lowQualScore : 222222 111 1 11 11 111 111 11 11 222222 1 111 1111 1111 111 11 11 33333333333333333333333333 22222222 111 111 1 111 2222222222 1 1 111 2222 1 111 1111111111 1111111111111111 111 1111 1111 4444444444 22222 1 11 1
lowQualScore : 333333 5 222 1 6 11 11 222 1 888 1 666 0 11 8 6 66 8 11 333333 2 22 8 1 2 2 6 3 99 4 6 77 111 1 1 4444 11 99999 4444 111 55 66 7 1 00 6 88888888888888888888888888 99 44444444 222 2 44 8888 2 99 111 6 6 6 0 5 1 1 8 444 7777777777 9 55 555 6 5 1 5 3 444 1 1 6 33 6 6 99 4 3 5 2 1 1 77 7777777 2 4444 5 2 1 777 8888888888 5 5 3 9999999999999999 3 000 4 5 3 5 1 4 0 4 3 0 1 0 7 0 2222 0 66666 5 77 33 6 99 2222 8 1 0000000000 88888 3 7 6 55 2
lowQualScore : ...... . ... . . .. .. ... . ... . ... . .. . . .. . .. ...... . .. . . . . . . .. . . .. ... . . .... .. ..... .... ... .. .. . . .. . .......................... .. ........ ... . .. .... . .. ... . . . . . . . . ... .......... . .. ... . . . . . ... . . . .. . . .. . . . . . . .. ....... . .... . . . ... .......... . . . ................ . ... . . . . . . . . . . . . . . .... . ..... . .. .. . .. .... . . .......... ..... . . . .. .
lowQualScore : 000000 0 444 4 0 00 00 444 4 555 8 000 8 00 0 6 00 0 00 000000 8 44 0 4 5 5 7 5 00 0 7 77 777 0 0 2222 33 33333 2222 777 88 55 3 7 33 7 55555555555555555555555555 22 22222222 555 5 77 5555 5 22 777 7 7 0 7 0 0 0 0 000 7777777777 0 77 222 0 4 4 0 2 000 0 0 4 22 7 3 22 3 0 7 1 7 7 44 9999999 4 3333 1 4 5 555 7777777777 7 7 6 6666666666666666 0 000 0 7 0 7 6 3 4 7 9 9 7 7 9 7 1111 1 33333 7 99 33 3 22 9999 8 8 2222222222 33333 3 0 7 00 7
consensus : TCTGGATCTG------GATAAGTACGTTGT--AGAGACC--TCT--CGGC--ATATGCACAACGGAAAGGAGGTCTGGGAAACGCTGA--TTAGTC-CCAATGAAAGACGGC-CGATTTA--AA--G---CCGTTAACTGTATCTGCGCACACAACACTATC-TTCCAGTTGGTTCCAGTCTATA-ATAGTTTTCGGAAAGNAAGAGT-TCTGG-AAT--GAGGCGCTTTTGCACT----GCACTAGT--T--TAAAGCAT----TTG---CTGTTATT--TAANGAATGTTTTTCAATAATGTT-NT-CTGANTTACAG-TCTANGAAT---TT--C-CTGGC--TTTAATT--------TGGCGTTTGCCGCGGACA-GGGGTT--AAGTAGT---CAAGACATTGCATAGCTGGCACCAGCCCCTCGACCACCTTATAGAAGAAGGATAACCTCC-GT---GCTTTCCTTCGG------TCTTGAAGGGGTGGTAACTGTAAGTCGTTCATCATATCGTGTGACGCTACCTGGGTCCCGT---GACTTGTAGTCTCCTGTGACGAAGCGGACNGCTCGGCGCTG-TACTTTTTCTAG--TGTNAAGATGTCCT-TTTGTNGGTAAGGGTCCCAGAC-GATG--GAACCGTATTCNAG----GGTCGATCTAACTAGCGAC-AGGTA--CG----CTATT-TTCCT-GCATGA----T--GGT-----GGGCAGTGCCT--NANGTTCCTTC-TGAGGAANCCA-ATGGTCGAGTTGGCTTTCTTGGAGATGTTGGT----GATGTGGGCGTTCCACT-T-NAGGTCTTCGGATA--TTGTNANTCCNAGGTATGGGTT-TTCT-G-AAACTTGTTGTAGTATANT-T-TTG-TCGATTTTGTAGAANTGTGA
Reference ( gi|3 ) : TCTGGATCTG------GATAAGTACGTTGT--AGAG-CC--TCT--CGGC--ATATGCACAACGGAAAGAAGGTCTGGGAAACACTGA--TTAGTC-CCATTGAAAGACGGC-CGATTTA--AA--G---CCGTTGACTATATTTGCGCACACAACACTATC-TTCCAGTTGGTTCCAGTCTATA-ATAGTTTTTAAAAAGTAAGAGT-TCTGG-AAT--AAGATGCTTTTGCACT----GCACTAAT--T--TAAAGCAT----TTG---CTGTTATT--TAAAGAATGTTTTTCAATAATATT-GT-CTGATTTGCAG-CCTAGGAAT---TT--C-CTGGC--TTTAATT--------TGGCGCTTGCCGCGGACA-GGGGTT--AAATAGT---CAAGACATTGCATAGCTGGCACCAGTCCCTCGACCACCTTATAGAAAAAGGATAACCTCT-GT---GCTTTCCTACGG------TCTTGGAGGGGTGGTAATTGTAAGTCGTTCATCATA-CGTGTGACGCTACCTGGGTCCCGT---GACTTGTAGTCTCCTGTGATGAAGCGGACGGCTTGGCGCTG-TACTTTCTCTAG--TGTAAAGATGTCCT-TTTGTTGGTAAGGATCCCAGAC-GATG--GAACAGTATTCTAG----GGTTGATCTTACTAGTGAC-AGGTA--TG----CCATT-TTTCT-GCATGA----T--GGT-----GGACAGTGTTT--TAGGTTCCTTC-TAAGGAAGCCA-ATGGTCGAGTTTGCTTTTTTGGAGATCTTGGT----GATGTGAGCGCTCCACT-T-AAGGTCTTCGGATA--TTGTCACTCCAAGATATGGGTT-TACT-G-GTACTTGTTGTAGTATAGT-T-TTG-TCTAGTTCATAGAAATGTGA
gi|9 : TCTGAATCTG------GATAAGTACGTTGTGTAGAG-CC--TCT--CGGC--ATATGCACAACGGAAAGAAGGTCTGGGAAACACTGA--TTAGTC-CCAATGAAAGACGGC-CGATTTA--AA--G---CCGTTGACTGTATTTGCGCACACAACACTATC-TTCCAGTTGGTTCCAGTCTATA-ATAG-TTTTGGAAAGTAAGAAT-TCTGG-AAT--GAGATGCTTTTGCACT----GCACTAAT--T--TAAAGCAT----TTG---CCGTTATT--TAAAGAATGTTTTTCAATAATATT-GT-CTGATTTGCAG-CCTAAGAAT---TT--C-CTGGC--TTTAATT--------TGGCGCTTGCCGCAGACAGGGGGTT--AAATAGT---CAAGACATTGCATAGCTGGCACCAGCCCCTCGACCACTTTATAGAAAAA
gi|8 : ggaTCTGGATCTGGATCATGATAAGTACGTTGT--AGAG-CC--TCT--CGGC--ATATGCACAACGGAAAAGAGGGCTGGGAAACACTGT--TTAATC-CCAATGAATGACGGC-CGATTTC--AA--G---CCGTTAACTGTATCTGCGCACACAACACTATC-TTCTAGTTGGTTCCAGTCTATA-ATAGTTTTTGGAAAGTAAGAGT-TCTGA-AAT--AAGGCACTTTTGCAGT----GCACTAGT--T--CGAAACAT----TTG---CTGTTATT--TAATGAATGTCT----ATAA-ATT-TT-CTG------------------------------GC--TTTAATT--------TGGCATTTGCCGCGGACA-GGGGTT--AAATAGT---CAAGACATTGCATAGCTGGCACCAGCCCCCCGACCACCTTATAGAAGAAGGATAA---CT-GT---GCTTTCCTTTGG------TCTTGAAGGGGTGGTCATTGTAAGTCGTTCAT
gi|1 : aTCTGAATCTT------AATAA-TACGTCGT--AGTGACCGATAC--TGGC--TTTTACACGACGG-----------GGGAG----TGAGCTTAATCGCTCTTGGAC-ACTGC-TGATTTG--AAT-GATTCTATTGACT----TTGAGTTAACTATACTGTCACTGC-GTTTATTCAAGTC-GTACACAGATCTGACAAAATATGAATATCTG----------ATG--TTTCCACTTTTTGTACTGATAGTCATAAAGCAC----TTG---CTGTTGTTA-CAAATAGAGTTCTCCA-CAATGTTTGT-TTGAAC-GTAG-TTTAAACAT---TG--T-TTAGC--CCTGATTGTTCTCTTTGG---TTTCTGTGT-C------TT--TAGTGTT---CAA--TATTG-ATGGCTGGTACGTGCCCTTCCACTATCTTATACAAGAA------CATCA-GT---TGTTGTTGACGGCGTCTCTCCTGCAGGGGTTGTAACTG-GAG--------CATGTCG-ATGACGCATCCT---TCCTGTTGGGACCTGTAATCGCCTGTGATGAATCTGGCAGCAGATCTCTG-GATTCTCTCCAGACGGTCAA--TGTCAT-CCTTCTGGTAAGGGTGCCAGAC-GATG--CTTCCGTACTCAAGTTTGGGGCGA----ACGAGGGCCTAGGTG--CG----CGTTC-TTCCT-GAATGA----T--TTT-----GGGCAGTGCCT--GAGGTTTCTTCGTAAGAATCCTA-ATG-TTGAGTTGGCACGTTTGCAGGTGTTGTT----TATGTGGATTTTCCATT-T-GAGGTCTTCTGATT--GTATTATGCCGAGCTATGGGCT---CTAG-AAACTTGCTTTAGTATATG-G-TTG-TCGATATTGTAGAAGTG
gi|6 : tTCTGGATCTT------GATTAGTACGTTGA--AGTGACC--ACTGCTGGC--TTTAACCCAATGG---GAAGG-------AATGCGCA--TTAGTC-CAATTgcttgttttgtttctggtactgagagagtagcatttcctggagttaaatttcattccctattctttggcccagagtttaggttgtcgagatctttctgtagttagaatggtcgtttatggagttgatggcgcgatataacaggcagtcgtcggcaaaaaggcggatctgtgactttacccggtctgggtggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcaacctgacgggatctctcaccttccactatgacactcatctttcgttgcttgagaaagtt
gi|17 : TCTGGCTCTG------GATAATTACGTTGA--AGAA-CC--TCT--CGTCATATATGCACAGCGGAttgttagtagtgacttcaaacactcgatggagtcagcttccactaaattgtcactaagtttgttcccatctatggcagttttcacaaagaatgtgttcttgtaattcaatgtgtttgtgaatattggtttaaagcacttggtgctgttattgttcaaactgttttccacaatatttttctgaataaagtccttgtactgctttgccctgacagttcattttggtcttagtggttttagatagtggtcaatgttgatggccggtacgtgccctttcaccaccttgtacagcaacgttagcctctggtggagttgtctttcctgtagtggtggtagctctaggtccctcaggatgtcggaggcacttcctgcttccagggatctgtagtcttttgttatgaagtg
gi|7 : aACAATGGAAAGGAGGTATGGGAAACATTGA--TTAGTC-CCAATGAAAGACGGC-CATTTTA--AA--G---CCGTTAACTGCATCTGCGCATACAACACTATC-CTTCAGTTGGCAAAAGTCTATA-ATAGTTTTTGGAAAGAAATAGT-TCTGG-AAT--GAGGCACTTTTGTACT----GCACTAGT--T--TAAAGCAT----TTG---CTGTTATT--TATTGAACGTTTTTCAATAACGTT-AT-CTGACTTACAT-TCTATGAAT---TT--G-CTGGC--TTTAATT--------TGGCGTTTGTCTAGGATA-AGGGTT--AAGTAGT---CAAGACACTGCATAGCTGGCACCAGCACCTCGATCACCTTATAGAAGAAGGATAACCTCT-GT---GCTTTCCTTTGG------TCTTGAATGGGTGGTAACT-------GTTCATCATA-CGTGTGACGATACATGGGTACCGT----ACT
gi|2 : TGAAACTCGACACGGTTCAGTAACTG---TCATTAACTGTATCTGTGCCTACAACACTATT-TTTCAGT----------CTATA-ATAGTTTTTCAGAAGAAAGAGT-TCTGG-AAT--GAGGCACTTTTGCACT----GCACTTGT--T--TAAAGCATACATTTG---CTGTTATT--TTATGGATGTTTTTCAATAATGTT-AT-CTGATTTACAG-TCTATGAAT---TT--TTCTGAC--TTTGATT--------TGGCTTTTGTCATGGATA-GCGGTT--AAGAAGT---CAAGACATTGCACAGCTGGCACCAGCCTCTAGACCACCTTATAGAA---GGATAACCACC-AA---GCTTTCCTTCTG------TCTTGAAGGGGTGATAATTGTAGGTTGTTTATCATA-CGGGTAACTCTACTTGGGTATGTT---GTTTTGTAGTCTCCTGTGATGAAGTGGACAGCTTGACACTG-TATTTTTTCAAA--TAAGACAATGTCCT-TTTGTAGATAAGGATCCCAGAT-GATA--AAACAGTATTCTAG----GGTTGAGCTAACTAGCA---AGGTA--CA----CTATT-TTCCA-GCATGA----T--GGT-----GGGCAGTGTTT--TTAGTTCTTTC-TAAGGAAGCCA-AAGGTCGAGTTTGCTTTCTTGGAGATATTAGT----GATGTTGGCGCTCCACT-T-AAGGTCTTCAGATA--TTGTCTCTCCCAGATAGGGGTT-TTCT-GAAAACTTGTTGTAGTATGGT-T-TTG-TTGAGTTTGTAGAATTGTGAgttttttg
gi|6 : AGTTTGTTCCCATCTATG-GCAGTTTTCACAAAGAATGTGT-TCTTGTAATTCAATGTGTTTGTGAAT-------ATTGGT--T--TAAAGCAC----TTGGTGCTGTTATTGTTCAA-ACTGTTTTCCA-CAATATT-TTTCTGAAT-AAAGTCCTTGTACTGCTTTGCC-CTGACAGTTCATTT--------TGGT-CTT---------A-GTGGTTTTAGATAGTGGTCAA--TGTTG-ATGGCCGGTACGTGCCCTTTCACCACCTTGTACAGCAACGTTAGCCTCTGGTGGAGTTGTCTT----------TCCTGTAGTGGTGGTAGCTCTAGGTCCCTCAGGATGTCG-GAGGCACTTCCTGCTTCCAGG---GATCTGTAGTCTTTTGTTATGAAGTGtgatttgctgttcatgctgattaaatttaaaacgcaaaccccatgtattagcccatttctcttgttcttgcaagtcctgttggagggcgatgtggtcttctgtgcttttggcgactccatgaagtagacaatc
gi|11 : tctggatcttgattagtacgttgaagtgaccactgctggctttaacccaatgggaaggaatgcgcattagtccaattttgttagtagtgacttcaaacactcgatggagtcagcttccactaaattgtcactaTTTCCTTCGG------TCTTGAAGGGGTGGTAATTGTAAATCATTCATCATA-CATGTGACGCTACCTTGGTCCCGT---GACTTGTAGTCTCTTGTGACGAAGCGGACGGCTTGGCGCTG-TACTTTCTCTAG--TGTAAAGATGTCCT-TTTGTTAGTAAGGATCCCAGAC-GATG--GAACAGTATTATAG----GGTTGCTATAACTTGTGAC-AGGTA--TG----CCATT-TTCCT-GCAAGA----T--GG
gi|4 : TGTAATCATTTTTTATGTACCCGATTGATCGGTGTTGGTTCCTT-TCTAG--TTTGTCTATATCCC-TTTAATG-TATGGGTTCCAGA----TG--GCGCCATATTCCAT----CACTGATCTAACTAGGGAT-ATATAAATGTAACCTGTT-TTTCG-GCATGG----TTCGG------GGAC---GTTCCGTAAATTTCTCC-CGAGAAAGCCT-AGTGTTGTATTGGATTTGCTGCATATGTTGTTTATAAATATGTATATTGCATT-TTCAGGTTGTTGAAAAATTTGG-AGTCCTATATATGGGTT-GTCT-T-GGACCTGTTGTAGTATAATATGTTGTTCTATTTGGTAGAACTTTGA
gi|13 : cCTGTAACCAAGCGTGCTCCACGGCGCTG-AACTTTTTCTAG--TGCTGAGATGTCCTGTTTGTAGG-AGAGATTCCAGACAGATGATGAA---TATTCGAGATGTGGTCGGACTTAtgattgtttgttaattgattatgttgcatatttttgtgttaaatctcataccccatttattagcccagttttcatctgcttgtagtatatggtgttctttctcctttttaatgattctgtaaagtaagcagtcgtctgtaaataggcagacagctgatttgacgctgtcaggaagataattcatatggcaaaggaacataattggtcttaatacagtgccttggggaactccagagtccacactggttccaactgattgtt
gi|12 : CTG-TACCTTTTCTAG--TATAAAGATGCCCT-TTTGTTGATAAGGATCCCAGAC-AATA--GAACAGTACCCTAG----GGTTGATCTGGCTTGTGAA-AGGTA--CG----TTATT-TTCCT-GCATGA----T--TGTGGACAGGACAGTGTTT--CAAGTTTCTTC-TAAGGAAACCA-ATGGTCGAGTTTGCTTTTTTGGAGATCTTGGT----GACGTGGGCGCTCCACT-T-AAGGTATTCAGATT--TTGCC
gi|10 : GATGTCAC-TTTACAGGTAAGGGTGTCAGAT-GGTG--CATCCATATTCCAG----CTTGGATCTGATGAGTGCT-ATGTA--GG----C-ATTCTTTTT-ACA-GACCTTT--AGT--------CATTGCCT--GAGGTTTTGTC-GGAGGAATCCTTATG-TAGAGTTGGCTCATTTGACTATGTTGTT----GATGTGAGTTTTCCACT-T-CAGGTCATCTGATA--TAGTGATTCCCAGGTATGGGTTATCCT-G-A-ATTTGTT
gi|5 : gatctctggacacgttctaacttgtcCATT-CATCTTGCAAGC----T--GTT-----TGGTAGTGCCT--TATGCTCCTCC-TGAGAAACCCA-AGCGTTGAGATGGCCGTCTATGTCATGTTGGT----GA--TAATCTTTTTAATGT-GATGTTGTCAGAAA--ATGTGAAACCAGAGTATGGGTT-TGCT-T-GTACCTGTtaaggatcacatcattgatagtgcat
gi|14 : ataatgctagcgtattcaaatgtggaccgaatgagcgttatgtacaCATAA----T--GGT-----TGGCAATGTCG--CATGA-CCTTC-TAAGAAAGTCA-ATGGTCAAGTTTGC-TTCTTGAAGATCTTGGT----GATATGGTCGTTTCACT-T-AAGGTATTctggggatctgatcgtcgatggtattgaaattgctgccctgatttctggtgatattaaaggtaatacttttttaatagaattttatttcccaattgttcgcccattgttgaatatcaacttggagaatttggtattcacgaaactatttgatatggtattgaaaaggcagtcatttgcaaagagaggtgtctgcgacttagtcttatctggtaggttgttaatgtgccacaagaacaataggggaccgagaatgctaccttgggatactccaaatacaacatctacttggcggaacttcgcaccttccgctattaccgtacatttcccaatgtgtcaggaagttg
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|15 ): AGTTGACACAGTCAGGGAGGTCGTTTATGTGGCATAGGGACATAATTGATCTTAATACAGTGTCTTAAGGTACTCCAAAGTCCACCATGGTTCAATTTGATTGTT
Unaligned ( gi|16 ): CCCAAGTATTGAGTTGGCACTCTTTGTTATGTTAGTGATGTGGTTTTCCATGTGAGTTGTCAGAAAATGTGATATCAAGGATGGATTGTCTTGTACCTGCTT
Alignments
lowQualScore : 111111 1 222222222 111 111 1111 111 1111 111 1111 1111 22222222 111111 11 11111111111 2 1 111 11 11111 22222222 1 111111 11111 111 1
lowQualScore : 999999 2 99 5 99 99 99 6 6 666666666 77 2 000 77 1 5 5 77 77 0 1 0 0 0 0 5 0 222 1 5 5 77 5 5 0 5 2222 000 0000 6 000 5 00 8888 3 99 2222 3 4444 77 00000000 3 0 1 1 5 0 222222 4 4 6 11 99 66666666666 0 22 1 3 1 2 1 111 0 1 2 1 33 4444 5 11 0 55 66 3 1 00000 7 4 55555555 0 0 5 5 2 9999 66 555555 1 1 1 1 555 55 1 2 1 0 9999 4 3 2 4 4 1 22 4 0 777 1 22 1 0 666 99999 1 777 0 2 3 0 1
lowQualScore : ...... . .. . .. .. .. . . ......... .. . ... .. . . . .. .. . . . . . . . . ... . . . .. . . . . .... ... .... . ... . .. .... . .. .... . .... .. ........ . . . . . . ...... . . . .. .. ........... . .. . . . . . ... . . . . .. .... . .. . .. .. . . ..... . . ........ . . . . . .... .. ...... . . . . ... .. . . . . .... . . . . . . .. . . ... . .. . . ... ..... . ... . . . . .
lowQualScore : 222222 5 22 5 22 22 22 7 7 777777777 33 5 000 99 7 7 7 99 99 7 3 3 4 7 7 7 1 000 0 7 7 99 7 7 7 7 1111 000 1111 6 000 0 66 9999 0 33 1111 0 0000 99 77777777 0 7 7 4 7 7 666666 3 3 7 55 22 77777777777 3 11 4 7 3 5 0 777 7 0 2 6 88 6666 0 99 2 22 99 9 0 66666 2 2 00000000 2 0 0 0 2 4444 11 000000 0 0 1 0 777 88 1 0 1 1 4444 4 9 9 4 4 0 88 2 8 444 0 99 0 4 000 55555 0 000 0 5 0 8 0
consensus : TCTGGATCTGGAT------AAGTACGTTGT--AGAGACC--TCT--CGGC--ATATGCACAACGGAA-AG-GAG-------G-TCTGGGAAAC-GCTGATTAGTCCCAAT---GAAAGA--CGGC-CGA-TTTA--AA--GCCGTTGACTGTATCTGCGCACACAACACTATCTTCCAGTTGGTTCCAGTC-TATAATAGTTTTTGGAAAGNAAGAGT-TCTGG-AAT--GAGGC-GCTTTT-GCACTGCACTAGTT-TAAAGCAT----TTG---CTGTTATT---TAACGAAT---GTTTTTCAATAATGTTN-T-CTGANTTGCAGTC----TANGAATTT--C-CTGGC--TTTAATT--------TGGCGTTTGCCGCGGACA-GGGGTT----A-AGTAGTCAAGACATTGCATAGCTGGCACCAGCCCCTCGACCACCTTATAGAAGAAGGATAACCTCT-GTG--CTTTCCTT--CGG------TCTTGAAGGGGTGGTAACTGTAAGTCGTTCATCATA-CGTGTGACGCTACCTGGGTCCCGT---GACTTGTAGTCTCCTGTGACGAAGCGGACGGCTCGGCGCTGTACTTTTTCTAG--TGTNAAGATGTCCT-TTTGTNGGTAAGGATCCCAGAC-GATG--GAACCGTATTCNAG----GGTTGATCTAACTAGCGAC------AGGTACGCTATT-T-TCCTGCATGA----T--GGT-----GGGCAGTGCCTTAGGTTCCTTCTGAGGAAGCC-A-ATGGTCGAGTTGGCTTTCTTGGAGATGTTGGT----GATG-TGGGCGTTCCA-CT-TGAGGTCTTCGGATA--TTGTGANTCCNAGGTATGGGTT-TTCT-G-GNACTTGTTGTAGTATAGT-T-TTG-TCGANTTCGTAGAANTGTGA
Reference ( family-619 ) : TCTGGATCTGGAT------AAGTACGTTGT--AGAGACC--TCT--CGGC--ATATGCACAACGGAA-AG-GAG-------G-TCTGGGAAAC-GCTGATTAGTCCCAAT---GAAAGA--CGGC-CGA-TTTA--AA--GCCGTTAACTGTATCTGCGCACACAACACTATCTTCCAGTTGGTTCCAGTC-TATAATAGTTTTCGGAAAGNAAGAGT-TCTGG-AAT--GAGGC-GCTTTT-GCACTGCACTAGTT-TAAAGCAT----TTG---CTGTTATT---TAANGAAT---GTTTTTCAATAATGTTN-T-CTGANTTACAGTC----TANGAATTT--C-CTGGC--TTTAATT--------TGGCGTTTGCCGCGGACA-GGGGTT----A-AGTAGTCAAGACATTGCATAGCTGGCACCAGCCCCTCGACCACCTTATAGAAGAAGGATAACCTCC-GTG--CTTTCCTT--CGG------TCTTGAAGGGGTGGTAACTGTAAGTCGTTCATCATATCGTGTGACGCTACCTGGGTCCCGT---GACTTGTAGTCTCCTGTGACGAAGCGGACNGCTCGGCGCTGTACTTTTTCTAG--TGTNAAGATGTCCT-TTTGTNGGTAAGGGTCCCAGAC-GATG--GAACCGTATTCNAG----GGTCGATCTAACTAGCGAC------AGGTACGCTATT-T-TCCTGCATGA----T--GGT-----GGGCAGTGCCTNANGTTCCTTCTGAGGAANCC-A-ATGGTCGAGTTGGCTTTCTTGGAGATGTTGGT----GATG-TGGGCGTTCCA-CT-TNAGGTCTTCGGATA--TTGTNANTCCNAGGTATGGGTT-TTCT-G-AAACTTGTTGTAGTATANT-T-TTG-TCGATTTTGTAGAANTGTGA
gi|1 : TCTGAATCTTAAT------AA-TACGTCGT--AGTGACCGATAC--TGGC--TTTTACACGACGGGGGAGTGAGCTTAATCGCTCTTGGACACTGCTGATT--------T---GAATGATTCTAT-TGACTTTG--A------GTTAACTATA-CTGT--------CACTGC------GTTTATTCAAGTCGTACA-CAGATCTGACAAAATATGAATATCTG---AT--GTTTCCACTTTTTGTACTG-A-TAGTCATAAAGCAC----TTG---CTGTTGTT-----ACAAATAGAGTTCTCCA-CAATGTTTGT-TTGAAC-GTAGTT----TAAACATTG--T-TTAGC--CCTGATTGTTCTCTTTGG--TTT-CTGTGT-C------TT----T-AGTGTTCAA--TATTG-ATGGCTGGTACGTGCCCTTCCACTATCTTATACAAGAA------CATCA-GT----TGTTGTTGACGGCGTCTCTCCTGCAGGGGTTGTAACTG-GAG--------CATGTCG-ATGACGCATCCT---TCCTGTTGGGACCTGTAATCGCCTGTGATGAATCTGGCAGCAGATCTCTGGATTCTCTCCAGACGGTCAA--TGTCAT-CCTTCTGGTAAGGGTGCCAGAC-GATG--CTTCCGTACTCAAG----TTTGGGGCGAACGAGGGCCT-----AGGTGCGCGTTC-T-TCCTGAATGA----T--TTT-----GGGCAGTGCCTGAGGTTTCTTCGTAAGAATCCTA-AT-GTTGAGTTGGCACGTTTGCAGGTGTTGTT----TATG-TGGATTTTCCA-TT-TGAGGTCTTCTGATT--GTATTATGCCGAGCTATGGG---CTCTAG-AAACTTGCTTTAGTATATG-G-TTG-TCGATATTGTAGAAGTG
gi|10 : tTTCTAACTTGTC--GATGTCAC-TTTACAGGTAAGGGTGTCAGAT-GGTG--CATCCATATTCCAG----CTTGGATCTGATGAGTGCT------ATGTAGGC-ATTCT-TTTTACA-GACCTTT--AGT--------CATTGCCTGAGGTTTTGTCGGAGGAATCC-TTATG-TAGAGTTGGCTCATTTGACTATGTTGTT----GATG-TGAGTTTTCCA-CT-TCAGGTCATCTGATA--TAGTGATTCCCAGGTATGGGTTATCCT-G--AATTTGTTgcttgttttgtttctggtactgagagagtagcatttcctggagttaaatttcattccctattctttggcccagagtttaggttgtcgagatctttctgtagttagaatggtcgtttatggagttgatggcgcgatataacaggcagtcgtcggcaaaaaggcggatctgtgactttacccggtctgggtggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcaacctgacgggatctctcaccttccactatgacactcatctttcgttgcttgagaaagtt
gi|11 : gatctctggacacgTTTCCTT--CGG------TCTTGAAGGGGTGGTAATTGTAAATCATTCATCATA-CATGTGACGCTACCTTGGTCCCGT---GACTTGTAGTCTCTTGTGACGAAGCGGACGGCTTGGCGCTGTACTTTCTCTAG--TGTAAAGATGTCCT-TTTGTTAGTAAGGATCCCAGAC-GATG--GAACAGTATTATAG----GGTTGCTATAACTTGTGAC------AGGTATGCCATT-T-TCCTGCAAGA----T--GGtaaggatcacatcattgatagtgcat
gi|12 : CTGTACCTTTTCTAG--TATAAAGATGCCCT-TTTGTTGATAAGGATCCCAGAC-AATA--GAACAGTACCCTAG----GGTTGATCTGGCTTGTGAA------AGGTACGTTATT-T-TCCTGCATGA----T--TGTGGACAGGACAGTGTTTCAAGTTTCTTCTAAGGAAACC-A-ATGGTCGAGTTTGCTTTTTTGGAGATCTTGGT----GACG-TGGGCGCTCCA-CT-TAAGGTATTCAGATT--TTG
gi|13 : CTGTAACCAAGCGTGCTCCACGGCGCTGAACTTTTTCTAG--TGCTGAGATGTCCTGTTTGTAGG-AGAGATTCCAGACAGATGATGAA---TATTCGAGATGTGGTCGcc
gi|14 : CATAA----T--GGT-----TGGCAATGTCGCATGA-CCTTCTAAGAAAGTC-A-ATGGTCAAGTTTGCTT-CTTGAAGATCTTGGT----GATA-TGGTCGTTTCA-CT-TAAGGTATTgactta
gi|16 : gattCC-A-AGTATTGAGTTGGCACTCTTTGTTATGTTAGT----GATG-T-GGTTTTCCA-TG-TGA-GTTGTCAGAAA--ATGTGATATCAAGG-ATGGATT-GTCT-gatg
gi|17 : cTCTGGCTCTGGAT------AATTACGTTGA--AGA-ACC--TCT--CGTCATATATGCACAGCGGAtgtacctgctt
gi|2 : aT---GAAACT--CGACACGG-TTCAGTAACTGTCATTAACTGTATCTGTGCCTACAACACTATTTTTCAGT----------C-TATAATAGTTTTTCAGAAGAAAGAGT-TCTGG-AAT--GAGGC-ACTTTT-GCACTGCACTTGTT-TAAAGCATACATTTG---CTGTTATT---TTATGGAT---GTTTTTCAATAATGTTA-T-CTGATTTACAGTC----TATGAATTT--TTCTGAC--TTTGATT--------TGGCTTTTGTCATGGATA-GCGGTT----A-AGAAGTCAAGACATTGCACAGCTGGCACCAGCCTCTAGACCACCTTATAGAAG---GATAACCACC-AAG--CTTTCCTT--CTG------TCTTGAAGGGGTGATAATTGTAGGTTGTTTATCATA-CGGGTAACTCTACTTGGGTATGTT---GTTTTGTAGTCTCCTGTGATGAAGTGGACAGCTTGACACTGTATTTTTTCAAA--TAAGACAATGTCCT-TTTGTAGATAAGGATCCCAGAT-GATA--AAACAGTATTCTAG----GGTTGAGCTAACTAGCAA--------GGTACACTATT-T-TCCAGCATGA----T--GGT-----GGGCAGTGTTTTTAGTTCTTTCTAAGGAAGCC-A-AAGGTCGAGTTTGCTTTCTTGGAGATATTAGT----GATG-TTGGCGCTCCA-CT-TAAGGTCTTCAGATA--TTGTCTCTCCCAGATAGGGGTT-TTCT-GAAAACTTGTTGTAGTATGGT-T-TTG-TTGAGTTTGTAGAATTGTGA
gi|3 : TCTGGATCTGGAT------AAGTACGTTGT--AGAG-CC--TCT--CGGC--ATATGCACAACGGAA-AG-AAG-------G-TCTGGGAAAC-ACTGATTAGTCCCATT---GAAAGA--CGGC-CGA-TTTA--AA--GCCGTTGACTATATTTGCGCACACAACACTATCTTCCAGTTGGTTCCAGTC-TATAATAGTTTTTAAAAAGTAAGAGT-TCTGG-AAT--AAGAT-GCTTTT-GCACTGCACTAATT-TAAAGCAT----TTG---CTGTTATT---TAAAGAAT---GTTTTTCAATAATATTG-T-CTGATTTGCAGCC----TAGGAATTT--C-CTGGC--TTTAATT--------TGGCGCTTGCCGCGGACA-GGGGTT----A-AATAGTCAAGACATTGCATAGCTGGCACCAGTCCCTCGACCACCTTATAGAAAAAGGATAACCTCT-GTG--CTTTCCTA--CGG------TCTTGGAGGGGTGGTAATTGTAAGTCGTTCATCATA-CGTGTGACGCTACCTGGGTCCCGT---GACTTGTAGTCTCCTGTGATGAAGCGGACGGCTTGGCGCTGTACTTTCTCTAG--TGTAAAGATGTCCT-TTTGTTGGTAAGGATCCCAGAC-GATG--GAACAGTATTCTAG----GGTTGATCTTACTAGTGAC------AGGTATGCCATT-T-TTCTGCATGA----T--GGT-----GGACAGTGTTTTAGGTTCCTTCTAAGGAAGCC-A-ATGGTCGAGTTTGCTTTTTTGGAGATCTTGGT----GATG-TGAGCGCTCCA-CT-TAAGGTCTTCGGATA--TTGTCACTCCAAGATATGGGTT-TACT-G-GTACTTGTTGTAGTATAGT-T-TTG-TCTAGTTCATAGAAATGTGAtgatttgctgttcatgctgattaaatttaaaacgcaaaccccatgtattagcccatttctcttgttcttgcaagtcctgttggagggcgatgtggtcttctgtgcttttggcgactccatgaagtagacaatc
gi|4 : GATTGATCGGTGTTGGTTCCTTTCTAG--TTTGTCTATATCCC-TTTA-ATGTATGGGTTCCAGA----TG--GCGCCATATTCCAT----CACTGATCTAACTAGGGATATATAAATGTAACCTGTT-T-TTCGGCATGG----TTCGG------GGAC-GTTCCGTAAATTTCTCCCGAGAAAGCC-T-AGTGTTGTATTGGATTTGCTGCATATGTTGTTTATAAATA-TGTATATTGCATTT-TCAGGTTGTTGAAAAATTTG-GAGTCCTATATATGGGTT-GTCT-T-GGACCTGTTGTAGTATAATATGTTGTTCTATTTGGTAGAACTTTGA
gi|5 : ctgtaatcattttttatgtacccCGTATTCAAA----TGTGGACCGAATGAGCGTT------ATGTACAC-ATT-CATCTTGCAAGC----T--GTT-----TGGTAGTGCCTTATGCTCCTCCTGAGAAACCC-A-AGCGTTGAGATGGCCGTCTATGTCATGTTGGT----GATAAT---CTTTTTA-ATGTGATGTTGTCAGAAA--ATGTGAAACCAGAGTATGGGTT-TGCT-T-GTACCTGTtgattgtttgttaattgattatgttgcatatttttgtgttaaatctcataccccatttattagcccagttttcatctgcttgtagtatatggtgttctttctcctttttaatgattctgtaaagtaagcagtcgtctgtaaataggcagacagctgatttgacgctgtcaggaagataattcatatggcaaaggaacataattggtcttaatacagtgccttggggaactccagagtccacactggttccaactgattgtt
gi|6 : ataatgctagTCTGGATCTTGAT------TAGTACGTTGA--AGTGACC--ACTGCTGGC--TTTAACCCAATGGGA-AG-GAA-----------TG-----C-GC--ATTAGTCC-AATTTTGTTAGT--AG---TGA-CTTC--AA--ACACTCGATGGAGTCAGCTTCCACTAAATTGTCACTAAGTTTGTTCCCATC-TATGGCAGTTTTCACAAAGAATGTGT-TCTTGTAATTCAATGT-GTTTGT-GAAT---ATTGGTT-TAAAGCAC----TTGGTGCTGTTATTGTTCAA--ACT---GTTTTCCA-CAATATTT-TTCTGAAT-AAAGTCCTTGTACTGCTTTGCC-CTGACAGTTCATTT--------TGGTCTT----------A-GTGGTTTTAGATAGTGGTCAA--TGTTG-ATGGCCGGTACGTGCCCTTTCACCACCTTGTACAGCAACGTTAGCCTCTGGTGGAGTTGTCTT-----------TCCTGTAGTGGTGGTAGCTCTAGGTCCCTCAGGATGTCG-GAGGCACTTCCTGCTTCCAGG---GATCTGTAGTCTTTTGTTATGAAGTGctggggatctgatcgtcgatggtattgaaattgctgccctgatttctggtgatattaaaggtaatacttttttaatagaattttatttcccaattgttcgcccattgttgaatatcaacttggagaatttggtattcacgaaactatttgatatggtattgaaaaggcagtcatttgcaaagagaggtgtctgcgacttagtcttatctggtaggttgttaatgtgccacaagaacaataggggaccgagaatgctaccttgggatactccaaatacaacatctacttggcggaacttcgcaccttccgctattaccgtacatttcccaatgtgtcaggaagttg
gi|7 : ACAATGGAA-AG-GAG-------G-TATGGGAAAC-ATTGATTAGTCCCAAT---GAAAGA--CGGC-CAT-TTTA--AA--GCCGTTAACTGCATCTGCGCATACAACACTATCCTTCAGTTGGCAAAAGTC-TATAATAGTTTTTGGAAAGAAATAGT-TCTGG-AAT--GAGGC-ACTTTT-GTACTGCACTAGTT-TAAAGCAT----TTG---CTGTTATT---TATTGAAC---GTTTTTCAATAACGTTA-T-CTGACTTACATTC----TATGAATTT--G-CTGGC--TTTAATT--------TGGCGTTTGTCTAGGATA-AGGGTT----A-AGTAGTCAAGACACTGCATAGCTGGCACCAGCACCTCGATCACCTTATAGAAGAAGGATAACCTCT-GTG--CTTTCCTT--TGG------TCTTGAATGGGTGGTAACT-------GTTCATCATA-CGTGTGACGATACATGGGTACCGT----ACT
gi|8 : TCTGGATCTGGATCATGATAAGTACGTTGT--AGAG-CC--TCT--CGGC--ATATGCACAACGGAA-AA-GAG-------G-GCTGGGAAAC-ACTGTTTAATCCCAAT---GAATGA--CGGC-CGA-TTTC--AA--GCCGTTAACTGTATCTGCGCACACAACACTATCTTCTAGTTGGTTCCAGTC-TATAATAGTTTTTGGAAAGTAAGAGT-TCTGA-AAT--AAGGC-ACTTTT-GCAGTGCACTAGTT-CGAAACAT----TTG---CTGTTATT---TAATGAAT---GTCT----ATAA------------------------------ATTT--T-CTGGC--TTTAATT--------TGGCATTTGCCGCGGACA-GGGGTT----A-AATAGTCAAGACATTGCATAGCTGGCACCAGCCCCCCGACCACCTTATAGAAGAAGGATAA---CT-GTG--CTTTCCTT--TGG------TCTTGAAGGGGTGGTCATTGTAAGTCGTTCATgttttttg
gi|9 : aTCTGAATCTGGAT------AAGTACGTTGTGTAGAG-CC--TCT--CGGC--ATATGCACAACGGAA-AG-AAG-------G-TCTGGGAAAC-ACTGATTAGTCCCAAT---GAAAGA--CGGC-CGA-TTTA--AA--GCCGTTGACTGTATTTGCGCACACAACACTATCTTCCAGTTGGTTCCAGTC-TATAATAGTTTT-GGAAAGTAAGAAT-TCTGG-AAT--GAGAT-GCTTTT-GCACTGCACTAATT-TAAAGCAT----TTG---CCGTTATT---TAAAGAAT---GTTTTTCAATAATATTG-T-CTGATTTGCAGCC----TAAGAATTT--C-CTGGC--TTTAATT--------TGGCGCTTGCCGCAGACAGGGGGTT----A-AATAGTCAAGACATTGCATAGCTGGCACCAGCCCCTCGACCACTTTATAGAAAAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AGTTGACACAGTCAGGGAGGTCGTTTATGTGGCATAGGGACATAATTGATCTTAATACAGTGTCTTAAGGTACTCCAAAGTCCACCATGGTTCAATTTGATTGTT
Alignments
lowQualScore : 111111 1 111 111 111 111111 11111111 111 1111 1111 22222222 111 11111111111 1 1 111 11 11111111111 1 111111 1111111 111 111 1
lowQualScore : 999999 2 99 5 99 99 99 222 1 111 0 3 2 000 5 77 555555 0 1 5 0 0 0 5 0 1 22 1 5 5 77 5 5 0 5 33333333 5555 5 000 1 666 88 8888 2222 3 4444 77 00000000 3 0 1 1 5 0 77 000 0 4 5 2 6 99 66666666666 0 22 1 3 1 2 1 111 0 1 2 1 33 4444 5 11 0 55 66 3 1 33 4 88888888888 0 0 5 5 2 9999 66 555555 0 2 1 1 555 55 1 2 1 0 9999 4 3 2 4 77 22 4 0000000 666 1 0 3 555 1 0 777 0 2 1 4 1
lowQualScore : ...... . .. . .. .. .. ... . ... . . . ... . .. ...... . . . . . . . . . .. . . . .. . . . . ........ .... . ... . ... .. .... .... . .... .. ........ . . . . . . .. ... . . . . . .. ........... . .. . . . . . ... . . . . .. .... . .. . .. .. . . .. . ........... . . . . . .... .. ...... . . . . ... .. . . . . .... . . . . .. .. . ....... ... . . . ... . . ... . . . . .
lowQualScore : 222222 5 22 5 22 22 22 222 0 777 7 5 5 000 7 99 999999 3 6 7 4 7 7 7 1 7 11 0 7 7 99 7 7 7 7 11111111 7777 7 000 4 333 77 4444 1111 0 0000 99 77777777 0 7 7 4 7 7 99 000 7 3 3 5 7 22 77777777777 3 11 4 3 3 5 0 777 7 4 2 6 88 6666 0 99 2 22 99 9 0 00 2 44444444444 2 0 0 0 2 4444 11 000000 8 2 1 4 777 88 1 0 1 1 4444 4 9 9 4 11 88 2 6666666 666 0 4 7 777 0 2 000 0 5 0 2 0
consensus : TCTGGATCTGGAT------AAGTACGTTGT--AGAGACC--TCT--CGGC--ATATGCACAACGGAAAGGAGGTCTGGG---AAACGCTGATTAGTCCCAAT---GAAAGACGGC-CGATTTA--AA--G---CCGTTGACTGTATCTGCGCACACAACACTATC-TTCCAGTTGGTTCCAGTC-TATAATAGTTTTTGGAAAGNAAGAGT-TCTGG-AAT--GAGGC-GCTTTT-GCACTGCACTAGTT-TAAAGCAT----T---TGCTGTTATTTAACGAA-T---GTTTTTCAATAATG-TTN-TCTGANTTGCAGTC----TANGAATTT--C-CTGGC--TTTAATT--------TGGCGTTTGCCGCGGACA-GGGG--TTA---AGTAGTCAAGACATTGCATAGCTGGCACCAGCCCCTCGACCACCTTATAGAAGAAGGATAACCTCT-GTG--CTTTCCTT--CGG------TCTTGAAGGGGTGGTAACTGTAAGTCGTTCATCATA-CGTGTGACGCTACCTGGGTCCCGT---GACTTGTAGTCTCCTGTGACGAAGCGGACGGCTCGGCGCTGTACTTTTTCTAG--TGTNAAGATGTCCT-TTTGTNGGTAAGGATCCCAGAC-GATG--GAACCGTATTCNAGNGTTGATCTAACTAGCGAC-AG------GTACGCTATT-T-TCCTGCATGA----T--GGT-----GGGCAGTGCCTTAGGTTCCTTCTGAGGAAGCC-A-ATGGTCGAGTTGGCTTTCTTGGAGATGTTGGT----GATG-TGGGCGTTCCACT-TG-AGGTCTTCGGA---TA--TTGTGANTCCNAGGTATGGGTTNTCT-T-GNACCTGTTGTAGTATAGT-T-TTG-TCGANTTCGTAGAANTGTGA
Reference ( family-619 ) : TCTGGATCTGGAT------AAGTACGTTGT--AGAGACC--TCT--CGGC--ATATGCACAACGGAAAGGAGGTCTGGG---AAACGCTGATTAGTCCCAAT---GAAAGACGGC-CGATTTA--AA--G---CCGTTGACTGTATCTGCGCACACAACACTATC-TTCCAGTTGGTTCCAGTC-TATAATAGTTTTTGGAAAGNAAGAGT-TCTGG-AAT--GAGGC-GCTTTT-GCACTGCACTAGTT-TAAAGCAT----T---TGCTGTTATTTAACGAA-T---GTTTTTCAATAATG-TTN-TCTGANTTGCAGTC----TANGAATTT--C-CTGGC--TTTAATT--------TGGCGTTTGCCGCGGACA-GGGG--TTA---AGTAGTCAAGACATTGCATAGCTGGCACCAGCCCCTCGACCACCTTATAGAAGAAGGATAACCTCT-GTG--CTTTCCTT--CGG------TCTTGAAGGGGTGGTAACTGTAAGTCGTTCATCATA-CGTGTGACGCTACCTGGGTCCCGT---GACTTGTAGTCTCCTGTGACGAAGCGGACGGCTCGGCGCTGTACTTTTTCTAG--TGTNAAGATGTCCT-TTTGTNGGTAAGGATCCCAGAC-GATG--GAACCGTATTCNAGGGTTGATCTAACTAGCGAC-AG------GTACGCTATT-T-TCCTGCATGA----T--GGT-----GGGCAGTGCCTTAGGTTCCTTCTGAGGAAGCC-A-ATGGTCGAGTTGGCTTTCTTGGAGATGTTGGT----GATG-TGGGCGTTCCACT-TG-AGGTCTTCGGA---TA--TTGTGANTCCNAGGTATGGGTTTTCT-G-GNACTTGTTGTAGTATAGT-T-TTG-TCGANTTCGTAGAANTGTGA
gi|1 : TCTGAATCTTAAT------AA-TACGTCGT--AGTGACCGATAC--TGGC--TTTTACACGACGGG--GGAG---TGAGCTTAATCGCTC-TTGG-------------ACACTGC-TGATTTG--AAT-GATTCTATTGACT----TTGAGTTAACTATACTGTCACTGC-GTTTATTCAAGTCGTACA-CAGATCTGACAAAATATGAATATCTG---AT--GTTTCCACTTTTTGTACTG-A-TAGTCATAAAGCAC----T---TGCTGTTGTT--ACAAA-TAGAGTTCTCCA-CAATG-TTTGTTTGAAC-GTAGTT----TAAACATTG--T-TTAGC--CCTGATTGTTCTCTTTGG--TTT-CTGTGT-C--------TTT---AGTGTTCAA--TATTG-ATGGCTGGTACGTGCCCTTCCACTATCTTATACAAGAA------CATCA-GT----TGTTGTTGACGGCGTCTCTCCTGCAGGGGTTGTAACTG-GAG--------CATGTCG-ATGACGCATCCT---TCCTGTTGGGACCTGTAATCGCCTGTGATGAATCTGGCAGCAGATCTCTGGATTCTCTCCAGACGGTCAA--TGTCAT-CCTTCTGGTAAGGGTGCCAGAC-GATG--CTTCCGTACTCAAGTTTGGGGCGAACGAGGGCCTAG------GTGCGCGTTC-T-TCCTGAATGA----T--TTT-----GGGCAGTGCCTGAGGTTTCTTCGTAAGAATCCTA-AT-GTTGAGTTGGCACGTTTGCAGGTGTTGTT----TATG-TGGATTTTCCATT-TG-AGGTCTTCTGATTGTA--TTATG---CCGAGCTATGGG--CTCTAG-AAACTTGCTTTAGTATATG-G-TTG-TCGATATTGTAGAAGTG
gi|10 : tTTCTAACTTGTC--GATGTCAC-TTTACAGGTAAGGGTGTCAGAT-GGTG--CATCCATATTCCAGCTTGGATCTGATGAGTGCT-AT------GTAGGC-ATTCT-TTTTACA-GACCTTT--AGT--------CATTGCCTGAGGTTTTGTCGGAGGAATCC-TTATG-TAGAGTTGGCTCATTTGACTATGTTGTT----GATG-TGAGTTTTCCACT-TC-AGGTCATCTGA---TA--TAGTGATTCCCAGGTATGGGTTATCC-T-GAATTTGTTgcttgttttgtttctggtactgagagagtagcatttcctggagttaaatttcattccctattctttggcccagagtttaggttgtcgagatctttctgtagttagaatggtcgtttatggagttgatggcgcgatataacaggcagtcgtcggcaaaaaggcggatctgtgactttacccggtctgggtggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcaacctgacgggatctctcaccttccactatgacactcatctttcgttgcttgagaaagtt
gi|11 : gatctctggacacgTTTCCTT--CGG------TCTTGAAGGGGTGGTAATTGTAAATCATTCATCATA-CATGTGACGCTACCTTGGTCCCGT---GACTTGTAGTCTCTTGTGACGAAGCGGACGGCTTGGCGCTGTACTTTCTCTAG--TGTAAAGATGTCCT-TTTGTTAGTAAGGATCCCAGAC-GATG--GAACAGTATTATAGGGTTGCTATAACTTGTGAC-AG------GTATGCCATT-T-TCCTGCAAGA----T--GGtaaggatcacatcattgatagtgcat
gi|12 : CTGTACCTTTTCTAG--TATAAAGATGCCCT-TTTGTTGATAAGGATCCCAGAC-AATA--GAACAGTACCCTAGGGTTGATCTGGCTTGTGAA-AG------GTACGTTATT-T-TCCTGCATGA----T--TGTGGACAGGACAGTGTTTCAAGTTTCTTCTAAGGAAACC-A-ATGGTCGAGTTTGCTTTTTTGGAGATCTTGGT----GACG-TGGGCGCTCCACT-TA-AGGTATTCAGA---TT--TTG
gi|13 : CTGTAACCAAGCGTGCTCCACGGCGCTGAACTTTTTCTAG--TGCTGAGATGTCCTGTTTGTAGG-AGAGATTCCAGACAGATGATGAA---TATTCGAGATGTGGTCGGACTcc
gi|14 : CATAA----T--GGT-----TGGCAATGTCGCATGA-CCTTCTAAGAAAGTC-A-ATGGTCAAGTTTGCTT-CTTGAAGATCTTGGT----GATA-TGGTCGTTTCACT-TA-AGGTATTta
gi|16 : gattCC-A-AGTATTGAGTTGGCACTCTTTGTTATGTTAGT----GATG-T-GGTTTTCCATG-TG-A-GTTGTCAGA---AA--ATGTGATATCAAGG-ATGGATTGTCT-T-GTACCTGCTgatg
gi|17 : cTCTGGCTCTGGAT------AATTACGTTGA--AGA-ACC--TCT--CGTCATATATGCACAGCGGAt
gi|2 : aT---GAAACTCGACACGGTTCAGTAACTG---TCATTAACTGTATCTGTGCCTACAACACTATT-TTTCAGT----------C-TATAATAGTTTTTCAGAAGAAAGAGT-TCTGG-AAT--GAGGC-ACTTTT-GCACTGCACTTGTT-TAAAGCATACATT---TGCTGTTATTTTATGGA-T---GTTTTTCAATAATG-TTA-TCTGATTTACAGTC----TATGAATTT--TTCTGAC--TTTGATT--------TGGCTTTTGTCATGGATA-GCGG--TTA---AGAAGTCAAGACATTGCACAGCTGGCACCAGCCTCTAGACCACCTTATAGAA---GGATAACCACC-AAG--CTTTCCTT--CTG------TCTTGAAGGGGTGATAATTGTAGGTTGTTTATCATA-CGGGTAACTCTACTTGGGTATGTT---GTTTTGTAGTCTCCTGTGATGAAGTGGACAGCTTGACACTGTATTTTTTCAAA--TAAGACAATGTCCT-TTTGTAGATAAGGATCCCAGAT-GATA--AAACAGTATTCTAGGGTTGAGCTAACTAGCA---AG------GTACACTATT-T-TCCAGCATGA----T--GGT-----GGGCAGTGTTTTTAGTTCTTTCTAAGGAAGCC-A-AAGGTCGAGTTTGCTTTCTTGGAGATATTAGT----GATG-TTGGCGCTCCACT-TA-AGGTCTTCAGA---TA--TTGTCTCTCCCAGATAGGGGTTTTCT-GAAAACTTGTTGTAGTATGGT-T-TTG-TTGAGTTTGTAGAATTGTGA
gi|3 : TCTGGATCTGGAT------AAGTACGTTGT--AGAG-CC--TCT--CGGC--ATATGCACAACGGAAAGAAGGTCTGGG---AAACACTGATTAGTCCCATT---GAAAGACGGC-CGATTTA--AA--G---CCGTTGACTATATTTGCGCACACAACACTATC-TTCCAGTTGGTTCCAGTC-TATAATAGTTTTTAAAAAGTAAGAGT-TCTGG-AAT--AAGAT-GCTTTT-GCACTGCACTAATT-TAAAGCAT----T---TGCTGTTATTTAAAGAA-T---GTTTTTCAATAATA-TTG-TCTGATTTGCAGCC----TAGGAATTT--C-CTGGC--TTTAATT--------TGGCGCTTGCCGCGGACA-GGGG--TTA---AATAGTCAAGACATTGCATAGCTGGCACCAGTCCCTCGACCACCTTATAGAAAAAGGATAACCTCT-GTG--CTTTCCTA--CGG------TCTTGGAGGGGTGGTAATTGTAAGTCGTTCATCATA-CGTGTGACGCTACCTGGGTCCCGT---GACTTGTAGTCTCCTGTGATGAAGCGGACGGCTTGGCGCTGTACTTTCTCTAG--TGTAAAGATGTCCT-TTTGTTGGTAAGGATCCCAGAC-GATG--GAACAGTATTCTAGGGTTGATCTTACTAGTGAC-AG------GTATGCCATT-T-TTCTGCATGA----T--GGT-----GGACAGTGTTTTAGGTTCCTTCTAAGGAAGCC-A-ATGGTCGAGTTTGCTTTTTTGGAGATCTTGGT----GATG-TGAGCGCTCCACT-TA-AGGTCTTCGGA---TA--TTGTCACTCCAAGATATGGGTTTACT-G-GTACTTGTTGTAGTATAGT-T-TTG-TCTAGTTCATAGAAATGTGAtgatttgctgttcatgctgattaaatttaaaacgcaaaccccatgtattagcccatttctcttgttcttgcaagtcctgttggagggcgatgtggtcttctgtgcttttggcgactccatgaagtagacaatc
gi|4 : TCGGTGTTGGTTCCTTTCTAG--TTTGTCTATATCCC-TTTA-ATGTATGGGTTCCAGA----TG--GCGCCATATTCCATCACTGATCTAACTAGGGAT-ATATAAATGTAACCTGTT-T-TTCGGCATGG----TTCGG------GGAC-GTTCCGTAAATTTCTCCCGAGAAAGCC-T-AGTGTTGTATTGGATTTGCTGCATATGTTGTTTATAAATA-TGTATATTGCATT-TTCAGGTTGTTGAA---AAATTTG-GAGTCCTATATATGGGTTGTCT-T-GGACCTGTTGTAGTATAATATGTTGTTCTATTTGGTAGAACTTTGA
gi|5 : ctgtaatcattttttatgtacccgattgaCGTATTCAAATGTGGACCGAATGAGCGTT-AT------GTACAC-ATT-CATCTTGCAAGC----T--GTT-----TGGTAGTGCCTTATGCTCCTCCTGAGAAACCC-A-AGCGTTGAGATGGCCGTCTATGTCATGTTGGT----GATAAT---CTTTTTAATGTG-ATGTTGTCAGA---AA--ATGTGAAACCAGAGTATGGGTTTGCT-T-GTACCTGTtgattgtttgttaattgattatgttgcatatttttgtgttaaatctcataccccatttattagcccagttttcatctgcttgtagtatatggtgttctttctcctttttaatgattctgtaaagtaagcagtcgtctgtaaataggcagacagctgatttgacgctgtcaggaagataattcatatggcaaaggaacataattggtcttaatacagtgccttggggaactccagagtccacactggttccaactgattgtt
gi|6 : ataatgctagTCTGGATCTTGAT------TAGTACGTTGA--AGTGACC--ACTGCTGGC--TTTAACCCAATGGGAAGGAA---TG--------CGC--ATTAGTCC-AATTTTGTTAGTAG---TGACTTC--AA--A---CACTCGATGGAGTCAGCTTCCACTAAATTGTC-ACTAAGTTTGTTCCCATC-TATGGCAGTTTTCACAAAGAATGTGT-TCTTGTAATTCAATGT-GTTTGT-GAAT---ATTGGTT-TAAAGCAC----TTGGTGCTGTTATTGTTCAAACT---GTTTTCC-ACAATATTTT-TCTGAA-TAAAGTCCTTGTACTGCTTTGCC-CTGACAGTTCATTT--------TGGTCTT----------A-GTGGTTTTAGATAGTGGTCA--ATGTTG-ATGGCCGGTACGTGCCCTTTCACCACCTTGTACAGCAACGTTAGCCTCTGGTGGAGTTGTCTT-----------TCCTGTAGTGGTGGTAGCTCTAGGTCCCTCAGGATGTCG-GAGGCACTTCCTGCTTCCAGG---GATCTGTAGTCTTTTGTTATGAAGTGctggggatctgatcgtcgatggtattgaaattgctgccctgatttctggtgatattaaaggtaatacttttttaatagaattttatttcccaattgttcgcccattgttgaatatcaacttggagaatttggtattcacgaaactatttgatatggtattgaaaaggcagtcatttgcaaagagaggtgtctgcgacttagtcttatctggtaggttgttaatgtgccacaagaacaataggggaccgagaatgctaccttgggatactccaaatacaacatctacttggcggaacttcgcaccttccgctattaccgtacatttcccaatgtgtcaggaagttg
gi|7 : ACAATGGAAAGGAGGTATGGG---AAACATTGATTAGTCCCAAT---GAAAGACGGC-CATTTTA--AA--G---CCGTTAACTGCATCTGCGCATACAACACTATC-CTTCAGTTGGCAAAAGTC-TATAATAGTTTTTGGAAAGAAATAGT-TCTGG-AAT--GAGGC-ACTTTT-GTACTGCACTAGTT-TAAAGCAT----T---TGCTGTTATTTATTGAA-C---GTTTTTCAATAACG-TTA-TCTGACTTACATTC----TATGAATTT--G-CTGGC--TTTAATT--------TGGCGTTTGTCTAGGATA-AGGG--TTA---AGTAGTCAAGACACTGCATAGCTGGCACCAGCACCTCGATCACCTTATAGAAGAAGGATAACCTCT-GTG--CTTTCCTT--TGG------TCTTGAATGGGTGGTAACT-------GTTCATCATA-CGTGTGACGATACATGGGTACCGT----ACT
gi|8 : TCTGGATCTGGATCATGATAAGTACGTTGT--AGAG-CC--TCT--CGGC--ATATGCACAACGGAAAAGAGGGCTGGG---AAACACTGTTTAATCCCAAT---GAATGACGGC-CGATTTC--AA--G---CCGTTAACTGTATCTGCGCACACAACACTATC-TTCTAGTTGGTTCCAGTC-TATAATAGTTTTTGGAAAGTAAGAGT-TCTGA-AAT--AAGGC-ACTTTT-GCAGTGCACTAGTT-CGAAACAT----T---TGCTGTTATTTAATGAA-T---GTCT----ATAA------------------------------ATTT--T-CTGGC--TTTAATT--------TGGCATTTGCCGCGGACA-GGGG--TTA---AATAGTCAAGACATTGCATAGCTGGCACCAGCCCCCCGACCACCTTATAGAAGAAGGATAA---CT-GTG--CTTTCCTT--TGG------TCTTGAAGGGGTGGTCATTGTAAGTCGTTCATgttttttg
gi|9 : aTCTGAATCTGGAT------AAGTACGTTGTGTAGAG-CC--TCT--CGGC--ATATGCACAACGGAAAGAAGGTCTGGG---AAACACTGATTAGTCCCAAT---GAAAGACGGC-CGATTTA--AA--G---CCGTTGACTGTATTTGCGCACACAACACTATC-TTCCAGTTGGTTCCAGTC-TATAATAG-TTTTGGAAAGTAAGAAT-TCTGG-AAT--GAGAT-GCTTTT-GCACTGCACTAATT-TAAAGCAT----T---TGCCGTTATTTAAAGAA-T---GTTTTTCAATAATA-TTG-TCTGATTTGCAGCC----TAAGAATTT--C-CTGGC--TTTAATT--------TGGCGCTTGCCGCAGACAGGGGG--TTA---AATAGTCAAGACATTGCATAGCTGGCACCAGCCCCTCGACCACTTTATAGAAAAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AGTTGACACAGTCAGGGAGGTCGTTTATGTGGCATAGGGACATAATTGATCTTAATACAGTGTCTTAAGGTACTCCAAAGTCCACCATGGTTCAATTTGATTGTT
Alignments
lowQualScore : 111111 1 111 111 111 111111 11111111 111 1111 1111 22222222 111 11111111111 1 1 111 11 11111111111 1 111111 1111111 111 111 1
lowQualScore : 999999 2 99 5 99 99 99 222 1 111 0 3 2 000 5 77 555555 0 1 5 0 0 0 5 0 1 22 1 5 5 77 5 5 0 5 33333333 5555 5 000 1 666 88 8888 2222 3 4444 77 00000000 3 0 1 1 5 0 77 000 0 4 5 2 6 99 66666666666 0 22 1 3 1 2 1 111 0 1 2 1 33 4444 5 11 0 55 66 3 1 11 4 88888888888 0 0 5 5 2 9999 66 555555 0 2 1 1 555 55 1 2 1 0 9999 4 3 2 4 77 22 4 0000000 666 1 0 1 0 444 0 777 0 2 1 4 1
lowQualScore : ...... . .. . .. .. .. ... . ... . . . ... . .. ...... . . . . . . . . . .. . . . .. . . . . ........ .... . ... . ... .. .... .... . .... .. ........ . . . . . . .. ... . . . . . .. ........... . .. . . . . . ... . . . . .. .... . .. . .. .. . . .. . ........... . . . . . .... .. ...... . . . . ... .. . . . . .... . . . . .. .. . ....... ... . . . . ... . ... . . . . .
lowQualScore : 222222 5 22 5 22 22 22 222 0 777 7 5 5 000 7 99 999999 3 6 7 4 7 7 7 1 7 11 0 7 7 99 7 7 7 7 11111111 7777 7 000 4 333 77 4444 1111 0 0000 99 77777777 0 7 7 4 7 7 99 000 7 3 3 5 7 22 77777777777 3 11 4 3 3 5 0 777 7 4 2 6 88 6666 0 99 2 22 99 9 0 11 2 44444444444 2 0 0 0 2 4444 11 000000 8 2 1 4 777 88 1 0 1 1 4444 4 9 9 4 11 88 2 6666666 666 0 4 0 1 666 2 000 0 5 0 2 0
consensus : TCTGGATCTGGAT------AAGTACGTTGT--AGAGACC--TCT--CGGC--ATATGCACAACGGAAAGGAGGTCTGGG---AAACGCTGATTAGTCCCAAT---GAAAGACGGC-CGATTTA--AA--G---CCGTTGACTGTATCTGCGCACACAACACTATC-TTCCAGTTGGTTCCAGTC-TATAATAGTTTTTGGAAAGNAAGAGT-TCTGG-AAT--GAGGC-GCTTTT-GCACTGCACTAGTT-TAAAGCAT----T---TGCTGTTATTTAACGAA-T---GTTTTTCAATAATG-TTN-TCTGANTTGCAGTC----TANGAATTT--C-CTGGC--TTTAATT--------TGGCGTTTGCCGCGGACA-GGGG--TTA---AGTAGTCAAGACATTGCATAGCTGGCACCAGCCCCTCGACCACCTTATAGAAGAAGGATAACCTCT-GTG--CTTTCCTT--CGG------TCTTGAAGGGGTGGTAACTGTAAGTCGTTCATCATA-CGTGTGACGCTACCTGGGTCCCGT---GACTTGTAGTCTCCTGTGACGAAGCGGACGGCTCGGCGCTGTACTTTTTCTAG--TGTNAAGATGTCCT-TTTGTNGGTAAGGATCCCAGAC-GATG--GAACCGTATTCNAGNGTTGATCTAACTAGCGAC-AG------GTACGCTATT-T-TCCTGCATGA----T--GGT-----GGGCAGTGCCTTAGGTTCCTTCTGAGGAAGCC-A-ATGGTCGAGTTGGCTTTCTTGGAGATGTTGGT----GATG-TGGGCGTTCCACT-TG-AGGTCTTCGGA---TA--TTGTGANTCCNAGGTATGGGTTNTCTTG--NACCTGTTGTAGTATAGT-T-TTG-TCGANTTCGTAGAANTGTGA
Reference ( family-619 ) : TCTGGATCTGGAT------AAGTACGTTGT--AGAGACC--TCT--CGGC--ATATGCACAACGGAAAGGAGGTCTGGG---AAACGCTGATTAGTCCCAAT---GAAAGACGGC-CGATTTA--AA--G---CCGTTGACTGTATCTGCGCACACAACACTATC-TTCCAGTTGGTTCCAGTC-TATAATAGTTTTTGGAAAGNAAGAGT-TCTGG-AAT--GAGGC-GCTTTT-GCACTGCACTAGTT-TAAAGCAT----T---TGCTGTTATTTAACGAA-T---GTTTTTCAATAATG-TTN-TCTGANTTGCAGTC----TANGAATTT--C-CTGGC--TTTAATT--------TGGCGTTTGCCGCGGACA-GGGG--TTA---AGTAGTCAAGACATTGCATAGCTGGCACCAGCCCCTCGACCACCTTATAGAAGAAGGATAACCTCT-GTG--CTTTCCTT--CGG------TCTTGAAGGGGTGGTAACTGTAAGTCGTTCATCATA-CGTGTGACGCTACCTGGGTCCCGT---GACTTGTAGTCTCCTGTGACGAAGCGGACGGCTCGGCGCTGTACTTTTTCTAG--TGTNAAGATGTCCT-TTTGTNGGTAAGGATCCCAGAC-GATG--GAACCGTATTCNAGNGTTGATCTAACTAGCGAC-AG------GTACGCTATT-T-TCCTGCATGA----T--GGT-----GGGCAGTGCCTTAGGTTCCTTCTGAGGAAGCC-A-ATGGTCGAGTTGGCTTTCTTGGAGATGTTGGT----GATG-TGGGCGTTCCACT-TG-AGGTCTTCGGA---TA--TTGTGANTCCNAGGTATGGGTTNTCTTG--NACCTGTTGTAGTATAGT-T-TTG-TCGANTTCGTAGAANTGTGA
gi|1 : TCTGAATCTTAAT------AA-TACGTCGT--AGTGACCGATAC--TGGC--TTTTACACGACGGG--GGAG---TGAGCTTAATCGCTC-TTGG-------------ACACTGC-TGATTTG--AAT-GATTCTATTGACT----TTGAGTTAACTATACTGTCACTGC-GTTTATTCAAGTCGTACA-CAGATCTGACAAAATATGAATATCTG---AT--GTTTCCACTTTTTGTACTG-A-TAGTCATAAAGCAC----T---TGCTGTTGTT--ACAAA-TAGAGTTCTCCA-CAATG-TTTGTTTGAAC-GTAGTT----TAAACATTG--T-TTAGC--CCTGATTGTTCTCTTTGG--TTT-CTGTGT-C--------TTT---AGTGTTCAA--TATTG-ATGGCTGGTACGTGCCCTTCCACTATCTTATACAAGAA------CATCA-GT----TGTTGTTGACGGCGTCTCTCCTGCAGGGGTTGTAACTG-GAG--------CATGTCG-ATGACGCATCCT---TCCTGTTGGGACCTGTAATCGCCTGTGATGAATCTGGCAGCAGATCTCTGGATTCTCTCCAGACGGTCAA--TGTCAT-CCTTCTGGTAAGGGTGCCAGAC-GATG--CTTCCGTACTCAAGTTTGGGGCGAACGAGGGCCTAG------GTGCGCGTTC-T-TCCTGAATGA----T--TTT-----GGGCAGTGCCTGAGGTTTCTTCGTAAGAATCCTA-AT-GTTGAGTTGGCACGTTTGCAGGTGTTGTT----TATG-TGGATTTTCCATT-TG-AGGTCTTCTGATTGTA--TTATG---CCGAGCTATGGG--CTCTAGA-AACTTGCTTTAGTATATG-G-TTG-TCGATATTGTAGAAGTG
gi|10 : tTTCTAACTTGTC--GATGTCAC-TTTACAGGTAAGGGTGTCAGAT-GGTG--CATCCATATTCCAGCTTGGATCTGATGAGTGCT-AT------GTAGGC-ATTCT-TTTTACA-GACCTTT--AGT--------CATTGCCTGAGGTTTTGTCGGAGGAATCC-TTATG-TAGAGTTGGCTCATTTGACTATGTTGTT----GATG-TGAGTTTTCCACT-TC-AGGTCATCTGA---TA--TAGTGATTCCCAGGTATGGGTTATCCTG--AATTTGTTgcttgttttgtttctggtactgagagagtagcatttcctggagttaaatttcattccctattctttggcccagagtttaggttgtcgagatctttctgtagttagaatggtcgtttatggagttgatggcgcgatataacaggcagtcgtcggcaaaaaggcggatctgtgactttacccggtctgggtggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcaacctgacgggatctctcaccttccactatgacactcatctttcgttgcttgagaaagtt
gi|11 : gatctctggacacgTTTCCTT--CGG------TCTTGAAGGGGTGGTAATTGTAAATCATTCATCATA-CATGTGACGCTACCTTGGTCCCGT---GACTTGTAGTCTCTTGTGACGAAGCGGACGGCTTGGCGCTGTACTTTCTCTAG--TGTAAAGATGTCCT-TTTGTTAGTAAGGATCCCAGAC-GATG--GAACAGTATTATAGGGTTGCTATAACTTGTGAC-AG------GTATGCCATT-T-TCCTGCAAGA----T--GGtaaggatcacatcattgatagtgcat
gi|12 : CTGTACCTTTTCTAG--TATAAAGATGCCCT-TTTGTTGATAAGGATCCCAGAC-AATA--GAACAGTACCCTAGGGTTGATCTGGCTTGTGAA-AG------GTACGTTATT-T-TCCTGCATGA----T--TGTGGACAGGACAGTGTTTCAAGTTTCTTCTAAGGAAACC-A-ATGGTCGAGTTTGCTTTTTTGGAGATCTTGGT----GACG-TGGGCGCTCCACT-TA-AGGTATTCAGA---TT--TTG
gi|13 : CTGTAACCAAGCGTGCTCCACGGCGCTGAACTTTTTCTAG--TGCTGAGATGTCCTGTTTGTAGG-AGAGATTCCAGACAGATGATGAA---TATTCGAGATGTGGTCGGACTcc
gi|14 : CATAA----T--GGT-----TGGCAATGTCGCATGA-CCTTCTAAGAAAGTC-A-ATGGTCAAGTTTGCTT-CTTGAAGATCTTGGT----GATA-TGGTCGTTTCACT-TA-AGGTATTta
gi|16 : gattCC-A-AGTATTGAGTTGGCACTCTTTGTTATGTTAGT----GATG-T-GGTTTTCCATG-TG-A-GTTGTCAGA---AA--ATGTGATATCAAGG-ATGGATTGTCTTG--TACCTGCTgatg
gi|17 : cTCTGGCTCTGGAT------AATTACGTTGA--AGA-ACC--TCT--CGTCATATATGCACAGCGGAt
gi|2 : aT---GAAACTCGACACGGTTCAGTAACTG---TCATTAACTGTATCTGTGCCTACAACACTATT-TTTCAGT----------C-TATAATAGTTTTTCAGAAGAAAGAGT-TCTGG-AAT--GAGGC-ACTTTT-GCACTGCACTTGTT-TAAAGCATACATT---TGCTGTTATTTTATGGA-T---GTTTTTCAATAATG-TTA-TCTGATTTACAGTC----TATGAATTT--TTCTGAC--TTTGATT--------TGGCTTTTGTCATGGATA-GCGG--TTA---AGAAGTCAAGACATTGCACAGCTGGCACCAGCCTCTAGACCACCTTATAGAA---GGATAACCACC-AAG--CTTTCCTT--CTG------TCTTGAAGGGGTGATAATTGTAGGTTGTTTATCATA-CGGGTAACTCTACTTGGGTATGTT---GTTTTGTAGTCTCCTGTGATGAAGTGGACAGCTTGACACTGTATTTTTTCAAA--TAAGACAATGTCCT-TTTGTAGATAAGGATCCCAGAT-GATA--AAACAGTATTCTAGGGTTGAGCTAACTAGCA---AG------GTACACTATT-T-TCCAGCATGA----T--GGT-----GGGCAGTGTTTTTAGTTCTTTCTAAGGAAGCC-A-AAGGTCGAGTTTGCTTTCTTGGAGATATTAGT----GATG-TTGGCGCTCCACT-TA-AGGTCTTCAGA---TA--TTGTCTCTCCCAGATAGGGGTTTTC-TGAAAACTTGTTGTAGTATGGT-T-TTG-TTGAGTTTGTAGAATTGTGA
gi|3 : TCTGGATCTGGAT------AAGTACGTTGT--AGAG-CC--TCT--CGGC--ATATGCACAACGGAAAGAAGGTCTGGG---AAACACTGATTAGTCCCATT---GAAAGACGGC-CGATTTA--AA--G---CCGTTGACTATATTTGCGCACACAACACTATC-TTCCAGTTGGTTCCAGTC-TATAATAGTTTTTAAAAAGTAAGAGT-TCTGG-AAT--AAGAT-GCTTTT-GCACTGCACTAATT-TAAAGCAT----T---TGCTGTTATTTAAAGAA-T---GTTTTTCAATAATA-TTG-TCTGATTTGCAGCC----TAGGAATTT--C-CTGGC--TTTAATT--------TGGCGCTTGCCGCGGACA-GGGG--TTA---AATAGTCAAGACATTGCATAGCTGGCACCAGTCCCTCGACCACCTTATAGAAAAAGGATAACCTCT-GTG--CTTTCCTA--CGG------TCTTGGAGGGGTGGTAATTGTAAGTCGTTCATCATA-CGTGTGACGCTACCTGGGTCCCGT---GACTTGTAGTCTCCTGTGATGAAGCGGACGGCTTGGCGCTGTACTTTCTCTAG--TGTAAAGATGTCCT-TTTGTTGGTAAGGATCCCAGAC-GATG--GAACAGTATTCTAGGGTTGATCTTACTAGTGAC-AG------GTATGCCATT-T-TTCTGCATGA----T--GGT-----GGACAGTGTTTTAGGTTCCTTCTAAGGAAGCC-A-ATGGTCGAGTTTGCTTTTTTGGAGATCTTGGT----GATG-TGAGCGCTCCACT-TA-AGGTCTTCGGA---TA--TTGTCACTCCAAGATATGGGTTTACTGG--TACTTGTTGTAGTATAGT-T-TTG-TCTAGTTCATAGAAATGTGAtgatttgctgttcatgctgattaaatttaaaacgcaaaccccatgtattagcccatttctcttgttcttgcaagtcctgttggagggcgatgtggtcttctgtgcttttggcgactccatgaagtagacaatc
gi|4 : TCGGTGTTGGTTCCTTTCTAG--TTTGTCTATATCCC-TTTA-ATGTATGGGTTCCAGA----TG--GCGCCATATTCCATCACTGATCTAACTAGGGAT-ATATAAATGTAACCTGTT-T-TTCGGCATGG----TTCGG------GGAC-GTTCCGTAAATTTCTCCCGAGAAAGCC-T-AGTGTTGTATTGGATTTGCTGCATATGTTGTTTATAAATA-TGTATATTGCATT-TTCAGGTTGTTGAA---AAATTTG-GAGTCCTATATATGGGTTGTCTTG--GACCTGTTGTAGTATAATATGTTGTTCTATTTGGTAGAACTTTGA
gi|5 : ctgtaatcattttttatgtacccgattgaCGTATTCAAATGTGGACCGAATGAGCGTT-AT------GTACAC-ATT-CATCTTGCAAGC----T--GTT-----TGGTAGTGCCTTATGCTCCTCCTGAGAAACCC-A-AGCGTTGAGATGGCCGTCTATGTCATGTTGGT----GATAAT---CTTTTTAATGTG-ATGTTGTCAGA---AA--ATGTGAAACCAGAGTATGGGTTTGCTTG--TACCTGTtgattgtttgttaattgattatgttgcatatttttgtgttaaatctcataccccatttattagcccagttttcatctgcttgtagtatatggtgttctttctcctttttaatgattctgtaaagtaagcagtcgtctgtaaataggcagacagctgatttgacgctgtcaggaagataattcatatggcaaaggaacataattggtcttaatacagtgccttggggaactccagagtccacactggttccaactgattgtt
gi|6 : ataatgctagTCTGGATCTTGAT------TAGTACGTTGA--AGTGACC--ACTGCTGGC--TTTAACCCAATGGGAAGGAA---TG--------CGC--ATTAGTCC-AATTTTGTTAGTAG---TGACTTC--AA--A---CACTCGATGGAGTCAGCTTCCACTAAATTGTC-ACTAAGTTTGTTCCCATC-TATGGCAGTTTTCACAAAGAATGTGT-TCTTGTAATTCAATGT-GTTTGT-GAAT---ATTGGTT-TAAAGCAC----TTGGTGCTGTTATTGTTCAAACT---GTTTTCC-ACAATATTTT-TCTGAA-TAAAGTCCTTGTACTGCTTTGCC-CTGACAGTTCATTT--------TGGTCTT----------A-GTGGTTTTAGATAGTGGTCA--ATGTTG-ATGGCCGGTACGTGCCCTTTCACCACCTTGTACAGCAACGTTAGCCTCTGGTGGAGTTGTCTT-----------TCCTGTAGTGGTGGTAGCTCTAGGTCCCTCAGGATGTCG-GAGGCACTTCCTGCTTCCAGG---GATCTGTAGTCTTTTGTTATGAAGTGctggggatctgatcgtcgatggtattgaaattgctgccctgatttctggtgatattaaaggtaatacttttttaatagaattttatttcccaattgttcgcccattgttgaatatcaacttggagaatttggtattcacgaaactatttgatatggtattgaaaaggcagtcatttgcaaagagaggtgtctgcgacttagtcttatctggtaggttgttaatgtgccacaagaacaataggggaccgagaatgctaccttgggatactccaaatacaacatctacttggcggaacttcgcaccttccgctattaccgtacatttcccaatgtgtcaggaagttg
gi|7 : ACAATGGAAAGGAGGTATGGG---AAACATTGATTAGTCCCAAT---GAAAGACGGC-CATTTTA--AA--G---CCGTTAACTGCATCTGCGCATACAACACTATC-CTTCAGTTGGCAAAAGTC-TATAATAGTTTTTGGAAAGAAATAGT-TCTGG-AAT--GAGGC-ACTTTT-GTACTGCACTAGTT-TAAAGCAT----T---TGCTGTTATTTATTGAA-C---GTTTTTCAATAACG-TTA-TCTGACTTACATTC----TATGAATTT--G-CTGGC--TTTAATT--------TGGCGTTTGTCTAGGATA-AGGG--TTA---AGTAGTCAAGACACTGCATAGCTGGCACCAGCACCTCGATCACCTTATAGAAGAAGGATAACCTCT-GTG--CTTTCCTT--TGG------TCTTGAATGGGTGGTAACT-------GTTCATCATA-CGTGTGACGATACATGGGTACCGT----ACT
gi|8 : TCTGGATCTGGATCATGATAAGTACGTTGT--AGAG-CC--TCT--CGGC--ATATGCACAACGGAAAAGAGGGCTGGG---AAACACTGTTTAATCCCAAT---GAATGACGGC-CGATTTC--AA--G---CCGTTAACTGTATCTGCGCACACAACACTATC-TTCTAGTTGGTTCCAGTC-TATAATAGTTTTTGGAAAGTAAGAGT-TCTGA-AAT--AAGGC-ACTTTT-GCAGTGCACTAGTT-CGAAACAT----T---TGCTGTTATTTAATGAA-T---GTCT----ATAA------------------------------ATTT--T-CTGGC--TTTAATT--------TGGCATTTGCCGCGGACA-GGGG--TTA---AATAGTCAAGACATTGCATAGCTGGCACCAGCCCCCCGACCACCTTATAGAAGAAGGATAA---CT-GTG--CTTTCCTT--TGG------TCTTGAAGGGGTGGTCATTGTAAGTCGTTCATgttttttg
gi|9 : aTCTGAATCTGGAT------AAGTACGTTGTGTAGAG-CC--TCT--CGGC--ATATGCACAACGGAAAGAAGGTCTGGG---AAACACTGATTAGTCCCAAT---GAAAGACGGC-CGATTTA--AA--G---CCGTTGACTGTATTTGCGCACACAACACTATC-TTCCAGTTGGTTCCAGTC-TATAATAG-TTTTGGAAAGTAAGAAT-TCTGG-AAT--GAGAT-GCTTTT-GCACTGCACTAATT-TAAAGCAT----T---TGCCGTTATTTAAAGAA-T---GTTTTTCAATAATA-TTG-TCTGATTTGCAGCC----TAAGAATTT--C-CTGGC--TTTAATT--------TGGCGCTTGCCGCAGACAGGGGG--TTA---AATAGTCAAGACATTGCATAGCTGGCACCAGCCCCTCGACCACTTTATAGAAAAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AGTTGACACAGTCAGGGAGGTCGTTTATGTGGCATAGGGACATAATTGATCTTAATACAGTGTCTTAAGGTACTCCAAAGTCCACCATGGTTCAATTTGATTGTT
Alignments
lowQualScore : 111111 1 111 111 111 111111 11111111 111 1111 1111 22222222 111 11111111111 1 1 111 11 11111111111 1 111111 1111111 111 111 1
lowQualScore : 999999 2 99 5 99 99 99 222 1 111 0 3 2 000 5 77 555555 0 1 5 0 0 0 5 0 1 22 1 5 5 77 5 5 0 5 33333333 5555 5 000 1 666 88 8888 2222 3 4444 77 00000000 3 0 1 1 5 0 77 000 0 4 5 2 6 99 66666666666 0 22 1 3 1 2 1 111 0 1 2 1 33 4444 5 11 0 55 66 3 1 11 4 88888888888 0 0 5 5 2 9999 66 555555 0 2 1 1 555 55 1 2 1 0 9999 4 3 2 4 77 22 4 0000000 666 1 0 1 0 444 0 777 0 2 1 4 1
lowQualScore : ...... . .. . .. .. .. ... . ... . . . ... . .. ...... . . . . . . . . . .. . . . .. . . . . ........ .... . ... . ... .. .... .... . .... .. ........ . . . . . . .. ... . . . . . .. ........... . .. . . . . . ... . . . . .. .... . .. . .. .. . . .. . ........... . . . . . .... .. ...... . . . . ... .. . . . . .... . . . . .. .. . ....... ... . . . . ... . ... . . . . .
lowQualScore : 222222 5 22 5 22 22 22 222 0 777 7 5 5 000 7 99 999999 3 6 7 4 7 7 7 1 7 11 0 7 7 99 7 7 7 7 11111111 7777 7 000 4 333 77 4444 1111 0 0000 99 77777777 0 7 7 4 7 7 99 000 7 3 3 5 7 22 77777777777 3 11 4 3 3 5 0 777 7 4 2 6 88 6666 0 99 2 22 99 9 0 11 2 44444444444 2 0 0 0 2 4444 11 000000 8 2 1 4 777 88 1 0 1 1 4444 4 9 9 4 11 88 2 6666666 666 0 4 0 1 666 2 000 0 5 0 2 0
consensus : TCTGGATCTGGAT------AAGTACGTTGT--AGAGACC--TCT--CGGC--ATATGCACAACGGAAAGGAGGTCTGGG---AAACGCTGATTAGTCCCAAT---GAAAGACGGC-CGATTTA--AA--G---CCGTTGACTGTATCTGCGCACACAACACTATC-TTCCAGTTGGTTCCAGTC-TATAATAGTTTTTGGAAAGNAAGAGT-TCTGG-AAT--GAGGC-GCTTTT-GCACTGCACTAGTT-TAAAGCAT----T---TGCTGTTATTTAACGAA-T---GTTTTTCAATAATG-TTN-TCTGANTTGCAGTC----TANGAATTT--C-CTGGC--TTTAATT--------TGGCGTTTGCCGCGGACA-GGGG--TTA---AGTAGTCAAGACATTGCATAGCTGGCACCAGCCCCTCGACCACCTTATAGAAGAAGGATAACCTCT-GTG--CTTTCCTT--CGG------TCTTGAAGGGGTGGTAACTGTAAGTCGTTCATCATA-CGTGTGACGCTACCTGGGTCCCGT---GACTTGTAGTCTCCTGTGACGAAGCGGACGGCTCGGCGCTGTACTTTTTCTAG--TGTNAAGATGTCCT-TTTGTNGGTAAGGATCCCAGAC-GATG--GAACCGTATTCNAGNGTTGATCTAACTAGCGAC-AG------GTACGCTATT-T-TCCTGCATGA----T--GGT-----GGGCAGTGCCTTAGGTTCCTTCTGAGGAAGCC-A-ATGGTCGAGTTGGCTTTCTTGGAGATGTTGGT----GATG-TGGGCGTTCCACT-TG-AGGTCTTCGGA---TA--TTGTGANTCCNAGGTATGGGTTNTCTTG--NACCTGTTGTAGTATAGT-T-TTG-TCGANTTCGTAGAANTGTGA
Reference ( family-619 ) : TCTGGATCTGGAT------AAGTACGTTGT--AGAGACC--TCT--CGGC--ATATGCACAACGGAAAGGAGGTCTGGG---AAACGCTGATTAGTCCCAAT---GAAAGACGGC-CGATTTA--AA--G---CCGTTGACTGTATCTGCGCACACAACACTATC-TTCCAGTTGGTTCCAGTC-TATAATAGTTTTTGGAAAGNAAGAGT-TCTGG-AAT--GAGGC-GCTTTT-GCACTGCACTAGTT-TAAAGCAT----T---TGCTGTTATTTAACGAA-T---GTTTTTCAATAATG-TTN-TCTGANTTGCAGTC----TANGAATTT--C-CTGGC--TTTAATT--------TGGCGTTTGCCGCGGACA-GGGG--TTA---AGTAGTCAAGACATTGCATAGCTGGCACCAGCCCCTCGACCACCTTATAGAAGAAGGATAACCTCT-GTG--CTTTCCTT--CGG------TCTTGAAGGGGTGGTAACTGTAAGTCGTTCATCATA-CGTGTGACGCTACCTGGGTCCCGT---GACTTGTAGTCTCCTGTGACGAAGCGGACGGCTCGGCGCTGTACTTTTTCTAG--TGTNAAGATGTCCT-TTTGTNGGTAAGGATCCCAGAC-GATG--GAACCGTATTCNAGNGTTGATCTAACTAGCGAC-AG------GTACGCTATT-T-TCCTGCATGA----T--GGT-----GGGCAGTGCCTTAGGTTCCTTCTGAGGAAGCC-A-ATGGTCGAGTTGGCTTTCTTGGAGATGTTGGT----GATG-TGGGCGTTCCACT-TG-AGGTCTTCGGA---TA--TTGTGANTCCNAGGTATGGGTTNTCTTG--NACCTGTTGTAGTATAGT-T-TTG-TCGANTTCGTAGAANTGTGA
gi|1 : TCTGAATCTTAAT------AA-TACGTCGT--AGTGACCGATAC--TGGC--TTTTACACGACGGG--GGAG---TGAGCTTAATCGCTC-TTGG-------------ACACTGC-TGATTTG--AAT-GATTCTATTGACT----TTGAGTTAACTATACTGTCACTGC-GTTTATTCAAGTCGTACA-CAGATCTGACAAAATATGAATATCTG---AT--GTTTCCACTTTTTGTACTG-A-TAGTCATAAAGCAC----T---TGCTGTTGTT--ACAAA-TAGAGTTCTCCA-CAATG-TTTGTTTGAAC-GTAGTT----TAAACATTG--T-TTAGC--CCTGATTGTTCTCTTTGG--TTT-CTGTGT-C--------TTT---AGTGTTCAA--TATTG-ATGGCTGGTACGTGCCCTTCCACTATCTTATACAAGAA------CATCA-GT----TGTTGTTGACGGCGTCTCTCCTGCAGGGGTTGTAACTG-GAG--------CATGTCG-ATGACGCATCCT---TCCTGTTGGGACCTGTAATCGCCTGTGATGAATCTGGCAGCAGATCTCTGGATTCTCTCCAGACGGTCAA--TGTCAT-CCTTCTGGTAAGGGTGCCAGAC-GATG--CTTCCGTACTCAAGTTTGGGGCGAACGAGGGCCTAG------GTGCGCGTTC-T-TCCTGAATGA----T--TTT-----GGGCAGTGCCTGAGGTTTCTTCGTAAGAATCCTA-AT-GTTGAGTTGGCACGTTTGCAGGTGTTGTT----TATG-TGGATTTTCCATT-TG-AGGTCTTCTGATTGTA--TTATG---CCGAGCTATGGG--CTCTAGA-AACTTGCTTTAGTATATG-G-TTG-TCGATATTGTAGAAGTG
gi|10 : tTTCTAACTTGTC--GATGTCAC-TTTACAGGTAAGGGTGTCAGAT-GGTG--CATCCATATTCCAGCTTGGATCTGATGAGTGCT-AT------GTAGGC-ATTCT-TTTTACA-GACCTTT--AGT--------CATTGCCTGAGGTTTTGTCGGAGGAATCC-TTATG-TAGAGTTGGCTCATTTGACTATGTTGTT----GATG-TGAGTTTTCCACT-TC-AGGTCATCTGA---TA--TAGTGATTCCCAGGTATGGGTTATCCTG--AATTTGTTgcttgttttgtttctggtactgagagagtagcatttcctggagttaaatttcattccctattctttggcccagagtttaggttgtcgagatctttctgtagttagaatggtcgtttatggagttgatggcgcgatataacaggcagtcgtcggcaaaaaggcggatctgtgactttacccggtctgggtggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcaacctgacgggatctctcaccttccactatgacactcatctttcgttgcttgagaaagtt
gi|11 : gatctctggacacgTTTCCTT--CGG------TCTTGAAGGGGTGGTAATTGTAAATCATTCATCATA-CATGTGACGCTACCTTGGTCCCGT---GACTTGTAGTCTCTTGTGACGAAGCGGACGGCTTGGCGCTGTACTTTCTCTAG--TGTAAAGATGTCCT-TTTGTTAGTAAGGATCCCAGAC-GATG--GAACAGTATTATAGGGTTGCTATAACTTGTGAC-AG------GTATGCCATT-T-TCCTGCAAGA----T--GGtaaggatcacatcattgatagtgcat
gi|12 : CTGTACCTTTTCTAG--TATAAAGATGCCCT-TTTGTTGATAAGGATCCCAGAC-AATA--GAACAGTACCCTAGGGTTGATCTGGCTTGTGAA-AG------GTACGTTATT-T-TCCTGCATGA----T--TGTGGACAGGACAGTGTTTCAAGTTTCTTCTAAGGAAACC-A-ATGGTCGAGTTTGCTTTTTTGGAGATCTTGGT----GACG-TGGGCGCTCCACT-TA-AGGTATTCAGA---TT--TTG
gi|13 : CTGTAACCAAGCGTGCTCCACGGCGCTGAACTTTTTCTAG--TGCTGAGATGTCCTGTTTGTAGG-AGAGATTCCAGACAGATGATGAA---TATTCGAGATGTGGTCGGACTcc
gi|14 : CATAA----T--GGT-----TGGCAATGTCGCATGA-CCTTCTAAGAAAGTC-A-ATGGTCAAGTTTGCTT-CTTGAAGATCTTGGT----GATA-TGGTCGTTTCACT-TA-AGGTATTta
gi|16 : gattCC-A-AGTATTGAGTTGGCACTCTTTGTTATGTTAGT----GATG-T-GGTTTTCCATG-TG-A-GTTGTCAGA---AA--ATGTGATATCAAGG-ATGGATTGTCTTG--TACCTGCTgatg
gi|17 : cTCTGGCTCTGGAT------AATTACGTTGA--AGA-ACC--TCT--CGTCATATATGCACAGCGGAt
gi|2 : aT---GAAACTCGACACGGTTCAGTAACTG---TCATTAACTGTATCTGTGCCTACAACACTATT-TTTCAGT----------C-TATAATAGTTTTTCAGAAGAAAGAGT-TCTGG-AAT--GAGGC-ACTTTT-GCACTGCACTTGTT-TAAAGCATACATT---TGCTGTTATTTTATGGA-T---GTTTTTCAATAATG-TTA-TCTGATTTACAGTC----TATGAATTT--TTCTGAC--TTTGATT--------TGGCTTTTGTCATGGATA-GCGG--TTA---AGAAGTCAAGACATTGCACAGCTGGCACCAGCCTCTAGACCACCTTATAGAA---GGATAACCACC-AAG--CTTTCCTT--CTG------TCTTGAAGGGGTGATAATTGTAGGTTGTTTATCATA-CGGGTAACTCTACTTGGGTATGTT---GTTTTGTAGTCTCCTGTGATGAAGTGGACAGCTTGACACTGTATTTTTTCAAA--TAAGACAATGTCCT-TTTGTAGATAAGGATCCCAGAT-GATA--AAACAGTATTCTAGGGTTGAGCTAACTAGCA---AG------GTACACTATT-T-TCCAGCATGA----T--GGT-----GGGCAGTGTTTTTAGTTCTTTCTAAGGAAGCC-A-AAGGTCGAGTTTGCTTTCTTGGAGATATTAGT----GATG-TTGGCGCTCCACT-TA-AGGTCTTCAGA---TA--TTGTCTCTCCCAGATAGGGGTTTTC-TGAAAACTTGTTGTAGTATGGT-T-TTG-TTGAGTTTGTAGAATTGTGA
gi|3 : TCTGGATCTGGAT------AAGTACGTTGT--AGAG-CC--TCT--CGGC--ATATGCACAACGGAAAGAAGGTCTGGG---AAACACTGATTAGTCCCATT---GAAAGACGGC-CGATTTA--AA--G---CCGTTGACTATATTTGCGCACACAACACTATC-TTCCAGTTGGTTCCAGTC-TATAATAGTTTTTAAAAAGTAAGAGT-TCTGG-AAT--AAGAT-GCTTTT-GCACTGCACTAATT-TAAAGCAT----T---TGCTGTTATTTAAAGAA-T---GTTTTTCAATAATA-TTG-TCTGATTTGCAGCC----TAGGAATTT--C-CTGGC--TTTAATT--------TGGCGCTTGCCGCGGACA-GGGG--TTA---AATAGTCAAGACATTGCATAGCTGGCACCAGTCCCTCGACCACCTTATAGAAAAAGGATAACCTCT-GTG--CTTTCCTA--CGG------TCTTGGAGGGGTGGTAATTGTAAGTCGTTCATCATA-CGTGTGACGCTACCTGGGTCCCGT---GACTTGTAGTCTCCTGTGATGAAGCGGACGGCTTGGCGCTGTACTTTCTCTAG--TGTAAAGATGTCCT-TTTGTTGGTAAGGATCCCAGAC-GATG--GAACAGTATTCTAGGGTTGATCTTACTAGTGAC-AG------GTATGCCATT-T-TTCTGCATGA----T--GGT-----GGACAGTGTTTTAGGTTCCTTCTAAGGAAGCC-A-ATGGTCGAGTTTGCTTTTTTGGAGATCTTGGT----GATG-TGAGCGCTCCACT-TA-AGGTCTTCGGA---TA--TTGTCACTCCAAGATATGGGTTTACTGG--TACTTGTTGTAGTATAGT-T-TTG-TCTAGTTCATAGAAATGTGAtgatttgctgttcatgctgattaaatttaaaacgcaaaccccatgtattagcccatttctcttgttcttgcaagtcctgttggagggcgatgtggtcttctgtgcttttggcgactccatgaagtagacaatc
gi|4 : TCGGTGTTGGTTCCTTTCTAG--TTTGTCTATATCCC-TTTA-ATGTATGGGTTCCAGA----TG--GCGCCATATTCCATCACTGATCTAACTAGGGAT-ATATAAATGTAACCTGTT-T-TTCGGCATGG----TTCGG------GGAC-GTTCCGTAAATTTCTCCCGAGAAAGCC-T-AGTGTTGTATTGGATTTGCTGCATATGTTGTTTATAAATA-TGTATATTGCATT-TTCAGGTTGTTGAA---AAATTTG-GAGTCCTATATATGGGTTGTCTTG--GACCTGTTGTAGTATAATATGTTGTTCTATTTGGTAGAACTTTGA
gi|5 : ctgtaatcattttttatgtacccgattgaCGTATTCAAATGTGGACCGAATGAGCGTT-AT------GTACAC-ATT-CATCTTGCAAGC----T--GTT-----TGGTAGTGCCTTATGCTCCTCCTGAGAAACCC-A-AGCGTTGAGATGGCCGTCTATGTCATGTTGGT----GATAAT---CTTTTTAATGTG-ATGTTGTCAGA---AA--ATGTGAAACCAGAGTATGGGTTTGCTTG--TACCTGTtgattgtttgttaattgattatgttgcatatttttgtgttaaatctcataccccatttattagcccagttttcatctgcttgtagtatatggtgttctttctcctttttaatgattctgtaaagtaagcagtcgtctgtaaataggcagacagctgatttgacgctgtcaggaagataattcatatggcaaaggaacataattggtcttaatacagtgccttggggaactccagagtccacactggttccaactgattgtt
gi|6 : ataatgctagTCTGGATCTTGAT------TAGTACGTTGA--AGTGACC--ACTGCTGGC--TTTAACCCAATGGGAAGGAA---TG--------CGC--ATTAGTCC-AATTTTGTTAGTAG---TGACTTC--AA--A---CACTCGATGGAGTCAGCTTCCACTAAATTGTC-ACTAAGTTTGTTCCCATC-TATGGCAGTTTTCACAAAGAATGTGT-TCTTGTAATTCAATGT-GTTTGT-GAAT---ATTGGTT-TAAAGCAC----TTGGTGCTGTTATTGTTCAAACT---GTTTTCC-ACAATATTTT-TCTGAA-TAAAGTCCTTGTACTGCTTTGCC-CTGACAGTTCATTT--------TGGTCTT----------A-GTGGTTTTAGATAGTGGTCA--ATGTTG-ATGGCCGGTACGTGCCCTTTCACCACCTTGTACAGCAACGTTAGCCTCTGGTGGAGTTGTCTT-----------TCCTGTAGTGGTGGTAGCTCTAGGTCCCTCAGGATGTCG-GAGGCACTTCCTGCTTCCAGG---GATCTGTAGTCTTTTGTTATGAAGTGctggggatctgatcgtcgatggtattgaaattgctgccctgatttctggtgatattaaaggtaatacttttttaatagaattttatttcccaattgttcgcccattgttgaatatcaacttggagaatttggtattcacgaaactatttgatatggtattgaaaaggcagtcatttgcaaagagaggtgtctgcgacttagtcttatctggtaggttgttaatgtgccacaagaacaataggggaccgagaatgctaccttgggatactccaaatacaacatctacttggcggaacttcgcaccttccgctattaccgtacatttcccaatgtgtcaggaagttg
gi|7 : ACAATGGAAAGGAGGTATGGG---AAACATTGATTAGTCCCAAT---GAAAGACGGC-CATTTTA--AA--G---CCGTTAACTGCATCTGCGCATACAACACTATC-CTTCAGTTGGCAAAAGTC-TATAATAGTTTTTGGAAAGAAATAGT-TCTGG-AAT--GAGGC-ACTTTT-GTACTGCACTAGTT-TAAAGCAT----T---TGCTGTTATTTATTGAA-C---GTTTTTCAATAACG-TTA-TCTGACTTACATTC----TATGAATTT--G-CTGGC--TTTAATT--------TGGCGTTTGTCTAGGATA-AGGG--TTA---AGTAGTCAAGACACTGCATAGCTGGCACCAGCACCTCGATCACCTTATAGAAGAAGGATAACCTCT-GTG--CTTTCCTT--TGG------TCTTGAATGGGTGGTAACT-------GTTCATCATA-CGTGTGACGATACATGGGTACCGT----ACT
gi|8 : TCTGGATCTGGATCATGATAAGTACGTTGT--AGAG-CC--TCT--CGGC--ATATGCACAACGGAAAAGAGGGCTGGG---AAACACTGTTTAATCCCAAT---GAATGACGGC-CGATTTC--AA--G---CCGTTAACTGTATCTGCGCACACAACACTATC-TTCTAGTTGGTTCCAGTC-TATAATAGTTTTTGGAAAGTAAGAGT-TCTGA-AAT--AAGGC-ACTTTT-GCAGTGCACTAGTT-CGAAACAT----T---TGCTGTTATTTAATGAA-T---GTCT----ATAA------------------------------ATTT--T-CTGGC--TTTAATT--------TGGCATTTGCCGCGGACA-GGGG--TTA---AATAGTCAAGACATTGCATAGCTGGCACCAGCCCCCCGACCACCTTATAGAAGAAGGATAA---CT-GTG--CTTTCCTT--TGG------TCTTGAAGGGGTGGTCATTGTAAGTCGTTCATgttttttg
gi|9 : aTCTGAATCTGGAT------AAGTACGTTGTGTAGAG-CC--TCT--CGGC--ATATGCACAACGGAAAGAAGGTCTGGG---AAACACTGATTAGTCCCAAT---GAAAGACGGC-CGATTTA--AA--G---CCGTTGACTGTATTTGCGCACACAACACTATC-TTCCAGTTGGTTCCAGTC-TATAATAG-TTTTGGAAAGTAAGAAT-TCTGG-AAT--GAGAT-GCTTTT-GCACTGCACTAATT-TAAAGCAT----T---TGCCGTTATTTAAAGAA-T---GTTTTTCAATAATA-TTG-TCTGATTTGCAGCC----TAAGAATTT--C-CTGGC--TTTAATT--------TGGCGCTTGCCGCAGACAGGGGG--TTA---AATAGTCAAGACATTGCATAGCTGGCACCAGCCCCTCGACCACTTTATAGAAAAA
blockSeqs : CATGAT T GT A . GC AT GTC G . A C TTT A GT CTG C . . T CA A . T TC . . . ACATT TTAT C . A TAT A TTTA CTTG T GCC AG . T T A G TT GAT C A G G GA CGG GT T T T T C . G T T CT AAAG G CA CA AT C C CT T ATATATAAAT C C A A CCTT TC GGACAG G G T TT TG G A T TATA A G T G TC CA T AAAT ATT C A AAA ATG T G G T T
blockSeqs : . G . A . . . GTA G . A C . . . G A . . T AA T . . . . . . TTGG TAAA . . A TG G TTTG . G TT . . G C A . . . C C G . . CTG GT T . G G G . T C T . AAAG . TT T . A T GG T CTAT T . . T . . T A A A A TG T T G . . G G . C AT A TA ATA A G A T . T G C A
blockSeqs : . G . . . . . GGC G . A C . . . A C . . T AC A . . . . . . T GTTC . . A TA T CTTA . C C . . C A A . . . C G C . . CGG GT T . T G C . A T A . TGAG . TT C . A T GG T ACAG T . . T . . G T A G A TG T T G . . G G . A AT A TT TCT C T T T . T T G C
blockSeqs : . G . . . . . GTC G . T C . . . G A . . T GG A . . . . . . T TATT . . A CG A TTTG . T G . . G C A . . . C G G . . TGG CT T . T G A . G T T . GACA . TA C . A G AT C AAAG C . . T . . G A A G A GT G T T . . T T . A TG A AA ACT A T T
blockSeqs : . G . . . . . . . . A . . . . G A . . T GG T . . . . . . T TAAT . . . TA G ATA . A T . . A C A . . . C A G . . TGG GT T . . G C . C T . AAAG . TA T . A T GG T ACAG T . . T . . G G A G A AG T T G . . G G . G CT G TA AGT T G G
blockSeqs : . . . G A . . . GG T . . . . . . T TAAA . . . . . . . . C . . G . . . . . . . . . . G . GTCT . TT C . C T GG G TTAT . . . T . . T A G G A TG T T G . . G G . A CT G TA AAA A T T
blockSeqs : . CG . A . . C C CA C AG . . . A . . . T G C T GT G T T . . . A . A TG A AA
blockSeqs : . A TG . . . A GC G . C . . . T . G TG
blockSeqCons : ** GTC *** G***** TAAN *** G* TTTG ******** CGG******** GT *** ** AAAG ACAG******* A** NG TA***** ANT T**
originalCons : TCTGGATCTGGAT------AAGTACGTTGT--AGAGACC--TCT--CGGC--ATATGCACAACGGAAAGGAGGTCTGGG---AAACGCTGATTAGTCCCAAT---GAAAGACGGC-CGATTTA--AA--G---CCGTTGACTGTATCTGCGCACACAACACTATC-TTCCAGTTGGTTCCAGTC-TATAATAGTTTTTGGAAAGNAAGAGT-TCTGG-AAT--GAGGC-GCTTTT-GCACTGCACTAGTT-TAAAGCAT----T---TGCTGTTATTTAACGAA-T---GTTTTTCAATAATG-TTN-TCTGANTTGCAGTC----TANGAATTT--C-CTGGC--TTTAATT--------TGGCGTTTGCCGCGGACA-GGGG--TTA---AGTAGTCAAGACATTGCATAGCTGGCACCAGCCCCTCGACCACCTTATAGAAGAAGGATAACCTCT-GTG--CTTTCCTT--CGG------TCTTGAAGGGGTGGTAACTGTAAGTCGTTCATCATA-CGTGTGACGCTACCTGGGTCCCGT---GACTTGTAGTCTCCTGTGACGAAGCGGACGGCTCGGCGCTGTACTTTTTCTAG--TGTNAAGATGTCCT-TTTGTNGGTAAGGATCCCAGAC-GATG--GAACCGTATTCNAGNGTTGATCTAACTAGCGAC-AG------GTACGCTATT-T-TCCTGCATGA----T--GGT-----GGGCAGTGCCTTAGGTTCCTTCTGAGGAAGCC-A-ATGGTCGAGTTGGCTTTCTTGGAGATGTTGGT----GATG-TGGGCGTTCCACT-TG-AGGTCTTCGGA---TA--TTGTGANTCCNAGGTATGGGTTNTCTTG--NACCTGTTGTAGTATAGT-T-TTG-TCGANTTCGTAGAANTGTGA
finalCons : TCTGGATCTGGAT------AAGTACGTTGT--AGAGACC--TCT--CGGC--ATATGCACAACGGAAAGGAGGTCTGGG---AAACGCTGATTAGTCCCAAT---GAAAGACGGC-CGATTTA--AAG-----CCGTTGACTGTATCTGCGCACACAACACTATC-TTCCAGTTGGTTCCAGTC-TATAATAGTTTTTGGAAAGNAAGAGT-TCTGG-AAT--GAGGC-GCTTTT-GCACTGCACTAGTT-TAAAGCAT----T---TGCTGTTATTTAANGAA-T---GTTTTTCAATAATG-TTG-TCTGATTTGCAGTC----TANGAATTT--C-CTGGC--TTTAATT--------TGGCGTTTGCCGCGGACA-GGGG--TTA---AGTAGTCAAGACATTGCATAGCTGGCACCAGCCCCTCGACCACCTTATAGAAGAAGGATAACCTCT-GTG--CTTTCCTTCGG--------TCTTGAAGGGGTGGTAACTGTAAGTCGTTCATCATA-CGTGTGACGCTACCTGGGTCCCGT---GACTTGTAGTCTCCTGTGACGAAGCGGACGGCTCGGCGCTGTACTTTTTCTAG--TGTAAAGATGTCCT-TTTGTNGGTAAGGATCCCAGAC-GATG--GAACCGTATTCNAGNGTTGATCTAACTAGCGACAG-------GTACGCTATT-T-TCCTGCATGA----T--GGT-----GGGCAGTGCCTTAGGTTCCTTCTGAGGAAGCCA--ANGGTCGAGTTGGCTTTCTTGGAGATGTTGGT----GATG-TGGGCGTTCCACT-TG-AGGTCTTCGGATA-----TTGTGANTCCNAGGTATGGGTTNTCTTGT--ACCTGTTGTAGTATAGT-T-TTG-TCGANTTCGTAGAANTGTGA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AGTTGACACAGTCAGGGAGGTCGTTTATGTGGCATAGGGACATAATTGATCTTAATACAGTGTCTTAAGGTACTCCAAAGTCCACCATGGTTCAATTTGATTGTT
Alignments
lowQualScore : 111111 1 111 111 111 111111 1111 111 1111 111 1111 1111 22222222 111111 11111111111 1 1 111 11111111111 1 111111 1111111 111 111 1
lowQualScore : 999999 2 99 5 99 99 99 222 1 111 0 3 2 000 5 77 555555 0 1 5 0 0 0 5 0 1 22 1 5 5 77 5 5 0 5 2222 000 0000 6 000 5 00 7777 9999 2222 3 4444 77 00000000 3 0 1 1 5 0 222222 4 4 5 2 6 99 66666666666 0 22 1 3 1 2 1 111 0 1 2 1 77 2 1 5 11 0 55 66 3 1 11 4 88888888888 0 0 5 5 2 9999 66 555555 0 2 1 1 44 1 2 1 0 9999 4 3 2 4 77 22 4 0000000 666 1 0 1 0 999 0 777 0 2 1 4 1
lowQualScore : ...... . .. . .. .. .. ... . ... . . . ... . .. ...... . . . . . . . . . .. . . . .. . . . . .... ... .... . ... . .. .... .... .... . .... .. ........ . . . . . . ...... . . . . . .. ........... . .. . . . . . ... . . . . .. . . . .. . .. .. . . .. . ........... . . . . . .... .. ...... . . . . .. . . . . .... . . . . .. .. . ....... ... . . . . ... . ... . . . . .
lowQualScore : 222222 5 22 5 22 22 22 222 0 777 7 5 5 000 7 99 999999 3 6 7 4 7 7 7 1 7 11 0 7 7 99 7 7 7 7 1111 000 1111 6 000 0 66 6666 4444 1111 0 0000 99 77777777 0 7 7 4 7 7 666666 3 3 3 5 7 22 77777777777 3 11 4 3 3 5 0 777 7 4 2 6 99 4 4 0 99 2 22 99 9 0 11 2 44444444444 2 0 0 0 2 4444 11 000000 8 2 1 4 99 1 0 1 1 4444 4 9 9 4 11 88 2 6666666 666 0 4 0 1 111 2 000 0 5 0 2 0
consensus : TCTGGATCTGGAT------AAGTACGTTGT--AGAGACC--TCT--CGGC--ATATGCACAACGGAAAGGAGGTCTGGG---AAACGCTGATTAGTCCCAAT---GAAAGACGGC-CGATTTA--AA--G---CCGTTGACTGTATCTGCGCACACAACACTATC-TTCCAGTTGGTTCCAGTC-TATAATAGTTTTTGGAAAGNAAGAGT-TCTGG-AAT--GAGGC-GCTTTT-GCACTGCACTAGTT-TAAAGCAT----TTG---CTGTTATT---TAACGAAT---GTTTTTCAATAATGTT-GT-CTGANTTGCAGTC----TANGAATTT--C-CTGGC--TTTAATT--------TGGCGTTTGCCGCGGACA-GGGGTT----A-AGTAGTCAAGACATTGCATAGCTGGCACCAGCCCCTCGACCACCTTATAGAAGAAGGATAACCTCT-GTG--CTTTCCTT--CGG------TCTTGAAGGGGTGGTAACTGTAAGTCGTTCATCATA-CGTGTGACGCTACCTGGGTCCCGT---GACTTGTAGTCTCCTGTGACGAAGCGGACGGCTCGGCGCTGTACTTTCTCTAG--TGTNAAGATGTCCT-TTTGTNGGTAAGGATCCCAGAC-GATG--GAACCGTATTCNAGNGTTGATCTAACTAGCGAC-AG------GTACGCTATT-T-TCCTGCATGA----T--GGT-----GGGCAGTGCCTTAGGTTCCTTCTGAGGAAGCCAANNGTCGAGTTGGCTTTCTTGGAGATGTTGGT----GATG-TGGGCGTTCCACT-TG-AGGTCTTCGGA---TA--TTGTGANTCCNAGGTATGGGTTNTCTTG--NACCTGTTGTAGTATAGT-T-TTG-TCGANTTCGTAGAANTGTGA
Reference ( family-619 ) : TCTGGATCTGGAT------AAGTACGTTGT--AGAGACC--TCT--CGGC--ATATGCACAACGGAAAGGAGGTCTGGG---AAACGCTGATTAGTCCCAAT---GAAAGACGGC-CGATTTA--AA--G---CCGTTGACTGTATCTGCGCACACAACACTATC-TTCCAGTTGGTTCCAGTC-TATAATAGTTTTTGGAAAGNAAGAGT-TCTGG-AAT--GAGGC-GCTTTT-GCACTGCACTAGTT-TAAAGCAT----TTG---CTGTTATT---TAANGAAT---GTTTTTCAATAATGTT-GT-CTGATTTGCAGTC----TANGAATTT--C-CTGGC--TTTAATT--------TGGCGTTTGCCGCGGACA-GGGGTT----A-AGTAGTCAAGACATTGCATAGCTGGCACCAGCCCCTCGACCACCTTATAGAAGAAGGATAACCTCT-GTG--CTTTCCTT--CGG------TCTTGAAGGGGTGGTAACTGTAAGTCGTTCATCATA-CGTGTGACGCTACCTGGGTCCCGT---GACTTGTAGTCTCCTGTGACGAAGCGGACGGCTCGGCGCTGTACTTTTTCTAG--TGTAAAGATGTCCT-TTTGTNGGTAAGGATCCCAGAC-GATG--GAACCGTATTCNAGNGTTGATCTAACTAGCGAC-AG------GTACGCTATT-T-TCCTGCATGA----T--GGT-----GGGCAGTGCCTTAGGTTCCTTCTGAGGAAGCCAANGGTCGAGTTGGCTTTCTTGGAGATGTTGGT----GATG-TGGGCGTTCCACT-TG-AGGTCTTCGGA---TA--TTGTGANTCCNAGGTATGGGTTNTCTTG--TACCTGTTGTAGTATAGT-T-TTG-TCGANTTCGTAGAANTGTGA
gi|1 : TCTGAATCTTAAT------AA-TACGTCGT--AGTGACCGATAC--TGGC--TTTTACACGACGGG--GGAG---TGAGCTTAATCGCTC-TTGG-------------ACACTGC-TGATTTG--AAT-GATTCTATTGACT----TTGAGTTAACTATACTGTCACTGC-GTTTATTCAAGTCGTACA-CAGATCTGACAAAATATGAATATCTG---AT--GTTTCCACTTTTTGTACTG-A-TAGTCATAAAGCAC----TTG---CTGTTGTT-----ACAAATAGAGTTCTCCA-CAATGTTTGT-TTGAAC-GTAGTT----TAAACATTG--T-TTAGC--CCTGATTGTTCTCTTTGG--TTT-CTGTGT-C------TT----T-AGTGTTCAA--TATTG-ATGGCTGGTACGTGCCCTTCCACTATCTTATACAAGAA------CATCA-GT----TGTTGTTGACGGCGTCTCTCCTGCAGGGGTTGTAACTG-GAG--------CATGTCG-ATGACGCATCCT---TCCTGTTGGGACCTGTAATCGCCTGTGATGAATCTGGCAGCAGATCTCTGGATTCTCTCCAGACGGTCAA--TGTCAT-CCTTCTGGTAAGGGTGCCAGAC-GATG--CTTCCGTACTCAAGTTTGGGGCGAACGAGGGCCTAG------GTGCGCGTTC-T-TCCTGAATGA----T--TTT-----GGGCAGTGCCTGAGGTTTCTTCGTAAGAATCCTAATGTTGAGTTGGCACGTTTGCAGGTGTTGTT----TATG-TGGATTTTCCATT-TG-AGGTCTTCTGATTGTA--TTATG---CCGAGCTATGGG--CTCTAGA-AACTTGCTTTAGTATATG-G-TTG-TCGATATTGTAGAAGTG
gi|10 : tGATGTCAC-TTTACAGGTAAGGGTGTCAGAT-GGTG--CATCCATATTCCAGCTTGGATCTGATGAGTGCT-AT------GTAGGC-ATTCT-TTTTACA-GACCTTT--AGT--------CATTGCCTGAGGTTTTGTCGGAGGAATCCTTATGTAGAGTTGGCTCATTTGACTATGTTGTT----GATG-TGAGTTTTCCACT-TC-AGGTCATCTGA---TA--TAGTGATTCCCAGGTATGGGTTATCCTG--AATTTGTTgcttgttttgtttctggtactgagagagtagcatttcctggagttaaatttcattccctattctttggcccagagtttaggttgtcgagatctttctgtagttagaatggtcgtttatggagttgatggcgcgatataacaggcagtcgtcggcaaaaaggcggatctgtgactttacccggtctgggtggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcaacctgacgggatctctcaccttccactatgacactcatctttcgttgcttgagaaagtt
gi|11 : gatctctggacacgttctaacttgtcTTTCCTT--CGG------TCTTGAAGGGGTGGTAATTGTAAATCATTCATCATA-CATGTGACGCTACCTTGGTCCCGT---GACTTGTAGTCTCTTGTGACGAAGCGGACGGCTTGGCGCTGTACTTTCTCTAG--TGTAAAGATGTCCT-TTTGTTAGTAAGGATCCCAGAC-GATG--GAACAGTATTATAGGGTTGCTATAACTTGTGAC-AG------GTATGCCATT-T-TCCTGCAAGA----T--GGtaaggatcacatcattgatagtgcat
gi|12 : CTGTACCTTTTCTAG--TATAAAGATGCCCT-TTTGTTGATAAGGATCCCAGAC-AATA--GAACAGTACCCTAGGGTTGATCTGGCTTGTGAA-AG------GTACGTTATT-T-TCCTGCATGA----T--TGTGGACAGGACAGTGTTTCAAGTTTCTTCTAAGGAAACCAATGGTCGAGTTTGCTTTTTTGGAGATCTTGGT----GACG-TGGGCGCTCCACT-TA-AGGTATTCAGA---TT--TTG
gi|13 : CTGTAACCAAGCGTGCTCCACGGCGCTGAACTTTTTCTAG--TGCTGAGATGTCCTGTTTGTAGG-AGAGATTCCAGACAGATGATGAA---TATTCGAGATGTGGTCGGACTcc
gi|14 : CATAA----T--GGT-----TGGCAATGTCGCATGA-CCTTCTAAGAAAGTCAATGGTCAAGTTTGCTT-CTTGAAGATCTTGGT----GATA-TGGTCGTTTCACT-TA-AGGTATTta
gi|16 : gattCCAAGTATTGAGTTGGCACTCTTTGTTATGTTAGT----GATG-T-GGTTTTCCATG-TG-A-GTTGTCAGA---AA--ATGTGATATCAAGG-ATGGATTGTCTTG--TACCTGCTgatg
gi|17 : cTCTGGCTCTGGAT------AATTACGTTGA--AGA-ACC--TCT--CGTCATATATGCACAGCGGAt
gi|2 : aT---GAAACTCGACACGGTTCAGTAACTG---TCATTAACTGTATCTGTGCCTACAACACTATT-TTTCAGT----------C-TATAATAGTTTTTCAGAAGAAAGAGT-TCTGG-AAT--GAGGC-ACTTTT-GCACTGCACTTGTT-TAAAGCATACATTTG---CTGTTATT---TTATGGAT---GTTTTTCAATAATGTT-AT-CTGATTTACAGTC----TATGAATTT--TTCTGAC--TTTGATT--------TGGCTTTTGTCATGGATA-GCGGTT----A-AGAAGTCAAGACATTGCACAGCTGGCACCAGCCTCTAGACCACCTTATAGAA---GGATAACCACC-AAG--CTTTCCTT--CTG------TCTTGAAGGGGTGATAATTGTAGGTTGTTTATCATA-CGGGTAACTCTACTTGGGTATGTT---GTTTTGTAGTCTCCTGTGATGAAGTGGACAGCTTGACACTGTATTTTTTCAAA--TAAGACAATGTCCT-TTTGTAGATAAGGATCCCAGAT-GATA--AAACAGTATTCTAGGGTTGAGCTAACTAGCA---AG------GTACACTATT-T-TCCAGCATGA----T--GGT-----GGGCAGTGTTTTTAGTTCTTTCTAAGGAAGCCAAAGGTCGAGTTTGCTTTCTTGGAGATATTAGT----GATG-TTGGCGCTCCACT-TA-AGGTCTTCAGA---TA--TTGTCTCTCCCAGATAGGGGTTTTC-TGAAAACTTGTTGTAGTATGGT-T-TTG-TTGAGTTTGTAGAATTGTGA
gi|3 : TCTGGATCTGGAT------AAGTACGTTGT--AGAG-CC--TCT--CGGC--ATATGCACAACGGAAAGAAGGTCTGGG---AAACACTGATTAGTCCCATT---GAAAGACGGC-CGATTTA--AA--G---CCGTTGACTATATTTGCGCACACAACACTATC-TTCCAGTTGGTTCCAGTC-TATAATAGTTTTTAAAAAGTAAGAGT-TCTGG-AAT--AAGAT-GCTTTT-GCACTGCACTAATT-TAAAGCAT----TTG---CTGTTATT---TAAAGAAT---GTTTTTCAATAATATT-GT-CTGATTTGCAGCC----TAGGAATTT--C-CTGGC--TTTAATT--------TGGCGCTTGCCGCGGACA-GGGGTT----A-AATAGTCAAGACATTGCATAGCTGGCACCAGTCCCTCGACCACCTTATAGAAAAAGGATAACCTCT-GTG--CTTTCCTA--CGG------TCTTGGAGGGGTGGTAATTGTAAGTCGTTCATCATA-CGTGTGACGCTACCTGGGTCCCGT---GACTTGTAGTCTCCTGTGATGAAGCGGACGGCTTGGCGCTGTACTTTCTCTAG--TGTAAAGATGTCCT-TTTGTTGGTAAGGATCCCAGAC-GATG--GAACAGTATTCTAGGGTTGATCTTACTAGTGAC-AG------GTATGCCATT-T-TTCTGCATGA----T--GGT-----GGACAGTGTTTTAGGTTCCTTCTAAGGAAGCCAATGGTCGAGTTTGCTTTTTTGGAGATCTTGGT----GATG-TGAGCGCTCCACT-TA-AGGTCTTCGGA---TA--TTGTCACTCCAAGATATGGGTTTACTGG--TACTTGTTGTAGTATAGT-T-TTG-TCTAGTTCATAGAAATGTGAtgatttgctgttcatgctgattaaatttaaaacgcaaaccccatgtattagcccatttctcttgttcttgcaagtcctgttggagggcgatgtggtcttctgtgcttttggcgactccatgaagtagacaatc
gi|4 : TCGGTGTTGGTTCCTTTCTAG--TTTGTCTATATCCC-TTTA-ATGTATGGGTTCCAGA----TG--GCGCCATATTCCATCACTGATCTAACTAGGGAT-ATATAAATGTAACCTGTT-T-TTCGGCATGG----TTCGG------GGAC-GTTCCGTAAATTTCTCCCGAGAAAGCCTAGTGTTGTATTGGATTTGCTGCATATGTTGTTTATAAATA-TGTATATTGCATT-TTCAGGTTGTTGAA---AAATTTG-GAGTCCTATATATGGGTTGTCTTG--GACCTGTTGTAGTATAATATGTTGTTCTATTTGGTAGAACTTTGA
gi|5 : ctgtaatcattttttatgtacccgattgaCGTATTCAAATGTGGACCGAATGAGCGTT-AT------GTACAC-ATT-CATCTTGCAAGC----T--GTT-----TGGTAGTGCCTTATGCTCCTCCTGAGAAACCCAAGCGTTGAGATGGCCGTCTATGTCATGTTGGT----GATAAT---CTTTTTAATGTG-ATGTTGTCAGA---AA--ATGTGAAACCAGAGTATGGGTTTGCTTG--TACCTGTtgattgtttgttaattgattatgttgcatatttttgtgttaaatctcataccccatttattagcccagttttcatctgcttgtagtatatggtgttctttctcctttttaatgattctgtaaagtaagcagtcgtctgtaaataggcagacagctgatttgacgctgtcaggaagataattcatatggcaaaggaacataattggtcttaatacagtgccttggggaactccagagtccacactggttccaactgattgtt
gi|6 : ataatgctagTCTGGATCTTGAT------TAGTACGTTGA--AGTGACC--ACTGCTGGC--TTTAACCCAATGGGAAGGAA---TG--------CGC--ATTAGTCC-AATTTTGTTAGTAG---TGACTTC--AA--A---CACTCGATGGAGTCAGCTTCCACTAAATTGTC-ACTAAGTTTGTTCCCATC-TATGGCAGTTTTCACAAAGAATGTGT-TCTTGTAATTCAATGT-GTTTGT-GAAT---ATTGGTT-TAAAGCAC----TTGGTGCTGTTATTGTTCAA--ACT---GTTTTCCA-CAATATT-TTTCTGAAT-AAAGTCCTTGTACTGCTTTGCC-CTGACAGTTCATTT--------TGGTCTT----------A-GTGGTTTTAGATAGTGGTCAA--TGTTG-ATGGCCGGTACGTGCCCTTTCACCACCTTGTACAGCAACGTTAGCCTCTGGTGGAGTTGTCTT-----------TCCTGTAGTGGTGGTAGCTCTAGGTCCCTCAGGATGTCG-GAGGCACTTCCTGCTTCCAGG---GATCTGTAGTCTTTTGTTATGAAGTGctggggatctgatcgtcgatggtattgaaattgctgccctgatttctggtgatattaaaggtaatacttttttaatagaattttatttcccaattgttcgcccattgttgaatatcaacttggagaatttggtattcacgaaactatttgatatggtattgaaaaggcagtcatttgcaaagagaggtgtctgcgacttagtcttatctggtaggttgttaatgtgccacaagaacaataggggaccgagaatgctaccttgggatactccaaatacaacatctacttggcggaacttcgcaccttccgctattaccgtacatttcccaatgtgtcaggaagttg
gi|7 : ACAATGGAAAGGAGGTATGGG---AAACATTGATTAGTCCCAAT---GAAAGACGGC-CATTTTA--AA--G---CCGTTAACTGCATCTGCGCATACAACACTATC-CTTCAGTTGGCAAAAGTC-TATAATAGTTTTTGGAAAGAAATAGT-TCTGG-AAT--GAGGC-ACTTTT-GTACTGCACTAGTT-TAAAGCAT----TTG---CTGTTATT---TATTGAAC---GTTTTTCAATAACGTT-AT-CTGACTTACATTC----TATGAATTT--G-CTGGC--TTTAATT--------TGGCGTTTGTCTAGGATA-AGGGTT----A-AGTAGTCAAGACACTGCATAGCTGGCACCAGCACCTCGATCACCTTATAGAAGAAGGATAACCTCT-GTG--CTTTCCTT--TGG------TCTTGAATGGGTGGTAACT-------GTTCATCATA-CGTGTGACGATACATGGGTACCGT----ACT
gi|8 : TCTGGATCTGGATCATGATAAGTACGTTGT--AGAG-CC--TCT--CGGC--ATATGCACAACGGAAAAGAGGGCTGGG---AAACACTGTTTAATCCCAAT---GAATGACGGC-CGATTTC--AA--G---CCGTTAACTGTATCTGCGCACACAACACTATC-TTCTAGTTGGTTCCAGTC-TATAATAGTTTTTGGAAAGTAAGAGT-TCTGA-AAT--AAGGC-ACTTTT-GCAGTGCACTAGTT-CGAAACAT----TTG---CTGTTATT---TAATGAAT---GTCT----ATAA------------------------------ATTT--T-CTGGC--TTTAATT--------TGGCATTTGCCGCGGACA-GGGGTT----A-AATAGTCAAGACATTGCATAGCTGGCACCAGCCCCCCGACCACCTTATAGAAGAAGGATAA---CT-GTG--CTTTCCTT--TGG------TCTTGAAGGGGTGGTCATTGTAAGTCGTTCATgttttttg
gi|9 : aTCTGAATCTGGAT------AAGTACGTTGTGTAGAG-CC--TCT--CGGC--ATATGCACAACGGAAAGAAGGTCTGGG---AAACACTGATTAGTCCCAAT---GAAAGACGGC-CGATTTA--AA--G---CCGTTGACTGTATTTGCGCACACAACACTATC-TTCCAGTTGGTTCCAGTC-TATAATAG-TTTTGGAAAGTAAGAAT-TCTGG-AAT--GAGAT-GCTTTT-GCACTGCACTAATT-TAAAGCAT----TTG---CCGTTATT---TAAAGAAT---GTTTTTCAATAATATT-GT-CTGATTTGCAGCC----TAAGAATTT--C-CTGGC--TTTAATT--------TGGCGCTTGCCGCAGACAGGGGGTT----A-AATAGTCAAGACATTGCATAGCTGGCACCAGCCCCTCGACCACTTTATAGAAAAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AGTTGACACAGTCAGGGAGGTCGTTTATGTGGCATAGGGACATAATTGATCTTAATACAGTGTCTTAAGGTACTCCAAAGTCCACCATGGTTCAATTTGATTGTT