAaa
gi|15 : cagcatgagttgtttttacataAGCAGTGGTAGTAGCAGCAGTACTAGTAGTAACTGTAGCAAAATCAGTAGCAATAGCAATATCGGT-GCTGCTACAGCAGTAGTAATAgtaactgtagcaaaatcagtagcaatagcaatatcggtgctgctacagcagtagtaata
gi|17 : cagcatgagttgtttttacataagttataatAGCAACAGCAGCAG---TAGTATTAGTAGCAGT--AGTAGAAGTAGT-GGTGGTGGTCGTTGTGGTGGTGGTGG----T--GGAACGTTAACTGTCTTTG
gi|18 : t------AGCAGCAGCAGCAGAAGT------AGTAGTAGTAGTAGTAGCAGCAGCAGCAGC---AGGAACATCAATCATATtaattcctctgatatat
gi|19 : TATATACGGTAGT-AG-----TAGTG-----G--TAGTAGAAGGAGTAGCAGCAG---CAGCAGCAGCAACAagaaccatcatataactattaacatatcataaa
gi|19 : tatactgtcattgttatatattacttttgtggaaaatGTAGTA-GT-AGTGGT------AGTAG--A------AGGAGTAGCAG------CAGCAGCA---GCAGC
gi|2 : tatactgtcattgttatatattacttttgtggaaaattatatacgTTCGTTGCCTCAAAACATTAAAAATCCCTACCTTTTATAAA-AAAAAAATAATGGCCAAAATGTTAGTAAGCCACACCGA-T-TTATAT-A-ATG-TTACATGCCGGAACAATATGTaaca
gi|20 : TAGTAGTAGTAGTAGTAGTGGTGGTGGTGG---TTATGGTGGTAGTAGTGGTAATAATAA---TAGT--A------GCAGTAGCATCA---GCA------------GCAGCG---GTA---G------ctaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttcccttcgtaacaggctgtgggacaatataaggtagcgtctgtgtccaatatgttttttaagaatatccactttattcttaacagatgggcaaactaaacacttgagaacagataataaaacggaaataatattttataaaacgtacgtctataataaattgcgaatcatatcatataatcacattatgtgccgaactttgctttgaaactttaaaacttacgcggaacaaattgtataaataatgtataggatatctgtttaagtacaaatatttaaagtgtaacgataaaatacagtttataatctaggtatactatgttctggttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgttatgacctcgaggcattgatgtatactgataaaaaacacataaagtcataatta
gi|21 : GTAGTA---GAA------------GCAGTC---ACC---G------T--CGTTGTCGTC-AT-AGTAAT------AGTAG--T------AGTAATAGTAG------AAGCAGTA---G
gi|23 : CAACAGCAG---AAGTAGGA-TAGCAGT--AGTAGTAGTGGT-GGTGGTGGTGGTGGTGGTAGTA
gi|3 : tatA-AAAA----AATGACGGAATTGTTAATAAGCCATACATT-T-TT---T-ATACGATTACATGCCGGAACAGTATGT
gi|6 : tAGCAGTAGCAGCAGCAATAGTACTAGAAGTAAAAGTAGTGGTAACAGCAGCAGCAGCAATAGTAGTTGTAGTATTGATNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN----NNNN---CGTACTAGTTGTAGTAGTAGTTTTAGCAGCAG---CAATAGTAGAAGTAGTTATAGTAGTAT---TAGT--AACAGCAGCAGCAGCAACA---GTAATAGTAGTAGTAGTAGTA---ATATTAG------T--AGTAGTA-T------------------------------------TAACAG------CAGTAGCA---GCAACAAT---AGTTCTGGAAGTAGAAATAGTCGTTACAGCAGCAGCAGCAGCAGT------AGTAGTAGTTGTATTAACAGCAGCAGCAGC---AG---CAGCAACNNNNNNNNNNNNNNNNNNN-NNNNNNN-----------NNNNNNNNNNNNNNNNNNN-NN-NNNNNNNNN-----NNTTAACAGCAGCAGCAGCAGCAA---CAACAGTAGTTGTAGT--AATAGAAATAGT-AATAGTGGTAGTTGTGGTATTAGTTG----TAAAGTATGTTTACTTTCGTTGCCCCAATATATTATAAATACCTATCTTTT-CAGA-AAGA----AATGGCAAAAAAGCTAA---------------------T-A-ACGATTACATGCCGGAATTGTATGTctaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttcattcccctcatcacatgctgtgagcaatgtgggatgacagaaggtagtatcgatgttcaatttgtacttaaagaaaattcactttatacctcactgattggcaaattaaacacttgagaacagataataaaatggaaataatattttaaaagacttacgtctataataaattgcgaatcatattatgtaatcagaatatgagccaaactgtactataagacttacgcagaacaaaattgtataaataatgttgaggatatcggtaaaagtacatacatttaaagtgtaacgataaaatacattttataatctaggtatacgtttctactggtatagaatttatttccacagctgtaaagattcctggactaactggaacaggtaaactcgatttgcgacattgtcgtatacatccttttaaattgctatggcccccgagacattgatgtatactgataacaaaaatacacatatatccataatcaagttatcatttaggaggatactc
gi|7 : G---CAGTAATACTTTTATAAGTTGTA--A-AAAATAG-----------AG------TTA-CAGTGGT-AG-------A-G-----A--TAGT-GAAACAGCTGCAGCAT---AAGTGGTAGTAATGGTGTAGTAGTAGTAGTAAGTAGT
gi|7 : tgcAGTTACAGTGGTAGAGATAGTGAA------ACAGCTGCAGCATAAGTG------------GTAGTA---ATG---G------TGTAGTAGTAGTA-GTAAGTAGT------A-TAG--G------AAAAGAAGAAGAAAAGATAGTTGTT---GTTGTGGTGTAAATAAT---AGTATAAGTAGT------AGGAACAATAACAGTAGTATAAAAAGCAATAGTAGTATTAGCAGCAACAACACCTTGGG---CAGCAATATAATTATAAATATAAGTA-GCAATTA-----------TTGTCGTATCAGAAGCAATGAG-TGCCTGACG-----GA-CAGCGAAAGCGACAGCAGCTGATTC--TA-CAGTGACAGT----TTGTAAAAGT-GGCAGTGataggaaaagaagaagaaaagatagttgttgttgtggtgtaaataatagtataagtagtaggaacaataacagtagtataaaaagcaatagtagtattagcagcaacaacaccttgggcagcaatataattataaatataagtagcaattattgtcgtatcagaagcaatgagtgcctgacggacagcgaaagcgacagcagctgattctacagtgacagtttgtaaaagtggcagtg
gi|8 : tgcgcagtaatacttttataagttgtaaaaaatagAGTAGTAGCAGTAGAAATAGTAGTATCATAAGTAGCAGCAGTAGATGTAGT--TAT-GATAAAAGTGGGAGTAGTAGTAATAACA-GCAG----TAGC---CAAAGCAGTAGCAGTAGTAGTATCAGAAGCAGTATCAGTAGCAACAGTAGATGCAGTGGTAA---TAGT--A------GTAGCAGTAGCA---ACA------------GCAATATCCATA---G------T--AAAAGTAATATGT--GTAGT------AGCAG--T------A
gi|9 : tactcttaattaaaatattatggtataatcaccattataatcaatatattactgttattgttattatatactattattgttatgtttagtattatcattatatttattattacaTATCAGCAGTGGTCGTAATAGAAGTTGTAGTAGTGGTGAAGGTGGTGGTGGTAGTAGTAGTATGT-GTTTTTAGTTTACGTA-TCGTAGTAGAAGTAGTCGTGGCAGTTA---CAGCAATAGCGGTTGTTGTAATAG
gi|9 : ----TAATGTATGTTTATTTTTGTTGCCCCAGAATATAACGAATACCTATCTTTT-CAGATAAAA----AATGGCAAAAATGTTAATAAGCCACTCAGTGT-TT---TAA-ACGATTACATGCCGGAACTGCATGTaatctaatgccctttaaatattttgcctcaaagtaaacatcgcaattaatgtatgtttatttttgttgccccagaatataacgaatacctatcttttcagataaaaaatggcaaaaatgttaataagccactcagtgttttaaacgattacatgccggaactgcatgtc
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): TTGTTATGACCCCGAAGCATTGATCTAAACTGATAACAAGAATACAAATACAGTCATCATCAAATAATCACTTACAAGAATGCTCAAAAAATCTGATGGTGCTTCTGGCAAACTGTAAAAAGGATCAAATGTTTAAATCTATTTCGTAAAAAAATATATACTCAGAAAATGAAGGTAGTTCTAATAAATTTGCGCAAAAAAAATATGTTGTTAAATGTGTTTAGTTTGTTAATACAAAGTATGCTTCTCTTTGATACACAATTATAAAATACAAGGATTTTTATCTCTTTGTTATTCCTTGTAAATAGTAGATGAACAATAGATGACACATGGTGTTAATATAATCTTTACAATAAAAAAATTGTAGACATGAGCATACTACTGATACATGTAGGTATATCAACCAAGGAATTATATATAAATCCTAAATAGATCCTAGGTGTCAAATATAAATATAAATGTATGAAGTTCATTGTTCATAATAGCACACATCTCATCATATAAAAACAGTATCTAAAGCAAGCACAGAAATGGAGAACTGATCACAAATACGCTGCTCCAGTATAAAAACGGTGCAATATACTGCCTCATTTATACTTTATTTTATTATTGCTTTCAATAATTTTCTTCATAAGAT
Unaligned ( gi|5 ): CGATGTCCAATATGTACTTTAAGCAAATCAACTTTATACCTCACTGGTGGGCAAATTAAACACTTGAGAACAGATAATAAAATGGAAAAAATATTTAAAAAAAACGTACGTCTATTATAAATTGTGAATCATATAATATAATCAGAATATGTGCCAAACTGTGATATGAAACTTTAAAACTTACGCGGAACAAAATTGTATAAATAAGGTTTAGGATATCGGTTAAATAACATATATTTAAAGTGTAACGATAAAATACATTTTATAATCTAGGTATAGTATTTTACTTGTATATAATTTATGTCCACAGCTGTAAAGATTGCTTTTATACTGCAACGGGTAAACTCGATTTGCGACATTGTCGTATACATCCCTTTAAATTGCTATGGCCCCCGAGACATTGATGTATATACACATATATCCATAATCAAGTTATCATTGACGAGGATGCTGTTAAAATCTGATAGTGCTTGTGAAAAACTATAAAAAGGACGAAAGTACTTAAAATATATTTCATAAAATATATACTCAGAAATTAAGACAATTTGTAATTAACTTGCGCAGAAAGAAAAATTATTATTCAATGTGT
Unaligned ( gi|16 ): CAACAATAACAATAACAATAACAACAGCAACAACAACAGCAATAATAATAGTAGCAATATTAATATCAAAAATATTAACAATTGTAAGATAATTATAATACCAATAATAGCAACAA
Unaligned ( gi|22 ): CACATTCACTTAACTTAATTATGCCCCGAGGCATTGGTGTATACTGAAAACTAGAATACACA
Unaligned ( gi|24 ): TACTATCAAGGACTTGTATCTATATTATTCCTTGGTAGTATGCAGTG
Unaligned ( gi|25 ): ATGCCCCGAGGCATTGGTGTATACTGAAAACTATAATACACAT
Alignments
lowQualScore : 2222222222222 111111 111111 111111 11111 111111 111111 111 222222 222222 11111111 1111 4444444444444444 666666666666666666 1111 111 1111 1111111
lowQualScore : 1 1 0 0 1 1 0 3 1 5 1 3 1 8 5555555555555 2 1 2 3 888 3 2 888 66 777 0 7777 222222 66 4 55 222222 222222 1 22222 66 444444 888 777777 1 444 333333 1 1 333333 1 99999999 1 0 0 0000 1 0 1 3333333333333333 1 2 5 111111111111111111 1 777 3 0 777 0 5 1 1 2 1 1 4444 0 1 333 0 8 7777 1 0 1 6666666 1 1 1
lowQualScore : . . . . . . . . . . . . . . ............. . . . . ... . . ... .. ... . .... ...... .. . .. ...... ...... . ..... .. ...... ... ...... . ... ...... . . ...... . ........ . . . .... . . . ................ . . . .................. . ... . . ... . . . . . . . .... . . ... . . .... . . . ....... . . .
lowQualScore : 0 0 2 2 0 4 8 8 4 8 0 6 0 0 4444444444444 5 0 0 1 888 4 6 888 99 888 1 9999 888888 99 4 22 888888 888888 0 55555 99 444444 888 444444 4 000 000000 4 4 000000 4 55555555 0 2 2 0000 0 8 0 3333333333333333 0 6 7 111111111111111111 6 888 9 1 222 9 0 7 0 2 4 0 2222 2 0 555 2 0 0000 4 8 0 2222222 0 0 4
consensus : AGCAGTAGCAGCAGCAGTAGTAGTAGCAGTAGAANTAGTAGTANCAGCAGCAGCAGCAGTAGNAGTAGTAGTATTGGTAGANGCGGNAGTAGTAGTAGTAGCA-GCG---NTAGC---CGTAGTAGTAGTAGTAGTAGTNTTGGCGGCGG---CAGTAGTAGCAGTAGTNGTAGTAGTAG---TAGT--AGCAGCAGCAGCA---GCAGCAGTA---ATAG------T--AGTAGTAGTA-GT-AGTAGT------AGTAGT------AGNAG-----TA--GCAG------CAGCAGCA---GCAGCGGT---AGTACT---AGTAGAAGTAGT------AGCAGCAGCAGCAGCAGT------AGTAGTAGTTGTAGTAGCAGCAGCAGCAGC---AG---CAGCAATANTATTATAAGTAGTAGCA-GNAATNG-----------CGGTGGTATNAGCAGTAGT-AG-CGTTTGACG-----G--TAGTAGAAGCAGCAGCAGCAG---CAGTAGTAGTAGCAGT--AGTAGTAGTAGT-AGTAGTGGTAGTNGCGGTAGTAGTNG----TAAGGTATGTTTACTTTCGTTGCCCCAAAATATTANAAATACCTACCTTTT-CAGA-AAAA----AATGGCGAAAATGTTAATAAGCCACACAG-T-T-TTTATACGATTACATGCCGGAACAGTATGT
Reference ( family-670 ) : AGCAGTAGCAGCAGCAGTAGTAGTAGCAGTAGAANTAGTAGTANCAGCAGCAGCAGCAGTAGNAGTAGTAGTATTGGTAGANGCGGNAGTAGTAGTAGTAGCA-GCG---GTAGC---CGTAGTAGTAGTAGTAGTAGTNTTGGCGGCGG---CAGTAGTAGCAGTAGTNGTAGTAGTAG---TAGT--AGCAGCAGCAGCA---GCAGCAGTA---ATAG------T--AGTAGTAGTA-GT-AGTAGT------AGTAGT------AGNAG-----TA--GCAG------CAGCAGCA---GCAGCGGT---AGTACT---AGTAGAAGTAGT------AGCAGCAGCAGCAGCAGT------AGTAGTAGTTGTAGTAGCAGCAGCAGCAGC---AG---CAGCAATANTATTATAAGTAGTAGCA-GNAATNG-----------CGGTGGTATNAGCAGTAGT-AG-CGTTTGACG-----G--TAGTAGAAGCAGCAGCAGCAG---CAGTAGTAGTAGCAGT--AGTAGTAGTAGT-AGTAGTGGTAGTNGCGGTAGTAGTNG----TAAGGTATGTTTACTTTCGTTGCCCCAAAATATTANAAATACCTACCTTTT-CAGA-AAAA----AATGGCGAAAATGTTAATAAGCCACACAG-T-T-TTTATACGATTACATGCCGGAACAGTATGT
gi|1 : AGTAG-----------TGGTGGTATGAGCAGTAGT-AGTCATTTAA------------GTAAA-----C-GCATTAG---CAGTATTGGTTGCAGT--TGTAGTA-TA---AGTAGTTG-ACTCAAAGAAATTATTGCAATTAAGGTATGTTTACATTCGTTGCCCCAAAATATTAGAAATACCTACCTTT-----A-AAAA----AATGGCGAAAGTGTTAATAAGCCACACAG-T-TGTTTATATGATTACATGCCGGAACAGTATGT
gi|10 : atGCAGCAG---CAGTAGTA-CA--AGTAGTAGAACCAG---TAGT--AGAAGCAGCAGCA---ACAGCAGTA---ATAG------T--AGTTGTAGTA-CT-AGAAGTTTCTTCAGCAGC------AGCAG-----TA--GCAG------AAGGAGAATGCGCAGTAGC---AGCAGT---AGTAGCAACAGT------AGTAGCAGCAGTACTAGA------AGTAGAAGTTGTAGTAGCAGCAGCAGCAAC---AA----NNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNN-----------NNNNNNNNNNNNNNNNNNN-NN-NNNNNNNNN-----N--NNNNNNNNNNNNCAGCAGCAG---CCGTATTACTAGGAGT--AGTACCAGTctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttcccctcgtcacagactgtggggcaatgtgggataacagaaggtagtatcgatgtccaatatgtactttaagaaaatccactttatacctcattgatggacaaattaaacatttgacaacagataataaaatcgaaaatcgaaataatatttttaaaaatgtacgtctacaataaattgcgaatcatatcatatcctatattaagaatgtgtgccaaactgtgctatgaaactttaaaacttataacaaaattgtataaggtttaggatatcggttaaagtacatatatttaaagtgtaacgataaaatacattctataatctaagtatactattttactggtccacagatgtaaagagtgcttttatactggaatgggtaagctcaatttgcgacattgtcgtatatatccctttaaattgatatggcctcgagacattgatatactgataataaaaatacacatatatcaataatcaagttatcatttacgaggatgctcttaaaatctgatagtgcttatgaaaaactataaaaaggacgaaaatactaaatatatttcataaaaaaaaatataatcagaaattaagacaatttgtcattaacttgcgcagaaataaaattctttattaaatgtgtttagttaaaaaaata
gi|11 : ATTATTATAAGTAGTAGCAAGGACTTGTCTATATAATTCCTTGGTAGTAGCAGTAGT-GT-TGTTAGAAGAAGTAG--TAGTAGTAGCAGCAGCAGCAG---TAGCAGTAATAGTAGT--ATTAGTAGTAGC-AGCAGAAGCAGTAGCAATAGCAATAG----CAA
gi|11 : agttgtattatcGTAGTAGCAGTAGTGTTGTTAGAAGAAGTAGTAGTAGTAGCAGCA-GC------AGC------AGTAGCAGTAATAGTAGTATTAGTAGTAG---CAGCAGAAGCAGTAGCAATAGCAATAG---CAAC--CACAACAGCAGCA---GCAGTAGTA---GTAA------T--AGCAGTAGTA-GT-AGTCGT------AATATT------AAAAG-----TA--GCAA------CAGCAGCA---GCAGccacaacagcagcagcagtagtagtaatagcagtagtagtagtcgtaatattaaaagtagcaacagcagcagcag
gi|12 : agttgtattatcattattataagtagtagcaaggacttgtctatataattccttgGGAAGTAATAGTAGTAGCA-GTG---ATAGT---GGTGGTGGTGGTTGTATTGATGTTGGTGGTAG---CAGTTATATCAGCA---ATAGCAGTAG---CATC--AGCAGCAGTAGCA---AAAGCAGTA---TCAG------T--A-TAG
gi|13 : ggtagataagttttgtactgttcttaaaatagacattCAGCGA---TAGTAGTAAAAGTAGTAGTAGTAATAA---TAGC--AGCAGCAGCAGTA---GAAACAGTA---TTAGTCATGCT--GGTAGTATTA-GT-CGTATT------AGTAGTTCTCACATTAG-----TA--GTCG------CAGTGGTA---TCAGTGGT---AATACT---AATAag
gi|14 : t-GT-GGTGAT------AGTAGT------AGAAGACTTCTACTGCTG------CTGCTGCT---ACAAC--------TACT---ACTTGAAGTGGT------AGTAATAGCAGCAGCAGC------AGTAGTAGTTGTAGTAATTGCAGCAGCAGatgactatact
gi|15 : agaaatggtgtttAGTTATAAT-AGCAGTGGTAGTAGCAGCAGTACTAG----TAaa
gi|15 : cagcatgagttgtttttacataAGCAGTGGTAGTAGCAGCAGTACTAGTAGTAACTGTAGCAAAATCAGTAGCAATAGCAATATCGGT-GCTGCTACAGCAGTAGTAATAgtaactgtagcaaaatcagtagcaatagcaatatcggtgctgctacagcagtagtaata
gi|17 : cagcatgagttgtttttacataagttataatAGCAACAGCAGCAG---TAGTATTAGTAGCAGT--AGTAGAAGTAGT-GGTGGTGGTCGTTGTGGTGGTGGTGG----T--GGAACGTTAACTGTCTTTG
gi|18 : t------AGCAGCAGCAGCAGAAGT------AGTAGTAGTAGTAGTAGCAGCAGCAGCAGC---AGGAACATCAATCATATtaattcctctgatatat
gi|19 : TATATACGGTAGT-AG-----TAGTG-----G--TAGTAGAAGGAGTAGCAGCAG---CAGCAGCAGCAACAagaaccatcatataactattaacatatcataaa
gi|19 : tatactgtcattgttatatattacttttgtggaaaatGTAGTA-GT-AGTGGT------AGTAGA------AGGAG-----TA--GCAG------CAGCAGCA---GCAGC
gi|2 : tatactgtcattgttatatattacttttgtggaaaattatatacgTTCGTTGCCTCAAAACATTAAAAATCCCTACCTTTTATAAA-AAAAAAATAATGGCCAAAATGTTAGTAAGCCACACCGAT-T-TATATAATGTTACATGCCGGAACAATATGTaaca
gi|20 : TAGTAGTAGTAGTAGTAGTGGTGGTGGTGG---TTATGGTGGTAGTAGTGGTAATAATAA---TAGT--AGCAGTAGCATCA---GCAGCAGCG---GTAG------ctaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttcccttcgtaacaggctgtgggacaatataaggtagcgtctgtgtccaatatgttttttaagaatatccactttattcttaacagatgggcaaactaaacacttgagaacagataataaaacggaaataatattttataaaacgtacgtctataataaattgcgaatcatatcatataatcacattatgtgccgaactttgctttgaaactttaaaacttacgcggaacaaattgtataaataatgtataggatatctgtttaagtacaaatatttaaagtgtaacgataaaatacagtttataatctaggtatactatgttctggttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgttatgacctcgaggcattgatgtatactgataaaaaacacataaagtcataatta
gi|21 : GTAGTA---GAAGCAGTC---ACCG------T--CGTTGTCGTC-AT-AGTAAT------AGTAGT------AGTAA-----TA--GTAG------AAGCAGTA---G
gi|23 : CAACAGCAG---AAGTAGGA-TAGCAGT--AGTAGTAGTGGT-GGTGGTGGTGGTGGTGGTAGTA
gi|3 : tatA-AAAA----AATGACGGAATTGTTAATAAGCCATACAT-T-T-TTTATACGATTACATGCCGGAACAGTATGT
gi|6 : tAGCAGTAGCAGCAGCAATAGTACTAGAAGTAAAAGTAGTGGTAACAGCAGCAGCAGCAATAGTAGTTGTAGTATTGATNNNNNNNNNNNNNNNNNNNNNNNNN-NNN---NNNNN---CGTACTAGTTGTAGTAGTAGTTTTAGCAGCAG---CAATAGTAGAAGTAGTTATAGTAGTAT---TAGT--AACAGCAGCAGCA---GCAACAGTA---ATAG------T--AGTAGTAGTA-GT-AATATT------AGTAGT------AGTAT-----TA--ACAG------CAGTAGCA---GCAACAAT---AGTTCTGGAAGTAGAAATAGTCGTTACAGCAGCAGCAGCAGCAGT------AGTAGTAGTTGTATTAACAGCAGCAGCAGC---AG---CAGCAACNNNNNNNNNNNNNNNNNNN-NNNNNNN-----------NNNNNNNNNNNNNNNNNNN-NN-NNNNNNNNN-----NNTTAACAGCAGCAGCAGCAGCAA---CAACAGTAGTTGTAGT--AATAGAAATAGT-AATAGTGGTAGTTGTGGTATTAGTTG----TAAAGTATGTTTACTTTCGTTGCCCCAATATATTATAAATACCTATCTTTT-CAGA-AAGA----AATGGCAAAAAAGCTAATA--------------------ACGATTACATGCCGGAATTGTATGTctaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttcattcccctcatcacatgctgtgagcaatgtgggatgacagaaggtagtatcgatgttcaatttgtacttaaagaaaattcactttatacctcactgattggcaaattaaacacttgagaacagataataaaatggaaataatattttaaaagacttacgtctataataaattgcgaatcatattatgtaatcagaatatgagccaaactgtactataagacttacgcagaacaaaattgtataaataatgttgaggatatcggtaaaagtacatacatttaaagtgtaacgataaaatacattttataatctaggtatacgtttctactggtatagaatttatttccacagctgtaaagattcctggactaactggaacaggtaaactcgatttgcgacattgtcgtatacatccttttaaattgctatggcccccgagacattgatgtatactgataacaaaaatacacatatatccataatcaagttatcatttaggaggatactc
gi|7 : G---CAGTAATACTTTTATAAGTTGTA--A-AAAATAG-----------AG------TTA-CAGTGGT-AG-------A-G-----A--TAGT-GAAACAGCTGCAGCAT---AAGTGGTAGTAATGGTGTAGTAGTAGTAGTAAGTAGT
gi|7 : tgcAGTTACAGTGGTAGAGATAGTGAAACAGCTGCAGCATAAGTGGTAGTA---ATGG------TGTAGTAGTAGTA-GTAAGTAGT------A-TAGG------AAAAG-----AA--GAAGAAAAGATAGTTGTT---GTTGTGGTGTAAATAAT---AGTATAAGTAGT------AGGAACAATAACAGTAGTATAAAAAGCAATAGTAGTATTAGCAGCAACAACACCTTGGG---CAGCAATATAATTATAAATATAAGTA-GCAATTA-----------TTGTCGTATCAGAAGCAATGAG-TGCCTGACG-----GA-CAGCGAAAGCGACAGCAGCTGATTC--TA-CAGTGACAGT----TTGTAAAAGT-GGCAGTGataggaaaagaagaagaaaagatagttgttgttgtggtgtaaataatagtataagtagtaggaacaataacagtagtataaaaagcaatagtagtattagcagcaacaacaccttgggcagcaatataattataaatataagtagcaattattgtcgtatcagaagcaatgagtgcctgacggacagcgaaagcgacagcagctgattctacagtgacagtttgtaaaagtggcagtg
gi|8 : tgcgcagtaatacttttataagttgtaaaaaatagAGTAGTAGCAGTAGAAATAGTAGTATCATAAGTAGCAGCAGTAGATGTAGT--TAT-GATAAAAGTGGGAGTAGTAGTAATAACA-GCA---GTAGC---CAAAGCAGTAGCAGTAGTAGTATCAGAAGCAGTATCAGTAGCAACAGTAGATGCAGTGGTAA---TAGT--AGTAGCAGTAGCA---ACAGCAATATCCATAG------T--AAAAGTAATATGT--GTAGT------AGCAGT------A
gi|9 : tactcttaattaaaatattatggtataatcaccattataatcaatatattactgttattgttattatatactattattgttatgtttagtattatcattatatttattattacaTATCAGCAGTGGTCGTAATAGAAGTTGTAGTAGTGGTGAAGGTGGTGGTGGTAGTAGTAGTATGTGTTTTTAGTTTACGTA-TCGTAGTAGAAGTAGTCGTGGCAGTTA---CAGCAATAGCGGTTGTTGTAATAG
gi|9 : ----TAATGTATGTTTATTTTTGTTGCCCCAGAATATAACGAATACCTATCTTTT-CAGATAAAA----AATGGCAAAAATGTTAATAAGCCACTCAG-TGT-TTTAAACGATTACATGCCGGAACTGCATGTaatctaatgccctttaaatattttgcctcaaagtaaacatcgcaattaatgtatgtttatttttgttgccccagaatataacgaatacctatcttttcagataaaaaatggcaaaaatgttaataagccactcagtgttttaaacgattacatgccggaactgcatgtc
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): TTGTTATGACCCCGAAGCATTGATCTAAACTGATAACAAGAATACAAATACAGTCATCATCAAATAATCACTTACAAGAATGCTCAAAAAATCTGATGGTGCTTCTGGCAAACTGTAAAAAGGATCAAATGTTTAAATCTATTTCGTAAAAAAATATATACTCAGAAAATGAAGGTAGTTCTAATAAATTTGCGCAAAAAAAATATGTTGTTAAATGTGTTTAGTTTGTTAATACAAAGTATGCTTCTCTTTGATACACAATTATAAAATACAAGGATTTTTATCTCTTTGTTATTCCTTGTAAATAGTAGATGAACAATAGATGACACATGGTGTTAATATAATCTTTACAATAAAAAAATTGTAGACATGAGCATACTACTGATACATGTAGGTATATCAACCAAGGAATTATATATAAATCCTAAATAGATCCTAGGTGTCAAATATAAATATAAATGTATGAAGTTCATTGTTCATAATAGCACACATCTCATCATATAAAAACAGTATCTAAAGCAAGCACAGAAATGGAGAACTGATCACAAATACGCTGCTCCAGTATAAAAACGGTGCAATATACTGCCTCATTTATACTTTATTTTATTATTGCTTTCAATAATTTTCTTCATAAGAT
Unaligned ( gi|5 ): CGATGTCCAATATGTACTTTAAGCAAATCAACTTTATACCTCACTGGTGGGCAAATTAAACACTTGAGAACAGATAATAAAATGGAAAAAATATTTAAAAAAAACGTACGTCTATTATAAATTGTGAATCATATAATATAATCAGAATATGTGCCAAACTGTGATATGAAACTTTAAAACTTACGCGGAACAAAATTGTATAAATAAGGTTTAGGATATCGGTTAAATAACATATATTTAAAGTGTAACGATAAAATACATTTTATAATCTAGGTATAGTATTTTACTTGTATATAATTTATGTCCACAGCTGTAAAGATTGCTTTTATACTGCAACGGGTAAACTCGATTTGCGACATTGTCGTATACATCCCTTTAAATTGCTATGGCCCCCGAGACATTGATGTATATACACATATATCCATAATCAAGTTATCATTGACGAGGATGCTGTTAAAATCTGATAGTGCTTGTGAAAAACTATAAAAAGGACGAAAGTACTTAAAATATATTTCATAAAATATATACTCAGAAATTAAGACAATTTGTAATTAACTTGCGCAGAAAGAAAAATTATTATTCAATGTGT
Unaligned ( gi|16 ): CAACAATAACAATAACAATAACAACAGCAACAACAACAGCAATAATAATAGTAGCAATATTAATATCAAAAATATTAACAATTGTAAGATAATTATAATACCAATAATAGCAACAA
Unaligned ( gi|22 ): CACATTCACTTAACTTAATTATGCCCCGAGGCATTGGTGTATACTGAAAACTAGAATACACA
Unaligned ( gi|24 ): TACTATCAAGGACTTGTATCTATATTATTCCTTGGTAGTATGCAGTG
Unaligned ( gi|25 ): ATGCCCCGAGGCATTGGTGTATACTGAAAACTATAATACACAT
Alignments
lowQualScore : 2222222222222 111111 111111 111111 11111 111111 111111 111 222222 222222 11111111 1111 4444444444444444 666666666666666666 1111 111 1111 1111111
lowQualScore : 1 1 0 0 1 1 0 3 1 5 1 3 1 8 3333333333333 2 1 2 3 888 3 2 888 66 777 0 7777 222222 66 4 55 222222 222222 1 22222 66 444444 888 777777 1 444 333333 1 1 333333 1 99999999 1 0 0 0000 1 0 1 3333333333333333 1 2 5 111111111111111111 1 777 3 0 777 0 5 1 1 2 1 1 4444 0 1 333 0 8 7777 1 0 1 6666666 1 1 1
lowQualScore : . . . . . . . . . . . . . . ............. . . . . ... . . ... .. ... . .... ...... .. . .. ...... ...... . ..... .. ...... ... ...... . ... ...... . . ...... . ........ . . . .... . . . ................ . . . .................. . ... . . ... . . . . . . . .... . . ... . . .... . . . ....... . . .
lowQualScore : 0 0 2 2 0 4 8 8 4 8 0 6 0 0 8888888888888 5 0 0 1 888 4 6 888 99 888 1 9999 888888 99 4 22 888888 888888 0 55555 99 444444 888 444444 4 000 000000 4 4 000000 4 55555555 0 2 2 0000 0 8 0 3333333333333333 0 6 7 111111111111111111 6 888 9 1 222 9 0 7 0 2 4 0 2222 2 0 555 2 0 0000 4 8 0 2222222 0 0 4
consensus : AGCAGTAGCAGCAGCAGTAGTAGTAGCAGTAGAANTAGTAGTANCAGCAGCAGCAGCAGTAGNAGTAGTAGTATTGGTAGANGCGGNAGTAGTAGTAGTAGCA-GCG---NTAGC---CGTAGTAGTAGTAGTAGTAGTNTTGGCGGCGG---CAGTAGTAGCAGTAGTNGTAGTAGTAG---TAGT--AGCAGCAGCAGCA---GCAGCAGTA---ATAG------T--AGTAGTAGTA-GT-AGTAGT------AGTAGT------AGNAG-----TA--GCAG------CAGCAGCA---GCAGCGGT---AGTACT---AGTAGAAGTAGT------AGCAGCAGCAGCAGCAGT------AGTAGTAGTTGTAGTAGCAGCAGCAGCAGC---AG---CAGCAATANTATTATAAGTAGTAGCA-GNAATNG-----------CGGTGGTATNAGCAGTAGT-AG-CGTTTGACG-----G--TAGTAGAAGCAGCAGCAGCAG---CAGTAGTAGTAGCAGT--AGTAGTAGTAGT-AGTAGTGGTAGTNGCGGTAGTAGTNG----TAAGGTATGTTTACTTTCGTTGCCCCAAAATATTANAAATACCTACCTTTT-CAGA-AAAA----AATGGCGAAAATGTTAATAAGCCACACAG-T-T-TTTATACGATTACATGCCGGAACAGTATGT
Reference ( family-670 ) : AGCAGTAGCAGCAGCAGTAGTAGTAGCAGTAGAANTAGTAGTANCAGCAGCAGCAGCAGTAGNAGTAGTAGTATTGGTAGANGCGGNAGTAGTAGTAGTAGCA-GCG---NTAGC---CGTAGTAGTAGTAGTAGTAGTNTTGGCGGCGG---CAGTAGTAGCAGTAGTNGTAGTAGTAG---TAGT--AGCAGCAGCAGCA---GCAGCAGTA---ATAG------T--AGTAGTAGTA-GT-AGTAGT------AGTAGT------AGNAG-----TA--GCAG------CAGCAGCA---GCAGCGGT---AGTACT---AGTAGAAGTAGT------AGCAGCAGCAGCAGCAGT------AGTAGTAGTTGTAGTAGCAGCAGCAGCAGC---AG---CAGCAATANTATTATAAGTAGTAGCA-GNAATNG-----------CGGTGGTATNAGCAGTAGT-AG-CGTTTGACG-----G--TAGTAGAAGCAGCAGCAGCAG---CAGTAGTAGTAGCAGT--AGTAGTAGTAGT-AGTAGTGGTAGTNGCGGTAGTAGTNG----TAAGGTATGTTTACTTTCGTTGCCCCAAAATATTANAAATACCTACCTTTT-CAGA-AAAA----AATGGCGAAAATGTTAATAAGCCACACAG-T-T-TTTATACGATTACATGCCGGAACAGTATGT
gi|1 : AGTAG-----------TGGTGGTATGAGCAGTAGT-AGTCATTTAA------------GTAAA-----C-GCATTAG---CAGTATTGGTTGCAGT--TGTAGTA-TA---AGTAGTTG-ACTCAAAGAAATTATTGCAATTAAGGTATGTTTACATTCGTTGCCCCAAAATATTAGAAATACCTACCTTT-----A-AAAA----AATGGCGAAAGTGTTAATAAGCCACACAG-T-TGTTTATATGATTACATGCCGGAACAGTATGT
gi|10 : atGCAGCAG---CAGTAGTA-CA--AGTAGTAGAACCAG---TAGT--AGAAGCAGCAGCA---ACAGCAGTA---ATAG------T--AGTTGTAGTA-CT-AGAAGTTTCTTCAGCAGC------AGCAG-----TA--GCAG------AAGGAGAATGCGCAGTAGC---AGCAGT---AGTAGCAACAGT------AGTAGCAGCAGTACTAGA------AGTAGAAGTTGTAGTAGCAGCAGCAGCAAC---AA----NNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNN-----------NNNNNNNNNNNNNNNNNNN-NN-NNNNNNNNN-----N--NNNNNNNNNNNNCAGCAGCAG---CCGTATTACTAGGAGT--AGTACCAGTctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttcccctcgtcacagactgtggggcaatgtgggataacagaaggtagtatcgatgtccaatatgtactttaagaaaatccactttatacctcattgatggacaaattaaacatttgacaacagataataaaatcgaaaatcgaaataatatttttaaaaatgtacgtctacaataaattgcgaatcatatcatatcctatattaagaatgtgtgccaaactgtgctatgaaactttaaaacttataacaaaattgtataaggtttaggatatcggttaaagtacatatatttaaagtgtaacgataaaatacattctataatctaagtatactattttactggtccacagatgtaaagagtgcttttatactggaatgggtaagctcaatttgcgacattgtcgtatatatccctttaaattgatatggcctcgagacattgatatactgataataaaaatacacatatatcaataatcaagttatcatttacgaggatgctcttaaaatctgatagtgcttatgaaaaactataaaaaggacgaaaatactaaatatatttcataaaaaaaaatataatcagaaattaagacaatttgtcattaacttgcgcagaaataaaattctttattaaatgtgtttagttaaaaaaata
gi|11 : ATTATTATAAGTAGTAGCAAGGACTTGTCTATATAATTCCTTGGTAGTAGCAGTAGT-GT-TGTTAGAAGAAGTAG--TAGTAGTAGCAGCAGCAGCAG---TAGCAGTAATAGTAGT--ATTAGTAGTAGC-AGCAGAAGCAGTAGCAATAGCAATAG----CAA
gi|11 : agttgtattatcGTAGTAGCAGTAGTGTTGTTAGAAGAAGTAGTAGTAGTAGCAGCA-GC------AGC------AGTAGCAGTAATAGTAGTATTAGTAGTAG---CAGCAGAAGCAGTAGCAATAGCAATAG---CAAC--CACAACAGCAGCA---GCAGTAGTA---GTAA------T--AGCAGTAGTA-GT-AGTCGT------AATATT------AAAAG-----TA--GCAA------CAGCAGCA---GCAGccacaacagcagcagcagtagtagtaatagcagtagtagtagtcgtaatattaaaagtagcaacagcagcagcag
gi|12 : agttgtattatcattattataagtagtagcaaggacttgtctatataattccttgGGAAGTAATAGTAGTAGCA-GTG---ATAGT---GGTGGTGGTGGTTGTATTGATGTTGGTGGTAG---CAGTTATATCAGCA---ATAGCAGTAG---CATC--AGCAGCAGTAGCA---AAAGCAGTA---TCAG------T--A-TAG
gi|13 : ggtagataagttttgtactgttcttaaaatagacattCAGCGA---TAGTAGTAAAAGTAGTAGTAGTAATAA---TAGC--AGCAGCAGCAGTA---GAAACAGTA---TTAGTCATGCT--GGTAGTATTA-GT-CGTATT------AGTAGTTCTCACATTAG-----TA--GTCG------CAGTGGTA---TCAGTGGT---AATACT---AATAag
gi|14 : t-GT-GGTGAT------AGTAGT------AGAAGACTTCTACTGCTG------CTGCTGCT---ACAAC--------TACT---ACTTGAAGTGGT------AGTAATAGCAGCAGCAGC------AGTAGTAGTTGTAGTAATTGCAGCAGCAGatgactatact
gi|15 : agaaatggtgtttAGTTATAAT-AGCAGTGGTAGTAGCAGCAGTACTAG----TAaa
gi|15 : cagcatgagttgtttttacataAGCAGTGGTAGTAGCAGCAGTACTAGTAGTAACTGTAGCAAAATCAGTAGCAATAGCAATATCGGT-GCTGCTACAGCAGTAGTAATAgtaactgtagcaaaatcagtagcaatagcaatatcggtgctgctacagcagtagtaata
gi|17 : cagcatgagttgtttttacataagttataatAGCAACAGCAGCAG---TAGTATTAGTAGCAGT--AGTAGAAGTAGT-GGTGGTGGTCGTTGTGGTGGTGGTGG----T--GGAACGTTAACTGTCTTTG
gi|18 : t------AGCAGCAGCAGCAGAAGT------AGTAGTAGTAGTAGTAGCAGCAGCAGCAGC---AGGAACATCAATCATATtaattcctctgatatat
gi|19 : TATATACGGTAGT-AG-----TAGTG-----G--TAGTAGAAGGAGTAGCAGCAG---CAGCAGCAGCAACAagaaccatcatataactattaacatatcataaa
gi|19 : tatactgtcattgttatatattacttttgtggaaaatGTAGTA-GT-AGTGGT------AGTAGA------AGGAG-----TA--GCAG------CAGCAGCA---GCAGC
gi|2 : tatactgtcattgttatatattacttttgtggaaaattatatacgTTCGTTGCCTCAAAACATTAAAAATCCCTACCTTTTATAAA-AAAAAAATAATGGCCAAAATGTTAGTAAGCCACACCGAT-T-TATATAATGTTACATGCCGGAACAATATGTaaca
gi|20 : TAGTAGTAGTAGTAGTAGTGGTGGTGGTGG---TTATGGTGGTAGTAGTGGTAATAATAA---TAGT--AGCAGTAGCATCA---GCAGCAGCG---GTAG------ctaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttcccttcgtaacaggctgtgggacaatataaggtagcgtctgtgtccaatatgttttttaagaatatccactttattcttaacagatgggcaaactaaacacttgagaacagataataaaacggaaataatattttataaaacgtacgtctataataaattgcgaatcatatcatataatcacattatgtgccgaactttgctttgaaactttaaaacttacgcggaacaaattgtataaataatgtataggatatctgtttaagtacaaatatttaaagtgtaacgataaaatacagtttataatctaggtatactatgttctggttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgttatgacctcgaggcattgatgtatactgataaaaaacacataaagtcataatta
gi|21 : GTAGTA---GAAGCAGTC---ACCG------T--CGTTGTCGTC-AT-AGTAAT------AGTAGT------AGTAA-----TA--GTAG------AAGCAGTA---G
gi|23 : CAACAGCAG---AAGTAGGA-TAGCAGT--AGTAGTAGTGGT-GGTGGTGGTGGTGGTGGTAGTA
gi|3 : tatA-AAAA----AATGACGGAATTGTTAATAAGCCATACAT-T-T-TTTATACGATTACATGCCGGAACAGTATGT
gi|6 : tAGCAGTAGCAGCAGCAATAGTACTAGAAGTAAAAGTAGTGGTAACAGCAGCAGCAGCAATAGTAGTTGTAGTATTGATNNNNNNNNNNNNNNNNNNNNNNNNN-NNN---NNNNN---CGTACTAGTTGTAGTAGTAGTTTTAGCAGCAG---CAATAGTAGAAGTAGTTATAGTAGTAT---TAGT--AACAGCAGCAGCA---GCAACAGTA---ATAG------T--AGTAGTAGTA-GT-AATATT------AGTAGT------AGTAT-----TA--ACAG------CAGTAGCA---GCAACAAT---AGTTCTGGAAGTAGAAATAGTCGTTACAGCAGCAGCAGCAGCAGT------AGTAGTAGTTGTATTAACAGCAGCAGCAGC---AG---CAGCAACNNNNNNNNNNNNNNNNNNN-NNNNNNN-----------NNNNNNNNNNNNNNNNNNN-NN-NNNNNNNNN-----NNTTAACAGCAGCAGCAGCAGCAA---CAACAGTAGTTGTAGT--AATAGAAATAGT-AATAGTGGTAGTTGTGGTATTAGTTG----TAAAGTATGTTTACTTTCGTTGCCCCAATATATTATAAATACCTATCTTTT-CAGA-AAGA----AATGGCAAAAAAGCTAATA--------------------ACGATTACATGCCGGAATTGTATGTctaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttcattcccctcatcacatgctgtgagcaatgtgggatgacagaaggtagtatcgatgttcaatttgtacttaaagaaaattcactttatacctcactgattggcaaattaaacacttgagaacagataataaaatggaaataatattttaaaagacttacgtctataataaattgcgaatcatattatgtaatcagaatatgagccaaactgtactataagacttacgcagaacaaaattgtataaataatgttgaggatatcggtaaaagtacatacatttaaagtgtaacgataaaatacattttataatctaggtatacgtttctactggtatagaatttatttccacagctgtaaagattcctggactaactggaacaggtaaactcgatttgcgacattgtcgtatacatccttttaaattgctatggcccccgagacattgatgtatactgataacaaaaatacacatatatccataatcaagttatcatttaggaggatactc
gi|7 : G---CAGTAATACTTTTATAAGTTGTA--A-AAAATAG-----------AG------TTA-CAGTGGT-AG-------A-G-----A--TAGT-GAAACAGCTGCAGCAT---AAGTGGTAGTAATGGTGTAGTAGTAGTAGTAAGTAGT
gi|7 : tgcAGTTACAGTGGTAGAGATAGTGAAACAGCTGCAGCATAAGTGGTAGTA---ATGG------TGTAGTAGTAGTA-GTAAGTAGT------A-TAGG------AAAAG-----AA--GAAGAAAAGATAGTTGTT---GTTGTGGTGTAAATAAT---AGTATAAGTAGT------AGGAACAATAACAGTAGTATAAAAAGCAATAGTAGTATTAGCAGCAACAACACCTTGGG---CAGCAATATAATTATAAATATAAGTA-GCAATTA-----------TTGTCGTATCAGAAGCAATGAG-TGCCTGACG-----GA-CAGCGAAAGCGACAGCAGCTGATTC--TA-CAGTGACAGT----TTGTAAAAGT-GGCAGTGataggaaaagaagaagaaaagatagttgttgttgtggtgtaaataatagtataagtagtaggaacaataacagtagtataaaaagcaatagtagtattagcagcaacaacaccttgggcagcaatataattataaatataagtagcaattattgtcgtatcagaagcaatgagtgcctgacggacagcgaaagcgacagcagctgattctacagtgacagtttgtaaaagtggcagtg
gi|8 : tgcgcagtaatacttttataagttgtaaaaaatagAGTAGTAGCAGTAGAAATAGTAGTATCATAAGTAGCAGCAGTAGATGTAGT--TAT-GATAAAAGTGGGAGTAGTAGTAATAACA-GCA---GTAGC---CAAAGCAGTAGCAGTAGTAGTATCAGAAGCAGTATCAGTAGCAACAGTAGATGCAGTGGTAA---TAGT--AGTAGCAGTAGCA---ACAGCAATATCCATAG------T--AAAAGTAATATGT--GTAGT------AGCAGT------A
gi|9 : tactcttaattaaaatattatggtataatcaccattataatcaatatattactgttattgttattatatactattattgttatgtttagtattatcattatatttattattacaTATCAGCAGTGGTCGTAATAGAAGTTGTAGTAGTGGTGAAGGTGGTGGTGGTAGTAGTAGTATGTGTTTTTAGTTTACGTA-TCGTAGTAGAAGTAGTCGTGGCAGTTA---CAGCAATAGCGGTTGTTGTAATAG
gi|9 : ----TAATGTATGTTTATTTTTGTTGCCCCAGAATATAACGAATACCTATCTTTT-CAGATAAAA----AATGGCAAAAATGTTAATAAGCCACTCAG-TGT-TTTAAACGATTACATGCCGGAACTGCATGTaatctaatgccctttaaatattttgcctcaaagtaaacatcgcaattaatgtatgtttatttttgttgccccagaatataacgaatacctatcttttcagataaaaaatggcaaaaatgttaataagccactcagtgttttaaacgattacatgccggaactgcatgtc
blockSeqs : G A C A C G N T C A T GTTTTTAGTTTAC G G A A TAT G A AGA GA TAA TCCA TCATGC GT T AA . TCTCAC A ACTTC CT AAAAGA . GGTGTA A GGA CGTTAC T C ATAAAA T AGGAA T GCAA G N TCTATATAATTCCTTG N N G TGTTAGAAGAAGTAG N ATT T GTA A C A C A A . A TAT T AAAT C A CGATT A T A
blockSeqs : A T T T T A A N N C . GATAGTG G G G A . T A . . . G . . . A . . T . . . . GGT G . . C A . A TTGGG A NNN N T NNNNN T G . NNNNNNNNNNNT A . G A . T A C C A . T TC . . G A AGTGT T T A
blockSeqs : T A A T A G A T N . NNNNNNC C T A G . A G . . . T . . . C . . A . . . . AAT A . . C C . T AG N GTA A N NNNNN A A . TGCCTGACGGA A . T A . T T T G G . C TC . . A T ATTT T A T
blockSeqs : A T . G . G T G . AGTAGCC G A G G . G T . . . T . . . G . . G . . . . . . . . G T . A C A C A TTGTC N N . NNNNNNNNNN A . G A . T G T G T . . . A . . . . T
blockSeqs : T . C A A . G T . . . G . . . A . . T . . . . T T AG T G . TAGTGG G . G A . T T T .
blockSeqs : A A . A T . . . A . . . A . . T . . . . C . . AGA . . G A .
blockSeqs : A T . G T . . . A . . . A . . A . . . . . G . .
blockSeqs : . . A . . . . . . .
blockSeqCons : GGTAGCC****** ****** *** TGTTAGAGNGA******* ****
originalCons : AGCAGTAGCAGCAGCAGTAGTAGTAGCAGTAGAANTAGTAGTANCAGCAGCAGCAGCAGTAGNAGTAGTAGTATTGGTAGANGCGGNAGTAGTAGTAGTAGCA-GCG---NTAGC---CGTAGTAGTAGTAGTAGTAGTNTTGGCGGCGG---CAGTAGTAGCAGTAGTNGTAGTAGTAG---TAGT--AGCAGCAGCAGCA---GCAGCAGTA---ATAG------T--AGTAGTAGTA-GT-AGTAGT------AGTAGT------AGNAG-----TA--GCAG------CAGCAGCA---GCAGCGGT---AGTACT---AGTAGAAGTAGT------AGCAGCAGCAGCAGCAGT------AGTAGTAGTTGTAGTAGCAGCAGCAGCAGC---AG---CAGCAATANTATTATAAGTAGTAGCA-GNAATNG-----------CGGTGGTATNAGCAGTAGT-AG-CGTTTGACG-----G--TAGTAGAAGCAGCAGCAGCAG---CAGTAGTAGTAGCAGT--AGTAGTAGTAGT-AGTAGTGGTAGTNGCGGTAGTAGTNG----TAAGGTATGTTTACTTTCGTTGCCCCAAAATATTANAAATACCTACCTTTT-CAGA-AAAA----AATGGCGAAAATGTTAATAAGCCACACAG-T-T-TTTATACGATTACATGCCGGAACAGTATGT
finalCons : AGCAGTAGCAGCAGCAGTAGTAGTAGCAGTAGAANTAGTAGTANCAGCAGCAGCAGCAGTAGNAGTAGTAGTATTGGTAGANGCGGNAGTAGTAGTAGTAGCA-GCGGTAGCC------GTAGTAGTAGTAGTAGTAGTNTTGGCGGCGG---CAGTAGTAGCAGTAGTNGTAGTAGTAG---TAGT--AGCAGCAGCAGCA---GCAGCAGTA---ATAG------T--AGTAGTAGTA-GT-AGTAGT------AGTAGT------AGNAG-----TA--GCAG------CAGCAGCA---GCAGCGGT---AGTACT---AGTAGAAGTAGT------AGCAGCAGCAGCAGCAGT------AGTAGTAGTTGTAGTAGCAGCAGCAGCAGC---AG---CAGCAATANTATTATAAGTAGTAGCA-GNAATNG-----------CGGTGGTATNAGCAGTAGT-AGTGTTAGAGNGA-------TAGTAGAAGCAGCAGCAGCAG---CAGTAGTAGTAGCAGT--AGTAGTAGTAGT-AGTAGTGGTAGTNGCGGTAGTAGTNG----TAAGGTATGTTTACTTTCGTTGCCCCAAAATATTANAAATACCTACCTTTT-CAGA-AAAA----AATGGCGAAAATGTTAATAAGCCACACAG-T-T-TTTATACGATTACATGCCGGAACAGTATGT
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): TTGTTATGACCCCGAAGCATTGATCTAAACTGATAACAAGAATACAAATACAGTCATCATCAAATAATCACTTACAAGAATGCTCAAAAAATCTGATGGTGCTTCTGGCAAACTGTAAAAAGGATCAAATGTTTAAATCTATTTCGTAAAAAAATATATACTCAGAAAATGAAGGTAGTTCTAATAAATTTGCGCAAAAAAAATATGTTGTTAAATGTGTTTAGTTTGTTAATACAAAGTATGCTTCTCTTTGATACACAATTATAAAATACAAGGATTTTTATCTCTTTGTTATTCCTTGTAAATAGTAGATGAACAATAGATGACACATGGTGTTAATATAATCTTTACAATAAAAAAATTGTAGACATGAGCATACTACTGATACATGTAGGTATATCAACCAAGGAATTATATATAAATCCTAAATAGATCCTAGGTGTCAAATATAAATATAAATGTATGAAGTTCATTGTTCATAATAGCACACATCTCATCATATAAAAACAGTATCTAAAGCAAGCACAGAAATGGAGAACTGATCACAAATACGCTGCTCCAGTATAAAAACGGTGCAATATACTGCCTCATTTATACTTTATTTTATTATTGCTTTCAATAATTTTCTTCATAAGAT
Unaligned ( gi|5 ): CGATGTCCAATATGTACTTTAAGCAAATCAACTTTATACCTCACTGGTGGGCAAATTAAACACTTGAGAACAGATAATAAAATGGAAAAAATATTTAAAAAAAACGTACGTCTATTATAAATTGTGAATCATATAATATAATCAGAATATGTGCCAAACTGTGATATGAAACTTTAAAACTTACGCGGAACAAAATTGTATAAATAAGGTTTAGGATATCGGTTAAATAACATATATTTAAAGTGTAACGATAAAATACATTTTATAATCTAGGTATAGTATTTTACTTGTATATAATTTATGTCCACAGCTGTAAAGATTGCTTTTATACTGCAACGGGTAAACTCGATTTGCGACATTGTCGTATACATCCCTTTAAATTGCTATGGCCCCCGAGACATTGATGTATATACACATATATCCATAATCAAGTTATCATTGACGAGGATGCTGTTAAAATCTGATAGTGCTTGTGAAAAACTATAAAAAGGACGAAAGTACTTAAAATATATTTCATAAAATATATACTCAGAAATTAAGACAATTTGTAATTAACTTGCGCAGAAAGAAAAATTATTATTCAATGTGT
Unaligned ( gi|16 ): CAACAATAACAATAACAATAACAACAGCAACAACAACAGCAATAATAATAGTAGCAATATTAATATCAAAAATATTAACAATTGTAAGATAATTATAATACCAATAATAGCAACAA
Unaligned ( gi|22 ): CACATTCACTTAACTTAATTATGCCCCGAGGCATTGGTGTATACTGAAAACTAGAATACACA
Unaligned ( gi|24 ): TACTATCAAGGACTTGTATCTATATTATTCCTTGGTAGTATGCAGTG
Unaligned ( gi|25 ): ATGCCCCGAGGCATTGGTGTATACTGAAAACTATAATACACAT
Alignments
lowQualScore : 2222222222222 111111 111111 111111 11111 111111 111111 111 222222 222222 22222222 1111 555555555555555555555555555555555555555555555555555 1111 111 1111 1111111
lowQualScore : 1 1 0 0 1 1 0 5 1 5 1 3 1 8 5555555555555 2 1 2 3 888 3 2 888 66 777 0 7777 222222 66 4 55 222222 222222 1 22222 66 444444 888 777777 1 444 333333 1 1 333333 1 66666666 1 0 0 0000 1 0 1 999999999999999999999999999999999999999999999999999 1 777 3 0 4 0 5 0 1 2 1 1 4444 0 1 333 0 8 7777 1 0 1 6666666 1 1 1
lowQualScore : . . . . . . . . . . . . . . ............. . . . . ... . . ... .. ... . .... ...... .. . .. ...... ...... . ..... .. ...... ... ...... . ... ...... . . ...... . ........ . . . .... . . . ................................................... . ... . . . . . . . . . . .... . . ... . . .... . . . ....... . . .
lowQualScore : 0 0 2 2 0 4 8 6 4 8 0 6 0 0 4444444444444 5 0 0 1 888 4 6 888 99 888 1 9999 888888 99 4 22 888888 888888 0 55555 99 444444 888 444444 4 000 000000 4 4 000000 4 22222222 0 2 2 0000 0 8 0 555555555555555555555555555555555555555555555555555 6 888 9 1 8 9 0 1 0 2 0 0 2222 2 0 555 2 0 0000 4 8 0 2222222 0 0 4
consensus : AGCAGTAGCAGCAGCAGTAGTAGTAGCAGTAGAANTAGTAGTANCAGCAGCAGCAGCAGTAGNAGTAGTAGTATTGGTAGANGCGGNAGTAGTAGTAGTAGCA-GCG---NTAGC---CGTAGTAGTAGTAGTAGTAGTNTTGGCGGCGG---CAGTAGTAGCAGTAGTNGTAGTAGTAG---TAGT--AGCAGCAGCAGCA---GCAGCAGTA---ATAG------T--AGTAGTAGTA-GT-AGTAGT------AGTAGT------AGNAG-----TA--GCAG------CAGCAGCA---GCAGCGGT---AGTACT---AGTAGAAGTAGT------AGCAGCAGCAGCAGCAGT------AGTAGTAGTTGTAGTAGCAGCAGCAGCAGC---AG---CAGCAATANTATTATAAGTAGTAGCA-GNAATNG-----------CGGTGGTATNAGCAGTAGT-AGTG--TTAGA----GNGG-TAGTAGAAGCAGCAGCAGCAG---CAGTAGTAGTAGCAGTAGTAGTAGTAGTAGT-AGTGGTAGTNGCGGTAGTAGTNG----TAAGGTATGTTTACTTTCGTTGCCCCAAAATATTANAAATACCTACCTTTT-CAGA-AAAA----AATGGCGAAAATGTTAATAAGCCACACAG-T-T-TTTATACGATTACATGCCGGAACAGTATGT
Reference ( family-670 ) : AGCAGTAGCAGCAGCAGTAGTAGTAGCAGTAGAANTAGTAGTANCAGCAGCAGCAGCAGTAGNAGTAGTAGTATTGGTAGANGCGGNAGTAGTAGTAGTAGCA-GCG---GTAGC---CGTAGTAGTAGTAGTAGTAGTNTTGGCGGCGG---CAGTAGTAGCAGTAGTNGTAGTAGTAG---TAGT--AGCAGCAGCAGCA---GCAGCAGTA---ATAG------T--AGTAGTAGTA-GT-AGTAGT------AGTAGT------AGNAG-----TA--GCAG------CAGCAGCA---GCAGCGGT---AGTACT---AGTAGAAGTAGT------AGCAGCAGCAGCAGCAGT------AGTAGTAGTTGTAGTAGCAGCAGCAGCAGC---AG---CAGCAATANTATTATAAGTAGTAGCA-GNAATNG-----------CGGTGGTATNAGCAGTAGT-AGTG--TTAGA----GNGA-TAGTAGAAGCAGCAGCAGCAG---CAGTAGTAGTAGCAGTAGTAGTAGTAGTAGT-AGTGGTAGTNGCGGTAGTAGTNG----TAAGGTATGTTTACTTTCGTTGCCCCAAAATATTANAAATACCTACCTTTT-CAGA-AAAA----AATGGCGAAAATGTTAATAAGCCACACAG-T-T-TTTATACGATTACATGCCGGAACAGTATGT
gi|1 : AGTAG-----------TGGTGGTATGAGCAGTAGT-AGTCATTTA------------AGTAAA-----C-GCATTAG---CAGTATTGGTTGCAGTTGTAGTA-TA--AGT-AGTTG-ACTCAAAGAAATTATTGCAATTAAGGTATGTTTACATTCGTTGCCCCAAAATATTAGAAATACCTACCTTT-----A-AAAA----AATGGCGAAAGTGTTAATAAGCCACACAG-T-TGTTTATATGATTACATGCCGGAACAGTATGT
gi|10 : atGCAGCAG---CAGTAGTA-CA--AGTAGTAGAACCAG---TAGT--AGAAGCAGCAGCA---ACAGCAGTA---ATAG------T--AGTTGTAGTA-CT-AGAAGTTTCTTCAGCAGC------AGCAG-----TA--GCAG------AAGGAGAATGCGCAGTAGC---AGCAGT---AGTAGCAACAGT------AGTAGCAGCAGTACTAGA------AGTAGAAGTTGTAGTAGCAGCAGCAGCAAC---A-----ANNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNN-----------NNNNNNNNNNNNNNNNNNN-NNNN--NNNNN----NNNN-NNNNNNNNNNNNCAGCAGCAG---CCGTATTACTAGGAGTAGTACCAGTctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttcccctcgtcacagactgtggggcaatgtgggataacagaaggtagtatcgatgtccaatatgtactttaagaaaatccactttatacctcattgatggacaaattaaacatttgacaacagataataaaatcgaaaatcgaaataatatttttaaaaatgtacgtctacaataaattgcgaatcatatcatatcctatattaagaatgtgtgccaaactgtgctatgaaactttaaaacttataacaaaattgtataaggtttaggatatcggttaaagtacatatatttaaagtgtaacgataaaatacattctataatctaagtatactattttactggtccacagatgtaaagagtgcttttatactggaatgggtaagctcaatttgcgacattgtcgtatatatccctttaaattgatatggcctcgagacattgatatactgataataaaaatacacatatatcaataatcaagttatcatttacgaggatgctcttaaaatctgatagtgcttatgaaaaactataaaaaggacgaaaatactaaatatatttcataaaaaaaaatataatcagaaattaagacaatttgtcattaacttgcgcagaaataaaattctttattaaatgtgtttagttaaaaaaata
gi|11 : ATTATTATAAGTAGTAGCAAGGACTTGTCTATATAATTCCTTGGTAGTAGCAGTAGT-GTTG--TTAGAAGAAGTAG-TAGTAGTAGCAGCAGCAGCAG---TAGCAGTAATAGTAGTATTAGTAGTAGCAGC-AGAAGCAGTAGCAATAGCAATAG----CAA
gi|11 : agttgtattatcGTAGTAGCAGTAGTGTTGTTAGAAGAAGTAGTAGTAGTAGCAGCA-GC------AGC------AGTAGCAGTAATAGTAGTATTAGTAGTAG---CAGCAGAAGCAGTAGCAATAGCAATAG---CAAC--CACAACAGCAGCA---GCAGTAGTA---GTAA------T--AGCAGTAGTA-GT-AGTCGT------AATATT------AAAAG-----TA--GCAA------CAGCAGCA---GCAGccacaacagcagcagcagtagtagtaatagcagtagtagtagtcgtaatattaaaagtagcaacagcagcagcag
gi|12 : agttgtattatcattattataagtagtagcaaggacttgtctatataattccttgGGAAGTAATAGTAGTAGCA-GTG---ATAGT---GGTGGTGGTGGTTGTATTGATGTTGGTGGTAG---CAGTTATATCAGCA---ATAGCAGTAG---CATC--AGCAGCAGTAGCA---AAAGCAGTA---TCAG------T--A-TAG
gi|13 : ggtagataagttttgtactgttcttaaaatagacattCAGCGA---TAGTAGTAAAAGTAGTAGTAGTAATAA---TAGC--AGCAGCAGCAGTA---GAAACAGTA---TTAGTCATGCT--GGTAGTATTA-GT-CGTATT------AGTAGTTCTCACATTAG-----TA--GTCG------CAGTGGTA---TCAGTGGT---AATACT---AATAag
gi|14 : t-GT-GGTGAT------AGTAGT------AGAAGACTTCTACTGCTG------CTGCTGCT---ACAAC--------TACT---ACTTGAAGTGGT------AGTAATAGCAGCAGCAGC------AGTAGTAGTTGTAGTAATTGCAGCAGCAGatgactatact
gi|15 : agaaatggtgtttAGTTATAATAGCAGT-GGTAGTAGCAGCAGTACTAGTAG----TAAaa
gi|15 : cagcatgagttgtttttacataAGCAGTGGTAGTAGCAGCAGTACTAGTAGTAACTGTAGCAAAATCAGTAGCAATAGCAATATCGGT-GCTGCTACAGCAGTAGTAATActgtagcaaaatcagtagcaatagcaatatcggtgctgctacagcagtagtaata
gi|17 : cagcatgagttgtttttacataagttataatAGCAACAGCAGCAG---TAGTATTAGTAGCAGTAGTAGAAGTAGTGGT-GGTGGTCGTTGTGGTGGTGGTGG----T--GGAACGTTAACTGTCTTTG
gi|18 : t------AGCAGCAGCAGCAGAAGT------AGTAGTAGTAGTAGTAGCAGCAGCAGCAGC---AGGAACATCAATCATATtaattcctctgatatat
gi|19 : TATATACGGTAGT-AGT-------A----GTGG-TAGTAGAAGGAGTAGCAGCAG---CAGCAGCAGCAACAagaaccatcatataactattaacatatcataaa
gi|19 : tatactgtcattgttatatattacttttgtggaaaatGTAGTA-GT-AGTGGT------AGTAGA------AGGAG-----TA--GCAG------CAGCAGCA---GCAGC
gi|2 : tatactgtcattgttatatattacttttgtggaaaattatatacgTTCGTTGCCTCAAAACATTAAAAATCCCTACCTTTTATAAA-AAAAAAATAATGGCCAAAATGTTAGTAAGCCACACCGAT-T-TATATAATGTTACATGCCGGAACAATATGTaaca
gi|20 : TAGTAGTAGTAGTAGTAGTGGTGGTGGTGG---TTATGGTGGTAGTAGTGGTAATAATAA---TAGT--AGCAGTAGCATCA---GCAGCAGCG---GTAG------ctaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttcccttcgtaacaggctgtgggacaatataaggtagcgtctgtgtccaatatgttttttaagaatatccactttattcttaacagatgggcaaactaaacacttgagaacagataataaaacggaaataatattttataaaacgtacgtctataataaattgcgaatcatatcatataatcacattatgtgccgaactttgctttgaaactttaaaacttacgcggaacaaattgtataaataatgtataggatatctgtttaagtacaaatatttaaagtgtaacgataaaatacagtttataatctaggtatactatgttctggttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgttatgacctcgaggcattgatgtatactgataaaaaacacataaagtcataatta
gi|21 : GTAGTA---GAAGCAGTC---ACCG------T--CGTTGTCGTC-AT-AGTAAT------AGTAGT------AGTAA-----TA--GTAG------AAGCAGTA---G
gi|23 : CAACAGCAG---AAGTAGGA-TAGCAGTAGTAGTAGTGGTGGT-GGTGGTGGTGGTGGTAGTA
gi|3 : tatA-AAAA----AATGACGGAATTGTTAATAAGCCATACAT-T-T-TTTATACGATTACATGCCGGAACAGTATGT
gi|6 : tAGCAGTAGCAGCAGCAATAGTACTAGAAGTAAAAGTAGTGGTAACAGCAGCAGCAGCAATAGTAGTTGTAGTATTGATNNNNNNNNNNNNNNNNNNNNNNNNN-NNN---NNNNN---CGTACTAGTTGTAGTAGTAGTTTTAGCAGCAG---CAATAGTAGAAGTAGTTATAGTAGTAT---TAGT--AACAGCAGCAGCA---GCAACAGTA---ATAG------T--AGTAGTAGTA-GT-AATATT------AGTAGT------AGTAT-----TA--ACAG------CAGTAGCA---GCAACAAT---AGTTCTGGAAGTAGAAATAGTCGTTACAGCAGCAGCAGCAGCAGT------AGTAGTAGTTGTATTAACAGCAGCAGCAGC---AG---CAGCAACNNNNNNNNNNNNNNNNNNN-NNNNNNN-----------NNNNNNNNNNNNNNNNNNN-NNNN--NNNNN----NNNNTTAACAGCAGCAGCAGCAGCAA---CAACAGTAGTTGTAGTAATAGAAATAGTAAT-AGTGGTAGTTGTGGTATTAGTTG----TAAAGTATGTTTACTTTCGTTGCCCCAATATATTATAAATACCTATCTTTT-CAGA-AAGA----AATGGCAAAAAAGCTAATA--------------------ACGATTACATGCCGGAATTGTATGTctaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttcattcccctcatcacatgctgtgagcaatgtgggatgacagaaggtagtatcgatgttcaatttgtacttaaagaaaattcactttatacctcactgattggcaaattaaacacttgagaacagataataaaatggaaataatattttaaaagacttacgtctataataaattgcgaatcatattatgtaatcagaatatgagccaaactgtactataagacttacgcagaacaaaattgtataaataatgttgaggatatcggtaaaagtacatacatttaaagtgtaacgataaaatacattttataatctaggtatacgtttctactggtatagaatttatttccacagctgtaaagattcctggactaactggaacaggtaaactcgatttgcgacattgtcgtatacatccttttaaattgctatggcccccgagacattgatgtatactgataacaaaaatacacatatatccataatcaagttatcatttaggaggatactc
gi|7 : G---CAGTAATACTTTTATAAGTTGTA--A-AAAATAG-----------AG------TTA-CAGTGGT-----------A----GAGA-TAGT-GAAACAGCTGCAGCAT---AAGTGGTAGTAATGGT-GTAGTAGTAGTAGTAAGTAGTA
gi|7 : tgcAGTTACAGTGGTAGAGATAGTGAAACAGCTGCAGCATAAGTGGTAGTA---ATGG------TGTAGTAGTAGTA-GTAAGTAGT------A-TAGG------AAAAG-----AA--GAAGAAAAGATAGTTGTT---GTTGTGGTGTAAATAAT---AGTATAAGTAGT------AGGAACAATAACAGTAGTATAAAAAGCAATAGTAGTATTAGCAGCAACAACACCTTGGG---CAGCAATATAATTATAAATATAAGTA-GCAATTA-----------TTGTCGTATCAGAAGCAATGAGTG--CCTGA----CGGA-CAGCGAAAGCGACAGCAGCTGATTC--TA-CAGTGACAGT--TTGTAAAAGTGGC-AGTGtaggaaaagaagaagaaaagatagttgttgttgtggtgtaaataatagtataagtagtaggaacaataacagtagtataaaaagcaatagtagtattagcagcaacaacaccttgggcagcaatataattataaatataagtagcaattattgtcgtatcagaagcaatgagtgcctgacggacagcgaaagcgacagcagctgattctacagtgacagtttgtaaaagtggcagtg
gi|8 : tgcgcagtaatacttttataagttgtaaaaaatagAGTAGTAGCAGTAGAAATAGTAGTATCATAAGTAGCAGCAGTAGATGTAGT--TA-TGATAAAAGTGGGAGTAGTAGTAATAACA-GCA---GTAGC---CAAAGCAGTAGCAGTAGTAGTATCAGAAGCAGTATCAGTAGCAACAGTAGATGCAGTGGTAA---TAGT--AGTAGCAGTAGCA---ACAGCAATATCCATAG------T--AAAAGTAATATGT--GTAGT------AGCAGT------A
gi|9 : tactcttaattaaaatattatggtataatcaccattataatcaatatattactgttattgttattatatactattattgttatgtttagtattatcattatatttattattacaTATCAGCAGTGGTCGTAATAGAAGTTGTAGTAGTGGTGAAGGTGGTGGTGGTAGTAGTAGTATGTGTTTTTAGTTTACGTA-TCGTAGTAGAAGTAGTCGTGGCAGTTA---CAGCAATAGCGGTTGTTGTAATAG
gi|9 : ----TAATGTATGTTTATTTTTGTTGCCCCAGAATATAACGAATACCTATCTTTT-CAGATAAAA----AATGGCAAAAATGTTAATAAGCCACTCAG-TGT-TTTAAACGATTACATGCCGGAACTGCATGTaatctaatgccctttaaatattttgcctcaaagtaaacatcgcaattaatgtatgtttatttttgttgccccagaatataacgaatacctatcttttcagataaaaaatggcaaaaatgttaataagccactcagtgttttaaacgattacatgccggaactgcatgtc
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): TTGTTATGACCCCGAAGCATTGATCTAAACTGATAACAAGAATACAAATACAGTCATCATCAAATAATCACTTACAAGAATGCTCAAAAAATCTGATGGTGCTTCTGGCAAACTGTAAAAAGGATCAAATGTTTAAATCTATTTCGTAAAAAAATATATACTCAGAAAATGAAGGTAGTTCTAATAAATTTGCGCAAAAAAAATATGTTGTTAAATGTGTTTAGTTTGTTAATACAAAGTATGCTTCTCTTTGATACACAATTATAAAATACAAGGATTTTTATCTCTTTGTTATTCCTTGTAAATAGTAGATGAACAATAGATGACACATGGTGTTAATATAATCTTTACAATAAAAAAATTGTAGACATGAGCATACTACTGATACATGTAGGTATATCAACCAAGGAATTATATATAAATCCTAAATAGATCCTAGGTGTCAAATATAAATATAAATGTATGAAGTTCATTGTTCATAATAGCACACATCTCATCATATAAAAACAGTATCTAAAGCAAGCACAGAAATGGAGAACTGATCACAAATACGCTGCTCCAGTATAAAAACGGTGCAATATACTGCCTCATTTATACTTTATTTTATTATTGCTTTCAATAATTTTCTTCATAAGAT
Unaligned ( gi|5 ): CGATGTCCAATATGTACTTTAAGCAAATCAACTTTATACCTCACTGGTGGGCAAATTAAACACTTGAGAACAGATAATAAAATGGAAAAAATATTTAAAAAAAACGTACGTCTATTATAAATTGTGAATCATATAATATAATCAGAATATGTGCCAAACTGTGATATGAAACTTTAAAACTTACGCGGAACAAAATTGTATAAATAAGGTTTAGGATATCGGTTAAATAACATATATTTAAAGTGTAACGATAAAATACATTTTATAATCTAGGTATAGTATTTTACTTGTATATAATTTATGTCCACAGCTGTAAAGATTGCTTTTATACTGCAACGGGTAAACTCGATTTGCGACATTGTCGTATACATCCCTTTAAATTGCTATGGCCCCCGAGACATTGATGTATATACACATATATCCATAATCAAGTTATCATTGACGAGGATGCTGTTAAAATCTGATAGTGCTTGTGAAAAACTATAAAAAGGACGAAAGTACTTAAAATATATTTCATAAAATATATACTCAGAAATTAAGACAATTTGTAATTAACTTGCGCAGAAAGAAAAATTATTATTCAATGTGT
Unaligned ( gi|16 ): CAACAATAACAATAACAATAACAACAGCAACAACAACAGCAATAATAATAGTAGCAATATTAATATCAAAAATATTAACAATTGTAAGATAATTATAATACCAATAATAGCAACAA
Unaligned ( gi|22 ): CACATTCACTTAACTTAATTATGCCCCGAGGCATTGGTGTATACTGAAAACTAGAATACACA
Unaligned ( gi|24 ): TACTATCAAGGACTTGTATCTATATTATTCCTTGGTAGTATGCAGTG
Unaligned ( gi|25 ): ATGCCCCGAGGCATTGGTGTATACTGAAAACTATAATACACAT