lowQualScore : 1111111111111111111111 111111111111111111111111111111111111
lowQualScore : 2 2222 111111 6666666666666666666 333333333 1111 444444 0000000000000000000000 11 11 1 111111 1 222 11111 111 22 22 11 11 11 777777777777777777777777777777777777 11111 44444444444444444 222222 1 1111
lowQualScore : 2 3333 0 666666 0 1111111111111111111 2 6 222222222 9999 9999 2 444444 3 5 0 7 0000000000000000000000 22 0 77 5 55 7 999999 9 999 4 5 3 0 1 333 0 33333 555 2 1 77 22 66 22 2 33 999999999999999999999999999999999999 666 11111 5 4 11 22222222222222222 4 666666 3 66 5 5 8888 7 888
lowQualScore : . .... . ...... . ................... . . ......... .... .... . ...... . . . . ...................... .. . .. . .. . ...... . ... . . . . . ... . ..... ... . . .. .. .. .. . .. .................................... ... ..... . . .. ................. . ...... . .. . . .... . ...
lowQualScore : 0 0000 2 444444 8 0000000000000000000 0 0 000000000 7777 0000 6 444444 1 7 4 3 0000000000000000000000 55 7 11 0 88 8 222222 2 555 8 2 2 2 4 000 9 55555 444 5 0 22 55 22 00 2 88 555555555555555555555555555555555555 666 22222 2 4 22 33333333333333333 0 444444 9 99 0 0 0000 1 888
consensus : NNNTAGAGGTGGGTACCGCGAGAAAAAA-GTACC--ACGGTATACCGCGT--TTTTTTAGTGAG---T---G------C-G--GTATGTACCACGGTATACTNTGTCATTTCTT-AAGG-CCAAGATGTCTCCAAATATCAGATTTGCCAC-CTTGTTGTGAACAATTT-CCCATTCGTCCGCCATTTTGATTACG----CTCGATGTAG-CG-TGGTATCAC-TGTGATG-ATTTATTTTCAATAGTAACATAAACAC------CAAGTAAAACTGGTCTGATAATGCGTTACTTTTACAATTAAGACAACTAAANACTTTAAAAAGCCGAAATATTACTTTNTTAAGTAAACGGACACAGAAATGCGACACNTTTTCACTTCAGTAATTTCCGTA--AAC-CCC-GGT-AC-ATGATGGAATC--TGCN----TANAAAA-CGGTAC---TCCATAATA-GTACCACGGTA------TGTACCGGCGCAAC-TAAAAAC----CGCGG--TATACCGG-TTTTACCGCGCAGCTC---TATA
Reference ( gi|2 ) : CTATAGAGGTGGGTACTGCGAGAAAAAAAGTACA--ATGGTATATCATGT--TTTTTTAGTGAG---T---G------C-A--GCATGTACTATGTTAAACCATGTCATTTCTC-ATGG-TCAAAATGTCTCCAAATATCAGATTTGTTTCCCTTGTTGTGAACAATTT-CCCATTCGTCCGCCATTCTGATTACACATCCTCGATGTAGTCGTTAGTATCACATGTGATG-TTTTATTTTAAATGGTAACATAAATAC------CAAGTAAAAATGGTCTGATAATGTATTACTTTTACAATTGAGATAACTAAAAACTTTAAAAAGCAATAATATTACTTTCTTAGGTAAACATACACAAAAATATGACAACTTTTAACTTTGGTAATTTCCATA--AACTCCCTGATAAC-ATAATGGAATC--TGCC----TATAAAA-TAGTAC---TTCGTAATA-GTACCACAGTT------TGGGCCAATACAGC-TAAAAA-----TGTGG--TATAGCAG-TTTTACAGCTCAACTC---TATA
gi|3 : TAGAGGTAGGTAATGCGAGAAAAAA-GTACC--ATGTTATACCACAA--TTTTTTAGTGAG---T---A------CCACTGTATGTACCATGGTATCTTTTGTCATTTCTT-AAGG-CCAAGATGTCTCTAAATATCAGATTTGCCACTCTTGTTTTGAGCAATTTCCCCATTCGTCCGCCATTATGATGACG----TTCAATGCAGGCGGTGGTATCACGTGT--TG-ATTTATTTTCAATGGTAATATAGACAC------CAAGTTAAA-----CTGATAATGCGGTTCATTTACAATTCAG--------AAACTTTAAAAAGCCAAAATATTACTTTATTAAGTAAACA
gi|12 : catTAGAGATGGGTACCGCGAGACAAAA-GTATC--ACAATAAATTGCGT--TCCTT-AGTGAG---TACCG------C-G--GTATGTACCATTGCATACTATGTCATTTCTT-AAGG-CTAAAATCTCTTCAAATATCAGATTTGCCATGCTTGTTGTGctcggtcacggaaattgccgtaaaagcgatactccataattgcaccatggtatgtactggcgcaactaaaaacgggaatatattggcattaccatgcagctctaatgatca
gi|7 : atAGAGGTGGGTACCAGGGGAAATAATGTAAC--GTGGTATATTGCAG--TTCTTTAGTGAGTATT---G------C-G--GTATGTACCACAATATATTGTATACTTTCTT-AAGGATC----TGTCTCCAAATATCAGATATGCCCCTTTTGTTGTGAACAATAT-CTCATTTGTCTGCCATTTTGATTACGC
gi|8 : agcGGTACTGCGATAAAAAAAGTACACCATGGTATACCCTGTCATTTCTTAttgactggtctgataatacattacttttacaaaaaagattactaaatact
gi|1 : gtTACCACAT--TATTTTAGTACA---T---GGTATTTC-A--GCATGTACCAC----AGCTATGTCATTTCTT-AAGG-T-----TGTCTCTAAATATCAGATTTACCACTGTTGTGGTGAACAATAT-CTCATTTGTCACCCATTTTGATT----------GGTAT-----TTGGT-------GTGATGATTTTGTTC--AATG-------AAATAC------AAAGAAAAACTGGTCTGATAATATAATACTTTAACAATTGAGACAACTAAAAA---------GCCGAAATATTACTTATTTA-GTAAATGGACACAGAAATGCAACATATTTCCACTTCAATAATTTACGTATTTATTC---AGTTAC-A----GAAAT---TGCTGGGGGAAAAAA-TGGTAC---TCCATAATG-GTACTGTGGTA------TGGACCACTGCAAC-TGAAAA-----aggccaagatgtttccaaattgtttcttattgtgaacaatttcccattcatccgccattttgattatactcaatgtaatcaatggtatagtttcaatagttacataaataccaagtaaaacttgtctgataatgcctc
gi|8 : ggcaataagaggtgggACCATGGTATACCCTGTCATTTCTT-AAGG-CCAAGATGTTTCCAAAT--------TGTTTC--TTATTGTGAACAATTT-CCCATTCATCCGCCATTTTGATTATA----CTCAATGTA---------ATCA------ATG-GTATAGTTTCAATAGTTACATAAATAC------CAAGTAAAACTTGTCTGATAATGccacactaattggaatgtaatgaaaacttatgattaggtgatttttaatgttgcaaaaagaacacattttgatgcaagtcattaataggcattcattatcatatt
gi|4 : gtggtactgcgataaaaaaagtacTGTTATTTCTT-TAGA-TTGAAATGTCTCTAAATATCA-ATTTGCCACACTTGT---GAACAATTT-CTAATTTGTTCGCCATTTTGATTA----TGCTCGAGGTAGTTGATGGTATTACTTGTGATG-ATTTATTTTCAATTATAATATAAATAC------CAAGTAAAACTGGTCTGAAAATGCG----TTCTACATTTATGACAATTAAAACCTTTAAAACCCCAAAATATCACTTTCTTAAATAcctc
gi|13 : gGTCATTTCTTTATG--CCAAAATATCTCCAAATATCAGATTTG-----CTTGTTGTGAACAATTT-TTCATTTGTCTGCCATTTTGATTACA---CCT-GA-GTAGTCAATCTTATCAGATGTGGTA-CTTcctttctacttctgtttgtgaaaattgccccaaaaaaaacagtactccataataataccacagtatgaaccggcgcagctaaaaactgcagtatatgggttttactgcgcagctcaaatatacaagcata
gi|5 : aatgAAGATTTCTTCAAATATCAGATTTGAC------------AACAATTT-CCCATTCATCTTCCATTTTGATTACGC----TCGATG---------GTATCGCATGTGATG-ATTTAATTTCAACAATAACATAAACACTTCATACAAGTAAAACTGATCTGATAATGTGTTACTTTTACACTTAAGACAACTTAAAACATT-AAAAGCCACAACATTACTTTC-----TAAA-------GGAAATG-GACACTTTTTCACTTCAGTAATTTCCATA--AACACTC-GGT--C-ATG--GGAATCAAAG-------AAAAAA-TGGTACTAATCCTTAATA-GTACCGCGGTA------TGTACCGGCACAAC-TAAAAAC----TGTGG--TTTACTGG-TTTTAATGCACAGCTT---TA
gi|6 : TGTGACA-ATTTATTTTCAATAGTAA----AACA-----------TAAAACTGGACTGATAATGCGTTACTTTTACAATTAAGACAACTAAACGTGTTAAAAGGCCGAAAAGTTAATTTCTTAAGTAAACAGACACAAAAAAA--ACACCTTTACACTTCAGTTATTTCCGTA--AAC---------AC--T--TGGTCTC--AGCA----T-T---A-TAGTAC-----CGCAGTATATAC--------------GAGCT----CAACTTAAAAC-----TGCTG--TATACCAG-TTTTACCGTGCAGCTC---TAT
gi|7 : cccattcaatgttttaagTGGTCTGATAATACATTACTTTTACAAAAAAGATTACTAAATACTgg
gi|10 : agcagaggtgggtaccaggggaaataatgtaacgtggtatattgcagttctttagtgagtattgcggtatgtaccacaatatattgtatactttcttaaggatctgtctccaaatatcagatatgccccttttgttgtgaacaatatctcatttgtctgccattttgattacgcttgacACAACTAAACACTTTAAAAAGCAGAAATATTGCTCTGTAAAGTAAACAGAAACAGAAAT
gi|9 : ACAACTAAACACTTTAAAAAGCAGAAATATTGCTCTGTAAAGTAAACAGAAACAGAAATtgctgaaaaaaattgtactccataatagtaccacaattatataatgtattggtgcagctaaaagccatgatgtaccagttttatcgcacagttctggcgcaca
gi|11 : CAA-AATATTACT-----AAGTAAATGGACACAAAAATACAATATGTTTTCACTTCAGTAATTTCCGTA--AAC-ACTTGGTAACGAAAAT----TC--T-CG----TA-AAAA-CGGTTC---TCCATAATA-GTACCATGATA------TGTACCAAC-TAAC-TAAAAA-----tgctgaaaaaaattgtactccataatagtaccacaattatataatgtattggtgcagctaaaagccatgatgtaccagttttatcgcacagttctggcgcaca
gi|3 : cgcACGGAAAT--TGCC-----GTAAAAGCGATAC---TCCATAATT-GCACCATGGTA------TGTACTGGCGCAAC-TAAAAA-----CG-GGAATATATTGG-CATTACCATGCAGCTC---TAcc
gi|4 : cattagaggtaggtaatgcgagaaaaaagtaccatgttataccacaattttttagtgagtaccactgtatgtaccatggtatcttttgtcatttcttaaggccaagatgtctctaaatatcagatttgccactcttgttttgagcaatttccccattcgtccgccattatgatgacgttcaatgcaggcggtggtatcacgtgttgatttattttcaatggtaatatagacaccaagttaaactgataatgcggttcatttacaattcagaaactttaaaaagccaaaatattactttattaagtaaacactcggtcAAAA-CAGTAC---TCCATAATA-ATACCACAGTA------TGAACCGGCGCAGC-TAAAAAC----TGCAG--TATATGGG-TTTTACTGCGCAGCTCAAATATAatgatca
gi|10 : gtgttatttctttagattgaaatgtctctaaatatcaatttgccacacttgtgaacaatttctaatttgttcgccattttgattatgctcgaggtagttgatggtattacttgtgatgatttattttcaattataatataaataccaagtaaaactggtctgaaaatgcgttctacatttatgacaattaaaacctttaaaaccccaaaatatcactttcttaaatacctttctacttctgtttgtgaaaattgccccaaaaAAAA-TTGTAC---TCCATAATA-GTACCACAATTATATAATGTATTGGTGCAGC-TAAAAGC----CATGA--TGTACCAG-TTTTATCGCACAGTTC---caagcata
gi|9 : acaactaaacactttaaaaagcagaaatattgctctgtaaagtaaacagaaacagaaattgctgaaaAAAA-TTGTAC---TCCATAATA-GTACCACAATTATATAATGTATTGGTGCAGC-TAAAAGC----CATGA--TGTACCAG-TTTTATCGCACAGTTC---ggcgcaca
gi|14 : acaactaaacactttaaaaagcagaaatattgctctgtaaagtaaacagaaacagaaattgctgaaaTAC---TCCATAATA-GTAACAAAG-T------TGTACCGGCGCAAC--AAAAAGAACCCGTGA--TAAACCAGCTTTTACTGCACACATC---TAggcgcaca
gi|16 : CCAGTGCAGC-TAAAAA-----CAGGG--TATACCGG-ATTTACTGCGCAGCTT---TAatgcacgt
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|15 ): TTAAGACACTGCAAAGCTAAGAAAATGACAAGTTGATAGATACATTATAATAATT
Alignments
lowQualScore : 1 11 444444444444444 222222222 1111 1 444444444 2222 111111 1111 888888888888888888888888888888888888 222222
lowQualScore : 8 6 11 2 2 99 999999999999999 0 1 1 55 2 999999999 66 1 5 0 0000 1 666666666 4444 22 5 666666 5 5 0 2 2 0000 1 99 22 99 888888888888888888888888888888888888 0 777 000000 7777 0 5 4 777
lowQualScore : . . .. . . .. ............... . . . .. . ......... .. . . . .... . ......... .... .. . ...... . . . . . .... . .. .. .. .................................... . ... ...... .... . . . ...
lowQualScore : 0 0 00 8 2 22 666666666666666 7 7 0 66 7 888888888 11 8 0 2 6666 9 222222222 5555 99 3 444444 1 3 1 6 3 6666 1 66 44 22 222222222222222222222222222222222222 9 000 999999 7777 4 5 4 888
consensus : NNNTAGAGGTGGGTACCGCGA-GAAAAAA-GTAC--CATGGTATACCGCGT--TTTTTTAGTGAGTA--G------CG---GTATGTACCACGGTATACTNTGTCATTTCTTAAGGCCAAGATGTCTCCAAATATCAGATTTGC--CAC-C-TT--GTTGTGAACAATTT-CCCATTCGTCCGCCATTTTGATTACGC----TCGATGTA-G-C--GT-GGTATCAC-T-GTGATGATTTATTTTCAATGGTAACATAAACAC------CAAGTAAAACTGGTCTGATAATGCGTTACTTTTACAATTAAGACAACTAAANACTTTAAAAAGCCGAAATATTACTTTCTTAAGTAAA----CGGACACAGAAATGCGACACNTTTTCACTTCAGTAATTTCCGTA--AA--CACCCGGT-ACACG--GGAATCTGC----G-TAAAAAACGGTAC---TCCATAATAGTACCGCGGT------ATGTACCGGCGCAGCTAAAAA----CCGCGGTATACCGG-TTTTACCGCGCAGCTC---TATA
Reference ( family-66 ) : NNNTAGAGGTGGGTACCGCGA-GAAAAAA-GTAC--CACGGTATACCGCGT--TTTTTTAGTGAGT---G------CG---GTATGTACCACGGTATACTNTGTCATTTCTTAAGGCCAAGATGTCTCCAAATATCAGATTTGC--CAC-C-TT--GTTGTGAACAATTT-CCCATTCGTCCGCCATTTTGATTACGC----TCGATGTA-G-C--GT-GGTATCAC-T-GTGATGATTTATTTTCAATAGTAACATAAACAC------CAAGTAAAACTGGTCTGATAATGCGTTACTTTTACAATTAAGACAACTAAANACTTTAAAAAGCCGAAATATTACTTTNTTAAGTAAA----CGGACACAGAAATGCGACACNTTTTCACTTCAGTAATTTCCGTA--AA--C-CCCGGT-ACATGATGGAATCTGC----N-TANAAAACGGTAC---TCCATAATAGTACCACGGT------ATGTACCGGCGCAACTAAAAA----CCGCGGTATACCGG-TTTTACCGCGCAGCTC---TATA
gi|1 : TACCACAT--TATTTTAGTACAT---GGTATTTCA---GCATGTACCACAG----CTATGTCATTTCTTAAGGT-----TGTCTCTAAATATCAGATTTAC--CAC-TGTT--GTGGTGAACAATAT-CTCATTTGTCACCCATTTTGATTG------------GTA-T-T---T-GGT--------GTGATGATTT-TGTTCAATG-------AAATAC------AAAGAAAAACTGGTCTGATAATATAATACTTTAACAATTGAGACAACTAAA---------AAGCCGAAATATTACTTATTTA-GTAAA----TGGACACAGAAATGCAACATATTTCCACTTCAATAATTTACGTATTTA--T-TCAGTT-ACA----GAAAT-TGCTGGGG-GAAAAAATGGTAC---TCCATAATGGTACTGTGGT------ATGGACCACTGCAACTGAAAA----CCAC
gi|10 : ggcaataagaggtgggACAACTAAACACTTTAAAAAGCAGAAATATTGCTCTGTAAAGTAAA----CAGAAACAGAAATactaattggaatgtaatgaaaacttatgattaggtgatttttaatgttgcaaaaagaacacattttgatgcaagtcattaataggcattcattatcatatt
gi|10 : AAAAAATTGTAC---TCCATAATAGTACCACAATTATATAATGTATTGGTGCAGCTAAAAG----CCATGATGTACCAG-TTTTATCGCACAGTTC---tgctgaaaaaaattgtactccataatagtaccacaattatataatgtattggtgcagctaaaagccatgatgtaccagttttatcgcacagttctggcgcaca
gi|11 : acaactaaacactttaaaaagcagaaatattgctctgtaaagtaaacagaaacagaaattgctgaGCCAAAATATTACT-----AAGTAAA----TGGACACAAAAATACAATATGTTTTCACTTCAGTAATTTCCGTA--AA--CACTTGGT-A-ACGA--AAATTCTC----G-TA-AAAACGGTTC---TCCATAATAGTACCATGAT------ATGTACCAAC-TAACTAAAAA----CCggcgcaca
gi|12 : cTAGAGATGGGTACCGCGA-GACAAAA-GTAT--CACAATAAATTGCGT--TCCTT-AGTGAGTACCG------CG---GTATGTACCATTGCATACTATGTCATTTCTTAAGGCTAAAATCTCTTCAAATATCAGATTTGC--CATGC-TT--GTTGTG
gi|13 : atGTCATTTCTTTATGCCAAAATATCTCCAAATATCAGATTTGC--------TT--GTTGTGAACAATTT-TTCATTTGTCTGCCATTTTGATTACAC----CTGA-GTA-G-
gi|14 : aatgTAC---TCCATAATAGTAACAAAGT-------TGTACCGGCGCAAC-AAAAAGAACCCGTGATAAACCAGCTTTTACTGCACACATC---TAtcaatcttatcagatgtggtactt
gi|16 : GT------ATGTACCAGTGCAGCTAAAAA----CAG-GGTATACCGG-ATTTACTGCGCAGCTT---TAatgcacgt
gi|2 : TAGAGGTGGGTACTGCGA-GAAAAAAAGTAC--AATGGTATATCATGT--TTTTTTAGTGAGT---G------CA---GCATGTACTATGTTAAACCATGTCATTTCTCATGGTCAAAATGTCTCCAAATATCAGATTTGTTTC-C-C-TT--GTTGTGAACAATTT-CCCATTCGTCCGCCATTCTGATTACACATCCTCGATGTA-GTC--GTTAGTATCACAT-GTGATGTTTTATTTTAAATGGTAACATAAATAC------CAAGTAAAAATGGTCTGATAATGTATTACTTTTACAATTGAGATAACTAAAAACTTTAAAAAGCAATAATATTACTTTCTTAGGTAAA----CATACACAAAAATATGACAACTTTTAACTTTGGTAATTTCCATA--AACTC-CCTGATAACATAATGGAATCTGC----C-TATAAAATAGTAC---TTCGTAATAGTACCACAGT------TTGGGCCAATACAGCTAAAAA-----TGTGGTATAGCAG-TTTTACAGCTCAACTC---TATA
gi|3 : ctaTAGAGGTAGGTAATGCGA-GAAAAAA-GTAC--CATGTTATACCACAA--TTTTTTAGTGAGT---A------CCACTGTATGTACCATGGTATCTTTTGTCATTTCTTAAGGCCAAGATGTCTCTAAATATCAGATTTGC--CACTC-TT--GTTTTGAGCAATTTCCCCATTCGTCCGCCATTATGATGACGT----TCAATGCAGG-CG-GT-GGTATCAC---GTGTTGATTTATTTTCAATGGTAATATAGACAC------CAAGTTAAA-----CTGATAATGCGGTTCATTTACAATTCAG--------AAACTTTAAAAAGCCAAAATATTACTTTATTAAGTAAACACTCGGTCACGGAAAT
gi|3 : catTTACTTTATTAA-----GTA--AA--CACTCGGT--CACG--GAAAT-TGC----CGTA-AAAGCGATAC---TCCATAATTGCACCATGGT------ATGTACTGGCGCAACTAAAAA----CGGGAATATATTGG-CATTACCATGCAGCTC---TAtgccgtaaaagcgatactccataattgcaccatggtatgtactggcgcaactaaaaacgggaatatattggcattaccatgcagctctaatgatca
gi|4 : cattagaggtaggtaatgcgagaaaaaagtaccatgttataccacaattttttagtgagtaccactgtatgtaccatggtatcttttgtcatttcttaaggccaagatgtctctaaatatcagatttgccactcttgttttgagcaatttccccattcgtccgccattatgatgacgttcaatgcaggcggtggtatcacgtgttgatttattttcaatggtaatatagacaccaagttaaactgataatgcggttcatttacaattcagaaactttaaaaagccaaaataTGTTATTTCTTTAGATTGAAATGTCTCTAAATATCA-ATTTGC--CACAC-TT--GT---GAACAATTT-CTAATTTGTTCGCCATTTTGATTATGC----TCGAGGTA-G-TTGAT-GGTATTAC-TTGTGATGATTTATTTTCAATTATAATATAAATAC------CAAGTAAAACTGGTCTGAAAATGCG----TTCTACATTTATGACAATTAAAACCTTTAAAACCCCAAAATATCACTTTCTTAAATAatgatca
gi|4 : gAAAAAACAGTAC---TCCATAATAATACCACAGT------ATGAACCGGCGCAGCTAAAAA----CTGCAGTATATGGG-TTTTACTGCGCAGCTCAAATATAcctttctacttctgtttgtgaaaattgccccaaaaaaaacagtactccataataataccacagtatgaaccggcgcagctaaaaactgcagtatatgggttttactgcgcagctcaaatatacaagcata
gi|5 : gtgttatttctttagattgaaatgtctctaaatatcaatttgccacacttgtgaacaatttctaatttgttcgccattttgattatgctcgaggtagttgatggtattacttgtgatgatttattttcaattataatataaataccaagtaaaactggtctgaaaatgcgttctacatttatgacaattaaaacctttaaaaccccaaaatatcactttcttaaatacctttctacttctgtttgtgaaaattgccccaaAAGATTTCTTCAAATATCAGATTTG----AC-------------AACAATTT-CCCATTCATCTTCCATTTTGATTACGC----TCGA-----------T-GGTATCGCAT-GTGATGATTTAATTTCAACAATAACATAAACACTTCATACAAGTAAAACTGATCTGATAATGTGTTACTTTTACACTTAAGACAACTTAAAACATT-AAAAGCCACAACATTACTTTCTAAAG----------------GAAATG-GACACTTTTTCACTTCAGTAATTTCCATA--AA--CACTCGGT--CATG--GGAATC-AA----A-GAAAAAATGGTACTAATCCTTAATAGTACCGCGGT------ATGTACCGGCACAACTAAAAA----CTGTGGTTTACTGG-TTTTAATGCACAGCTT---TAcaagcata
gi|6 : -T-GTGACAATTTATTTTCAATAGTAA----AACA-----------TAAAACTGGACTGATAATGCGTTACTTTTACAATTAAGACAACTAAACGTGTTAAAAGGCCGAAAAGTTAATTTCTTAAGTAAA----CAGACACAAAAA--AAACACCTTTACACTTCAGTTATTTCCGTA--AA--C-ACT----------TGG--TCT---------------CAGCAT---T-----ATAGTACCGCAGT------ATATACGAGCTCAACTTAAAA----CTGCTGTATACCAG-TTTTACCGTGCAGCTC---TAT
gi|7 : cccattcaatgttttaagAGAGGTGGGTACCAGGG-GAAATAATGTAA--CGTGGTATATTGCAG--TTCTTTAGTGAGTATTG------CG---GTATGTACCACAATATATTGTATACTTTCTTAAGG---ATCTGTCTCCAAATATCAGATATGC--C-C-C-TTTTGTTGTGAACAATAT-CTCATTTGTCTGCCATTTTGATTACGC----TTGAgg
gi|7 : agcACTGGTCTGATAATACATTACTTTTACAAAAAAGATTACTAAATACTctggtctgataatacattacttttacaaaaaagattactaaatact
gi|8 : agcagaggtgggtaccaggggaaataatgtaacgtggtatattgcagttctttagtgagtattgcggtatgtaccacaatatattgtatactttcttaaggatctgtctccaaatatcagatatgccccttttgttgtgaacaatatctcatttgtctgccattttgattacgcttgGGTACTGCGATAAAAAAA-GTACACCATGGTATACCCTGTCATTTCTTA
gi|8 : gtACCATGGTATACCCTGTCATTTCTTAAGGCCAAGATGTTTCCAAAT-T---GTTT--------C-TT--ATTGTGAACAATTT-CCCATTCATCCGCCATTTTGATTATAC----TCAATGTA------------ATCA-------ATGGTATAGTTTCAATAGTTACATAAATAC------CAAGTAAAACTTGTCTGATAATGCaggccaagatgtttccaaattgtttcttattgtgaacaatttcccattcatccgccattttgattatactcaatgtaatcaatggtatagtttcaatagttacataaataccaagtaaaacttgtctgataatgcctc
gi|9 : gtggtactgcgataaaaaaagtacACAACTAAACACTTTAAAAAGCAGAAATATTGCTCTGTAAAGTAAA----CAGAAACAGAAATctc
gi|9 : AAAAAATTGTAC---TCCATAATAGTACCACAATTATATAATGTATTGGTGCAGCTAAAAG----CCATGATGTACCAG-TTTTATCGCACAGTTC---tgctgaaaaaaattgtactccataatagtaccacaattatataatgtattggtgcagctaaaagccatgatgtaccagttttatcgcacagttctggcgcaca
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TTAAGACACTGCAAAGCTAAGAAAATGACAAGTTGATAGATACATTATAATAATT
Alignments
lowQualScore : 1 11 4444444444444 222222222 1111 55555555555555555555 111111 1111 555555555555555555555555555555 222222
lowQualScore : 8 6 11 2 99 1111111111111 0 1 1 55 2 999999999 66 1 5 0 0000 4 0 33333333333333333333 22 5 666666 5 5 2 2 2 0000 1 99 22 999999999999999999999999999999 0 777 1 000000 7777 0 5 4 777
lowQualScore : . . .. . .. ............. . . . .. . ......... .. . . . .... . . .................... .. . ...... . . . . . .... . .. .. .............................. . ... . ...... .... . . . ...
lowQualScore : 0 0 00 2 22 4444444444444 7 7 0 66 7 888888888 11 8 0 2 6666 9 1 44444444444444444444 11 3 444444 1 3 0 9 3 6666 1 66 44 222222222222222222222222222222 9 000 2 999999 7777 4 5 4 888
consensus : NNNTAGAGGTGGGTACCGCGA-GAAAAAA-GTAC--CATGGTATACCGCGT--TTTTTTAGTGAGTA--G-----CG--GTATGTACCACGGTATACTNTGTCATTTCTTAAGGCCAAGATGTCTCCAAATATCAGATTTGC--CAC-C-TT--GTTGTGAACAATTT-CCCATTCGTCCGCCATTTTGATTACGC----TCGATGTA-G-C--GT-GGTATCAC-T-GTGATGATTTATTTTCAATGGTAACATAAACAC------CAAGTAAAACTGGTCTGATAATGCGTTACTTTTACAATTAAGACAACTAAANACTTTAAAAAGCCGAAATATTACTTTCTTAAGTAAA----CGGACACAGAAATGCGACACNTTTTCACTTCAGTAATTTCCGTAAACACTC-GGT-ACACG--GAAATCTGCT---GNAAAAAACGGTACT---CCATAATAGTACCGCGGT------ATGTACCGGCGCAGCTAAAAA----CCGCGGTATACCGG-TTTTACCGCGCAGCTC---TATA
Reference ( family-66 ) : NNNTAGAGGTGGGTACCGCGA-GAAAAAA-GTAC--CATGGTATACCGCGT--TTTTTTAGTGAGTA--G-----CG--GTATGTACCACGGTATACTNTGTCATTTCTTAAGGCCAAGATGTCTCCAAATATCAGATTTGC--CAC-C-TT--GTTGTGAACAATTT-CCCATTCGTCCGCCATTTTGATTACGC----TCGATGTA-G-C--GT-GGTATCAC-T-GTGATGATTTATTTTCAATGGTAACATAAACAC------CAAGTAAAACTGGTCTGATAATGCGTTACTTTTACAATTAAGACAACTAAANACTTTAAAAAGCCGAAATATTACTTTCTTAAGTAAA----CGGACACAGAAATGCGACACNTTTTCACTTCAGTAATTTCCGTAAACACCC-GGT-ACACG--GGAATCTGC----GTAAAAAACGGTACT---CCATAATAGTACCGCGGT------ATGTACCGGCGCAGCTAAAAA----CCGCGGTATACCGG-TTTTACCGCGCAGCTC---TATA
gi|1 : TACCACAT--TATTTTAGTACATG--GTATTTCA--GCATGTACCACAG----CTATGTCATTTCTTAAGGT-----TGTCTCTAAATATCAGATTTAC--CAC-TGTT--GTGGTGAACAATAT-CTCATTTGTCACCCATTTTGATTG------------GTA-T-T---T-GGT--------GTGATGATTT-TGTTCAATG-------AAATAC------AAAGAAAAACTGGTCTGATAATATAATACTTTAACAATTGAGACAACTAAA---------AAGCCGAAATATTACTTATTTA-GTAAA----TGGACACAGAAATGCAACATATTTCCACTTCAATAATTTACGTATTTATTC-AGT--TACA--GAAAT-TGCTGGGGGAAAAAATGGTACT---CCATAATGGTACTGTGGT------ATGGACCACTGCAACTGAAAA----CCAC
gi|10 : ggcaataagaggtgggACAACTAAACACTTTAAAAAGCAGAAATATTGCTCTGTAAAGTAAA----CAGAAACAGAAATactaattggaatgtaatgaaaacttatgattaggtgatttttaatgttgcaaaaagaacacattttgatgcaagtcattaataggcattcattatcatatt
gi|10 : GTAAACA-----G--AAACA--GAAAT-TGCT---GAAAAAAATTGTACT---CCATAATAGTACCACAATTATATAATGTATTGGTGCAGCTAAAAG----CCATGATGTACCAG-TTTTATCGCACAGTTC---tgctgaaaaaaattgtactccataatagtaccacaattatataatgtattggtgcagctaaaagccatgatgtaccagttttatcgcacagttctggcgcaca
gi|11 : acaactaaacactttaaaaagcagaaatattgctctgtaaaGCCAAAATATTACT-----AAGTAAA----TGGACACAAAAATACAATATGTTTTCACTTCAGTAATTTCCGTAAACACTT-GGT-A-ACG--AAAATTCTC----GT-AAAAACGGTTCT---CCATAATAGTACCATGAT------ATGTACCAAC-TAACTAAAAA----CCggcgcaca
gi|12 : cTAGAGATGGGTACCGCGA-GACAAAA-GTAT--CACAATAAATTGCGT--TCCTT-AGTGAGTACCG-----CG--GTATGTACCATTGCATACTATGTCATTTCTTAAGGCTAAAATCTCTTCAAATATCAGATTTGC--CATGC-TT--GTTGTG
gi|13 : atGTCATTTCTTTATGCCAAAATATCTCCAAATATCAGATTTGC--------TT--GTTGTGAACAATTT-TTCATTTGTCTGCCATTTTGATTACAC----CTGA-GTA-G-
gi|14 : aatgTACT---CCATAATAGTAACAAAGT-------TGTACCGGCGCAAC-AAAAAGAACCCGTGATAAACCAGCTTTTACTGCACACATC---TAtcaatcttatcagatgtggtactt
gi|16 : GT------ATGTACCAGTGCAGCTAAAAA----CAG-GGTATACCGG-ATTTACTGCGCAGCTT---TAatgcacgt
gi|2 : TAGAGGTGGGTACTGCGA-GAAAAAAAGTAC--AATGGTATATCATGT--TTTTTTAGTGAGT---G-----CA--GCATGTACTATGTTAAACCATGTCATTTCTCATGGTCAAAATGTCTCCAAATATCAGATTTGTTTC-C-C-TT--GTTGTGAACAATTT-CCCATTCGTCCGCCATTCTGATTACACATCCTCGATGTA-GTC--GTTAGTATCACAT-GTGATGTTTTATTTTAAATGGTAACATAAATAC------CAAGTAAAAATGGTCTGATAATGTATTACTTTTACAATTGAGATAACTAAAAACTTTAAAAAGCAATAATATTACTTTCTTAGGTAAA----CATACACAAAAATATGACAACTTTTAACTTTGGTAATTTCCATAAACTCCCTGATAACATAATGGAATCTGC----CTATAAAATAGTACT---TCGTAATAGTACCACAGT------TTGGGCCAATACAGCTAAAAA-----TGTGGTATAGCAG-TTTTACAGCTCAACTC---TATA
gi|3 : ctaTAGAGGTAGGTAATGCGA-GAAAAAA-GTAC--CATGTTATACCACAA--TTTTTTAGTGAGTA--C-----CACTGTATGTACCATGGTATCTTTTGTCATTTCTTAAGGCCAAGATGTCTCTAAATATCAGATTTGC--CACTC-TT--GTTTTGAGCAATTTCCCCATTCGTCCGCCATTATGATGACGT----TCAATGCAGG-CG-GT-GGTATCAC---GTGTTGATTTATTTTCAATGGTAATATAGACAC------CAAGTTAAA-----CTGATAATGCGGTTCATTTACAATTCAG--------AAACTTTAAAAAGCCAAAATATTACTTTATTAAGTAAACACTCGGTCACGGAAAT
gi|3 : catTTACTTTATTAA-----GTAAACACTC-GGT--CACG--GAAAT-TGCC---GTAAAAG-CGATACT---CCATAATTGCACCATGGT------ATGTACTGGCGCAACTAAAAA----CGGGAATATATTGG-CATTACCATGCAGCTC---TAtgccgtaaaagcgatactccataattgcaccatggtatgtactggcgcaactaaaaacgggaatatattggcattaccatgcagctctaatgatca
gi|4 : cattagaggtaggtaatgcgagaaaaaagtaccatgttataccacaattttttagtgagtaccactgtatgtaccatggtatcttttgtcatttcttaaggccaagatgtctctaaatatcagatttgccactcttgttttgagcaatttccccattcgtccgccattatgatgacgttcaatgcaggcggtggtatcacgtgttgatttattttcaatggtaatatagacaccaagttaaactgataatgcggttcatttacaattcagaaactttaaaaagccaaaataTGTTATTTCTTTAGATTGAAATGTCTCTAAATATCA-ATTTGC--CACAC-TT--GT---GAACAATTT-CTAATTTGTTCGCCATTTTGATTATGC----TCGAGGTA-G-TTGAT-GGTATTAC-TTGTGATGATTTATTTTCAATTATAATATAAATAC------CAAGTAAAACTGGTCTGAAAATGCG----TTCTACATTTATGACAATTAAAACCTTTAAAACCCCAAAATATCACTTTCTTAAATAatgatca
gi|4 : gAAAAAACAGTACT---CCATAATAATACCACAGT------ATGAACCGGCGCAGCTAAAAA----CTGCAGTATATGGG-TTTTACTGCGCAGCTCAAATATAcctttctacttctgtttgtgaaaattgccccaaaaaaaacagtactccataataataccacagtatgaaccggcgcagctaaaaactgcagtatatgggttttactgcgcagctcaaatatacaagcata
gi|5 : gtgttatttctttagattgaaatgtctctaaatatcaatttgccacacttgtgaacaatttctaatttgttcgccattttgattatgctcgaggtagttgatggtattacttgtgatgatttattttcaattataatataaataccaagtaaaactggtctgaaaatgcgttctacatttatgacaattaaaacctttaaaaccccaaaatatcactttcttaaatacctttctacttctgtttgtgaaaattgccccaaAAGATTTCTTCAAATATCAGATTTG----AC-------------AACAATTT-CCCATTCATCTTCCATTTTGATTACGC----TCGATG------------GTATCGCAT-GTGATGATTTAATTTCAACAATAACATAAACACTTCATACAAGTAAAACTGATCTGATAATGTGTTACTTTTACACTTAAGACAACTTAAAACATTAAAA-GCCACAACATTACTTTCTAAAG----------------GAAATG-GACACTTTTTCACTTCAGTAATTTCCATAAACACTC-GGT--CATG--GGAATCAAA----G-AAAAAATGGTACTAATCCTTAATAGTACCGCGGT------ATGTACCGGCACAACTAAAAA----CTGTGGTTTACTGG-TTTTAATGCACAGCTT---TAcaagcata
gi|6 : -T-GTGACAATTTATTTTCAATAGTAA----AACA-----------TAAAACTGGACTGATAATGCGTTACTTTTACAATTAAGACAACTAAACGTGTTAAAAGGCCGAAAAGTTAATTTCTTAAGTAAA----CAGACACAAAAA--AAACACCTTTACACTTCAGTTATTTCCGTAAACACTT-GG-------------TCT--------------CAGCATT--------ATAGTACCGCAGT------ATATACGAGCTCAACTTAAAA----CTGCTGTATACCAG-TTTTACCGTGCAGCTC---TAT
gi|7 : cccattcaatgttttaagAGAGGTGGGTACCAGGG-GAAATAATGTAA--CGTGGTATATTGCAG--TTCTTTAGTGAGTATTG-----CG--GTATGTACCACAATATATTGTATACTTTCTTAAGG---ATCTGTCTCCAAATATCAGATATGC--C-C-C-TTTTGTTGTGAACAATAT-CTCATTTGTCTGCCATTTTGATTACGC----TTGAgg
gi|7 : agcACTGGTCTGATAATACATTACTTTTACAAAAAAGATTACTAAATACTctggtctgataatacattacttttacaaaaaagattactaaatact
gi|8 : agcagaggtgggtaccaggggaaataatgtaacgtggtatattgcagttctttagtgagtattgcggtatgtaccacaatatattgtatactttcttaaggatctgtctccaaatatcagatatgccccttttgttgtgaacaatatctcatttgtctgccattttgattacgcttgGGTACTGCGATAAAAAAA-GTACACCATGGTATACCCTGTCATTTCTTA
gi|8 : gtACCATGGTATACCCTGTCATTTCTTAAGGCCAAGATGTTTCCAAAT-T---GTTT--------C-TT--ATTGTGAACAATTT-CCCATTCATCCGCCATTTTGATTATAC----TCAATGTA------------ATCA-------ATGGTATAGTTTCAATAGTTACATAAATAC------CAAGTAAAACTTGTCTGATAATGCaggccaagatgtttccaaattgtttcttattgtgaacaatttcccattcatccgccattttgattatactcaatgtaatcaatggtatagtttcaatagttacataaataccaagtaaaacttgtctgataatgcctc
gi|9 : gtggtactgcgataaaaaaagtacACAACTAAACACTTTAAAAAGCAGAAATATTGCTCTGTAAAGTAAA----CAGAAACAGAAATctc
gi|9 : GTAAACA-----G--AAACA--GAAAT-TGCT---GAAAAAAATTGTACT---CCATAATAGTACCACAATTATATAATGTATTGGTGCAGCTAAAAG----CCATGATGTACCAG-TTTTATCGCACAGTTC---tgctgaaaaaaattgtactccataatagtaccacaattatataatgtattggtgcagctaaaagccatgatgtaccagttttatcgcacagttctggcgcaca
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TTAAGACACTGCAAAGCTAAGAAAATGACAAGTTGATAGATACATTATAATAATT
Alignments
lowQualScore : 1 11 4444444444444 222222222 1111 55555555555555555555 111111 111111 111 555555555555555555555555555555 222222
lowQualScore : 8 6 11 2 99 1111111111111 0 1 1 55 2 999999999 66 1 5 0 0000 4 0 33333333333333333333 22 5 666666 1 5 2 2 2 0 111111 1 999 1 1 1 4 333333333333333333333333333333 0 777 1 000000 7777 0 5 4 777
lowQualScore : . . .. . .. ............. . . . .. . ......... .. . . . .... . . .................... .. . ...... . . . . . . ...... . ... . . . . .............................. . ... . ...... .... . . . ...
lowQualScore : 0 0 00 2 22 4444444444444 7 7 0 66 7 888888888 11 8 0 2 6666 9 1 44444444444444444444 11 3 444444 7 3 0 9 3 8 222222 1 333 0 7 4 3 111111111111111111111111111111 9 000 2 999999 7777 4 5 4 888
consensus : NNNTAGAGGTGGGTACCGCGA-GAAAAAA-GTAC--CATGGTATACCGCGT--TTTTTTAGTGAGTA--G-----CG--GTATGTACCACGGTATACTNTGTCATTTCTTAAGGCCAAGATGTCTCCAAATATCAGATTTGC--CAC-C-TT--GTTGTGAACAATTT-CCCATTCGTCCGCCATTTTGATTACGC----TCGATGTA-G-C--GT-GGTATCAC-T-GTGATGATTTATTTTCAATGGTAACATAAACAC------CAAGTAAAACTGGTCTGATAATGCGTTACTTTTACAATTAAGACAACTAAANACTTTAAAAAGCCGAAATATTACTTTCTTAAGTAAA----CGGACACAGAAATGCGACACCTTTTCACTTCAGTAATTTCCGTAAACACTC-GGT-ACACG--GAAATCTGCC---GGAAAAAACGGTAC---TCCATAATAGTACCGCGGT------ATGTACCGGCGCAGCTAAAAA----CCGCGGTATACCGG-TTTTACCGCGCAGCTC---TATA
Reference ( family-66 ) : NNNTAGAGGTGGGTACCGCGA-GAAAAAA-GTAC--CATGGTATACCGCGT--TTTTTTAGTGAGTA--G-----CG--GTATGTACCACGGTATACTNTGTCATTTCTTAAGGCCAAGATGTCTCCAAATATCAGATTTGC--CAC-C-TT--GTTGTGAACAATTT-CCCATTCGTCCGCCATTTTGATTACGC----TCGATGTA-G-C--GT-GGTATCAC-T-GTGATGATTTATTTTCAATGGTAACATAAACAC------CAAGTAAAACTGGTCTGATAATGCGTTACTTTTACAATTAAGACAACTAAANACTTTAAAAAGCCGAAATATTACTTTCTTAAGTAAA----CGGACACAGAAATGCGACACNTTTTCACTTCAGTAATTTCCGTAAACACTC-GGT-ACACG--GAAATCTGCT---GNAAAAAACGGTAC---TCCATAATAGTACCGCGGT------ATGTACCGGCGCAGCTAAAAA----CCGCGGTATACCGG-TTTTACCGCGCAGCTC---TATA
gi|1 : TACCACAT--TATTTTAGTACATG--GTATTTCA--GCATGTACCACAG----CTATGTCATTTCTTAAGGT-----TGTCTCTAAATATCAGATTTAC--CAC-TGTT--GTGGTGAACAATAT-CTCATTTGTCACCCATTTTGATTG------------GTA-T-T---T-GGT--------GTGATGATTT-TGTTCAATG-------AAATAC------AAAGAAAAACTGGTCTGATAATATAATACTTTAACAATTGAGACAACTAAA---------AAGCCGAAATATTACTTATTTA-GTAAA----TGGACACAGAAATGCAACATATTTCCACTTCAATAATTTACGTATTTATTC-AGT--TACA--GAAAT-TGCTGGGGGAAAAAATGGTAC---TCCATAATGGTACTGTGGT------ATGGACCACTGCAACTGAAAA----CCAC
gi|10 : ggcaataagaggtgggACAACTAAACACTTTAAAAAGCAGAAATATTGCTCTGTAAAGTAAA----CAGAAACAGAAATactaattggaatgtaatgaaaacttatgattaggtgatttttaatgttgcaaaaagaacacattttgatgcaagtcattaataggcattcattatcatatt
gi|10 : GTAAACA-----G--AAACA--GAAAT-TGCT---GAAAAAAATTGTAC---TCCATAATAGTACCACAATTATATAATGTATTGGTGCAGCTAAAAG----CCATGATGTACCAG-TTTTATCGCACAGTTC---tgctgaaaaaaattgtactccataatagtaccacaattatataatgtattggtgcagctaaaagccatgatgtaccagttttatcgcacagttctggcgcaca
gi|11 : acaactaaacactttaaaaagcagaaatattgctctgtaaaGCCAAAATATTACT-----AAGTAAA----TGGACACAAAAATACAATATGTTTTCACTTCAGTAATTTCCGTAAACACTT-GGT-A-ACG--AAAATT--CT---CGTAAAAACGGTTC---TCCATAATAGTACCATGAT------ATGTACCAAC-TAACTAAAAA----CCggcgcaca
gi|12 : cTAGAGATGGGTACCGCGA-GACAAAA-GTAT--CACAATAAATTGCGT--TCCTT-AGTGAGTACCG-----CG--GTATGTACCATTGCATACTATGTCATTTCTTAAGGCTAAAATCTCTTCAAATATCAGATTTGC--CATGC-TT--GTTGTG
gi|13 : atGTCATTTCTTTATGCCAAAATATCTCCAAATATCAGATTTGC--------TT--GTTGTGAACAATTT-TTCATTTGTCTGCCATTTTGATTACAC----CTGA-GTA-G-
gi|14 : aatgTAC---TCCATAATAGTAACAAAGT-------TGTACCGGCGCAAC-AAAAAGAACCCGTGATAAACCAGCTTTTACTGCACACATC---TAtcaatcttatcagatgtggtactt
gi|16 : GT------ATGTACCAGTGCAGCTAAAAA----CAG-GGTATACCGG-ATTTACTGCGCAGCTT---TAatgcacgt
gi|2 : TAGAGGTGGGTACTGCGA-GAAAAAAAGTAC--AATGGTATATCATGT--TTTTTTAGTGAGT---G-----CA--GCATGTACTATGTTAAACCATGTCATTTCTCATGGTCAAAATGTCTCCAAATATCAGATTTGTTTC-C-C-TT--GTTGTGAACAATTT-CCCATTCGTCCGCCATTCTGATTACACATCCTCGATGTA-GTC--GTTAGTATCACAT-GTGATGTTTTATTTTAAATGGTAACATAAATAC------CAAGTAAAAATGGTCTGATAATGTATTACTTTTACAATTGAGATAACTAAAAACTTTAAAAAGCAATAATATTACTTTCTTAGGTAAA----CATACACAAAAATATGACAACTTTTAACTTTGGTAATTTCCATAAACTCCCTGATAACATAATGGAATCTGCC----TATAAAATAGTAC---TTCGTAATAGTACCACAGT------TTGGGCCAATACAGCTAAAAA-----TGTGGTATAGCAG-TTTTACAGCTCAACTC---TATA
gi|3 : ctaTAGAGGTAGGTAATGCGA-GAAAAAA-GTAC--CATGTTATACCACAA--TTTTTTAGTGAGTA--C-----CACTGTATGTACCATGGTATCTTTTGTCATTTCTTAAGGCCAAGATGTCTCTAAATATCAGATTTGC--CACTC-TT--GTTTTGAGCAATTTCCCCATTCGTCCGCCATTATGATGACGT----TCAATGCAGG-CG-GT-GGTATCAC---GTGTTGATTTATTTTCAATGGTAATATAGACAC------CAAGTTAAA-----CTGATAATGCGGTTCATTTACAATTCAG--------AAACTTTAAAAAGCCAAAATATTACTTTATTAAGTAAACACTCGGTCACGGAAAT
gi|3 : catTTACTTTATTAA-----GTAAACACTC-GGT--CACG--GAAAT-TGCC---GTAAAAG-CGATAC---TCCATAATTGCACCATGGT------ATGTACTGGCGCAACTAAAAA----CGGGAATATATTGG-CATTACCATGCAGCTC---TAtgccgtaaaagcgatactccataattgcaccatggtatgtactggcgcaactaaaaacgggaatatattggcattaccatgcagctctaatgatca
gi|4 : cattagaggtaggtaatgcgagaaaaaagtaccatgttataccacaattttttagtgagtaccactgtatgtaccatggtatcttttgtcatttcttaaggccaagatgtctctaaatatcagatttgccactcttgttttgagcaatttccccattcgtccgccattatgatgacgttcaatgcaggcggtggtatcacgtgttgatttattttcaatggtaatatagacaccaagttaaactgataatgcggttcatttacaattcagaaactttaaaaagccaaaataTGTTATTTCTTTAGATTGAAATGTCTCTAAATATCA-ATTTGC--CACAC-TT--GT---GAACAATTT-CTAATTTGTTCGCCATTTTGATTATGC----TCGAGGTA-G-TTGAT-GGTATTAC-TTGTGATGATTTATTTTCAATTATAATATAAATAC------CAAGTAAAACTGGTCTGAAAATGCGTT----CTACATTTATGACAATTAAAACCTTTAAAACCCCAAAATATCACTTTCTT--------------------AAAT-----ACCTTTCTACTTCTGT---TT--------------GT-----G--AAAAT-TGCCCC-AAAAAAAACAGTAC---TCCATAATAATACCACAGT------ATGAACCGGCGCAGCTAAAAA----CTGCAGTATATGGG-TTTTACTGCGCAGCTCAAATATAatgatca
gi|5 : gAAGATTTCTTCAAATATCAGATTTG----AC-------------AACAATTT-CCCATTCATCTTCCATTTTGATTACGC----TCGATG------------GTATCGCAT-GTGATGATTTAATTTCAACAATAACATAAACACTTCATACAAGTAAAACTGATCTGATAATGTGTTACTTTTACACTTAAGACAACTTAAAACATTAAAA-GCCACAACATTACTTTCTAAAG----------------GAAATG-GACACTTTTTCACTTCAGTAATTTCCATAAACACTC-GGT--CATG--GGAATCAA-----AGAAAAAATGGTACTAATCCTTAATAGTACCGCGGT------ATGTACCGGCACAACTAAAAA----CTGTGGTTTACTGG-TTTTAATGCACAGCTT---TAcaagcata
gi|6 : -T-GTGACAATTTATTTTCAATAGTAA----AACA-----------TAAAACTGGACTGATAATGCGTTACTTTTACAATTAAGACAACTAAACGTGTTAAAAGGCCGAAAAGTTAATTTCTTAAGTAAA----CAGACACAAAAA--AAACACCTTTACACTTCAGTTATTTCCGTAAACACTT-GG-------------TCT--------------CAGCAT---T--ATA---GTACCGCAGT------ATATACGAGCTCAACTTAAAA----CTGCTGTATACCAG-TTTTACCGTGCAGCTC---TAT
gi|7 : cccattcaatgttttaagAGAGGTGGGTACCAGGG-GAAATAATGTAA--CGTGGTATATTGCAG--TTCTTTAGTGAGTATTG-----CG--GTATGTACCACAATATATTGTATACTTTCTTAAGG---ATCTGTCTCCAAATATCAGATATGC--C-C-C-TTTTGTTGTGAACAATAT-CTCATTTGTCTGCCATTTTGATTACGC----TTGAgg
gi|7 : agcACTGGTCTGATAATACATTACTTTTACAAAAAAGATTACTAAATACTctggtctgataatacattacttttacaaaaaagattactaaatact
gi|8 : agcagaggtgggtaccaggggaaataatgtaacgtggtatattgcagttctttagtgagtattgcggtatgtaccacaatatattgtatactttcttaaggatctgtctccaaatatcagatatgccccttttgttgtgaacaatatctcatttgtctgccattttgattacgcttgGGTACTGCGATAAAAAAA-GTACACCATGGTATACCCTGTCATTTCTTA
gi|8 : gtACCATGGTATACCCTGTCATTTCTTAAGGCCAAGATGTTTCCAAAT-T---GTTT--------C-TT--ATTGTGAACAATTT-CCCATTCATCCGCCATTTTGATTATAC----TCAATGTA------------ATCA-------ATGGTATAGTTTCAATAGTTACATAAATAC------CAAGTAAAACTTGTCTGATAATGCaggccaagatgtttccaaattgtttcttattgtgaacaatttcccattcatccgccattttgattatactcaatgtaatcaatggtatagtttcaatagttacataaataccaagtaaaacttgtctgataatgcctc
gi|9 : gtggtactgcgataaaaaaagtacACAACTAAACACTTTAAAAAGCAGAAATATTGCTCTGTAAAGTAAA----CAGAAACAGAAATctc
gi|9 : GTAAACA-----G--AAACA--GAAAT-TGCT---GAAAAAAATTGTAC---TCCATAATAGTACCACAATTATATAATGTATTGGTGCAGCTAAAAG----CCATGATGTACCAG-TTTTATCGCACAGTTC---tgctgaaaaaaattgtactccataatagtaccacaattatataatgtattggtgcagctaaaagccatgatgtaccagttttatcgcacagttctggcgcaca
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TTAAGACACTGCAAAGCTAAGAAAATGACAAGTTGATAGATACATTATAATAATT
Alignments
lowQualScore : 1 11 4444444444444 222222222 1111 55555555555555555555 111111 111111 111 5555555555555555555555555555555 222222
lowQualScore : 8 6 11 2 99 1111111111111 0 1 1 55 2 999999999 66 1 5 0 0000 4 0 33333333333333333333 22 5 666666 1 5 2 2 2 111111 1 999 1 1 1 4 2222222222222222222222222222222 0 777 1 000000 7777 0 5 4 777
lowQualScore : . . .. . .. ............. . . . .. . ......... .. . . . .... . . .................... .. . ...... . . . . . ...... . ... . . . . ............................... . ... . ...... .... . . . ...
lowQualScore : 0 0 00 2 22 4444444444444 7 7 0 66 7 888888888 11 8 0 2 6666 9 1 44444444444444444444 11 3 444444 7 3 0 9 3 222222 1 333 0 7 4 3 1111111111111111111111111111111 9 000 2 999999 7777 4 5 4 888
consensus : NNNTAGAGGTGGGTACCGCGA-GAAAAAA-GTAC--CATGGTATACCGCGT--TTTTTTAGTGAGTA--G-----CG--GTATGTACCACGGTATACTNTGTCATTTCTTAAGGCCAAGATGTCTCCAAATATCAGATTTGC--CAC-C-TT--GTTGTGAACAATTT-CCCATTCGTCCGCCATTTTGATTACGC----TCGATGTA-G-C--GT-GGTATCAC-T-GTGATGATTTATTTTCAATGGTAACATAAACAC------CAAGTAAAACTGGTCTGATAATGCGTTACTTTTACAATTAAGACAACTAAANACTTTAAAAAGCCGAAATATTACTTTCTTAAGTAAA----CGGACACAGAAATGCGACACCTTTTCACTTCAGTAATTTCCGTAAACACTC-GGT-ACACG--GAAAT--CTGCC--GGAAAAAACGGTAC---TCCATAATAGTACCGCGGT------ATGTACCGGCGCAGCTAAAAA----CCGCGGTATACCGG-TTTTACCGCGCAGCTC---TATA
Reference ( family-66 ) : NNNTAGAGGTGGGTACCGCGA-GAAAAAA-GTAC--CATGGTATACCGCGT--TTTTTTAGTGAGTA--G-----CG--GTATGTACCACGGTATACTNTGTCATTTCTTAAGGCCAAGATGTCTCCAAATATCAGATTTGC--CAC-C-TT--GTTGTGAACAATTT-CCCATTCGTCCGCCATTTTGATTACGC----TCGATGTA-G-C--GT-GGTATCAC-T-GTGATGATTTATTTTCAATGGTAACATAAACAC------CAAGTAAAACTGGTCTGATAATGCGTTACTTTTACAATTAAGACAACTAAANACTTTAAAAAGCCGAAATATTACTTTCTTAAGTAAA----CGGACACAGAAATGCGACACCTTTTCACTTCAGTAATTTCCGTAAACACTC-GGT-ACACG--GAAAT--CTGCC--GGAAAAAACGGTAC---TCCATAATAGTACCGCGGT------ATGTACCGGCGCAGCTAAAAA----CCGCGGTATACCGG-TTTTACCGCGCAGCTC---TATA
gi|1 : TACCACAT--TATTTTAGTACATG--GTATTTCA--GCATGTACCACAG----CTATGTCATTTCTTAAGGT-----TGTCTCTAAATATCAGATTTAC--CAC-TGTT--GTGGTGAACAATAT-CTCATTTGTCACCCATTTTGATTG------------GTA-T-T---T-GGT--------GTGATGATTT-TGTTCAATG-------AAATAC------AAAGAAAAACTGGTCTGATAATATAATACTTTAACAATTGAGACAACTAAA---------AAGCCGAAATATTACTTATTT-AGTAAA----TGGACACAGAAATGCAACATATTTCCACTTCAATAATTTACGTATTTATTC-AGT--TACA--GAAATTGCTGGG--GGAAAAAATGGTAC---TCCATAATGGTACTGTGGT------ATGGACCACTGCAACTGAAAA----CCAC
gi|10 : ggcaataagaggtgggACAACTAAACACTTTAAAAAGCAGAAATATTGCTCTGTAAAGTAAA----CAGAAACAGAAATactaattggaatgtaatgaaaacttatgattaggtgatttttaatgttgcaaaaagaacacattttgatgcaagtcattaataggcattcattatcatatt
gi|10 : GTAAACA-----G--AAACA--GAAAT---TGCT--GAAAAAAATTGTAC---TCCATAATAGTACCACAATTATATAATGTATTGGTGCAGCTAAAAG----CCATGATGTACCAG-TTTTATCGCACAGTTC---tgctgaaaaaaattgtactccataatagtaccacaattatataatgtattggtgcagctaaaagccatgatgtaccagttttatcgcacagttctggcgcaca
gi|11 : acaactaaacactttaaaaagcagaaatattgctctgtaaaGCCAAAATATTACT-----AAGTAAA----TGGACACAAAAATACAATATGTTTTCACTTCAGTAATTTCCGTAAACACTT-GGT-A-ACG--AAAAT--T--CT--CGTAAAAACGGTTC---TCCATAATAGTACCATGAT------ATGTACCAAC-TAACTAAAAA----CCggcgcaca
gi|12 : cTAGAGATGGGTACCGCGA-GACAAAA-GTAT--CACAATAAATTGCGT--TCCTT-AGTGAGTACCG-----CG--GTATGTACCATTGCATACTATGTCATTTCTTAAGGCTAAAATCTCTTCAAATATCAGATTTGC--CATGC-TT--GTTGTG
gi|13 : atGTCATTTCTTTATGCCAAAATATCTCCAAATATCAGATTTGC--------TT--GTTGTGAACAATTT-TTCATTTGTCTGCCATTTTGATTACAC----CTGA-GTA-G-
gi|14 : aatgTAC---TCCATAATAGTAACAAAGT-------TGTACCGGCGCAAC-AAAAAGAACCCGTGATAAACCAGCTTTTACTGCACACATC---TAtcaatcttatcagatgtggtactt
gi|16 : GT------ATGTACCAGTGCAGCTAAAAA----CAG-GGTATACCGG-ATTTACTGCGCAGCTT---TAatgcacgt
gi|2 : TAGAGGTGGGTACTGCGA-GAAAAAAAGTAC--AATGGTATATCATGT--TTTTTTAGTGAGT---G-----CA--GCATGTACTATGTTAAACCATGTCATTTCTCATGGTCAAAATGTCTCCAAATATCAGATTTGTTTC-C-C-TT--GTTGTGAACAATTT-CCCATTCGTCCGCCATTCTGATTACACATCCTCGATGTA-GTC--GTTAGTATCACAT-GTGATGTTTTATTTTAAATGGTAACATAAATAC------CAAGTAAAAATGGTCTGATAATGTATTACTTTTACAATTGAGATAACTAAAAACTTTAAAAAGCAATAATATTACTTTCTTAGGTAAA----CATACACAAAAATATGACAACTTTTAACTTTGGTAATTTCCATAAACTCCCTGATAACATAATGGAAT--CTGCC---TATAAAATAGTAC---TTCGTAATAGTACCACAGT------TTGGGCCAATACAGCTAAAAA-----TGTGGTATAGCAG-TTTTACAGCTCAACTC---TATA
gi|3 : ctaTAGAGGTAGGTAATGCGA-GAAAAAA-GTAC--CATGTTATACCACAA--TTTTTTAGTGAGTA--C-----CACTGTATGTACCATGGTATCTTTTGTCATTTCTTAAGGCCAAGATGTCTCTAAATATCAGATTTGC--CACTC-TT--GTTTTGAGCAATTTCCCCATTCGTCCGCCATTATGATGACGT----TCAATGCAGG-CG-GT-GGTATCAC---GTGTTGATTTATTTTCAATGGTAATATAGACAC------CAAGTTAAA-----CTGATAATGCGGTTCATTTACAATTCAG--------AAACTTTAAAAAGCCAAAATATTACTTTATTAAGTAAACACTCGGTCACGGAAAT
gi|3 : catTTACTTTATTAA-----GTAAACACTC-GGT--CACG--GAAAT---TGCC--GTAAAAG-CGATAC---TCCATAATTGCACCATGGT------ATGTACTGGCGCAACTAAAAA----CGGGAATATATTGG-CATTACCATGCAGCTC---TAtgccgtaaaagcgatactccataattgcaccatggtatgtactggcgcaactaaaaacgggaatatattggcattaccatgcagctctaatgatca
gi|4 : cattagaggtaggtaatgcgagaaaaaagtaccatgttataccacaattttttagtgagtaccactgtatgtaccatggtatcttttgtcatttcttaaggccaagatgtctctaaatatcagatttgccactcttgttttgagcaatttccccattcgtccgccattatgatgacgttcaatgcaggcggtggtatcacgtgttgatttattttcaatggtaatatagacaccaagttaaactgataatgcggttcatttacaattcagaaactttaaaaagccaaaataTGTTATTTCTTTAGATTGAAATGTCTCTAAATATCA-ATTTGC--CACAC-TT--GT---GAACAATTT-CTAATTTGTTCGCCATTTTGATTATGC----TCGAGGTA-G-TTGAT-GGTATTAC-TTGTGATGATTTATTTTCAATTATAATATAAATAC------CAAGTAAAACTGGTCTGAAAATGCGTT----CTACATTTATGACAATTAAAACCTTTAAAACCCCAAAATATCACTTTCTTA--------------------AAT-----ACCTTTCTACTTCTGT---TT--------------GT-----G--AAAAT---TGCCCCAAAAAAAACAGTAC---TCCATAATAATACCACAGT------ATGAACCGGCGCAGCTAAAAA----CTGCAGTATATGGG-TTTTACTGCGCAGCTCAAATATAatgatca
gi|5 : gAAGATTTCTTCAAATATCAGATTTG----AC-------------AACAATTT-CCCATTCATCTTCCATTTTGATTACGC----TCGATG------------GTATCGCAT-GTGATGATTTAATTTCAACAATAACATAAACACTTCATACAAGTAAAACTGATCTGATAATGTGTTACTTTTACACTTAAGACAACTTAAAACATTAAAA-GCCACAACATTACTTTCTAAAG----------------GAAATG-GACACTTTTTCACTTCAGTAATTTCCATAAACACTC-GGT--CATG--GGAAT--CAA----AGAAAAAATGGTACTAATCCTTAATAGTACCGCGGT------ATGTACCGGCACAACTAAAAA----CTGTGGTTTACTGG-TTTTAATGCACAGCTT---TAcaagcata
gi|6 : -T-GTGACAATTTATTTTCAATAGTAA----AACA-----------TAAAACTGGACTGATAATGCGTTACTTTTACAATTAAGACAACTAAACGTGTTAAAAGGCCGAAAAGTTAATTTCTTAAGTAAA----CAGACACAAAAA--AAACACCTTTACACTTCAGTTATTTCCGTAAACACTT-GG-------------T--CT-------------CAGCAT---T--ATA---GTACCGCAGT------ATATACGAGCTCAACTTAAAA----CTGCTGTATACCAG-TTTTACCGTGCAGCTC---TAT
gi|7 : cccattcaatgttttaagAGAGGTGGGTACCAGGG-GAAATAATGTAA--CGTGGTATATTGCAG--TTCTTTAGTGAGTATTG-----CG--GTATGTACCACAATATATTGTATACTTTCTTAAGG---ATCTGTCTCCAAATATCAGATATGC--C-C-C-TTTTGTTGTGAACAATAT-CTCATTTGTCTGCCATTTTGATTACGC----TTGAgg
gi|7 : agcACTGGTCTGATAATACATTACTTTTACAAAAAAGATTACTAAATACTctggtctgataatacattacttttacaaaaaagattactaaatact
gi|8 : agcagaggtgggtaccaggggaaataatgtaacgtggtatattgcagttctttagtgagtattgcggtatgtaccacaatatattgtatactttcttaaggatctgtctccaaatatcagatatgccccttttgttgtgaacaatatctcatttgtctgccattttgattacgcttgGGTACTGCGATAAAAAAA-GTACACCATGGTATACCCTGTCATTTCTTA
gi|8 : gtACCATGGTATACCCTGTCATTTCTTAAGGCCAAGATGTTTCCAAAT-T---GTTT--------C-TT--ATTGTGAACAATTT-CCCATTCATCCGCCATTTTGATTATAC----TCAATGTA------------ATCA-------ATGGTATAGTTTCAATAGTTACATAAATAC------CAAGTAAAACTTGTCTGATAATGCaggccaagatgtttccaaattgtttcttattgtgaacaatttcccattcatccgccattttgattatactcaatgtaatcaatggtatagtttcaatagttacataaataccaagtaaaacttgtctgataatgcctc
gi|9 : gtggtactgcgataaaaaaagtacACAACTAAACACTTTAAAAAGCAGAAATATTGCTCTGTAAAGTAAA----CAGAAACAGAAATctc
gi|9 : GTAAACA-----G--AAACA--GAAAT---TGCT--GAAAAAAATTGTAC---TCCATAATAGTACCACAATTATATAATGTATTGGTGCAGCTAAAAG----CCATGATGTACCAG-TTTTATCGCACAGTTC---tgctgaaaaaaattgtactccataatagtaccacaattatataatgtattggtgcagctaaaagccatgatgtaccagttttatcgcacagttctggcgcaca
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TTAAGACACTGCAAAGCTAAGAAAATGACAAGTTGATAGATACATTATAATAATT
Alignments
lowQualScore : 1 11 4444444444444 222222222 1111 55555555555555555555 111111 111111 111 5555555555555555555555555555555 222222
lowQualScore : 8 6 11 2 99 1111111111111 0 1 1 55 2 999999999 66 1 5 0 0000 4 0 33333333333333333333 22 5 666666 1 5 2 2 2 111111 1 999 1 1 1 4 2222222222222222222222222222222 0 777 1 000000 7777 0 5 4 777
lowQualScore : . . .. . .. ............. . . . .. . ......... .. . . . .... . . .................... .. . ...... . . . . . ...... . ... . . . . ............................... . ... . ...... .... . . . ...
lowQualScore : 0 0 00 2 22 4444444444444 7 7 0 66 7 888888888 11 8 0 2 6666 9 1 44444444444444444444 11 3 444444 7 3 0 9 3 222222 1 333 0 7 4 3 1111111111111111111111111111111 9 000 2 999999 7777 4 5 4 888
consensus : NNNTAGAGGTGGGTACCGCGA-GAAAAAA-GTAC--CATGGTATACCGCGT--TTTTTTAGTGAGTA--G-----CG--GTATGTACCACGGTATACTNTGTCATTTCTTAAGGCCAAGATGTCTCCAAATATCAGATTTGC--CAC-C-TT--GTTGTGAACAATTT-CCCATTCGTCCGCCATTTTGATTACGC----TCGATGTA-G-C--GT-GGTATCAC-T-GTGATGATTTATTTTCAATGGTAACATAAACAC------CAAGTAAAACTGGTCTGATAATGCGTTACTTTTACAATTAAGACAACTAAANACTTTAAAAAGCCGAAATATTACTTTCTTAAGTAAA----CGGACACAGAAATGCGACACCTTTTCACTTCAGTAATTTCCGTAAACACTC-GGT-ACACG--GAAAT--CTGCC--GGAAAAAACGGTAC---TCCATAATAGTACCGCGGT------ATGTACCGGCGCAGCTAAAAA----CCGCGGTATACCGG-TTTTACCGCGCAGCTC---TATA
Reference ( family-66 ) : NNNTAGAGGTGGGTACCGCGA-GAAAAAA-GTAC--CATGGTATACCGCGT--TTTTTTAGTGAGTA--G-----CG--GTATGTACCACGGTATACTNTGTCATTTCTTAAGGCCAAGATGTCTCCAAATATCAGATTTGC--CAC-C-TT--GTTGTGAACAATTT-CCCATTCGTCCGCCATTTTGATTACGC----TCGATGTA-G-C--GT-GGTATCAC-T-GTGATGATTTATTTTCAATGGTAACATAAACAC------CAAGTAAAACTGGTCTGATAATGCGTTACTTTTACAATTAAGACAACTAAANACTTTAAAAAGCCGAAATATTACTTTCTTAAGTAAA----CGGACACAGAAATGCGACACCTTTTCACTTCAGTAATTTCCGTAAACACTC-GGT-ACACG--GAAAT--CTGCC--GGAAAAAACGGTAC---TCCATAATAGTACCGCGGT------ATGTACCGGCGCAGCTAAAAA----CCGCGGTATACCGG-TTTTACCGCGCAGCTC---TATA
gi|1 : TACCACAT--TATTTTAGTACATG--GTATTTCA--GCATGTACCACAG----CTATGTCATTTCTTAAGGT-----TGTCTCTAAATATCAGATTTAC--CAC-TGTT--GTGGTGAACAATAT-CTCATTTGTCACCCATTTTGATTG------------GTA-T-T---T-GGT--------GTGATGATTT-TGTTCAATG-------AAATAC------AAAGAAAAACTGGTCTGATAATATAATACTTTAACAATTGAGACAACTAAA---------AAGCCGAAATATTACTTATTT-AGTAAA----TGGACACAGAAATGCAACATATTTCCACTTCAATAATTTACGTATTTATTC-AGT--TACA--GAAATTGCTGGG--GGAAAAAATGGTAC---TCCATAATGGTACTGTGGT------ATGGACCACTGCAACTGAAAA----CCAC
gi|10 : ggcaataagaggtgggACAACTAAACACTTTAAAAAGCAGAAATATTGCTCTGTAAAGTAAA----CAGAAACAGAAATactaattggaatgtaatgaaaacttatgattaggtgatttttaatgttgcaaaaagaacacattttgatgcaagtcattaataggcattcattatcatatt
gi|10 : GTAAACA-----G--AAACA--GAAAT---TGCT--GAAAAAAATTGTAC---TCCATAATAGTACCACAATTATATAATGTATTGGTGCAGCTAAAAG----CCATGATGTACCAG-TTTTATCGCACAGTTC---tgctgaaaaaaattgtactccataatagtaccacaattatataatgtattggtgcagctaaaagccatgatgtaccagttttatcgcacagttctggcgcaca
gi|11 : acaactaaacactttaaaaagcagaaatattgctctgtaaaGCCAAAATATTACT-----AAGTAAA----TGGACACAAAAATACAATATGTTTTCACTTCAGTAATTTCCGTAAACACTT-GGT-A-ACG--AAAAT--T--CT--CGTAAAAACGGTTC---TCCATAATAGTACCATGAT------ATGTACCAAC-TAACTAAAAA----CCggcgcaca
gi|12 : cTAGAGATGGGTACCGCGA-GACAAAA-GTAT--CACAATAAATTGCGT--TCCTT-AGTGAGTACCG-----CG--GTATGTACCATTGCATACTATGTCATTTCTTAAGGCTAAAATCTCTTCAAATATCAGATTTGC--CATGC-TT--GTTGTG
gi|13 : atGTCATTTCTTTATGCCAAAATATCTCCAAATATCAGATTTGC--------TT--GTTGTGAACAATTT-TTCATTTGTCTGCCATTTTGATTACAC----CTGA-GTA-G-
gi|14 : aatgTAC---TCCATAATAGTAACAAAGT-------TGTACCGGCGCAAC-AAAAAGAACCCGTGATAAACCAGCTTTTACTGCACACATC---TAtcaatcttatcagatgtggtactt
gi|16 : GT------ATGTACCAGTGCAGCTAAAAA----CAG-GGTATACCGG-ATTTACTGCGCAGCTT---TAatgcacgt
gi|2 : TAGAGGTGGGTACTGCGA-GAAAAAAAGTAC--AATGGTATATCATGT--TTTTTTAGTGAGT---G-----CA--GCATGTACTATGTTAAACCATGTCATTTCTCATGGTCAAAATGTCTCCAAATATCAGATTTGTTTC-C-C-TT--GTTGTGAACAATTT-CCCATTCGTCCGCCATTCTGATTACACATCCTCGATGTA-GTC--GTTAGTATCACAT-GTGATGTTTTATTTTAAATGGTAACATAAATAC------CAAGTAAAAATGGTCTGATAATGTATTACTTTTACAATTGAGATAACTAAAAACTTTAAAAAGCAATAATATTACTTTCTTAGGTAAA----CATACACAAAAATATGACAACTTTTAACTTTGGTAATTTCCATAAACTCCCTGATAACATAATGGAAT--CTGCC---TATAAAATAGTAC---TTCGTAATAGTACCACAGT------TTGGGCCAATACAGCTAAAAA-----TGTGGTATAGCAG-TTTTACAGCTCAACTC---TATA
gi|3 : ctaTAGAGGTAGGTAATGCGA-GAAAAAA-GTAC--CATGTTATACCACAA--TTTTTTAGTGAGTA--C-----CACTGTATGTACCATGGTATCTTTTGTCATTTCTTAAGGCCAAGATGTCTCTAAATATCAGATTTGC--CACTC-TT--GTTTTGAGCAATTTCCCCATTCGTCCGCCATTATGATGACGT----TCAATGCAGG-CG-GT-GGTATCAC---GTGTTGATTTATTTTCAATGGTAATATAGACAC------CAAGTTAAA-----CTGATAATGCGGTTCATTTACAATTCAG--------AAACTTTAAAAAGCCAAAATATTACTTTATTAAGTAAACACTCGGTCACGGAAAT
gi|3 : catTTACTTTATTAA-----GTAAACACTC-GGT--CACG--GAAAT---TGCC--GTAAAAG-CGATAC---TCCATAATTGCACCATGGT------ATGTACTGGCGCAACTAAAAA----CGGGAATATATTGG-CATTACCATGCAGCTC---TAtgccgtaaaagcgatactccataattgcaccatggtatgtactggcgcaactaaaaacgggaatatattggcattaccatgcagctctaatgatca
gi|4 : cattagaggtaggtaatgcgagaaaaaagtaccatgttataccacaattttttagtgagtaccactgtatgtaccatggtatcttttgtcatttcttaaggccaagatgtctctaaatatcagatttgccactcttgttttgagcaatttccccattcgtccgccattatgatgacgttcaatgcaggcggtggtatcacgtgttgatttattttcaatggtaatatagacaccaagttaaactgataatgcggttcatttacaattcagaaactttaaaaagccaaaataTGTTATTTCTTTAGATTGAAATGTCTCTAAATATCA-ATTTGC--CACAC-TT--GT---GAACAATTT-CTAATTTGTTCGCCATTTTGATTATGC----TCGAGGTA-G-TTGAT-GGTATTAC-TTGTGATGATTTATTTTCAATTATAATATAAATAC------CAAGTAAAACTGGTCTGAAAATGCGTT----CTACATTTATGACAATTAAAACCTTTAAAACCCCAAAATATCACTTTCTTA--------------------AAT-----ACCTTTCTACTTCTGT---TT--------------GT-----G--AAAAT---TGCCCCAAAAAAAACAGTAC---TCCATAATAATACCACAGT------ATGAACCGGCGCAGCTAAAAA----CTGCAGTATATGGG-TTTTACTGCGCAGCTCAAATATAatgatca
gi|5 : gAAGATTTCTTCAAATATCAGATTTG----AC-------------AACAATTT-CCCATTCATCTTCCATTTTGATTACGC----TCGATG------------GTATCGCAT-GTGATGATTTAATTTCAACAATAACATAAACACTTCATACAAGTAAAACTGATCTGATAATGTGTTACTTTTACACTTAAGACAACTTAAAACATTAAAA-GCCACAACATTACTTTCTAAAG----------------GAAATG-GACACTTTTTCACTTCAGTAATTTCCATAAACACTC-GGT--CATG--GGAAT--CAA----AGAAAAAATGGTACTAATCCTTAATAGTACCGCGGT------ATGTACCGGCACAACTAAAAA----CTGTGGTTTACTGG-TTTTAATGCACAGCTT---TAcaagcata
gi|6 : -T-GTGACAATTTATTTTCAATAGTAA----AACA-----------TAAAACTGGACTGATAATGCGTTACTTTTACAATTAAGACAACTAAACGTGTTAAAAGGCCGAAAAGTTAATTTCTTAAGTAAA----CAGACACAAAAA--AAACACCTTTACACTTCAGTTATTTCCGTAAACACTT-GG-------------T--CT-------------CAGCAT---T--ATA---GTACCGCAGT------ATATACGAGCTCAACTTAAAA----CTGCTGTATACCAG-TTTTACCGTGCAGCTC---TAT
gi|7 : cccattcaatgttttaagAGAGGTGGGTACCAGGG-GAAATAATGTAA--CGTGGTATATTGCAG--TTCTTTAGTGAGTATTG-----CG--GTATGTACCACAATATATTGTATACTTTCTTAAGG---ATCTGTCTCCAAATATCAGATATGC--C-C-C-TTTTGTTGTGAACAATAT-CTCATTTGTCTGCCATTTTGATTACGC----TTGAgg
gi|7 : agcACTGGTCTGATAATACATTACTTTTACAAAAAAGATTACTAAATACTctggtctgataatacattacttttacaaaaaagattactaaatact
gi|8 : agcagaggtgggtaccaggggaaataatgtaacgtggtatattgcagttctttagtgagtattgcggtatgtaccacaatatattgtatactttcttaaggatctgtctccaaatatcagatatgccccttttgttgtgaacaatatctcatttgtctgccattttgattacgcttgGGTACTGCGATAAAAAAA-GTACACCATGGTATACCCTGTCATTTCTTA
gi|8 : gtACCATGGTATACCCTGTCATTTCTTAAGGCCAAGATGTTTCCAAAT-T---GTTT--------C-TT--ATTGTGAACAATTT-CCCATTCATCCGCCATTTTGATTATAC----TCAATGTA------------ATCA-------ATGGTATAGTTTCAATAGTTACATAAATAC------CAAGTAAAACTTGTCTGATAATGCaggccaagatgtttccaaattgtttcttattgtgaacaatttcccattcatccgccattttgattatactcaatgtaatcaatggtatagtttcaatagttacataaataccaagtaaaacttgtctgataatgcctc
gi|9 : gtggtactgcgataaaaaaagtacACAACTAAACACTTTAAAAAGCAGAAATATTGCTCTGTAAAGTAAA----CAGAAACAGAAATctc
gi|9 : GTAAACA-----G--AAACA--GAAAT---TGCT--GAAAAAAATTGTAC---TCCATAATAGTACCACAATTATATAATGTATTGGTGCAGCTAAAAG----CCATGATGTACCAG-TTTTATCGCACAGTTC---tgctgaaaaaaattgtactccataatagtaccacaattatataatgtattggtgcagctaaaagccatgatgtaccagttttatcgcacagttctggcgcaca
blockSeqs : T A AC G CA ACCGCG C A CT A CCATGC TT T C ATCC T GTCGTTAGTATCACAT GG C TTCATA A C A G A CACTCG A ACA G A T C CCCTGATAACATAATGGAATCTGCCT TAA A TATATA GAAC T C AAA
blockSeqs : . T . A . ACCACT T A CC A TTTCCC . T . . T GTTGATGGTATTACTT GG T . T A A C T CA C ATG C A T C CTCGGTCACGGAAATTGCCGT . A TATATA . T . .
blockSeqs : . . . A . ATTGCG T T TC A CCACTC . T . . G GGCGGTGGTATCAC TA T . A A A A T TG C GG C A T C CTTGGTAACGAAAATTCTCG . A . . T . .
blockSeqs : . . . G . GCA T G CC G CCACAC . T . . T GTATCGCAT AA C . A A C C T CA C AA T A T C CTCGGTCATGGGAATCAAAG . A . . G . .
blockSeqs : C . T C TT A CCCC . T . . T ATCA AG C . A A G C A CA C . C T . . GAAACAGAAATTGCTGA . A . . C . .
blockSeqs : CC G AC . T . . . AG . . . C A C T CA A . . . GAAACAGAAATTGCTGA . A . . T . .
blockSeqs : . T C . . . . T . G A . . GTGAAAATTGCCCCAA . G . . C . .
blockSeqs : G C . . C . . . . CTTGGTCT . G . . T . .
blockSeqs : . A . . .
blockSeqs : . .
blockSeqCons : ACCGCG******* CC GTCGGTGGTATCACT***** AG ACG CTCGGTAACGGAAATTGCCGN**********
originalCons : NNNTAGAGGTGGGTACCGCGA-GAAAAAA-GTAC--CATGGTATACCGCGT--TTTTTTAGTGAGTA--G-----CG--GTATGTACCACGGTATACTNTGTCATTTCTTAAGGCCAAGATGTCTCCAAATATCAGATTTGC--CAC-C-TT--GTTGTGAACAATTT-CCCATTCGTCCGCCATTTTGATTACGC----TCGATGTA-G-C--GT-GGTATCAC-T-GTGATGATTTATTTTCAATGGTAACATAAACAC------CAAGTAAAACTGGTCTGATAATGCGTTACTTTTACAATTAAGACAACTAAANACTTTAAAAAGCCGAAATATTACTTTCTTAAGTAAA----CGGACACAGAAATGCGACACCTTTTCACTTCAGTAATTTCCGTAAACACTC-GGT-ACACG--GAAAT--CTGCC--GGAAAAAACGGTAC---TCCATAATAGTACCGCGGT------ATGTACCGGCGCAGCTAAAAA----CCGCGGTATACCGG-TTTTACCGCGCAGCTC---TATA
finalCons : NNNTAGAGGTGGGTACCGCGA-GAAAAAA-GTAC--CATGGTATACCGCGT--TTTTTTAGTGAGTACCGCG-------GTATGTACCACGGTATACTNTGTCATTTCTTAAGGCCAAGATGTCTCCAAATATCAGATTTGC--CAC-C-TT--GTTGTGAACAATTT-CCCATTCGTCCGCCATTTTGATTACGC----TCGATGTAGTCGGTGGTATCACT-----GTGATGATTTATTTTCAATAGTAACATAAACAC------CAAGTAAAACTGGTCTGATAATGCGTTACTTTTACAATTAAGACAACTAAANACTTTAAAAAGCCGAAATATTACTTTCTTAAGTAAA----CGGACACAGAAATACGACACCTTTTCACTTCAGTAATTTCCGTAAACACTCGGTAACGGAAATTGCCGN----------AAAAAACGGTAC---TCCATAATAGTACCGCGGT------ATGTACCGGCGCAGCTAAAAA----CCGCGGTATACCGG-TTTTACCGCGCAGCTC---TATA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TTAAGACACTGCAAAGCTAAGAAAATGACAAGTTGATAGATACATTATAATAATT
Alignments
lowQualScore : 2 1111 2222222 3333333333 1111 1111 2222222 111111 111111 11 1111111111111111 111111111 222222
lowQualScore : 0 0 0 1 0 3333 2 1111111 0 1 1 55 2 5555555555 1 5 0 0000 5 0000 4444444 22 5 666666 5 2 2 2 2 111111 1 77 1 1 22 9999999999999999 888888888 0 777 1 000000 7777 0 5 4 777
lowQualScore : . . . . . .... . ....... . . . .. . .......... . . . .... . .... ....... .. . ...... . . . . . ...... . .. . . .. ................ ......... . ... . ...... .... . . . ...
lowQualScore : 0 2 2 0 8 3333 2 7777777 7 7 0 66 7 9999999999 8 0 2 6666 0 2222 6666666 99 3 444444 1 6 0 9 3 222222 1 22 0 7 11 8888888888888888 111111111 9 000 2 999999 7777 4 5 4 888
consensus : NNNTAGAGGTGGGTACCGCGAGAAAAAA-GTACCACGGTATATCGCGTTTTTTTAGTG---AGTACCGCGGTA-------TGTACCACGGTATACTNTGTCATTTCTTAAGGCCAAGATGTCTCCAAATATCAGATTTGC--CAC-C--TTGTTGTGAACAATTT-CCCATTCGTCCGCCATTTTGATTACGC----TCGATGTAGTCGATGGTATCA-C-T-GTGATGATTTATTTTCAATGGTAACATAAACAC------CAAGTAAAACTGGTCTGATAATGCGTTACTTTTACAATTAAGACAACTAAANACTTTAAAAAGCCGAAATATTACTTTCTTAAGTAAA----CGGACACAGAAATACGACACCTTTTCACTTCAGTAATTTCCGTAAACACTC-GGTAAC-----GGAAATTG--CC---GNAAAAAACGGTACT---CCATAATAGTACCGCGGT------ATGTACCGGCGCAGCTAAAAA----CCGCGGTATACCGG-TTTTACCGCGCAGCTC---TATA
Reference ( family-66 ) : NNNTAGAGGTGGGTACCGCGAGAAAAAA-GTACCATGGTATACCGCGTTTTTTTAGTG---AGTACCGCGGTA-------TGTACCACGGTATACTNTGTCATTTCTTAAGGCCAAGATGTCTCCAAATATCAGATTTGC--CAC-C--TTGTTGTGAACAATTT-CCCATTCGTCCGCCATTTTGATTACGC----TCGATGTAGTCGGTGGTATCA-C-T-GTGATGATTTATTTTCAATAGTAACATAAACAC------CAAGTAAAACTGGTCTGATAATGCGTTACTTTTACAATTAAGACAACTAAANACTTTAAAAAGCCGAAATATTACTTTCTTAAGTAAA----CGGACACAGAAATACGACACCTTTTCACTTCAGTAATTTCCGTAAACACTC-GGTAAC-----GGAAATTG--CC---GNAAAAAACGGTACT---CCATAATAGTACCGCGGT------ATGTACCGGCGCAGCTAAAAA----CCGCGGTATACCGG-TTTTACCGCGCAGCTC---TATA
gi|1 : TACCACATTATTTTAGTACATGGTATTTCAGCA-------TGTACCACAG----CTATGTCATTTCTTAAGGT-----TGTCTCTAAATATCAGATTTAC--CAC-TG-TTGTGGTGAACAATAT-CTCATTTGTCACCCATTTTGATTG------------GTATTTGG-----------T-GTGATGATTT-TGTTCAATG-------AAATAC------AAAGAAAAACTGGTCTGATAATATAATACTTTAACAATTGAGACAAC---------TAAAAAGCCGAAATATTACTTATTT-AGTAAA----TGGACACAGAAATGCAACATATTTCCACTTCAATAATTTACGTATTTATTC-AGTTAC-----AGAAATTG--CTGGGGGAAAAAATGGTACT---CCATAATGGTACTGTGGT------ATGGACCACTGCAACTGAAAA----CCAC
gi|10 : ggcaataagaggtgggACAACTAAACACTTTAAAAAGCAGAAATATTGCTCTGTAAAGTAAA----CAGAAACAGAAATactaattggaatgtaatgaaaacttatgattaggtgatttttaatgttgcaaaaagaacacattttgatgcaagtcattaataggcattcattatcatatt
gi|10 : GTAAACA-----GAAAC-----AGAAATTG--CT---GAAAAAAATTGTACT---CCATAATAGTACCACAATTATATAATGTATTGGTGCAGCTAAAAG----CCATGATGTACCAG-TTTTATCGCACAGTTC---tgctgaaaaaaattgtactccataatagtaccacaattatataatgtattggtgcagctaaaagccatgatgtaccagttttatcgcacagttctggcgcaca
gi|11 : acaactaaacactttaaaaagcagaaatattgctctgtaaaGCCAAAATATTACT-----AAGTAAA----TGGACACAAAAATACAATATGTTTTCACTTCAGTAATTTCCGTAAACACTT-GGTAAC-----GAAAATTC--TC---GT-AAAAACGGTTCT---CCATAATAGTACCATGAT------ATGTACCAAC-TAACTAAAAA----CCggcgcaca
gi|12 : cTAGAGATGGGTACCGCGAGACAAAA-GTATCACAATAAATTGCGTTCCTT-AGTG---AGTACCGCGGTA-------TGTACCATTGCATACTATGTCATTTCTTAAGGCTAAAATCTCTTCAAATATCAGATTTGC--CATGC--TTGTTGTG
gi|13 : atGTCATTTCTTTATGCCAAAATATCTCCAAATATCAGATTTGC---------TTGTTGTGAACAATTT-TTCATTTGTCTGCCATTTTGATTACAC----CTGA-GTAGTCAATCTTATCAGA-T-GTGGT
gi|14 : aatgTACT---CCATAATAGTAACAAAGT-------TGTACCGGCGCAAC-AAAAAGAACCCGTGATAAACCAGCTTTTACTGCACACATC---TAactt
gi|16 : GT------ATGTACCAGTGCAGCTAAAAA----CAG-GGTATACCGG-ATTTACTGCGCAGCTT---TAatgcacgt
gi|2 : TAGAGGTGGGTACTGCGAGAAAAAAAGTACAATGGTATATCATGTTTTTTTAGTG---AGT---GCAGCA-------TGTACTATGTTAAACCATGTCATTTCTCATGGTCAAAATGTCTCCAAATATCAGATTTGTTTC-C-C--TTGTTGTGAACAATTT-CCCATTCGTCCGCCATTCTGATTACACATCCTCGATGTAGTCGTTAGTATCA-CAT-GTGATGTTTTATTTTAAATGGTAACATAAATAC------CAAGTAAAAATGGTCTGATAATGTATTACTTTTACAATTGAGATAACTAAAAACTTTAAAAAGCAATAATATTACTTTCTTAGGTAAA----CATACACAAAAATATGACAACTTTTAACTTTGGTAATTTCCATAAACTCCCTGATAACATAATGGAATCTG--CC----TATAAAATAGTACT---TCGTAATAGTACCACAGT------TTGGGCCAATACAGCTAAAAA-----TGTGGTATAGCAG-TTTTACAGCTCAACTC---TATA
gi|3 : ctaTAGAGGTAGGTAATGCGAGAAAAAA-GTACCATGTTATACCACAATTTTTTAGTG---AGTACCACTGTA-------TGTACCATGGTATCTTTTGTCATTTCTTAAGGCCAAGATGTCTCTAAATATCAGATTTGC--CACTC--TTGTTTTGAGCAATTTCCCCATTCGTCCGCCATTATGATGACGT----TCAATGCAGGCGGTGGTATCA-C---GTGTTGATTTATTTTCAATGGTAATATAGACAC------CAAGTTAAA-----CTGATAATGCGGTTCATTTACAATTCAG--------AAACTTTAAAAAGCCAAAATATTACTTTATTAAGTAAACACTCGGTCACGGAAAT
gi|3 : catTTACTTTATTAA-----GTAAACACTC-GGTCAC-----GGAAATTG--CC---GTAAAAG-CGATACT---CCATAATTGCACCATGGT------ATGTACTGGCGCAACTAAAAA----CGGGAATATATTGG-CATTACCATGCAGCTC---TAtgccgtaaaagcgatactccataattgcaccatggtatgtactggcgcaactaaaaacgggaatatattggcattaccatgcagctctaatgatca
gi|4 : cattagaggtaggtaatgcgagaaaaaagtaccatgttataccacaattttttagtgagtaccactgtatgtaccatggtatcttttgtcatttcttaaggccaagatgtctctaaatatcagatttgccactcttgttttgagcaatttccccattcgtccgccattatgatgacgttcaatgcaggcggtggtatcacgtgttgatttattttcaatggtaatatagacaccaagttaaactgataatgcggttcatttacaattcagaaactttaaaaagccaaaataTGTTATTTCTTTAGATTGAAATGTCTCTAAATATCA-ATTTGC--CACAC--TTGT---GAACAATTT-CTAATTTGTTCGCCATTTTGATTATGC----TCGAGGTAGTTGATGGTATTA-C-TTGTGATGATTTATTTTCAATTATAATATAAATAC------CAAGTAAAACTGGTCTGAAAATGCG----TTCTACATTTATGACAATTAAAACCTTTAAAACCCCAAAATATCACTTTCTTAA-------------------------ATACCTTTCTACTTCTGT--TT---GTGAA--------------------AATTGCCCC---AAAAAAAACAGTACT---CCATAATAATACCACAGT------ATGAACCGGCGCAGCTAAAAA----CTGCAGTATATGGG-TTTTACTGCGCAGCTCAAATATAatgatca
gi|5 : gAAGATTTCTTCAAATATCAGATTTG----AC------------AACAATTT-CCCATTCATCTTCCATTTTGATTACGC----TCGATG---------GTATCG-CAT-GTGATGATTTAATTTCAACAATAACATAAACACTTCATACAAGTAAAACTGATCTGATAATGTGTTACTTTTACACTTAAGACAACTTAAAACATTAAAA-GCCACAACATTACTTTCTAAAG----------------GAAATG-GACACTTTTTCACTTCAGTAATTTCCATAAACACTC-GGTCAT-----GGGAATCA--AA---G-AAAAAATGGTACTAATCCTTAATAGTACCGCGGT------ATGTACCGGCACAACTAAAAA----CTGTGGTTTACTGG-TTTTAATGCACAGCTT---TAcaagcata
gi|6 : -T-GTGACAATTTATTTTCAATAGTAA----AACA-----------TAAAACTGGACTGATAATGCGTTACTTTTACAATTAAGACAACTAAACGTGTTAAAAGGCCGAAAAGTTAATTTCTTAAGTAAA----CAGACACAAAAAAA--ACACCTTTACACTTCAGTTATTTCCGTAAACACTT-GGT------------------CT-----------CAGCATT-----ATA---GTACCGCAGT------ATATACGAGCTCAACTTAAAA----CTGCTGTATACCAG-TTTTACCGTGCAGCTC---TAT
gi|7 : cccattcaatgttttaagAGAGGTGGGTACCAGGGGAAATAATGTAACGTGGTATATTGCAGTTCTTTAGTG---AGTATTGCGGTA-------TGTACCACAATATATTGTATACTTTCTTAAGG---ATCTGTCTCCAAATATCAGATATGC--C-C-CTTTTGTTGTGAACAATAT-CTCATTTGTCTGCCATTTTGATTACGC----TTGAC-TGGTC--TGATAgg
gi|7 : agcACTGGTCTGATAATACATTACTTTTACAAAAAAGATTACTAAATACTatacattacttttacaaaaaagattactaaatact
gi|8 : agcagaggtgggtaccaggggaaataatgtaacgtggtatattgcagttctttagtgagtattgcggtatgtaccacaatatattgtatactttcttaaggatctgtctccaaatatcagatatgccccttttgttgtgaacaatatctcatttgtctgccattttgattacgcttgGTG----GTACTGCGATAAAAAAAGTACACCATGGTATACCCTGTCATTTCTTAAGGCCAAGATGTTTCCAAAT-T---GTTT--------C--TTATTGTGAACAATTT-CCCATTCATCCGCCATTTTGATTATAC----TCAATGTAATCAATGGTAT-----------------AGTTTCAATAGTTACATAAATAC------CAAGTAAAACTTGTCTGATAATGC
gi|9 : ACAACTAAACACTTTAAAAAGCAGAAATATTGCTCTGTAAAGTAAA----CAGAAACAGAAATctc
gi|9 : GTAAACA-----GAAAC-----AGAAATTG--CT---GAAAAAAATTGTACT---CCATAATAGTACCACAATTATATAATGTATTGGTGCAGCTAAAAG----CCATGATGTACCAG-TTTTATCGCACAGTTC---tgctgaaaaaaattgtactccataatagtaccacaattatataatgtattggtgcagctaaaagccatgatgtaccagttttatcgcacagttctggcgcaca
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TTAAGACACTGCAAAGCTAAGAAAATGACAAGTTGATAGATACATTATAATAATT