lowQualScore : 1111111111 111111111
lowQualScore : 11 11 44 2 0000000000 444444444 1 66666 22 4
lowQualScore : .. .. .. . .......... ......... . ..... .. .
lowQualScore : 77 33 99 3 3333333333 555555555 1 44444 33 8
consensus : CGAGGGTTCAGCGCAACACTGC-TCTATC-T-ACATATA----AACANATA-A--N--G-AAA-TA---G-A-GCAGTGTTGCGTTGAACC
Reference ( gi|20 ) : CGAGGGTTCAGCGCAACACTGT-TCTATT-T-ACATATA----AACATATA-A--T--G-AAA-TA---A-A-ACAGTGTTGCGTTGGACC
gi|12 : CGAGGATTATGTGCAACATTGT-TCTATC-T-ATATATA----AACATATA-A--A--G-AAA-TA---G-A-TCAGTGTTGCATTGAACC
gi|18 : atCAAGTGTTTAGTGCATCACTGT-TCTATC-T-ACATATA----AACAGATA-A--C--G-AAT-TA---A-A-GCAGTGGTGCATTGAACCg
gi|11 : CAAGGGTTCAGCACAACACTGT-TCTATC-T-CTTCATG----AACAAATA-A-----G-GAA-TA---T-A-GCAGTGTTGCGTTGAACCa
gi|10 : aatCAAGTGTTAAGTGCATCACTGT-TCTATC-T-GCATATA----AACAGATA-A--C--G-AAT-TA---A-A-GCAGTGGTGCATTGAACCa
gi|25 : tCGAGGGTTAAGCGCAACACAGT-CCTACC-T-GCATTTA----AAAAAATA-A--A--G-GAA-TA---G-A-ACAGTGTTGCGTTGAatc
gi|27 : CGAGGATTCAGCACAACACTGT-TCTATC-T-ACATA-A----AACATATA-A--A--C-AAA-TATGGA-A-ATAGTGTAGTGT
gi|14 : tCGAGTATTCAGTGCAACACTAT-TCTATC-T-ACATGTA----AACAAATA-A--G--G-AAA-TA---G-A-GGAGTGTTGGATTGA
gi|9 : tttCAAGGGTTCAGTGCAACACTGT-TCTATC-T-ACAAAT-----AACAAATA-A-----G-GTA-TA---ATA-GTAGTGCTGTGCTAAACCt
gi|39 : tatCGATGATTCAATGCAATACTGC-TCTATT-T-at
gi|23 : aatcaaattaggGAGGGTTCAGCACAA-ACTGA-TCTATC-T-ACTTATA----AACAAATA-A--G--G-AAA-TA---G-A-GCAGTGTTGaattat
gi|17 : caGAGGGTTCAGCACAA-ACTGA-TCTATC-A-ACTTATG----AACAAATA-A--G--G-AAA-TA---G-A-GCAGTGTTGTATTAAATCtagtaaac
gi|36 : aGAGGGTTCAACACAACACTGT-TCTATC-T-ACATATA----AACAAATA-A--at
gi|30 : GATGGTTAAGCGCAATACTGT-TCTACC-T-GCATAT------ACAAAAA-A--A--G-AAA-TA---G-A-GCAGTGTTGggtgttgcatc
gi|1 : taGAAGGTTCCATGTAACAATGG-TCTATC-T-ACATATA----AACAAATT-A--G--G-AAA-TA---G-A-GCAGTGCAGCATTag
gi|35 : caaaaaattGATGGTTCAACGCAACACTGC-TCTATT-T-CCTTTT------TTATAT--A--T--GCAGG-TA---G-A-ACAGTaaagcatcaa
gi|37 : GATGGTCCAACGCAACACTGC-TGTATC-T-TCTTGT---------T-------T--G---A-TA---G-A-ACAGTGTTGCG
gi|34 : GACGGTTCAATGCAACAGTGC-TCTATT-TCACTTAT
gi|19 : atggttctctctgtataaaacaaAGGGTTCAGTGCAACACTGT-CCTTAC-T-ACATGTA----AACAAATA----T--G-AAAATA---G-A-GCAGTGTTGCGTCAGACCa
gi|31 : aaAGGGTTCAGAGCAACACTAT-TTTATC-T-ACATACA----AACAAATA-A--G--G-AAA-TA---G-A-TCAGTGTTG
gi|12 : atGGTTCAATGCAACACTGA-TCTATT-T-CTTTATA----TGTTTATATA--T----AGA-TA---G-A-ACAATGTTGC
gi|11 : atcgaggattatgtGGTTCAACGCAACACTGC-TATATT-C--CTTATT----TGTTCATG-A--A--G-AGA-TA---G-A-ACAGTGTTGTGCTGAACCg
gi|19 : aatcaagGGTCTGACGCAACACTGC-TCTATT-T-TCATATT------TGTTTACA--T--G-TAG-TA---A-GGACAGTGTTGCACTGAACCa
gi|17 : aaagGATTTAATACAACACTGC-TCTATT-T-CCTTATT----TGTTCATA-AGTT--G---A-TA---G-A-TCAGT-TTGTGCTGAACC
gi|9 : agagGGTTTAGCACAGCACTA---CTATTAT-ACCT-TA------TTTGTT-A--TTTGTAGA-TA---G-A-ACAGTGTTGCACTGAACCat
gi|28 : tatcaagGGTTCAATGCAACACTGT-CCTAAC-T-ACATATG----AACAAATA-A--G--A-AAA-TA---G-A-GCAGTGACGCATTGAat
gi|32 : aGGTTCAACGCAACACTGC-TCCATT-T--CTT---------CATATG-T--T--T-ATA--A---A-A-ACAATATTGCGCTG
gi|41 : aataGGTTCAACACAACACTGC-TCTATT-T-g
gi|29 : catataaacaaatgaggGTTCAGCACAACACTGT-TCTATC-T-ACATATA----AACAAATA-T--G--G-AAA-TA---C-A-GCAGTGTTCCATTGAACata
gi|29 : GTTCAATGGAACACTGC-TGTATT-T-CCATATT----TGTTTATA----T--GTAGA-TA---G-A-ACAGTGTTGTGCTGAAC
gi|23 : GTTTACTACAACACTGC-TCTATT-T-CCTTATT----TGTTTATA-A--G--T-AGA-TA---G-A-TCAGT-TTGTGCTGAACC
gi|3 : cagagGTTCAGAGAAACACTGC-TTTATC-T-ACATATA----ACAAGACA-A--A--A-ACA-TA---A-A-ACAGTGTTGTGTTG
gi|14 : aatttatcgtctgattTTCAATCCAACACTCC-TCTATT-T-CCTTATT------TGTTTACA--T--GTAGA-TA---G-A-ATAGTGTTGCACTGAac
gi|28 : tttcgagtaTTCAATGCGTCACTGC-TCTATT-T-TCTTATTTGTTCATATGTA-G--T--------TA---G-G-ACAGTGTTGCATTGAACCt
gi|32 : aCAGCGCAATATTGT-TTT---------TATA----AACATATG-A--A--G-AAA-TG---G-A-GCAGTGTTGCGTTGAACC
gi|6 : aataGTGCAATATTGT-GCTATC-A-ATGTATA----AACAAATA-A--G--G-AAA-CA---A-A-GCAGTGTTGCGTTg
gi|37 : gtgaatcgaaatttcagtgcCGCAACACTGT-TCTATC---------A----AACA-----A--G--A-AGA-TA---C-A-GCAGTGTTGCGTTGGACCaaa
gi|36 : GCAACACCTTATTTGTT-T-ATATGTA----GA-------------------TA---G-A-ACAGTGTTGTGTTGAACCatc
gi|31 : gagCAACACTGA-TCTATT-T-CCTTATT----TGTTTGTA----T--GTAGA-TA---A-A-ATAGTGTTGCTCTGAACCatc
gi|35 : atagACTGT-TCTACC-T-GCATATAT---AAAA---A-A--G--G-AAA-TA---G-A-GCAGTGTTGCGTTGAACC
gi|34 : GT-TCTCTC-T-GTATA-A----AACAAATA-AG-T--G-AAA-TA---G-A-GCACTGTTGCATTGAACCatc
gi|40 : atgTC-T-GCATATA----AACAAATA-A--G--G-ATA-TA---T-G-GCAGTGTTGCGTTGAACCgtca
gi|41 : CATATA----AACAAATG-A--G--G-AAA-TA---G-A-GCAGTGTTGTGTTGAACCt
14 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|2 ): ATCGAGATCGTAATGCAAAATTATCCTTATTTAATATAGACTAGAAAGTTAGATAGACTAGTTTTTACTCCAAACCTTCAAT
Unaligned ( gi|4 ): ATCGAGGACATAGTGCAAACCAATATAGATAAGGACGTGAGATAGACTAGTTTTTCACCAAAACACCTCGATATATCAAT
Unaligned ( gi|5 ): GAGGGCTTACTTCAAAACTAGTCTTATTCAATAAAAACAAAAAAGGCAGATAGACTTTAAGTTTGAACTAAGTCTTTGAT
Unaligned ( gi|7 ): TGAATGTTTAATGCAAAACCAGTCTAACTCAATACAGATTAAGGAAGTAGACAGCTTAATGTAGCGATAATCACTCAA
Unaligned ( gi|8 ): GAGCACTTAGTGCTAAACTAGTCTAGCTCAATAAACACTAAGGAGGTAGGTAAGTAGTTTTGCACTAGGGACCTCTG
Unaligned ( gi|13 ): AGGGCCTAATTCAAAATTAGTCTAACTCAATACAGATTAAGAAGGAAGATAGACTAGTCTGCGCTAAGCTCTCG
Unaligned ( gi|15 ): AGGGCCTAATTCAAAATTAGTCTAACTCAATACAGATTAAGAAGGAAGATAGACTAGTCTGCGCTAAGCTCTC
Unaligned ( gi|16 ): GGTCTTGGTGCAAAACTAATGGAATGCAACATGGACAGAGAAGGTTAAGAGACTAGTTTTGCACTAAGTCCTA
Unaligned ( gi|21 ): ATCATTTGATGTAAAAAAAGTGTAACTTAATATAGTCCAAGAAGGAAGATAGACTAGTTTTCCGATAAGTCT
Unaligned ( gi|22 ): GATTTAGTGCAAAACTTTTCTAACTCGAAATGGACTAAGAAGGTAGATAGACTGGTTTTGCACTGAGCCCT
Unaligned ( gi|24 ): ACTTACTGCAAACCTAGCCCAACTCCATTTAGACTAAGAAGTTACATAGACTAGTTTTGCACCGAGCCTT
Unaligned ( gi|26 ): CAGTGCAAATCTGGTCTAACTCAATATAGATGAGAAAGGTGTACAGACTAGTTATGCGCTAAGTCCTTC
Unaligned ( gi|33 ): AAAGCTTGTGTAACTCAATATATACAAAGAAGGTAGATAGACTAGTTTGGCATTAAGAC
Unaligned ( gi|38 ): AAAACTAGCATAACTCAATAAAGACAAAGAAGTTAGATAGACCAGTTTTGCA
Alignments
lowQualScore : 6 5555555 2 22 1 1
lowQualScore : . ....... . .. . .
lowQualScore : 8 0000000 4 55 5 5
consensus : CGAGGGTTCAGCGCAACACTGTTCTATCT-------ACATATAAACAAATAAG-G-A-AATAGAGCAGTGTTGCGTTGAACC
Reference ( family-328 ) : CGAGGGTTCAGCGCAACACTGCTCTATCT-------ACATATAAACANATAAN-G-A-AATAGAGCAGTGTTGCGTTGAACC
gi|1 : GAAGGTTCCATGTAACAATGGTCTATCT-------ACATATAAACAAATTAG-G-A-AATAGAGCAGTGCAGCATTAAA
gi|10 : caaaaaattCAAGTGTTAAGTGCATCACTGTTCTATCT-------GCATATAAACAGATAAC-G-A-ATTAAAGCAGTGGTGCATTGAACCgcatcaa
gi|11 : tCAAGGGTTCAGCACAACACTGTTCTATCT-------CTTCATGAACAAATAAG-G---AATATAGCAGTGTTGCGTTGAACCatc
gi|12 : aatCGAGGATTATGTGCAACATTGTTCTATCT-------ATATATAAACATATAAA-G-A-AATAGATCAGTGTTGCATTGAACCa
gi|14 : atCGAGTATTCAGTGCAACACTATTCTATCT-------ACATGTAAACAAATAAG-G-A-AATAGAGGAGTGTTGGATTGAAg
gi|17 : tttGAGGGTTCAGCACAA-ACTGATCTATCA-------ACTTATGAACAAATAAG-G-A-AATAGAGCAGTGTTGTATTAAATCt
gi|18 : aCAAGTGTTTAGTGCATCACTGTTCTATCT-------ACATATAAACAGATAAC-G-A-ATTAAAGCAGTGGTGCATTGAACCat
gi|19 : AGGGTTCAGTGCAACACTGTCCTTACT-------ACATGTAAACAAATATG-A-A-AATAGAGCAGTGTTGCGTCAGACCa
gi|20 : aaCGAGGGTTCAGCGCAACACTGTTCTATTT-------ACATATAAACATATAAT-G-A-AATAAAACAGTGTTGCGTTGGACC
gi|22 : AGGGCTCAGTGCAAAACCAGTCTATCT-------AC
gi|23 : gatttagtgcaaaacttttctaactcgaaatggactaagaagGAGGGTTCAGCACAA-ACTGATCTATCT-------ACTTATAAACAAATAAG-G-A-AATAGAGCAGTGTTGTAGTAAAC
gi|25 : caCGAGGGTTAAGCGCAACACAGTCCTACCT-------GCATTTAAAAAAATAAA-G-G-AATAGAACAGTGTTGCGTTGAA
gi|27 : CGAGGATTCAGCACAACACTGTTCTATCTACATAAAACATATAAACAAATATG-G-A-AATAGTGTAGTGT
gi|28 : tGGTTCAATGCAACACTGTCCTAACT-------ACATATGAACAAATAAG-A-A-AATAGAGCAGTGACGCATTGAA
gi|29 : aGTTCAGCACAACACTGTTCTATCT-------ACATATAAACAAATATG-G-A-AATACAGCAGTGTTCCATTGAAC
gi|3 : GTTCAGAGAAACACTGCTTTATCT-------ACATATAACAAGACAAA-A-A-CATAAAACAGTGTTGTGTTGA
gi|30 : aatttatcgtctgattGATGGTTAAGCGCAATACTGTTCTACCT-------GCATAT--ACAAAAAAA-G-A-AATAGAGCAGTGTTGc
gi|31 : taAGGGTTCAGAGCAACACTATTTTATCT-------ACATACAAACAAATAAG-G-A-AATAGATCAGTGTTGag
gi|32 : atCAGCGCAATATTGTTTT--------------TATAAACATATGAA-G-A-AATGGAGCAGTGTTGCGTTGAACC
gi|34 : aataGTTCTCTCT-------GTATA-AAACAAATAAGTG-A-AATAGAGCACTGTTGCATTGAACCg
gi|35 : atgACTGTTCTACCT-------GCATATA--TAAAAAAG-G-A-AATAGAGCAGTGTTGCGTTGAACCgtca
gi|36 : GAGGGTTCAACACAACACTGTTCTATCT-------ACATATAAACAAATAAG-G-atc
gi|37 : CGCAACACTGTTCTATC--------------AAACA----AG-A-A-GATACAGCAGTGTTGCGTTGGACCtgttgcatc
gi|39 : AATCAAATTAG-G-A-AATAGAGCAGTATTGCATTGAATCatc
gi|40 : TCT-------GCATATAAACAAATAAG-G-A-TATATGGCAGTGTTGCGTTGAACCatcgaattat
gi|41 : CATATAAACAAATGAG-G-A-AATAGAGCAGTGTTGTGTTGAACCt
gi|6 : GTGCAATATTGTGCTATCA-------ATGTATAAACAAATAAG-G-A-AACAAAGCAGTGTTGCGTTAAAata
gi|9 : gtgaatcgaaatttcagtgcCAAGGGTTCAGTGCAACACTGTTCTATCT-------ACAAAT-AACAAATAAG-GTATAAT--AGTAGTGCTGTGCTAAACC
13 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): ATCGAGATCGTAATGCAAAATTATCCTTATTTAATATAGACTAGAAAGTTAGATAGACTAGTTTTTACTCCAAACCTTCAAT
Unaligned ( gi|4 ): ATCGAGGACATAGTGCAAACCAATATAGATAAGGACGTGAGATAGACTAGTTTTTCACCAAAACACCTCGATATATCAAT
Unaligned ( gi|5 ): GAGGGCTTACTTCAAAACTAGTCTTATTCAATAAAAACAAAAAAGGCAGATAGACTTTAAGTTTGAACTAAGTCTTTGAT
Unaligned ( gi|7 ): TGAATGTTTAATGCAAAACCAGTCTAACTCAATACAGATTAAGGAAGTAGACAGCTTAATGTAGCGATAATCACTCAA
Unaligned ( gi|8 ): GAGCACTTAGTGCTAAACTAGTCTAGCTCAATAAACACTAAGGAGGTAGGTAAGTAGTTTTGCACTAGGGACCTCTG
Unaligned ( gi|13 ): AGGGCCTAATTCAAAATTAGTCTAACTCAATACAGATTAAGAAGGAAGATAGACTAGTCTGCGCTAAGCTCTCG
Unaligned ( gi|15 ): AGGGCCTAATTCAAAATTAGTCTAACTCAATACAGATTAAGAAGGAAGATAGACTAGTCTGCGCTAAGCTCTC
Unaligned ( gi|16 ): GGTCTTGGTGCAAAACTAATGGAATGCAACATGGACAGAGAAGGTTAAGAGACTAGTTTTGCACTAAGTCCTA
Unaligned ( gi|21 ): ATCATTTGATGTAAAAAAAGTGTAACTTAATATAGTCCAAGAAGGAAGATAGACTAGTTTTCCGATAAGTCT
Unaligned ( gi|24 ): ACTTACTGCAAACCTAGCCCAACTCCATTTAGACTAAGAAGTTACATAGACTAGTTTTGCACCGAGCCTT
Unaligned ( gi|26 ): CAGTGCAAATCTGGTCTAACTCAATATAGATGAGAAAGGTGTACAGACTAGTTATGCGCTAAGTCCTTC
Unaligned ( gi|33 ): AAAGCTTGTGTAACTCAATATATACAAAGAAGGTAGATAGACTAGTTTGGCATTAAGAC
Unaligned ( gi|38 ): AAAACTAGCATAACTCAATAAAGACAAAGAAGTTAGATAGACCAGTTTTGCA
Alignments
lowQualScore : 5555555 1 1 1 1
lowQualScore : ....... . . . .
lowQualScore : 0000000 5 5 5 5
consensus : CGAGGGTTCAGCGCAACACTGTTCTATCT-------ACATATAAACAA-ATAAG-G-A-AATAGAGCAGTGTTGCGTTGAACC
Reference ( family-328 ) : CGAGGGTTCAGCGCAACACTGTTCTATCT-------ACATATAAACAA-ATAAG-G-A-AATAGAGCAGTGTTGCGTTGAACC
gi|1 : GAAGGTTCCATGTAACAATGGTCTATCT-------ACATATAAACAA-ATTAG-G-A-AATAGAGCAGTGCAGCATTAAA
gi|10 : caaaaaattCAAGTGTTAAGTGCATCACTGTTCTATCT-------GCATATAAACAG-ATAAC-G-A-ATTAAAGCAGTGGTGCATTGAACCgcatcaa
gi|11 : tCAAGGGTTCAGCACAACACTGTTCTATCT-------CTTCATGAACAA-ATAAG-G---AATATAGCAGTGTTGCGTTGAACCatc
gi|12 : aatCGAGGATTATGTGCAACATTGTTCTATCT-------ATATATAAACAT-ATAAA-G-A-AATAGATCAGTGTTGCATTGAACCa
gi|14 : atCGAGTATTCAGTGCAACACTATTCTATCT-------ACATGTAAACAA-ATAAG-G-A-AATAGAGGAGTGTTGGATTGAAg
gi|17 : tttGAGGGTTCAGCACAA-ACTGATCTATCA-------ACTTATGAACAA-ATAAG-G-A-AATAGAGCAGTGTTGTATTAAATCt
gi|18 : aCAAGTGTTTAGTGCATCACTGTTCTATCT-------ACATATAAACAG-ATAAC-G-A-ATTAAAGCAGTGGTGCATTGAACCat
gi|19 : AGGGTTCAGTGCAACACTGTCCTTACT-------ACATGTAAACAA-ATATG-A-A-AATAGAGCAGTGTTGCGTCAGACCa
gi|20 : aaCGAGGGTTCAGCGCAACACTGTTCTATTT-------ACATATAAACAT-ATAAT-G-A-AATAAAACAGTGTTGCGTTGGACC
gi|22 : AGGGCTCAGTGCAAAACCAGTCTATCT-------AC
gi|23 : gatttagtgcaaaacttttctaactcgaaatggactaagaagGAGGGTTCAGCACAA-ACTGATCTATCT-------ACTTATAAACAA-ATAAG-G-A-AATAGAGCAGTGTTGTAGTAAAC
gi|25 : caCGAGGGTTAAGCGCAACACAGTCCTACCT-------GCATTTAAAAAA-ATAAA-G-G-AATAGAACAGTGTTGCGTTGAA
gi|27 : CGAGGATTCAGCACAACACTGTTCTATCTACATAAAACATATAAACAA-ATATG-G-A-AATAGTGTAGTGT
gi|28 : tGGTTCAATGCAACACTGTCCTAACT-------ACATATGAACAA-ATAAG-A-A-AATAGAGCAGTGACGCATTGAA
gi|29 : aGTTCAGCACAACACTGTTCTATCT-------ACATATAAACAA-ATATG-G-A-AATACAGCAGTGTTCCATTGAAC
gi|3 : GTTCAGAGAAACACTGCTTTATCT-------ACATAT-AACAAGACAAA-A-A-CATAAAACAGTGTTGTGTTGA
gi|30 : aatttatcgtctgattGATGGTTAAGCGCAATACTGTTCTACCT-------GCATAT--ACAA-AAAAA-G-A-AATAGAGCAGTGTTGc
gi|31 : taAGGGTTCAGAGCAACACTATTTTATCT-------ACATACAAACAA-ATAAG-G-A-AATAGATCAGTGTTGag
gi|32 : atCAGCGCAATATTGTTTT--------------TATAAACAT-ATGAA-G-A-AATGGAGCAGTGTTGCGTTGAACC
gi|34 : aataGTTCTCTCT-------GTATA-AAACAA-ATAAGTG-A-AATAGAGCACTGTTGCATTGAACCg
gi|35 : atgACTGTTCTACCT-------GCATATA--TAA-AAAAG-G-A-AATAGAGCAGTGTTGCGTTGAACCgtca
gi|36 : GAGGGTTCAACACAACACTGTTCTATCT-------ACATATAAACAA-ATAAG-G-atc
gi|37 : CGCAACACTGTTCTATC------------------AA-ACAAG-A-A-GATACAGCAGTGTTGCGTTGGACCtgttgcatc
gi|39 : AATCAA-ATTAG-G-A-AATAGAGCAGTATTGCATTGAATCatc
gi|40 : TCT-------GCATATAAACAA-ATAAG-G-A-TATATGGCAGTGTTGCGTTGAACCatcgaattat
gi|41 : CATATAAACAA-ATGAG-G-A-AATAGAGCAGTGTTGTGTTGAACCt
gi|6 : GTGCAATATTGTGCTATCA-------ATGTATAAACAA-ATAAG-G-A-AACAAAGCAGTGTTGCGTTAAAata
gi|9 : gtgaatcgaaatttcagtgcCAAGGGTTCAGTGCAACACTGTTCTATCT-------ACAAAT-AACAA-ATAAG-GTATAAT--AGTAGTGCTGTGCTAAACC
13 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): ATCGAGATCGTAATGCAAAATTATCCTTATTTAATATAGACTAGAAAGTTAGATAGACTAGTTTTTACTCCAAACCTTCAAT
Unaligned ( gi|4 ): ATCGAGGACATAGTGCAAACCAATATAGATAAGGACGTGAGATAGACTAGTTTTTCACCAAAACACCTCGATATATCAAT
Unaligned ( gi|5 ): GAGGGCTTACTTCAAAACTAGTCTTATTCAATAAAAACAAAAAAGGCAGATAGACTTTAAGTTTGAACTAAGTCTTTGAT
Unaligned ( gi|7 ): TGAATGTTTAATGCAAAACCAGTCTAACTCAATACAGATTAAGGAAGTAGACAGCTTAATGTAGCGATAATCACTCAA
Unaligned ( gi|8 ): GAGCACTTAGTGCTAAACTAGTCTAGCTCAATAAACACTAAGGAGGTAGGTAAGTAGTTTTGCACTAGGGACCTCTG
Unaligned ( gi|13 ): AGGGCCTAATTCAAAATTAGTCTAACTCAATACAGATTAAGAAGGAAGATAGACTAGTCTGCGCTAAGCTCTCG
Unaligned ( gi|15 ): AGGGCCTAATTCAAAATTAGTCTAACTCAATACAGATTAAGAAGGAAGATAGACTAGTCTGCGCTAAGCTCTC
Unaligned ( gi|16 ): GGTCTTGGTGCAAAACTAATGGAATGCAACATGGACAGAGAAGGTTAAGAGACTAGTTTTGCACTAAGTCCTA
Unaligned ( gi|21 ): ATCATTTGATGTAAAAAAAGTGTAACTTAATATAGTCCAAGAAGGAAGATAGACTAGTTTTCCGATAAGTCT
Unaligned ( gi|24 ): ACTTACTGCAAACCTAGCCCAACTCCATTTAGACTAAGAAGTTACATAGACTAGTTTTGCACCGAGCCTT
Unaligned ( gi|26 ): CAGTGCAAATCTGGTCTAACTCAATATAGATGAGAAAGGTGTACAGACTAGTTATGCGCTAAGTCCTTC
Unaligned ( gi|33 ): AAAGCTTGTGTAACTCAATATATACAAAGAAGGTAGATAGACTAGTTTGGCATTAAGAC
Unaligned ( gi|38 ): AAAACTAGCATAACTCAATAAAGACAAAGAAGTTAGATAGACCAGTTTTGCA
Alignments
lowQualScore : 5555555 1 1 1 1
lowQualScore : ....... . . . .
lowQualScore : 0000000 5 5 5 5
consensus : CGAGGGTTCAGCGCAACACTGTTCTATCT-------ACATATAAACAA-ATAAG-G-A-AATAGAGCAGTGTTGCGTTGAACC
Reference ( family-328 ) : CGAGGGTTCAGCGCAACACTGTTCTATCT-------ACATATAAACAA-ATAAG-G-A-AATAGAGCAGTGTTGCGTTGAACC
gi|1 : GAAGGTTCCATGTAACAATGGTCTATCT-------ACATATAAACAA-ATTAG-G-A-AATAGAGCAGTGCAGCATTAAA
gi|10 : caaaaaattCAAGTGTTAAGTGCATCACTGTTCTATCT-------GCATATAAACAG-ATAAC-G-A-ATTAAAGCAGTGGTGCATTGAACCgcatcaa
gi|11 : tCAAGGGTTCAGCACAACACTGTTCTATCT-------CTTCATGAACAA-ATAAG-G---AATATAGCAGTGTTGCGTTGAACCatc
gi|12 : aatCGAGGATTATGTGCAACATTGTTCTATCT-------ATATATAAACAT-ATAAA-G-A-AATAGATCAGTGTTGCATTGAACCa
gi|14 : atCGAGTATTCAGTGCAACACTATTCTATCT-------ACATGTAAACAA-ATAAG-G-A-AATAGAGGAGTGTTGGATTGAAg
gi|17 : tttGAGGGTTCAGCACAA-ACTGATCTATCA-------ACTTATGAACAA-ATAAG-G-A-AATAGAGCAGTGTTGTATTAAATCt
gi|18 : aCAAGTGTTTAGTGCATCACTGTTCTATCT-------ACATATAAACAG-ATAAC-G-A-ATTAAAGCAGTGGTGCATTGAACCat
gi|19 : AGGGTTCAGTGCAACACTGTCCTTACT-------ACATGTAAACAA-ATATG-A-A-AATAGAGCAGTGTTGCGTCAGACCa
gi|20 : aaCGAGGGTTCAGCGCAACACTGTTCTATTT-------ACATATAAACAT-ATAAT-G-A-AATAAAACAGTGTTGCGTTGGACC
gi|22 : AGGGCTCAGTGCAAAACCAGTCTATCT-------AC
gi|23 : gatttagtgcaaaacttttctaactcgaaatggactaagaagGAGGGTTCAGCACAA-ACTGATCTATCT-------ACTTATAAACAA-ATAAG-G-A-AATAGAGCAGTGTTGTAGTAAAC
gi|25 : caCGAGGGTTAAGCGCAACACAGTCCTACCT-------GCATTTAAAAAA-ATAAA-G-G-AATAGAACAGTGTTGCGTTGAA
gi|27 : CGAGGATTCAGCACAACACTGTTCTATCTACATAAAACATATAAACAA-ATATG-G-A-AATAGTGTAGTGT
gi|28 : tGGTTCAATGCAACACTGTCCTAACT-------ACATATGAACAA-ATAAG-A-A-AATAGAGCAGTGACGCATTGAA
gi|29 : aGTTCAGCACAACACTGTTCTATCT-------ACATATAAACAA-ATATG-G-A-AATACAGCAGTGTTCCATTGAAC
gi|3 : GTTCAGAGAAACACTGCTTTATCT-------ACATAT-AACAAGACAAA-A-A-CATAAAACAGTGTTGTGTTGA
gi|30 : aatttatcgtctgattGATGGTTAAGCGCAATACTGTTCTACCT-------GCATAT--ACAA-AAAAA-G-A-AATAGAGCAGTGTTGc
gi|31 : taAGGGTTCAGAGCAACACTATTTTATCT-------ACATACAAACAA-ATAAG-G-A-AATAGATCAGTGTTGag
gi|32 : atCAGCGCAATATTGTTTT--------------TATAAACAT-ATGAA-G-A-AATGGAGCAGTGTTGCGTTGAACC
gi|34 : aataGTTCTCTCT-------GTATA-AAACAA-ATAAGTG-A-AATAGAGCACTGTTGCATTGAACCg
gi|35 : atgACTGTTCTACCT-------GCATATA--TAA-AAAAG-G-A-AATAGAGCAGTGTTGCGTTGAACCgtca
gi|36 : GAGGGTTCAACACAACACTGTTCTATCT-------ACATATAAACAA-ATAAG-G-atc
gi|37 : CGCAACACTGTTCTATC------------------AA-ACAAG-A-A-GATACAGCAGTGTTGCGTTGGACCtgttgcatc
gi|39 : AATCAA-ATTAG-G-A-AATAGAGCAGTATTGCATTGAATCatc
gi|40 : TCT-------GCATATAAACAA-ATAAG-G-A-TATATGGCAGTGTTGCGTTGAACCatcgaattat
gi|41 : CATATAAACAA-ATGAG-G-A-AATAGAGCAGTGTTGTGTTGAACCt
gi|6 : GTGCAATATTGTGCTATCA-------ATGTATAAACAA-ATAAG-G-A-AACAAAGCAGTGTTGCGTTAAAata
gi|9 : gtgaatcgaaatttcagtgcCAAGGGTTCAGTGCAACACTGTTCTATCT-------ACAAAT-AACAA-ATAAG-GTATAAT--AGTAGTGCTGTGCTAAACC
blockSeqs : ACATAAA G T T T
blockSeqs : . . . . .
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blockSeqCons :
originalCons : CGAGGGTTCAGCGCAACACTGTTCTATCT-------ACATATAAACAA-ATAAG-G-A-AATAGAGCAGTGTTGCGTTGAACC
finalCons : CGAGGGTTCAGCGCAACACTGTTCTATCT-------ACATATAAACAA-ATAAG-G-A-AATAGAGCAGTGTTGCGTTGAACC
13 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): ATCGAGATCGTAATGCAAAATTATCCTTATTTAATATAGACTAGAAAGTTAGATAGACTAGTTTTTACTCCAAACCTTCAAT
Unaligned ( gi|4 ): ATCGAGGACATAGTGCAAACCAATATAGATAAGGACGTGAGATAGACTAGTTTTTCACCAAAACACCTCGATATATCAAT
Unaligned ( gi|5 ): GAGGGCTTACTTCAAAACTAGTCTTATTCAATAAAAACAAAAAAGGCAGATAGACTTTAAGTTTGAACTAAGTCTTTGAT
Unaligned ( gi|7 ): TGAATGTTTAATGCAAAACCAGTCTAACTCAATACAGATTAAGGAAGTAGACAGCTTAATGTAGCGATAATCACTCAA
Unaligned ( gi|8 ): GAGCACTTAGTGCTAAACTAGTCTAGCTCAATAAACACTAAGGAGGTAGGTAAGTAGTTTTGCACTAGGGACCTCTG
Unaligned ( gi|13 ): AGGGCCTAATTCAAAATTAGTCTAACTCAATACAGATTAAGAAGGAAGATAGACTAGTCTGCGCTAAGCTCTCG
Unaligned ( gi|15 ): AGGGCCTAATTCAAAATTAGTCTAACTCAATACAGATTAAGAAGGAAGATAGACTAGTCTGCGCTAAGCTCTC
Unaligned ( gi|16 ): GGTCTTGGTGCAAAACTAATGGAATGCAACATGGACAGAGAAGGTTAAGAGACTAGTTTTGCACTAAGTCCTA
Unaligned ( gi|21 ): ATCATTTGATGTAAAAAAAGTGTAACTTAATATAGTCCAAGAAGGAAGATAGACTAGTTTTCCGATAAGTCT
Unaligned ( gi|24 ): ACTTACTGCAAACCTAGCCCAACTCCATTTAGACTAAGAAGTTACATAGACTAGTTTTGCACCGAGCCTT
Unaligned ( gi|26 ): CAGTGCAAATCTGGTCTAACTCAATATAGATGAGAAAGGTGTACAGACTAGTTATGCGCTAAGTCCTTC
Unaligned ( gi|33 ): AAAGCTTGTGTAACTCAATATATACAAAGAAGGTAGATAGACTAGTTTGGCATTAAGAC
Unaligned ( gi|38 ): AAAACTAGCATAACTCAATAAAGACAAAGAAGTTAGATAGACCAGTTTTGCA
Alignments
lowQualScore : 5555555 1 1 1 1
lowQualScore : ....... . . . .
lowQualScore : 0000000 5 5 5 5
consensus : CGAGGGTTCAGCGCAACACTGTTCTATCT-------ACATATAAACAA-ATAAG-G-A-AATAGAGCAGTGTTGCGTTGAACC
Reference ( family-328 ) : CGAGGGTTCAGCGCAACACTGTTCTATCT-------ACATATAAACAA-ATAAG-G-A-AATAGAGCAGTGTTGCGTTGAACC
gi|1 : GAAGGTTCCATGTAACAATGGTCTATCT-------ACATATAAACAA-ATTAG-G-A-AATAGAGCAGTGCAGCATTAAA
gi|10 : caaaaaattCAAGTGTTAAGTGCATCACTGTTCTATCT-------GCATATAAACAG-ATAAC-G-A-ATTAAAGCAGTGGTGCATTGAACCgcatcaa
gi|11 : tCAAGGGTTCAGCACAACACTGTTCTATCT-------CTTCATGAACAA-ATAAG-G---AATATAGCAGTGTTGCGTTGAACCatc
gi|12 : aatCGAGGATTATGTGCAACATTGTTCTATCT-------ATATATAAACAT-ATAAA-G-A-AATAGATCAGTGTTGCATTGAACCa
gi|14 : atCGAGTATTCAGTGCAACACTATTCTATCT-------ACATGTAAACAA-ATAAG-G-A-AATAGAGGAGTGTTGGATTGAAg
gi|17 : tttGAGGGTTCAGCACAA-ACTGATCTATCA-------ACTTATGAACAA-ATAAG-G-A-AATAGAGCAGTGTTGTATTAAATCt
gi|18 : aCAAGTGTTTAGTGCATCACTGTTCTATCT-------ACATATAAACAG-ATAAC-G-A-ATTAAAGCAGTGGTGCATTGAACCat
gi|19 : AGGGTTCAGTGCAACACTGTCCTTACT-------ACATGTAAACAA-ATATG-A-A-AATAGAGCAGTGTTGCGTCAGACCa
gi|20 : aaCGAGGGTTCAGCGCAACACTGTTCTATTT-------ACATATAAACAT-ATAAT-G-A-AATAAAACAGTGTTGCGTTGGACC
gi|22 : AGGGCTCAGTGCAAAACCAGTCTATCT-------AC
gi|23 : gatttagtgcaaaacttttctaactcgaaatggactaagaagGAGGGTTCAGCACAA-ACTGATCTATCT-------ACTTATAAACAA-ATAAG-G-A-AATAGAGCAGTGTTGTAGTAAAC
gi|25 : caCGAGGGTTAAGCGCAACACAGTCCTACCT-------GCATTTAAAAAA-ATAAA-G-G-AATAGAACAGTGTTGCGTTGAA
gi|27 : CGAGGATTCAGCACAACACTGTTCTATCTACATAAAACATATAAACAA-ATATG-G-A-AATAGTGTAGTGT
gi|28 : tGGTTCAATGCAACACTGTCCTAACT-------ACATATGAACAA-ATAAG-A-A-AATAGAGCAGTGACGCATTGAA
gi|29 : aGTTCAGCACAACACTGTTCTATCT-------ACATATAAACAA-ATATG-G-A-AATACAGCAGTGTTCCATTGAAC
gi|3 : GTTCAGAGAAACACTGCTTTATCT-------ACATAT-AACAAGACAAA-A-A-CATAAAACAGTGTTGTGTTGA
gi|30 : aatttatcgtctgattGATGGTTAAGCGCAATACTGTTCTACCT-------GCATAT--ACAA-AAAAA-G-A-AATAGAGCAGTGTTGc
gi|31 : taAGGGTTCAGAGCAACACTATTTTATCT-------ACATACAAACAA-ATAAG-G-A-AATAGATCAGTGTTGag
gi|32 : atCAGCGCAATATTGTTTT--------------TATAAACAT-ATGAA-G-A-AATGGAGCAGTGTTGCGTTGAACC
gi|34 : aataGTTCTCTCT-------GTATA-AAACAA-ATAAGTG-A-AATAGAGCACTGTTGCATTGAACCg
gi|35 : atgACTGTTCTACCT-------GCATATA--TAA-AAAAG-G-A-AATAGAGCAGTGTTGCGTTGAACCgtca
gi|36 : GAGGGTTCAACACAACACTGTTCTATCT-------ACATATAAACAA-ATAAG-G-atc
gi|37 : CGCAACACTGTTCTATC------------------AA-ACAAG-A-A-GATACAGCAGTGTTGCGTTGGACCtgttgcatc
gi|39 : AATCAA-ATTAG-G-A-AATAGAGCAGTATTGCATTGAATCatc
gi|40 : TCT-------GCATATAAACAA-ATAAG-G-A-TATATGGCAGTGTTGCGTTGAACCatcgaattat
gi|41 : CATATAAACAA-ATGAG-G-A-AATAGAGCAGTGTTGTGTTGAACCt
gi|6 : GTGCAATATTGTGCTATCA-------ATGTATAAACAA-ATAAG-G-A-AACAAAGCAGTGTTGCGTTAAAata
gi|9 : gtgaatcgaaatttcagtgcCAAGGGTTCAGTGCAACACTGTTCTATCT-------ACAAAT-AACAA-ATAAG-GTATAAT--AGTAGTGCTGTGCTAAACC
13 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): ATCGAGATCGTAATGCAAAATTATCCTTATTTAATATAGACTAGAAAGTTAGATAGACTAGTTTTTACTCCAAACCTTCAAT
Unaligned ( gi|4 ): ATCGAGGACATAGTGCAAACCAATATAGATAAGGACGTGAGATAGACTAGTTTTTCACCAAAACACCTCGATATATCAAT
Unaligned ( gi|5 ): GAGGGCTTACTTCAAAACTAGTCTTATTCAATAAAAACAAAAAAGGCAGATAGACTTTAAGTTTGAACTAAGTCTTTGAT
Unaligned ( gi|7 ): TGAATGTTTAATGCAAAACCAGTCTAACTCAATACAGATTAAGGAAGTAGACAGCTTAATGTAGCGATAATCACTCAA
Unaligned ( gi|8 ): GAGCACTTAGTGCTAAACTAGTCTAGCTCAATAAACACTAAGGAGGTAGGTAAGTAGTTTTGCACTAGGGACCTCTG
Unaligned ( gi|13 ): AGGGCCTAATTCAAAATTAGTCTAACTCAATACAGATTAAGAAGGAAGATAGACTAGTCTGCGCTAAGCTCTCG
Unaligned ( gi|15 ): AGGGCCTAATTCAAAATTAGTCTAACTCAATACAGATTAAGAAGGAAGATAGACTAGTCTGCGCTAAGCTCTC
Unaligned ( gi|16 ): GGTCTTGGTGCAAAACTAATGGAATGCAACATGGACAGAGAAGGTTAAGAGACTAGTTTTGCACTAAGTCCTA
Unaligned ( gi|21 ): ATCATTTGATGTAAAAAAAGTGTAACTTAATATAGTCCAAGAAGGAAGATAGACTAGTTTTCCGATAAGTCT
Unaligned ( gi|24 ): ACTTACTGCAAACCTAGCCCAACTCCATTTAGACTAAGAAGTTACATAGACTAGTTTTGCACCGAGCCTT
Unaligned ( gi|26 ): CAGTGCAAATCTGGTCTAACTCAATATAGATGAGAAAGGTGTACAGACTAGTTATGCGCTAAGTCCTTC
Unaligned ( gi|33 ): AAAGCTTGTGTAACTCAATATATACAAAGAAGGTAGATAGACTAGTTTGGCATTAAGAC
Unaligned ( gi|38 ): AAAACTAGCATAACTCAATAAAGACAAAGAAGTTAGATAGACCAGTTTTGCA