lowQualScore : 777 2 1 11 1 333333333 222 1111 1 111 111 44444 11 1 1 1 1 22222222 1 1 66666 11 111 1 222 11111111111111 222 111111 11 11111111 3333333333333333 2222222222222 1 11111 1 1
lowQualScore : 000 0 5 0 33 3 4 1 666 6 6 7 1 111111111 000 1111 0 0 555 111 0 99999 7 99 2 0 8 8 0 8 5 0 6 1 4 6 44444444 6 5 1 7777 22222 0 44 99 9 1 2 2 000 3 7 0 5 000 00000000000000 333 55 55 000000 66 33333333 777777 3333333333333333 4444444444444 1 99 00000 4 55 55 55 444 0 6 4 5 4
lowQualScore : ... . . . .. . . . ... . . . . ......... ... .... . . ... ... . ..... . .. . . . . . . . . . . . . ........ . . . .... ..... . .. .. . . . . ... . . . . ... .............. ... .. .. ...... .. ........ ...... ................ ............. . .. ..... . .. .. .. ... . . . . .
lowQualScore : 000 0 3 8 88 0 2 2 666 2 0 0 4 000000000 555 2222 8 0 222 222 6 00000 8 11 2 5 8 8 0 2 0 7 7 4 2 7 22222222 3 3 0 2222 55555 7 33 00 2 4 1 4 000 0 3 0 0 999 99999999999999 999 55 55 111111 22 33333333 222222 1111111111111111 4444444444444 2 77 00000 0 55 55 55 222 7 3 0 0 1
consensus : ATGCA---TTTGTTCAAT-TTTT--TAACNACTTTCGAAATATGTTCTCGNAGTCTGTTTTGTGTATACCCATC--A-----GACACTGAAATATCACACTTCTGTTGG--CGATGCAA-GACCTTCGTCTGTCTTTGGTGGCCATATTTTGCTG-CCATTCTTTCTATNGGGCTCGAAATAGTGAACTAATGTTTAATTT-TCTTGCTATTACTATATACATATAAA-AATC--------TGCGATGCACGTACTCCACTTGTGCAACGC---GCGTTCATACAGC-TCCGTATNTGAACAC---GTTTAGCAGCT-CTT-TTTC--CAACTATATTTGACTGCAGTGTATAC--GACTGTATGTGG--TCA--AG---A-CTAC-GATAAA-AA---G-TC----TATCTGACTG----------------TGAAAT-------------TTCACGAT-TTACATG-----TTCACGG-T--T--CATAA--TTT-ATGGGACGAATAACATTACTTATTGAACGCCCCTCGT
Reference ( gi|3 ) : ATGCAATCTTT-TTCAATATTTT--TAACAACTTCCGAAATATGTTTTCATAGTTTGTATTGTGTATACCCATC--A-----AACACTGAAATGCAACACTTCTGTTAG--CTATGCAA-GACCTTCGTCTGTCTTTGGTGACAATATTTTGCTG-C--TTTTTTCTATTTGGTTCGAAAAAGTGAACTAATATTTAATGT-TCCTGATATTACCAAATACATATAAA-AATC--------TGAGATGCACTTACTCTGCCTGTGCAACGCTGTGCACTCATGCAGC-ACCATATATGAACAC---ATTTAGCAACT-CTT-TTTC--AAACTATATTTGATTGCAGTGTATAA--GACTGTATGTGG--TCA--AG---A-GTAC-CATAAA-AA---G-TC----TATCTGACTG----------------TGAAAT-------------TTCTCGAC-TTATATG-----TTCACGG-T--T--CATAA--TCT-ATGGGACGATTGACATTAGTTATTGAACGCTCCTCGT
gi|14 : ATGCA---TTTGTTCAAT---TT--TAACCACTTTCATAATAT-TTTTCGGAGTCTGATTTGTATAAACCCATC--A-----G--TCTGAAATAC
gi|8 : gaaTT-TTCAATCTTTT--TAACAACTTATGAAATATG---TCAAGGTCTGTTTTGTTTATACCCACCCGATACCCGACACTGAAATGTCACACTTCTGT
gi|2 : tacgaggggcatgcagtaagtattgctatattggtaataaaataaaaacaagaaaaaatatctttgtaatatttggttcataccttcaaagtaatcttctaaaacagaaatacacAATATCTTGATACCATTTTTCGAAACATGTATGCAAAGTCTGTTTTGTGTCTATCCAAC--G-----GACACTGAAATATCACACTTCCATTGG--CGATGCTA-GACCTGGGTCTGTCTTTGGTGGCCATAGTCTACTG-CCATTCTTTCTATGGGGCTCACAATAGTGAGTTAATTTTTAATTTCTCTTGCTATTACCATAT-TATATAAA-AACC--------TGCGATTCACGTACTCCATTTGTGCAAGGC---GCATTTATACAGCTACT---TAAGATTACGGAATTT------T-TTT-TTTCTGGAAC---------TCGC-------AC--GA-TGTGT-TGGTATCATCGG---ATGCAC-AACAAATAA---A-TC----TATCTGACTG----------------TGAAGT-------------TTTAAGAT-TAAGATG-----TTCACGG-G--T--CATAA--TTT-ATGGCACaaac
gi|1 : tacgaggagtggtcaataagtagtgttatactggtgataaactaaaaacaatcaatTTT--TAACCATTTCCAGAATATGTCCTCGTAGTCTGTTTTGTGCATACCCTTC--A-----GAGATTGAAATATCACATTTCTGTTAGAACTA---AATGACC---GTCTGTCTTTGATGGCCTTAGTTTACTT-CCATTCTTTCTATCGTGTTTGAAATTGTGAACTAATGTTTAATTT-TCATTCTATTACTATATACATATAAC-ACTC--------TGTGATACACGTACTTCACTTGTCCAACA---TGCATTCGTACATC-TCCGTATTTGAGCAA---ATTTAGAAGCT-CTT-TTTC-----CT--------------TCTATAACTGACTGTATGTGT--TCA--AG---A-CTTC-GATGAA-Atttacgccccttgtacatat
gi|4 : gaaacgtatgtttgaacttttatgcatattgttataaggaatgaatgtttttgatgaatattaatgagataagaactaaaagaagcacatacaaagtaaacgaactcagaaatggttcacatatagtttgcttgttgcatgtaagttcttacctcatcactatttaatatacaaagggcgttcaataagtattgtcgtatttgtgataaaatgcaaacaacaagatactatcttgataatatttggtttatatttataaagtaatctcctttaatagatatgcgcttgttccgtcTATGTTCTCGTCGTCCGTTTAGTGTATACCCTTT--A-----GACACTGAAATTTCACATTTCTGTTGG--CGATGCAA-TACCTTCGCCTGTCTTTGGCAGCCATATTTTGCTG-CCATTCTTTTTGTTcatattgtgggaaacgcatgcatcgtgtgttggtatcatcggatgtacaacaaaaaactttatataaatgaaatttcacgattttcatgatcacggttcataatttataggacaataacaatacatattgaacgcccttcg
gi|13 : ACACTGAAATGTCACACTTCTGTAAA--CGATTCAactatatacatataaaatatgtgatgcacgtaccacttgtgcaacatgcattcatacattttgagcacgttaaggagctccttttccaaatgaatataaatgacttgatgtgttcaatattttgatgaaaagttttctgcagccttttggtatcatcggatgcataacaaataaataataagttcacgatttatatgttcacggttaacattatttattgaacgcccc
gi|5 : cccgACAATTCAGTTGG--CGATGCAA-GACAATCGTCTTTCTTTGATGGGCATATTTTGCT-------------ATTGGGCTCGAAATAGTGAACCAATGTTTAATTT-TCTTGCTATTACTATATACATATGAA-AATC--------TGCGATAAACGTGTTCTGCTCGTGCAAC-----GCGCTTATACAGC-TCCGTATATGAACAC---ATTTACCAGTTACTT-TCTC--CAACTGTATTTGACTGAAGTGTATAT--TACTGTATGCAG--TCA--AG---A-CTAC-GATAAA-AT---G-TT----T-TCTGAcggtttataattttatgagacgaatgactttactcattgaacgtcccttgt
gi|12 : taccTCCTTGGTTGCAATATTGCGCTGGCA-TTCTTTCTATGAGACTCGAAAAAGAGAACTATTGTTTAATGT-CCTTGCTATTACTATAAACAaactcacacgaattgtttgttagtatcatcggatacacaataaataa
gi|4 : gaTGTTACTATATACATAT-AA-AATA--------TGTGATGCACGTA--CCACTTGTGCAAC---ATGCATTCATA-------CAT-TTTGAGCAC---GTTAAGGAGCTCCTT-TTCC--AAA-------TGA-------ATATAAATGACTTGATGTGT--TCA--AT---A-TTTT-GATGAA-AA---G-TT----T-TCTG
gi|6 : tatgttctcgtcgtccgtttagtgtataccctttagacactgaaatttcacatttctgttggcgatgcaataccttcgcctgtctttggcagccatattttgctgccattcttttCCACATCTATATGAA-TATC--------TGTGATGCACATACTTTACTTGTACAACGCC---TACTCTTACAGC-TCTGCATATGAACAC---ATTTAGCAGCT-CTT-TTTC--CAATTATATTTAACTGCATTGT-TAAC-GACTGTATGAGG--TCA--AG---A-CTAA-GTTAAA-AA---T-TC----Tcagccttttggtatcatcggatgcataacaaataaataataagttcacgatttatatgttcacggttaacattatttattgaacgcccc
gi|7 : ACATGTAAATGATCGATATACTTGTGATGCGCGTGCTCCAATTGTACAACGC---ACGTTCACGTAGC-TCCGTATTTGAAGAC---GTTCAGCAGCT-TTT-AAGC--CAACTATATTTGACTGCAATGTACAC--GACAATACGTTA--CCA--AGACTA-GTGC-AATTAA-AA---G-TT----AATTTG-CTGGCATGATCGAATGCACTAAAATCTAAATGAGCATTTTCTCAATATAACATG-----CTCACGG-T--T--CGTAA--TCT-ATGGTCTGAGTACCATTATTTATGGAACGTCCCTCGgaaagaacttgcatgatttgtttgtcagatgcacagcaaataaatctggctgactgtgaaatttcatgatttatatgttcacagttcataatttatgggatgaataacattgcttattgaatgccccc
gi|11 : ATATG--TAC---ATTTAGTAGCG-TTTGTCCC--CAACTTTATTTTACTGCAGTGTATAC--GACTGTATGTGG--CCA--AG---A-TTAA-GATAAA-TA---A-TTAAAATATCTGGCTG----------------TGAAAT-------------TTTACGAT-TTACATG-----TTCATGG-T--T--TATAA--TTC-ATAGGACGAATAACATAACTTATTGAAGACCCCTCGT
gi|10 : T-TTT-TTTC--CAACTATATTTGACTGCTATATATAC--GACTGTATGTGG--TCC--AG---A-CTAC-AATAAA-AATGTG-TC----TA
gi|9 : ACTAT-TTTGACTGCAGTGTACAC--GATTATATGTGA--CCA--AG---A-CTAA-GATCAA-AT---G-TC----C-TCTGAgaacttgcacaattttttgttggtatcatcgtatgcagaacaaataaatctatctgagtatgacattttacaatttacttgttcatggataataataatttatgggacg
gi|6 : tG--TCA--GA---T-GCAC-AGCAAATAA---A-TC----TGGCTGACTG----------------TGAAAT-------------TTCATGAT-TTATATG-----TTCACAG-T--T--CATAA--TTT-ATGGGATGAATAACATTGCTTATTGAATGCCCCaaatcgaacgatttcttttctggcttaatccaatgcactacacataaatctatctgactgtcgaacttttcgaaataacatttcgtattttattggttaaataacattatttattgaacgcccctc
gi|1 : ccacatctatatgaatatctgtgatgcacatactttacttgtacaacgcctactcttacagctctgcatatgaacacatttagcagctctttttccaattatatttaactgcattgttaacgactgtatgaggtcaagactaagttaaaaattctgaaagaacttgcatgatttgttt-GTAC-AACAAA-AA---ACTT----TATATAA--A----------------TGAAAT-------------TTCACGAT-TTTCATG-----ATCACGG-T--T--CATAA--TTT-ATAGGACAA-TAACAATACATATTGAACGCCCTTCGc
gi|9 : gaaacgtatgtttgaacttttatgcatattgttataaggaatgaatgtttttgatgaatattaatgagataagaactaaaagaagcacatacaaagtaaacgaactcagaaatggttcacatatagtttgcttgttgcatgtaagttcttacctcatcactatttaatatacaaagggcgttcaataagtattgtcgtatttgtgataaaatgcaaacaacaagatactatcttgataatatttggtttatatttataaagtaatctcctttaatagatatgcgcttgttccgtcttttaaccatttccagaatatgtcctcgtagtctgttttgtgcatacccttcagagattgaaatatcacatttctgttagaactaaatgaccgtctgtctttgatggccttagtttacttccattctttctatcgtgtttgaaattgtgaactaatgtttaattttcattctattactatatacatataacactctgtgatacacgtacttcacttgtccaacatgcattcgtacatctccgtatttgagcaaatttagaagctctttttccttctataactgactgtatgtgttcaagacttcgatgaaacatattgtgggaaacgcatgcatcgtgtgttggtatcatcggatTACACATAAA--------TC----TATCTGACTG----------------TCGAAC-------------TTTTCGAA---ATA----------ACAT-T--T--CGTAT--TTT-ATTGGTTAAATAACATTATTTATTGAACGCCCCTC
gi|10 : tactattttgactgcagtgtacacgattatatgtgaccaagactaagatcaaatgtcctctgaaaatcgaacgatttcttttctggcttaatccaatgcacACAAATAA---A-TC----TATCTGAGTA----------------TGACAT-------------TTTACAAT-TTACTTG-----TTCATGGATAAT--AATAA--TTT-ATGGGACG
gi|13 : tttttttccaactatatttgactgctatatatacgactgtatgtggtccagactacaataaaaatgtgtctagaacttgcacaattttttgttggtatcatcgtatgcagaCCGACAC----------------TGAAAT-------------GTCAC-AC-TTCTGTAAACGATTCACGG-T--T--TATAA--TTTTATGAGACGAATGACTTTACTCATTGAACGTCCCTTGT
gi|4 : cAAG-------------TTCACGAT-TTATATG-----TTCACGG-T--TAACATTA--TTT-ATTGAACG
gi|4 : tatgttctcgtcgtccgtttagtgtataccctttagacactgaaatttcacatttctgttggcgatgcaataccttcgcctgtctttggcagccatattttgctgccattctttttgttactatatacatataaaatatgtgatgcacgtaccacttgtgcaacatgcattcatacattttgagcacgttaaggagctccttttccaaatgaatataaatgacttgatgtgttcaatattttgatgaaaagttttctgcagccttttggtatcatcggatgcataacaaataaataatATAAG-----TTCACGA-T--T--TATATGTTC-------ACGGTTAACATTATTTATTGAACGCCCCcccc
gi|2 : tatgttctcgtcgtccgtttagtgtataccctttagacactgaaatttcacatttctgttggcgatgcaataccttcgcctgtctttggcagccatattttgctgccattctttttgttactatatacatataaaatatgtgatgcacgtaccacttgtgcaacatgcattcatacattttgagcacgttaaggagctccttttccaaatgaatataaatgacttgatgtgttcaatattttgatgaaaagttttctgcagccttttggtatcatcggatgcataacaaataaataTAACACTACTTATTGACCACTCCTCGT
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|15 ): ATACGAAGGGACATTTAATAAGTAATGTTATGTTGATGATAAAATAAAACAACAAATACTTTCTTGATATTATTTTTTAT
Unaligned ( gi|16 ): TATTGATAATAACATGAAAACAAGAAGTTATAACCTGATGATATTTAATTCTTACCACCAAAGTAATCTTC
Alignments
lowQualScore : 111 1 2 11111111 22222222 111 2222222222 11111 111111111 11111 11 1111111111111 3333333333333333333 1111111111111
lowQualScore : 777 5 0 3 1 2 88 1 99999999 66 2 1 1 0 6 0 2 5 00000000 2 000 8 0 0 2 9999 1 4 4 5555555555 1 777 777 1 00000 666666666 00000 4 66666 11 7 666666 3333333333333 3333333333333333333 5555555555555 2 555 44 3 3 77 3 0 1 44 3
lowQualScore : ... . . . . . .. . ........ .. . . . . . . . . ........ . ... . . . . .... . . . .......... . ... ... . ..... ......... ..... . ..... .. . ...... ............. ................... ............. . ... .. . . .. . . . .. .
lowQualScore : 555 0 0 2 0 2 22 0 33333333 66 5 0 4 6 7 1 3 7 77777777 7 000 6 7 7 8 9999 4 4 4 6666666666 5 000 000 4 00000 111111111 00000 0 55555 00 3 666666 6666666666666 2222222222222222222 7777777777777 9 000 22 3 3 99 3 2 2 22 3
consensus : ATGCA---CTTGTTCAAT-TTTTTAACNACTTCCGAAATATGTTTTCGNAGTCTGTTTTGTGTATACCCATC----A---GACACTGAAATATCACACTTCTGTTGGCGATGCAAGACCTTCGTCTGTCTTTGGTGGCCATATTTTGCTGCCATTCTTTCTATCGGGCTCGAAATAGTGAACTAATGTTTAATTT-TCTTGCTATTACCATATACATATAAA-AATC--------TGCGATGCACGTACTCCGCTTGTGCAACGC---GCATTCATACAGCTCCGTATNTGAACACG---TTTAGCAGCT-CTT-TTTCC----------AACTATAT---TT---GACTGCAGTG-----TAT--------ACG-----ACTGTATGT-GG--T--CA--AGAC-TA---CG-ATAAA-AAG-TC----TATCTGACTG----------------TGAAAT-------------TTCACGAT-T---TA-CATG-TTCACGG-T--TCATAATTT-ATGGGACGAATA--ACATTACTTATTGAACG-CCCCTCGT
Reference ( family-2788 ) : ATGCA---TTTGTTCAAT-TTTTTAACNACTTTCGAAATATGTTCTCGNAGTCTGTTTTGTGTATACCCATC----A---GACACTGAAATATCACACTTCTGTTGGCGATGCAAGACCTTCGTCTGTCTTTGGTGGCCATATTTTGCTGCCATTCTTTCTATNGGGCTCGAAATAGTGAACTAATGTTTAATTT-TCTTGCTATTACTATATACATATAAA-AATC--------TGCGATGCACGTACTCCACTTGTGCAACGC---GCGTTCATACAGCTCCGTATNTGAACACG---TTTAGCAGCT-CTT-TTTCC----------AACTATAT---TT---GACTGCAGTG-----TAT--------ACG-----ACTGTATGT-GG--T--CA--AGAC-TA---CG-ATAAA-AAG-TC----TATCTGACTG----------------TGAAAT-------------TTCACGAT-T---TA-CATG-TTCACGG-T--TCATAATTT-ATGGGACGAATA--ACATTACTTATTGAACG-CCCCTCGT
gi|1 : G-T--TTGCATTTT-ATC--ACAAATACGACAATACTTATTGAACG-CCCTTTGT
gi|1 : gaaacgtatgtttgaacttttatgcatattgttataaggaatgaatgtttttgatgaatattaatgagataagaactaaaagaagcacatacaaagtaaacgaactcagaaatggttcacatatagtttgcttgttgcatgtaagttcttacctcatcactatttaatatATGCG---CTTGTTCCGT-CTTTTAACCATTTCCAGAATATGTCCTCGTAGTCTGTTTTGTGCATACCCTTC----A---GAGATTGAAATATCACATTTCTGTTAGAACTAAATGACC---GTCTGTCTTTGATGGCCTTAGTTTACTTCCATTCTTTCTATCGTGTTTGAAATTGTGAACTAATGTTTAATTT-TCATTCTATTACTATATACATATAAC-ACTC--------TGTGATACACGTACTTCACTTGTCCAACAT---GCATTCGTACATCTCCGTATTTGAGCAAA---TTTAGAAGCT-CTT-TTTCCTTCTATAACTGACTGTATGTGTTCAAGACTTCGATGAAACATATTGTGGGAAACGCATGCATCGTGTGTTGG--TATCATCGGATGTA---CA-ACAAA-AAACTT----TATATAA--A----------------TGAAAT-------------TTCACGAT-T---TT-CATG-ATCACGG-T--TCATAATTT-ATAGGAC-AATA--ACAATACATATTGAACG-CCCTTCGaacaagatactatcttgataatatttggtttatatttataaagtaatctcctttaatagatatgcgcttgttccgtcttttaaccatttccagaatatgtcctcgtagtctgttttgtgcatacccttcagagattgaaatatcacatttctgttagaactaaatgaccgtctgtctttgatggccttagtttacttccattctttctatcgtgtttgaaattgtgaactaatgtttaattttcattctattactatatacatataacactctgtgatacacgtacttcacttgtccaacatgcattcgtacatctccgtatttgagcaaatttagaagctctttttccttctataactgactgtatgtgttcaagacttcgatgaaacatattgtgggaaacgcatgcatcgtgtgttggtatcatcggatgtacaacaaaaaactttatataaatgaaatttcacgattttcatgatcacggttcataatttataggacaataacaatacatattgaacgcccttcg
gi|10 : gaaacgtatgtttgaacttttatgcatattgttataaggaatgaatgtttttgatgaatattaatgagataagaactaaaagaagcacatacaaagtaaacgaactcagaaatggttcacatatagtttgcttgttgcatgtaagttcttacctcatcactatttaatatacaaagggcgttcaataagtattgtcgtatttgtgataaaatgcaaacaacaagatactatcttgataatatttggtttatatttataaagtaatctcctttaatagatT-TTT-TTTCC----------AACTATAT---TT---GACTGCTATA-----TAT--------ACG-----ACTGTATGT-GG--T--CC--AGAC-TA---CA-ATAAA-AA--TG----TGTCTA---------------------GAACT-------------TGCACAAT-T---T--TTTG-TT---GG-TA-TCATCGTAT-GCAGAACAAATA--A
gi|10 : -ACAAATAAA-TC----TATCTGAGTA----------------TGACAT-------------TTTACAAT-T---TA-CTTG-TTCATGGATAATAATAATTT-ATGGGACGatctatctgagtatgacattttacaatttacttgttcatggataataataatttatgggacg
gi|11 : tttttttccaactatatttgactgctatatatacgactgtatgtggtccagactacaataaaaatgtgtctagaacttgcacaattttttgttggtatcatcgtatgcagaATATGTACA-----TTTAGTAGCG-TTTGTCCCC----------AACTTTAT---TT---TACTGCAGTG-----TAT--------ACG-----ACTGTATGT-GG--C--CA--AGAT-TA---AG-ATAAA-TAA-TTAAAATATCTGGCTG----------------TGAAAT-------------TTTACGAT-T---TA-CATG-TTCATGG-T--TTATAATTC-ATAGGACGAATA--ACATAACTTATTGAAGA-CCCCTCGT
gi|12 : TCCTTGGTTGCAATATTGCGCTGGCATTCTTTCTATGAGACTCGAAAAAGAGAACTATTGTTTAATGT-CCTTGCTATTACTATAAACA
gi|13 : gaCCGACAC----------------TGAAAT-------------GTCACACT-TCTGTA-AACGATTCACGG-T--TTATAATTTTATGAGACGAATG--ACTTTACTCATTGAACG-TCCCTTGT
gi|14 : cATGCA---TTTGTTCAAT-TTT--AACCACTTTCATAATAT-TTTTCGGAGTCTGATTTGTATAAACCCATC----A---G--TCTGAAATA
gi|15 : gaaATA--ACATTACTTATTAAATGTCCCTTCGTc
gi|2 : atATA--ACACTACTTATTGACCA-CTCCTCGTgttgatgataaaataaaacaacaaatactttcttgatattattttttat
gi|2 : tTTTCGAAACATGTATGCAAAGTCTGTTTTGTGTCTATCCAAC----G---GACACTGAAATATCACACTTCCATTGGCGATGCTAGACCTGGGTCTGTCTTTGGTGGCCATAGTCTACTGCCATTCTTTCTATGGGGCTCACAATAGTGAGTTAATTTTTAATTTCTCTTGCTATTACCATAT-TATATAAA-AACC--------TGCGATTCACGTACTCCATTTGTGCAAGGC---GCATTTATACAGCTACTTA--AGATTACGGAATTT------T-TTT-TTTCTGG--------AACT---------------CGC--------------------ACG-----A-TGTGT-T-GGTAT--CATCGGATGCA---CA-ACAAATAAA-TC----TATCTGACTG----------------TGAAGT-------------TTTAAGAT-T---AA-GATG-TTCACGG-G--TCATAATTT-ATGGCACactggtgataaactaaaaacaatcaataatatcttgataccatttttcgaaacatgtatgcaaagtctgttttgtgtctatccaacggacactgaaatatcacacttccattggcgatgctagacctgggtctgtctttggtggccatagtctactgccattctttctatggggctcacaatagtgagttaatttttaatttctcttgctattaccatattatataaaaacctgcgattcacgtactccatttgtgcaaggcgcatttatacagctacttaagattacggaattttttttttctggaactcgcacgatgtgttggtatcatcggatgcacaacaaataaatctatctgactgtgaagttttaagattaagatgttcacgggtcataatttatggcactttacgccccttgtacatat
gi|3 : tacgaggagtggtcaataagtagtgttatactggtgataaactaaaaacaatcaataatatcttgataccattATGCAATCTTT-TTCAATATTTTTAACAACTTCCGAAATATGTTTTCATAGTTTGTATTGTGTATACCCATC----A---AACACTGAAATGCAACACTTCTGTTAGCTATGCAAGACCTTCGTCTGTCTTTGGTGACAATATTTTGCTGC--TTTTTTCTATTTGGTTCGAAAAAGTGAACTAATATTTAATGT-TCCTGATATTACCAAATACATATAAA-AATC--------TGAGATGCACTTACTCTGCCTGTGCAACGCTGTGCACTCATGCAGCACCATATATGAACACA---TTTAGCAACT-CTT-TTTCA----------AACTATAT---TT---GATTGCAGTG-----TAT--------AAG-----ACTGTATGT-GG--T--CA--AGAG-TA---CC-ATAAA-AAG-TC----TATCTGACTG----------------TGAAAT-------------TTCTCGAC-T---TA-TATG-TTCACGG-T--TCATAATCT-ATGGGACGATTG--ACATTAGTTATTGAACG-CTCCTCGTtttacgccccttgtacatat
gi|4 : TATGTTCTCGTCGTCCGTTTAGTGTATACCCTTT----A---GACACTGAAATTTCACATTTCTGTTGGCGATGCAATACCTTCGCCTGTCTTTGGCAGCCATATTTTGCTGCCATTCTTTTTGT
gi|4 : T-TCTTTTTGTTACTATATACATAT-AA-AATA--------TGTGATGCACGTA--CCACTTGTGCAACAT---GCATTCATACA--T-----TTTGAGCACG---TTAAGGAGCT-CCT-TTTCC----------AA--ATG---------------AATA-----TAA--------ATG-----ACTTGATGT-GT--T--CA--ATAT-TT---TG-ATGAA-AAG-TT----T-TCTGtactatatacatataaaatatgtgatgcacgtaccacttgtgcaacatgcattcatacattttgagcacgttaaggagctccttttccaaatgaatataaatgacttgatgtgttcaatattttgatgaaaagttttctgcagccttttggtatcatcggatgcataacaaataaataataagttcacgatttatatgttcacggttaacattatttattgaacgcccc
gi|4 : tatgttctcgtcgtccgtttagtgtataccctttagacactgaaatttcacatttctgttggcgatgcaataccttcgcctgtctttggcagccatattttgctgccaAAG-------------TTCACGAT-T---TA-TATG-TTCACGG-T----------------------TA--ACATTATTTATTGAACG-CCCCcagccttttggtatcatcggatgcataacaaataaataataagttcacgatttatatgttcacggttaacattatttattgaacgcccc
gi|5 : tatgttctcgtcgtccgtttagtgtataccctttagacactgaaatttcacatttctgttggcgatgcaataccttcgcctgtctttggcagccatattttgctgccattctttttgttactatatacatataaaatatgtgatgcacgtaccacttgtgcaacatgcattcatacattttgagcacgttaaggagctccttttccaaatgaatataaatgacttgatgtgttcaatattttgatgaaaagttttctgcagccttttggtatcatcggatgcataacaaataaataatTACCACAATTCAGTTGGCGATGCAAGACAATCGTCTTTCTTTGATGGGCATATTTTG------------CTATTGGGCTCGAAATAGTGAACCAATGTTTAATTT-TCTTGCTATTACTATATACATATGAA-AATC--------TGCGATAAACGTGTTCTGCTCGTGCAACGC---GC--TTATACAGCTCCGTATATGAACACA---TTTACCAGTTACTT-TCTCC----------AACTGTAT---TT---GACTGAAGTG-----TAT--------ATT-----ACTGTATGC-AG--T--CA--AGAC-TA---CG-ATAAA-ATG-TT----T-TCTGA---------------------AACT-------------CACACGAA-T---TG-TTTG-TT
gi|6 : CCACATCTATATGAA-TATC--------TGTGATGCACATACTTTACTTGTACAACGC---CTACTCTTACAGCTCTGCATATGAACACA---TTTAGCAGCT-CTT-TTTCC----------AATTATAT---TT---AACTGCATTG-----TTA--------ACG-----ACTGTATGA-GG--T--CA--AGAC-TA---AG-TTAAA-AA--T-------TCTGA--A----------------AGAACT-------------TGCATGAT-T---Tagtatcatcggatacacaataaataa
gi|6 : A---CA-GCAAATAAA-TC----TGGCTGACTG----------------TGAAAT-------------TTCATGAT-T---TA-TATG-TTCACAG-T--TCATAATTT-ATGGGATGAATA--ACATTGCTTATTGAATG-CCCCgtttgtcagatgcacagcaaataaatctggctgactgtgaaatttcatgatttatatgttcacagttcataatttatgggatgaataacattgcttattgaatgccccc
gi|7 : ccacatctatatgaatatctgtgatgcacatactttacttgtacaacgcctactcttacagctctgcatatgaacacatttagcagctctttttccaattatatttaactgcattgttaacgactgtatgaggtcaagactaagttaaaaattctgaaagaacttgcatgatttgtttgtcagatgcACATGTAAATGATCGATATACTTGTGATGCGCGTGCTCCAATTGTACAACGC---ACGTTCACGTAGCTCCGTATTTGAAGACG---TTCAGCAGCT-TTT-AAGCC----------AACTATAT---TT---GACTGCAATG-----TAC--------ACG-----ACAATACGT-TA--C--CA--AGAC-TAGTGCA-ATTAA-AAG-TT----AATTTG-CTGGCATGATCGAATGCACTAAAATCTAAATGAGCATTTTCTCAATAT---AA-CATG-CTCACGG-T--TCGTAATCT-ATGGTCTGAGTA--CCATTATTTATGGAACG-TCCCTCGc
gi|8 : ATA--GCAATACTTACTGCATG-CCCCTCGT
gi|8 : tATACA---CTT-TTCAATCTTTTTAACAACTTATGAAATATGT---CAAGGTCTGTTTTGTTTATACCCACCCGATACCCGACACTGAAATGTCACACTTCTGTattggtaataaaataaaaacaagaaaaaatatctttgtaatatttggttcataccttcaaagtaatcttctaaaacagaaatacacttttcaatctttttaacaacttatgaaatatgtcaaggtctgttttgtttatacccacccgatacccgacactgaaatgtcacacttctgtaaac
gi|9 : tacgaggggcatgcagtaagtattgctatattggtaataaaataaaaacaagaaaaaatatctttgtaatatttggttcataccttcaaagtaatcttctaaaacagaaACTAT-T---TT---GACTGCAGTG-----TAC--------ACG-----ATTATATGT-GA--C--CA--AGAC-TA---AG-ATCAA-ATG-TC----C-TCTGA---------------------AAAT-------------CGAACGAT-T---Taaac
gi|9 : tAC-TA---CACATAAA-----TC----TATCTGACTG----------------TCGAAC-------------TTTTCGAA-A---TAACAT----------T--TCGTATTTT-ATTGGTTAAATA--ACATTATTTATTGAACG-CCCCTCcttttctggcttaatccaatgcactacacataaatctatctgactgtcgaacttttcgaaataacatttcgtattttattggttaaataacattatttattgaacgcccctc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TATTGATAATAACATGAAAACAAGAAGTTATAACCTGATGATATTTAATTCTTACCACCAAAGTAATCTTC
Alignments
lowQualScore : 11 2 11111111 22222222 111 2222222222 11111 111111111 11111 11 1111111111111 3333333333333333333 1111111111111
lowQualScore : 33 8 0 3 1 1 6 1 99999999 66 2 6 1 0 6 0 5 1 00000000 2 1 000 0 0 0 2 9999 1 4 4 5555555555 1 777 777 1 00000 666666666 00000 4 66666 11 7 666666 3333333333333 3333333333333333333 5555555555555 2 555 44 3 3 77 3 0 1 44 3
lowQualScore : .. . . . . . . . ........ .. . . . . . . . . ........ . . ... . . . . .... . . . .......... . ... ... . ..... ......... ..... . ..... .. . ...... ............. ................... ............. . ... .. . . .. . . . .. .
lowQualScore : 88 8 0 2 0 4 0 0 33333333 66 5 4 4 6 7 1 7 4 77777777 7 4 000 1 7 7 8 9999 4 4 4 6666666666 5 000 000 4 00000 111111111 00000 0 55555 00 3 666666 6666666666666 2222222222222222222 7777777777777 9 000 22 3 3 99 3 2 2 22 3
consensus : ATGCA--CTTGTTCAAT-TTTTTAACNACTTCCGAAATATGTTTTCGNAGTCTGTTTTGTGTATACCCATC----A---GACACTGAAATATCACACTTCTGTTGGCGATGCAAGACCTTCGTCTGTCTTTGGTGGCCATATTTTGCTGCCATTCTTTCTATCGGGCTCGAAATAGTGAACTAATGTTTAATTT-TCTTGCTATTACCATATACATATAAA-AATC--------TGCGATGCACGTACTCCGCTTGTGCAACGC---GCATTCATACAGCTCCGTATNTGAACACG---TTTAGCAGCT-CTT-TTTCC----------AACTATAT---TT---GACTGCAGTG-----TAT--------ACG-----ACTGTATGT-GG--T--CA--AGAC-TA---CG-ATAAA-AAG-TC----TATCTGACTG----------------TGAAAT-------------TTCACGAT-T---TA-CATG-TTCACGG-T--TCATAATTT-ATGGGACGAATA--ACATTACTTATTGAACG-CCCCTCGT
Reference ( family-2788 ) : ATGCA--CTTGTTCAAT-TTTTTAACNACTTCCGAAATATGTTTTCGNAGTCTGTTTTGTGTATACCCATC----A---GACACTGAAATATCACACTTCTGTTGGCGATGCAAGACCTTCGTCTGTCTTTGGTGGCCATATTTTGCTGCCATTCTTTCTATCGGGCTCGAAATAGTGAACTAATGTTTAATTT-TCTTGCTATTACCATATACATATAAA-AATC--------TGCGATGCACGTACTCCGCTTGTGCAACGC---GCATTCATACAGCTCCGTATNTGAACACG---TTTAGCAGCT-CTT-TTTCC----------AACTATAT---TT---GACTGCAGTG-----TAT--------ACG-----ACTGTATGT-GG--T--CA--AGAC-TA---CG-ATAAA-AAG-TC----TATCTGACTG----------------TGAAAT-------------TTCACGAT-T---TA-CATG-TTCACGG-T--TCATAATTT-ATGGGACGAATA--ACATTACTTATTGAACG-CCCCTCGT
gi|1 : G-T--TTGCATTTT-ATC--ACAAATACGACAATACTTATTGAACG-CCCTTTGT
gi|1 : gaaacgtatgtttgaacttttatgcatattgttataaggaatgaatgtttttgatgaatattaatgagataagaactaaaagaagcacatacaaagtaaacgaactcagaaatggttcacatatagtttgcttgttgcatgtaagttcttacctcatcactatttaatatATGCG--CTTGTTCCGT-CTTTTAACCATTTCCAGAATATGTCCTCGTAGTCTGTTTTGTGCATACCCTTC----A---GAGATTGAAATATCACATTTCTGTTAGAACTAAATGACC---GTCTGTCTTTGATGGCCTTAGTTTACTTCCATTCTTTCTATCGTGTTTGAAATTGTGAACTAATGTTTAATTT-TCATTCTATTACTATATACATATAAC-ACTC--------TGTGATACACGTACTTCACTTGTCCAACAT---GCATTCGTACATCTCCGTATTTGAGCAAA---TTTAGAAGCT-CTT-TTTCCTTCTATAACTGACTGTATGTGTTCAAGACTTCGATGAAACATATTGTGGGAAACGCATGCATCGTGTGTTGG--TATCATCGGATGTA---CA-ACAAA-AAACTT----TATATAA--A----------------TGAAAT-------------TTCACGAT-T---TT-CATG-ATCACGG-T--TCATAATTT-ATAGGAC-AATA--ACAATACATATTGAACG-CCCTTCGaacaagatactatcttgataatatttggtttatatttataaagtaatctcctttaatagatatgcgcttgttccgtcttttaaccatttccagaatatgtcctcgtagtctgttttgtgcatacccttcagagattgaaatatcacatttctgttagaactaaatgaccgtctgtctttgatggccttagtttacttccattctttctatcgtgtttgaaattgtgaactaatgtttaattttcattctattactatatacatataacactctgtgatacacgtacttcacttgtccaacatgcattcgtacatctccgtatttgagcaaatttagaagctctttttccttctataactgactgtatgtgttcaagacttcgatgaaacatattgtgggaaacgcatgcatcgtgtgttggtatcatcggatgtacaacaaaaaactttatataaatgaaatttcacgattttcatgatcacggttcataatttataggacaataacaatacatattgaacgcccttcg
gi|10 : gaaacgtatgtttgaacttttatgcatattgttataaggaatgaatgtttttgatgaatattaatgagataagaactaaaagaagcacatacaaagtaaacgaactcagaaatggttcacatatagtttgcttgttgcatgtaagttcttacctcatcactatttaatatacaaagggcgttcaataagtattgtcgtatttgtgataaaatgcaaacaacaagatactatcttgataatatttggtttatatttataaagtaatctcctttaatagatT-TTT-TTTCC----------AACTATAT---TT---GACTGCTATA-----TAT--------ACG-----ACTGTATGT-GG--T--CC--AGAC-TA---CA-ATAAA-AA--TG----TGTCTA---------------------GAACT-------------TGCACAAT-T---T--TTTG-TT---GG-TA-TCATCGTAT-GCAGAACAAATA--A
gi|10 : -ACAAATAAA-TC----TATCTGAGTA----------------TGACAT-------------TTTACAAT-T---TA-CTTG-TTCATGGATAATAATAATTT-ATGGGACGatctatctgagtatgacattttacaatttacttgttcatggataataataatttatgggacg
gi|11 : tttttttccaactatatttgactgctatatatacgactgtatgtggtccagactacaataaaaatgtgtctagaacttgcacaattttttgttggtatcatcgtatgcagaATATGTACA-----TTTAGTAGCG-TTTGTCCCC----------AACTTTAT---TT---TACTGCAGTG-----TAT--------ACG-----ACTGTATGT-GG--C--CA--AGAT-TA---AG-ATAAA-TAA-TTAAAATATCTGGCTG----------------TGAAAT-------------TTTACGAT-T---TA-CATG-TTCATGG-T--TTATAATTC-ATAGGACGAATA--ACATAACTTATTGAAGA-CCCCTCGT
gi|12 : TCCTTGGTTGCAATATTGCGCTGGCATTCTTTCTATGAGACTCGAAAAAGAGAACTATTGTTTAATGT-CCTTGCTATTACTATAAACA
gi|13 : gaCCGACAC----------------TGAAAT-------------GTCACACT-TCTGTA-AACGATTCACGG-T--TTATAATTTTATGAGACGAATG--ACTTTACTCATTGAACG-TCCCTTGT
gi|14 : cATGCA--TTTGTTCAAT-TTT--AACCACTTTCATAATAT-TTTTCGGAGTCTGATTTGTATAAACCCATC----A---G--TCTGAAATA
gi|15 : gaaATA--ACATTACTTATTAAATGTCCCTTCGTc
gi|2 : atATA--ACACTACTTATTGACCA-CTCCTCGTgttgatgataaaataaaacaacaaatactttcttgatattattttttat
gi|2 : tTTTCGAAACATGTATGCAAAGTCTGTTTTGTGTCTATCCAAC----G---GACACTGAAATATCACACTTCCATTGGCGATGCTAGACCTGGGTCTGTCTTTGGTGGCCATAGTCTACTGCCATTCTTTCTATGGGGCTCACAATAGTGAGTTAATTTTTAATTTCTCTTGCTATTACCATAT-TATATAAA-AACC--------TGCGATTCACGTACTCCATTTGTGCAAGGC---GCATTTATACAGCTACTTA--AGATTACGGAATTT------T-TTT-TTTCTGG--------AACT---------------CGC--------------------ACG-----A-TGTGT-T-GGTAT--CATCGGATGCA---CA-ACAAATAAA-TC----TATCTGACTG----------------TGAAGT-------------TTTAAGAT-T---AA-GATG-TTCACGG-G--TCATAATTT-ATGGCACactggtgataaactaaaaacaatcaataatatcttgataccatttttcgaaacatgtatgcaaagtctgttttgtgtctatccaacggacactgaaatatcacacttccattggcgatgctagacctgggtctgtctttggtggccatagtctactgccattctttctatggggctcacaatagtgagttaatttttaatttctcttgctattaccatattatataaaaacctgcgattcacgtactccatttgtgcaaggcgcatttatacagctacttaagattacggaattttttttttctggaactcgcacgatgtgttggtatcatcggatgcacaacaaataaatctatctgactgtgaagttttaagattaagatgttcacgggtcataatttatggcactttacgccccttgtacatat
gi|3 : tacgaggagtggtcaataagtagtgttatactggtgataaactaaaaacaatcaataatatcttgataccattATGCAATCTTTTTCAATATTTTTAACAACTTCCGAAATATGTTTTCATAGTTTGTATTGTGTATACCCATC----A---AACACTGAAATGCAACACTTCTGTTAGCTATGCAAGACCTTCGTCTGTCTTTGGTGACAATATTTTGCTGC--TTTTTTCTATTTGGTTCGAAAAAGTGAACTAATATTTAATGT-TCCTGATATTACCAAATACATATAAA-AATC--------TGAGATGCACTTACTCTGCCTGTGCAACGCTGTGCACTCATGCAGCACCATATATGAACACA---TTTAGCAACT-CTT-TTTCA----------AACTATAT---TT---GATTGCAGTG-----TAT--------AAG-----ACTGTATGT-GG--T--CA--AGAG-TA---CC-ATAAA-AAG-TC----TATCTGACTG----------------TGAAAT-------------TTCTCGAC-T---TA-TATG-TTCACGG-T--TCATAATCT-ATGGGACGATTG--ACATTAGTTATTGAACG-CTCCTCGTtttacgccccttgtacatat
gi|4 : TATGTTCTCGTCGTCCGTTTAGTGTATACCCTTT----A---GACACTGAAATTTCACATTTCTGTTGGCGATGCAATACCTTCGCCTGTCTTTGGCAGCCATATTTTGCTGCCATTCTTTTTGT
gi|4 : T-TCTTTTTGTTACTATATACATATAAA-A-TA--------TGTGATGCACGTAC--CACTTGTGCAACAT---GCATTCATACA--T-----TTTGAGCACG---TTAAGGAGCT-CCT-TTTCC----------AA--ATG---------------AATA-----TAA--------ATG-----ACTTGATGT-GT--T--CA--ATAT-TT---TG-ATGAA-AAG-TT----T-TCTGtactatatacatataaaatatgtgatgcacgtaccacttgtgcaacatgcattcatacattttgagcacgttaaggagctccttttccaaatgaatataaatgacttgatgtgttcaatattttgatgaaaagttttctgcagccttttggtatcatcggatgcataacaaataaataataagttcacgatttatatgttcacggttaacattatttattgaacgcccc
gi|4 : tatgttctcgtcgtccgtttagtgtataccctttagacactgaaatttcacatttctgttggcgatgcaataccttcgcctgtctttggcagccatattttgctgccaAAG-------------TTCACGAT-T---TA-TATG-TTCACGG-T----------------------TA--ACATTATTTATTGAACG-CCCCcagccttttggtatcatcggatgcataacaaataaataataagttcacgatttatatgttcacggttaacattatttattgaacgcccc
gi|5 : tatgttctcgtcgtccgtttagtgtataccctttagacactgaaatttcacatttctgttggcgatgcaataccttcgcctgtctttggcagccatattttgctgccattctttttgttactatatacatataaaatatgtgatgcacgtaccacttgtgcaacatgcattcatacattttgagcacgttaaggagctccttttccaaatgaatataaatgacttgatgtgttcaatattttgatgaaaagttttctgcagccttttggtatcatcggatgcataacaaataaataatTACCACAATTCAGTTGGCGATGCAAGACAATCGTCTTTCTTTGATGGGCATATTTTG------------CTATTGGGCTCGAAATAGTGAACCAATGTTTAATTT-TCTTGCTATTACTATATACATATGAA-AATC--------TGCGATAAACGTGTTCTGCTCGTGCAACGC---GC--TTATACAGCTCCGTATATGAACACA---TTTACCAGTTACTT-TCTCC----------AACTGTAT---TT---GACTGAAGTG-----TAT--------ATT-----ACTGTATGC-AG--T--CA--AGAC-TA---CG-ATAAA-ATG-TT----T-TCTGA---------------------AACT-------------CACACGAA-T---TG-TTTG-TT
gi|6 : CCACATCTATATGAA-TATC--------TGTGATGCACATACTTTACTTGTACAACGC---CTACTCTTACAGCTCTGCATATGAACACA---TTTAGCAGCT-CTT-TTTCC----------AATTATAT---TT---AACTGCATTG-----TTA--------ACG-----ACTGTATGA-GG--T--CA--AGAC-TA---AG-TTAAA-AA--T-------TCTGA--A----------------AGAACT-------------TGCATGAT-T---Tagtatcatcggatacacaataaataa
gi|6 : A---CA-GCAAATAAA-TC----TGGCTGACTG----------------TGAAAT-------------TTCATGAT-T---TA-TATG-TTCACAG-T--TCATAATTT-ATGGGATGAATA--ACATTGCTTATTGAATG-CCCCgtttgtcagatgcacagcaaataaatctggctgactgtgaaatttcatgatttatatgttcacagttcataatttatgggatgaataacattgcttattgaatgccccc
gi|7 : ccacatctatatgaatatctgtgatgcacatactttacttgtacaacgcctactcttacagctctgcatatgaacacatttagcagctctttttccaattatatttaactgcattgttaacgactgtatgaggtcaagactaagttaaaaattctgaaagaacttgcatgatttgtttgtcagatgcACATGTAAATGATCGATATACTTGTGATGCGCGTGCTCCAATTGTACAACGC---ACGTTCACGTAGCTCCGTATTTGAAGACG---TTCAGCAGCT-TTT-AAGCC----------AACTATAT---TT---GACTGCAATG-----TAC--------ACG-----ACAATACGT-TA--C--CA--AGAC-TAGTGCA-ATTAA-AAG-TT----AATTTG-CTGGCATGATCGAATGCACTAAAATCTAAATGAGCATTTTCTCAATAT---AA-CATG-CTCACGG-T--TCGTAATCT-ATGGTCTGAGTA--CCATTATTTATGGAACG-TCCCTCGc
gi|8 : ATA--GCAATACTTACTGCATG-CCCCTCGT
gi|8 : tATACA--CTT-TTCAATCTTTTTAACAACTTATGAAATATGT---CAAGGTCTGTTTTGTTTATACCCACCCGATACCCGACACTGAAATGTCACACTTCTGTattggtaataaaataaaaacaagaaaaaatatctttgtaatatttggttcataccttcaaagtaatcttctaaaacagaaatacacttttcaatctttttaacaacttatgaaatatgtcaaggtctgttttgtttatacccacccgatacccgacactgaaatgtcacacttctgtaaac
gi|9 : tacgaggggcatgcagtaagtattgctatattggtaataaaataaaaacaagaaaaaatatctttgtaatatttggttcataccttcaaagtaatcttctaaaacagaaACTAT-T---TT---GACTGCAGTG-----TAC--------ACG-----ATTATATGT-GA--C--CA--AGAC-TA---AG-ATCAA-ATG-TC----C-TCTGA---------------------AAAT-------------CGAACGAT-T---Taaac
gi|9 : tAC-TA---CACATAAA-----TC----TATCTGACTG----------------TCGAAC-------------TTTTCGAA-A---TAACAT----------T--TCGTATTTT-ATTGGTTAAATA--ACATTATTTATTGAACG-CCCCTCcttttctggcttaatccaatgcactacacataaatctatctgactgtcgaacttttcgaaataacatttcgtattttattggttaaataacattatttattgaacgcccctc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TATTGATAATAACATGAAAACAAGAAGTTATAACCTGATGATATTTAATTCTTACCACCAAAGTAATCTTC
Alignments
lowQualScore : 11 2 11111111 22222222 111 2222222222 11111 111111111 11111 11 1111111111111 3333333333333333333 1111111111111
lowQualScore : 33 8 0 3 1 1 6 1 99999999 66 2 6 1 0 6 0 5 1 00000000 2 1 000 0 0 0 2 9999 1 4 4 5555555555 1 777 777 1 00000 666666666 00000 4 66666 11 7 666666 3333333333333 3333333333333333333 5555555555555 2 555 44 3 3 77 3 0 1 44 3
lowQualScore : .. . . . . . . . ........ .. . . . . . . . . ........ . . ... . . . . .... . . . .......... . ... ... . ..... ......... ..... . ..... .. . ...... ............. ................... ............. . ... .. . . .. . . . .. .
lowQualScore : 88 8 0 2 0 4 0 0 33333333 66 5 4 4 6 7 1 7 4 77777777 7 4 000 1 7 7 8 9999 4 4 4 6666666666 5 000 000 4 00000 111111111 00000 0 55555 00 3 666666 6666666666666 2222222222222222222 7777777777777 9 000 22 3 3 99 3 2 2 22 3
consensus : ATGCA--CTTGTTCAAT-TTTTTAACNACTTCCGAAATATGTTTTCGNAGTCTGTTTTGTGTATACCCATC----A---GACACTGAAATATCACACTTCTGTTGGCGATGCAAGACCTTCGTCTGTCTTTGGTGGCCATATTTTGCTGCCATTCTTTCTATCGGGCTCGAAATAGTGAACTAATGTTTAATTT-TCTTGCTATTACCATATACATATAAA-AATC--------TGCGATGCACGTACTCCGCTTGTGCAACGC---GCATTCATACAGCTCCGTATNTGAACACG---TTTAGCAGCT-CTT-TTTCC----------AACTATAT---TT---GACTGCAGTG-----TAT--------ACG-----ACTGTATGT-GG--T--CA--AGAC-TA---CG-ATAAA-AAG-TC----TATCTGACTG----------------TGAAAT-------------TTCACGAT-T---TA-CATG-TTCACGG-T--TCATAATTT-ATGGGACGAATA--ACATTACTTATTGAACG-CCCCTCGT
Reference ( family-2788 ) : ATGCA--CTTGTTCAAT-TTTTTAACNACTTCCGAAATATGTTTTCGNAGTCTGTTTTGTGTATACCCATC----A---GACACTGAAATATCACACTTCTGTTGGCGATGCAAGACCTTCGTCTGTCTTTGGTGGCCATATTTTGCTGCCATTCTTTCTATCGGGCTCGAAATAGTGAACTAATGTTTAATTT-TCTTGCTATTACCATATACATATAAA-AATC--------TGCGATGCACGTACTCCGCTTGTGCAACGC---GCATTCATACAGCTCCGTATNTGAACACG---TTTAGCAGCT-CTT-TTTCC----------AACTATAT---TT---GACTGCAGTG-----TAT--------ACG-----ACTGTATGT-GG--T--CA--AGAC-TA---CG-ATAAA-AAG-TC----TATCTGACTG----------------TGAAAT-------------TTCACGAT-T---TA-CATG-TTCACGG-T--TCATAATTT-ATGGGACGAATA--ACATTACTTATTGAACG-CCCCTCGT
gi|1 : G-T--TTGCATTTT-ATC--ACAAATACGACAATACTTATTGAACG-CCCTTTGT
gi|1 : gaaacgtatgtttgaacttttatgcatattgttataaggaatgaatgtttttgatgaatattaatgagataagaactaaaagaagcacatacaaagtaaacgaactcagaaatggttcacatatagtttgcttgttgcatgtaagttcttacctcatcactatttaatatATGCG--CTTGTTCCGT-CTTTTAACCATTTCCAGAATATGTCCTCGTAGTCTGTTTTGTGCATACCCTTC----A---GAGATTGAAATATCACATTTCTGTTAGAACTAAATGACC---GTCTGTCTTTGATGGCCTTAGTTTACTTCCATTCTTTCTATCGTGTTTGAAATTGTGAACTAATGTTTAATTT-TCATTCTATTACTATATACATATAAC-ACTC--------TGTGATACACGTACTTCACTTGTCCAACAT---GCATTCGTACATCTCCGTATTTGAGCAAA---TTTAGAAGCT-CTT-TTTCCTTCTATAACTGACTGTATGTGTTCAAGACTTCGATGAAACATATTGTGGGAAACGCATGCATCGTGTGTTGG--TATCATCGGATGTA---CA-ACAAA-AAACTT----TATATAA--A----------------TGAAAT-------------TTCACGAT-T---TT-CATG-ATCACGG-T--TCATAATTT-ATAGGAC-AATA--ACAATACATATTGAACG-CCCTTCGaacaagatactatcttgataatatttggtttatatttataaagtaatctcctttaatagatatgcgcttgttccgtcttttaaccatttccagaatatgtcctcgtagtctgttttgtgcatacccttcagagattgaaatatcacatttctgttagaactaaatgaccgtctgtctttgatggccttagtttacttccattctttctatcgtgtttgaaattgtgaactaatgtttaattttcattctattactatatacatataacactctgtgatacacgtacttcacttgtccaacatgcattcgtacatctccgtatttgagcaaatttagaagctctttttccttctataactgactgtatgtgttcaagacttcgatgaaacatattgtgggaaacgcatgcatcgtgtgttggtatcatcggatgtacaacaaaaaactttatataaatgaaatttcacgattttcatgatcacggttcataatttataggacaataacaatacatattgaacgcccttcg
gi|10 : gaaacgtatgtttgaacttttatgcatattgttataaggaatgaatgtttttgatgaatattaatgagataagaactaaaagaagcacatacaaagtaaacgaactcagaaatggttcacatatagtttgcttgttgcatgtaagttcttacctcatcactatttaatatacaaagggcgttcaataagtattgtcgtatttgtgataaaatgcaaacaacaagatactatcttgataatatttggtttatatttataaagtaatctcctttaatagatT-TTT-TTTCC----------AACTATAT---TT---GACTGCTATA-----TAT--------ACG-----ACTGTATGT-GG--T--CC--AGAC-TA---CA-ATAAA-AA--TG----TGTCTA---------------------GAACT-------------TGCACAAT-T---T--TTTG-TT---GG-TA-TCATCGTAT-GCAGAACAAATA--A
gi|10 : -ACAAATAAA-TC----TATCTGAGTA----------------TGACAT-------------TTTACAAT-T---TA-CTTG-TTCATGGATAATAATAATTT-ATGGGACGatctatctgagtatgacattttacaatttacttgttcatggataataataatttatgggacg
gi|11 : tttttttccaactatatttgactgctatatatacgactgtatgtggtccagactacaataaaaatgtgtctagaacttgcacaattttttgttggtatcatcgtatgcagaATATGTACA-----TTTAGTAGCG-TTTGTCCCC----------AACTTTAT---TT---TACTGCAGTG-----TAT--------ACG-----ACTGTATGT-GG--C--CA--AGAT-TA---AG-ATAAA-TAA-TTAAAATATCTGGCTG----------------TGAAAT-------------TTTACGAT-T---TA-CATG-TTCATGG-T--TTATAATTC-ATAGGACGAATA--ACATAACTTATTGAAGA-CCCCTCGT
gi|12 : TCCTTGGTTGCAATATTGCGCTGGCATTCTTTCTATGAGACTCGAAAAAGAGAACTATTGTTTAATGT-CCTTGCTATTACTATAAACA
gi|13 : gaCCGACAC----------------TGAAAT-------------GTCACACT-TCTGTA-AACGATTCACGG-T--TTATAATTTTATGAGACGAATG--ACTTTACTCATTGAACG-TCCCTTGT
gi|14 : cATGCA--TTTGTTCAAT-TTT--AACCACTTTCATAATAT-TTTTCGGAGTCTGATTTGTATAAACCCATC----A---G--TCTGAAATA
gi|15 : gaaATA--ACATTACTTATTAAATGTCCCTTCGTc
gi|2 : atATA--ACACTACTTATTGACCA-CTCCTCGTgttgatgataaaataaaacaacaaatactttcttgatattattttttat
gi|2 : tTTTCGAAACATGTATGCAAAGTCTGTTTTGTGTCTATCCAAC----G---GACACTGAAATATCACACTTCCATTGGCGATGCTAGACCTGGGTCTGTCTTTGGTGGCCATAGTCTACTGCCATTCTTTCTATGGGGCTCACAATAGTGAGTTAATTTTTAATTTCTCTTGCTATTACCATAT-TATATAAA-AACC--------TGCGATTCACGTACTCCATTTGTGCAAGGC---GCATTTATACAGCTACTTA--AGATTACGGAATTT------T-TTT-TTTCTGG--------AACT---------------CGC--------------------ACG-----A-TGTGT-T-GGTAT--CATCGGATGCA---CA-ACAAATAAA-TC----TATCTGACTG----------------TGAAGT-------------TTTAAGAT-T---AA-GATG-TTCACGG-G--TCATAATTT-ATGGCACactggtgataaactaaaaacaatcaataatatcttgataccatttttcgaaacatgtatgcaaagtctgttttgtgtctatccaacggacactgaaatatcacacttccattggcgatgctagacctgggtctgtctttggtggccatagtctactgccattctttctatggggctcacaatagtgagttaatttttaatttctcttgctattaccatattatataaaaacctgcgattcacgtactccatttgtgcaaggcgcatttatacagctacttaagattacggaattttttttttctggaactcgcacgatgtgttggtatcatcggatgcacaacaaataaatctatctgactgtgaagttttaagattaagatgttcacgggtcataatttatggcactttacgccccttgtacatat
gi|3 : tacgaggagtggtcaataagtagtgttatactggtgataaactaaaaacaatcaataatatcttgataccattATGCAATCTTTTTCAATATTTTTAACAACTTCCGAAATATGTTTTCATAGTTTGTATTGTGTATACCCATC----A---AACACTGAAATGCAACACTTCTGTTAGCTATGCAAGACCTTCGTCTGTCTTTGGTGACAATATTTTGCTGC--TTTTTTCTATTTGGTTCGAAAAAGTGAACTAATATTTAATGT-TCCTGATATTACCAAATACATATAAA-AATC--------TGAGATGCACTTACTCTGCCTGTGCAACGCTGTGCACTCATGCAGCACCATATATGAACACA---TTTAGCAACT-CTT-TTTCA----------AACTATAT---TT---GATTGCAGTG-----TAT--------AAG-----ACTGTATGT-GG--T--CA--AGAG-TA---CC-ATAAA-AAG-TC----TATCTGACTG----------------TGAAAT-------------TTCTCGAC-T---TA-TATG-TTCACGG-T--TCATAATCT-ATGGGACGATTG--ACATTAGTTATTGAACG-CTCCTCGTtttacgccccttgtacatat
gi|4 : TATGTTCTCGTCGTCCGTTTAGTGTATACCCTTT----A---GACACTGAAATTTCACATTTCTGTTGGCGATGCAATACCTTCGCCTGTCTTTGGCAGCCATATTTTGCTGCCATTCTTTTTGT
gi|4 : T-TCTTTTTGTTACTATATACATATAAA-A-TA--------TGTGATGCACGTAC--CACTTGTGCAACAT---GCATTCATACA--T-----TTTGAGCACG---TTAAGGAGCT-CCT-TTTCC----------AA--ATG---------------AATA-----TAA--------ATG-----ACTTGATGT-GT--T--CA--ATAT-TT---TG-ATGAA-AAG-TT----T-TCTGtactatatacatataaaatatgtgatgcacgtaccacttgtgcaacatgcattcatacattttgagcacgttaaggagctccttttccaaatgaatataaatgacttgatgtgttcaatattttgatgaaaagttttctgcagccttttggtatcatcggatgcataacaaataaataataagttcacgatttatatgttcacggttaacattatttattgaacgcccc
gi|4 : tatgttctcgtcgtccgtttagtgtataccctttagacactgaaatttcacatttctgttggcgatgcaataccttcgcctgtctttggcagccatattttgctgccaAAG-------------TTCACGAT-T---TA-TATG-TTCACGG-T----------------------TA--ACATTATTTATTGAACG-CCCCcagccttttggtatcatcggatgcataacaaataaataataagttcacgatttatatgttcacggttaacattatttattgaacgcccc
gi|5 : tatgttctcgtcgtccgtttagtgtataccctttagacactgaaatttcacatttctgttggcgatgcaataccttcgcctgtctttggcagccatattttgctgccattctttttgttactatatacatataaaatatgtgatgcacgtaccacttgtgcaacatgcattcatacattttgagcacgttaaggagctccttttccaaatgaatataaatgacttgatgtgttcaatattttgatgaaaagttttctgcagccttttggtatcatcggatgcataacaaataaataatTACCACAATTCAGTTGGCGATGCAAGACAATCGTCTTTCTTTGATGGGCATATTTTG------------CTATTGGGCTCGAAATAGTGAACCAATGTTTAATTT-TCTTGCTATTACTATATACATATGAA-AATC--------TGCGATAAACGTGTTCTGCTCGTGCAACGC---GC--TTATACAGCTCCGTATATGAACACA---TTTACCAGTTACTT-TCTCC----------AACTGTAT---TT---GACTGAAGTG-----TAT--------ATT-----ACTGTATGC-AG--T--CA--AGAC-TA---CG-ATAAA-ATG-TT----T-TCTGA---------------------AACT-------------CACACGAA-T---TG-TTTG-TT
gi|6 : CCACATCTATATGAA-TATC--------TGTGATGCACATACTTTACTTGTACAACGC---CTACTCTTACAGCTCTGCATATGAACACA---TTTAGCAGCT-CTT-TTTCC----------AATTATAT---TT---AACTGCATTG-----TTA--------ACG-----ACTGTATGA-GG--T--CA--AGAC-TA---AG-TTAAA-AA--T-------TCTGA--A----------------AGAACT-------------TGCATGAT-T---Tagtatcatcggatacacaataaataa
gi|6 : A---CA-GCAAATAAA-TC----TGGCTGACTG----------------TGAAAT-------------TTCATGAT-T---TA-TATG-TTCACAG-T--TCATAATTT-ATGGGATGAATA--ACATTGCTTATTGAATG-CCCCgtttgtcagatgcacagcaaataaatctggctgactgtgaaatttcatgatttatatgttcacagttcataatttatgggatgaataacattgcttattgaatgccccc
gi|7 : ccacatctatatgaatatctgtgatgcacatactttacttgtacaacgcctactcttacagctctgcatatgaacacatttagcagctctttttccaattatatttaactgcattgttaacgactgtatgaggtcaagactaagttaaaaattctgaaagaacttgcatgatttgtttgtcagatgcACATGTAAATGATCGATATACTTGTGATGCGCGTGCTCCAATTGTACAACGC---ACGTTCACGTAGCTCCGTATTTGAAGACG---TTCAGCAGCT-TTT-AAGCC----------AACTATAT---TT---GACTGCAATG-----TAC--------ACG-----ACAATACGT-TA--C--CA--AGAC-TAGTGCA-ATTAA-AAG-TT----AATTTG-CTGGCATGATCGAATGCACTAAAATCTAAATGAGCATTTTCTCAATAT---AA-CATG-CTCACGG-T--TCGTAATCT-ATGGTCTGAGTA--CCATTATTTATGGAACG-TCCCTCGc
gi|8 : ATA--GCAATACTTACTGCATG-CCCCTCGT
gi|8 : tATACA--CTT-TTCAATCTTTTTAACAACTTATGAAATATGT---CAAGGTCTGTTTTGTTTATACCCACCCGATACCCGACACTGAAATGTCACACTTCTGTattggtaataaaataaaaacaagaaaaaatatctttgtaatatttggttcataccttcaaagtaatcttctaaaacagaaatacacttttcaatctttttaacaacttatgaaatatgtcaaggtctgttttgtttatacccacccgatacccgacactgaaatgtcacacttctgtaaac
gi|9 : tacgaggggcatgcagtaagtattgctatattggtaataaaataaaaacaagaaaaaatatctttgtaatatttggttcataccttcaaagtaatcttctaaaacagaaACTAT-T---TT---GACTGCAGTG-----TAC--------ACG-----ATTATATGT-GA--C--CA--AGAC-TA---AG-ATCAA-ATG-TC----C-TCTGA---------------------AAAT-------------CGAACGAT-T---Taaac
gi|9 : tAC-TA---CACATAAA-----TC----TATCTGACTG----------------TCGAAC-------------TTTTCGAA-A---TAACAT----------T--TCGTATTTT-ATTGGTTAAATA--ACATTATTTATTGAACG-CCCCTCcttttctggcttaatccaatgcactacacataaatctatctgactgtcgaacttttcgaaataacatttcgtattttattggttaaataacattatttattgaacgcccctc
blockSeqs : AT G A T C T T G CGATACCC TG C G A C T A GATATACT C A TGT A GGAA T A G GG A . . A . T . . TAT TC G GTGCA TAATTAAAATA CTGGCATGATCGAATGCAC CTAAATGAGCATT A CTG AC A A AA T A . T
blockSeqs : . T C T A T A A A TT C G T . . A . A G . A A C . . . T . . G . T . . T . . CAC TAAATCTA GTA . . . T . . A . G . .
blockSeqs : . . . . A C T T G TT C T A . . A . T A . T G G . . . A . . G . T . . C . . CA TAAATCTA CTG . . . C . . . . G . .
blockSeqs : A T T A AT . T T . . A . C G . A A C . . . A . . A . A . . T . . AG TAAATCTG CAC . . . C . . . . G . .
blockSeqs : . A A . . . A . T A . A A C . . . G . . G . T . . T . . CA AAGTCTA CTG . . . A . . . . G . .
blockSeqs : . . . T A . T G C . . . A . . T . A . . T . . CC AAGTTAA CTG . . . G . . . . G . .
blockSeqs : . . . . . . A . . A . C . . T . . TG AATGTG CTG . . . T . . . . G . .
blockSeqs : . . . A . . G . C . . C . . CG AAGTTT CTG . . . T . . . . A . .
blockSeqs : . . . . . . . . C . . AG ATGTTT A . . . T . . . . . . .
blockSeqs : . CA ATGTCC . . . . T . . . . . . .
blockSeqs : AG TCTA . . . . C . . . . . .
blockSeqs : AAT . . . . .
blockSeqs : . . .
blockSeqCons : TT ********** *** *** ***** T******** ***** T**** ** AAGTCTA****** CTG**************** **
originalCons : ATGCA--CTTGTTCAAT-TTTTTAACNACTTCCGAAATATGTTTTCGNAGTCTGTTTTGTGTATACCCATC----A---GACACTGAAATATCACACTTCTGTTGGCGATGCAAGACCTTCGTCTGTCTTTGGTGGCCATATTTTGCTGCCATTCTTTCTATCGGGCTCGAAATAGTGAACTAATGTTTAATTT-TCTTGCTATTACCATATACATATAAA-AATC--------TGCGATGCACGTACTCCGCTTGTGCAACGC---GCATTCATACAGCTCCGTATNTGAACACG---TTTAGCAGCT-CTT-TTTCC----------AACTATAT---TT---GACTGCAGTG-----TAT--------ACG-----ACTGTATGT-GG--T--CA--AGAC-TA---CG-ATAAA-AAG-TC----TATCTGACTG----------------TGAAAT-------------TTCACGAT-T---TA-CATG-TTCACGG-T--TCATAATTT-ATGGGACGAATA--ACATTACTTATTGAACG-CCCCTCGT
finalCons : ATGCA--CTTGTTCAAT-TTTTTAACNACTTCCGAAATATGTTTTCGNAGTCTGTTTTGTGTATACCCATC----A---GACACTGAAATATCACACTTCTGTTGGCGATGCAAGACCTTCGTCTGTCTTTGGTGGCCATATTTTGCTGCCATTCTTTCTATCGGGCTCGAAATAGTGAACTAATGTTTAATTT-TCTTGCTATTACCATATACATATAAA-AATC--------TGCGATGCACGTACTCCGCTTGTGCAACGC---GCATTCATACAGCTCCGTATNTGAACACG---TTTAGCAGCT-CTT-TTTCC----------AACTATAT---TT---GACTGCAGTG-----TAT--------ACG-----ACTGTATGT-GGT----CA--AGAC-TA---CG-ATAAAAAGTCTA------TCTGACTG----------------TGAAAT-------------TTCACGAT-T---TA-CATG-TTCACGG-T--TCATAATTT-ATGGGACGAATA--ACATTACTTATTGAACG-CCCCTCGT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TATTGATAATAACATGAAAACAAGAAGTTATAACCTGATGATATTTAATTCTTACCACCAAAGTAATCTTC
Alignments
lowQualScore : 11 2 11111111 22222222 111 2222222222 11111 111111111 11111 11 1111111111111 3333333333333333333 1111111111111
lowQualScore : 33 8 0 3 1 1 6 1 99999999 66 2 6 1 0 6 0 5 1 00000000 2 1 000 0 0 0 2 9999 1 4 4 5555555555 1 777 777 1 00000 666666666 00000 4 66666 11 7 666666 3333333333333 3333333333333333333 5555555555555 2 555 44 3 3 77 3 0 1 44 3
lowQualScore : .. . . . . . . . ........ .. . . . . . . . . ........ . . ... . . . . .... . . . .......... . ... ... . ..... ......... ..... . ..... .. . ...... ............. ................... ............. . ... .. . . .. . . . .. .
lowQualScore : 88 8 0 2 0 4 0 0 33333333 66 5 4 4 6 7 1 7 4 77777777 7 4 000 1 7 7 8 9999 4 4 4 6666666666 5 000 000 4 00000 111111111 00000 0 55555 00 3 666666 6666666666666 2222222222222222222 7777777777777 9 000 22 3 3 99 3 2 2 22 3
consensus : ATGCA--CTTGTTCAAT-TTTTTAACNACTTCCGAAATATGTTTTCGNAGTCTGTTTTGTGTATACCCATC----A---GACACTGAAATATCACACTTCTGTTGGCGATGCAAGACCTTCGTCTGTCTTTGGTGGCCATATTTTGCTGCCATTCTTTCTATCGGGCTCGAAATAGTGAACTAATGTTTAATTT-TCTTGCTATTACCATATACATATAAA-AATC--------TGCGATGCACGTACTCCGCTTGTGCAACGC---GCATTCATACAGCTCCGTATNTGAACACG---TTTAGCAGCT-CTT-TTTCC----------AACTATAT---TT---GACTGCAGTG-----TAT--------ACG-----ACTGTATGT-GG--T--CA--AGAC-TA---CG-ATAAA-AAG-TC----TATCTGACTG----------------TGAAAT-------------TTCACGAT-T---TA-CATG-TTCACGG-T--TCATAATTT-ATGGGACGAATA--ACATTACTTATTGAACG-CCCCTCGT
Reference ( family-2788 ) : ATGCA--CTTGTTCAAT-TTTTTAACNACTTCCGAAATATGTTTTCGNAGTCTGTTTTGTGTATACCCATC----A---GACACTGAAATATCACACTTCTGTTGGCGATGCAAGACCTTCGTCTGTCTTTGGTGGCCATATTTTGCTGCCATTCTTTCTATCGGGCTCGAAATAGTGAACTAATGTTTAATTT-TCTTGCTATTACCATATACATATAAA-AATC--------TGCGATGCACGTACTCCGCTTGTGCAACGC---GCATTCATACAGCTCCGTATNTGAACACG---TTTAGCAGCT-CTT-TTTCC----------AACTATAT---TT---GACTGCAGTG-----TAT--------ACG-----ACTGTATGT-GG--T--CA--AGAC-TA---CG-ATAAA-AAG-TC----TATCTGACTG----------------TGAAAT-------------TTCACGAT-T---TA-CATG-TTCACGG-T--TCATAATTT-ATGGGACGAATA--ACATTACTTATTGAACG-CCCCTCGT
gi|1 : G-T--TTGCATTTT-ATC--ACAAATACGACAATACTTATTGAACG-CCCTTTGT
gi|1 : gaaacgtatgtttgaacttttatgcatattgttataaggaatgaatgtttttgatgaatattaatgagataagaactaaaagaagcacatacaaagtaaacgaactcagaaatggttcacatatagtttgcttgttgcatgtaagttcttacctcatcactatttaatatATGCG--CTTGTTCCGT-CTTTTAACCATTTCCAGAATATGTCCTCGTAGTCTGTTTTGTGCATACCCTTC----A---GAGATTGAAATATCACATTTCTGTTAGAACTAAATGACC---GTCTGTCTTTGATGGCCTTAGTTTACTTCCATTCTTTCTATCGTGTTTGAAATTGTGAACTAATGTTTAATTT-TCATTCTATTACTATATACATATAAC-ACTC--------TGTGATACACGTACTTCACTTGTCCAACAT---GCATTCGTACATCTCCGTATTTGAGCAAA---TTTAGAAGCT-CTT-TTTCCTTCTATAACTGACTGTATGTGTTCAAGACTTCGATGAAACATATTGTGGGAAACGCATGCATCGTGTGTTGG--TATCATCGGATGTA---CA-ACAAA-AAACTT----TATATAA--A----------------TGAAAT-------------TTCACGAT-T---TT-CATG-ATCACGG-T--TCATAATTT-ATAGGAC-AATA--ACAATACATATTGAACG-CCCTTCGaacaagatactatcttgataatatttggtttatatttataaagtaatctcctttaatagatatgcgcttgttccgtcttttaaccatttccagaatatgtcctcgtagtctgttttgtgcatacccttcagagattgaaatatcacatttctgttagaactaaatgaccgtctgtctttgatggccttagtttacttccattctttctatcgtgtttgaaattgtgaactaatgtttaattttcattctattactatatacatataacactctgtgatacacgtacttcacttgtccaacatgcattcgtacatctccgtatttgagcaaatttagaagctctttttccttctataactgactgtatgtgttcaagacttcgatgaaacatattgtgggaaacgcatgcatcgtgtgttggtatcatcggatgtacaacaaaaaactttatataaatgaaatttcacgattttcatgatcacggttcataatttataggacaataacaatacatattgaacgcccttcg
gi|10 : gaaacgtatgtttgaacttttatgcatattgttataaggaatgaatgtttttgatgaatattaatgagataagaactaaaagaagcacatacaaagtaaacgaactcagaaatggttcacatatagtttgcttgttgcatgtaagttcttacctcatcactatttaatatacaaagggcgttcaataagtattgtcgtatttgtgataaaatgcaaacaacaagatactatcttgataatatttggtttatatttataaagtaatctcctttaatagatT-TTT-TTTCC----------AACTATAT---TT---GACTGCTATA-----TAT--------ACG-----ACTGTATGT-GG--T--CC--AGAC-TA---CA-ATAAA-AA--TG----TGTCTA---------------------GAACT-------------TGCACAAT-T---T--TTTG-TT---GG-TA-TCATCGTAT-GCAGAACAAATA--A
gi|10 : -ACAAATAAA-TC----TATCTGAGTA----------------TGACAT-------------TTTACAAT-T---TA-CTTG-TTCATGGATAATAATAATTT-ATGGGACGatctatctgagtatgacattttacaatttacttgttcatggataataataatttatgggacg
gi|11 : tttttttccaactatatttgactgctatatatacgactgtatgtggtccagactacaataaaaatgtgtctagaacttgcacaattttttgttggtatcatcgtatgcagaATATGTACA-----TTTAGTAGCG-TTTGTCCCC----------AACTTTAT---TT---TACTGCAGTG-----TAT--------ACG-----ACTGTATGT-GG--C--CA--AGAT-TA---AG-ATAAA-TAA-TTAAAATATCTGGCTG----------------TGAAAT-------------TTTACGAT-T---TA-CATG-TTCATGG-T--TTATAATTC-ATAGGACGAATA--ACATAACTTATTGAAGA-CCCCTCGT
gi|12 : TCCTTGGTTGCAATATTGCGCTGGCATTCTTTCTATGAGACTCGAAAAAGAGAACTATTGTTTAATGT-CCTTGCTATTACTATAAACA
gi|13 : gaCCGACAC----------------TGAAAT-------------GTCACACT-TCTGTA-AACGATTCACGG-T--TTATAATTTTATGAGACGAATG--ACTTTACTCATTGAACG-TCCCTTGT
gi|14 : cATGCA--TTTGTTCAAT-TTT--AACCACTTTCATAATAT-TTTTCGGAGTCTGATTTGTATAAACCCATC----A---G--TCTGAAATA
gi|15 : gaaATA--ACATTACTTATTAAATGTCCCTTCGTc
gi|2 : atATA--ACACTACTTATTGACCA-CTCCTCGTgttgatgataaaataaaacaacaaatactttcttgatattattttttat
gi|2 : tTTTCGAAACATGTATGCAAAGTCTGTTTTGTGTCTATCCAAC----G---GACACTGAAATATCACACTTCCATTGGCGATGCTAGACCTGGGTCTGTCTTTGGTGGCCATAGTCTACTGCCATTCTTTCTATGGGGCTCACAATAGTGAGTTAATTTTTAATTTCTCTTGCTATTACCATAT-TATATAAA-AACC--------TGCGATTCACGTACTCCATTTGTGCAAGGC---GCATTTATACAGCTACTTA--AGATTACGGAATTT------T-TTT-TTTCTGG--------AACT---------------CGC--------------------ACG-----A-TGTGT-T-GGTAT--CATCGGATGCA---CA-ACAAATAAA-TC----TATCTGACTG----------------TGAAGT-------------TTTAAGAT-T---AA-GATG-TTCACGG-G--TCATAATTT-ATGGCACactggtgataaactaaaaacaatcaataatatcttgataccatttttcgaaacatgtatgcaaagtctgttttgtgtctatccaacggacactgaaatatcacacttccattggcgatgctagacctgggtctgtctttggtggccatagtctactgccattctttctatggggctcacaatagtgagttaatttttaatttctcttgctattaccatattatataaaaacctgcgattcacgtactccatttgtgcaaggcgcatttatacagctacttaagattacggaattttttttttctggaactcgcacgatgtgttggtatcatcggatgcacaacaaataaatctatctgactgtgaagttttaagattaagatgttcacgggtcataatttatggcactttacgccccttgtacatat
gi|3 : tacgaggagtggtcaataagtagtgttatactggtgataaactaaaaacaatcaataatatcttgataccattATGCAATCTTTTTCAATATTTTTAACAACTTCCGAAATATGTTTTCATAGTTTGTATTGTGTATACCCATC----A---AACACTGAAATGCAACACTTCTGTTAGCTATGCAAGACCTTCGTCTGTCTTTGGTGACAATATTTTGCTGC--TTTTTTCTATTTGGTTCGAAAAAGTGAACTAATATTTAATGT-TCCTGATATTACCAAATACATATAAA-AATC--------TGAGATGCACTTACTCTGCCTGTGCAACGCTGTGCACTCATGCAGCACCATATATGAACACA---TTTAGCAACT-CTT-TTTCA----------AACTATAT---TT---GATTGCAGTG-----TAT--------AAG-----ACTGTATGT-GG--T--CA--AGAG-TA---CC-ATAAA-AAG-TC----TATCTGACTG----------------TGAAAT-------------TTCTCGAC-T---TA-TATG-TTCACGG-T--TCATAATCT-ATGGGACGATTG--ACATTAGTTATTGAACG-CTCCTCGTtttacgccccttgtacatat
gi|4 : TATGTTCTCGTCGTCCGTTTAGTGTATACCCTTT----A---GACACTGAAATTTCACATTTCTGTTGGCGATGCAATACCTTCGCCTGTCTTTGGCAGCCATATTTTGCTGCCATTCTTTTTGT
gi|4 : T-TCTTTTTGTTACTATATACATATAAA-A-TA--------TGTGATGCACGTAC--CACTTGTGCAACAT---GCATTCATACA--T-----TTTGAGCACG---TTAAGGAGCT-CCT-TTTCC----------AA--ATG---------------AATA-----TAA--------ATG-----ACTTGATGT-GT--T--CA--ATAT-TT---TG-ATGAA-AAG-TT----T-TCTGtactatatacatataaaatatgtgatgcacgtaccacttgtgcaacatgcattcatacattttgagcacgttaaggagctccttttccaaatgaatataaatgacttgatgtgttcaatattttgatgaaaagttttctgcagccttttggtatcatcggatgcataacaaataaataataagttcacgatttatatgttcacggttaacattatttattgaacgcccc
gi|4 : tatgttctcgtcgtccgtttagtgtataccctttagacactgaaatttcacatttctgttggcgatgcaataccttcgcctgtctttggcagccatattttgctgccaAAG-------------TTCACGAT-T---TA-TATG-TTCACGG-T----------------------TA--ACATTATTTATTGAACG-CCCCcagccttttggtatcatcggatgcataacaaataaataataagttcacgatttatatgttcacggttaacattatttattgaacgcccc
gi|5 : tatgttctcgtcgtccgtttagtgtataccctttagacactgaaatttcacatttctgttggcgatgcaataccttcgcctgtctttggcagccatattttgctgccattctttttgttactatatacatataaaatatgtgatgcacgtaccacttgtgcaacatgcattcatacattttgagcacgttaaggagctccttttccaaatgaatataaatgacttgatgtgttcaatattttgatgaaaagttttctgcagccttttggtatcatcggatgcataacaaataaataatTACCACAATTCAGTTGGCGATGCAAGACAATCGTCTTTCTTTGATGGGCATATTTTG------------CTATTGGGCTCGAAATAGTGAACCAATGTTTAATTT-TCTTGCTATTACTATATACATATGAA-AATC--------TGCGATAAACGTGTTCTGCTCGTGCAACGC---GC--TTATACAGCTCCGTATATGAACACA---TTTACCAGTTACTT-TCTCC----------AACTGTAT---TT---GACTGAAGTG-----TAT--------ATT-----ACTGTATGC-AG--T--CA--AGAC-TA---CG-ATAAA-ATG-TT----T-TCTGA---------------------AACT-------------CACACGAA-T---TG-TTTG-TT
gi|6 : CCACATCTATATGAA-TATC--------TGTGATGCACATACTTTACTTGTACAACGC---CTACTCTTACAGCTCTGCATATGAACACA---TTTAGCAGCT-CTT-TTTCC----------AATTATAT---TT---AACTGCATTG-----TTA--------ACG-----ACTGTATGA-GG--T--CA--AGAC-TA---AG-TTAAA-AA--T-------TCTGA--A----------------AGAACT-------------TGCATGAT-T---Tagtatcatcggatacacaataaataa
gi|6 : A---CA-GCAAATAAA-TC----TGGCTGACTG----------------TGAAAT-------------TTCATGAT-T---TA-TATG-TTCACAG-T--TCATAATTT-ATGGGATGAATA--ACATTGCTTATTGAATG-CCCCgtttgtcagatgcacagcaaataaatctggctgactgtgaaatttcatgatttatatgttcacagttcataatttatgggatgaataacattgcttattgaatgccccc
gi|7 : ccacatctatatgaatatctgtgatgcacatactttacttgtacaacgcctactcttacagctctgcatatgaacacatttagcagctctttttccaattatatttaactgcattgttaacgactgtatgaggtcaagactaagttaaaaattctgaaagaacttgcatgatttgtttgtcagatgcACATGTAAATGATCGATATACTTGTGATGCGCGTGCTCCAATTGTACAACGC---ACGTTCACGTAGCTCCGTATTTGAAGACG---TTCAGCAGCT-TTT-AAGCC----------AACTATAT---TT---GACTGCAATG-----TAC--------ACG-----ACAATACGT-TA--C--CA--AGAC-TAGTGCA-ATTAA-AAG-TT----AATTTG-CTGGCATGATCGAATGCACTAAAATCTAAATGAGCATTTTCTCAATAT---AA-CATG-CTCACGG-T--TCGTAATCT-ATGGTCTGAGTA--CCATTATTTATGGAACG-TCCCTCGc
gi|8 : ATA--GCAATACTTACTGCATG-CCCCTCGT
gi|8 : tATACA--CTT-TTCAATCTTTTTAACAACTTATGAAATATGT---CAAGGTCTGTTTTGTTTATACCCACCCGATACCCGACACTGAAATGTCACACTTCTGTattggtaataaaataaaaacaagaaaaaatatctttgtaatatttggttcataccttcaaagtaatcttctaaaacagaaatacacttttcaatctttttaacaacttatgaaatatgtcaaggtctgttttgtttatacccacccgatacccgacactgaaatgtcacacttctgtaaac
gi|9 : tacgaggggcatgcagtaagtattgctatattggtaataaaataaaaacaagaaaaaatatctttgtaatatttggttcataccttcaaagtaatcttctaaaacagaaACTAT-T---TT---GACTGCAGTG-----TAC--------ACG-----ATTATATGT-GA--C--CA--AGAC-TA---AG-ATCAA-ATG-TC----C-TCTGA---------------------AAAT-------------CGAACGAT-T---Taaac
gi|9 : tAC-TA---CACATAAA-----TC----TATCTGACTG----------------TCGAAC-------------TTTTCGAA-A---TAACAT----------T--TCGTATTTT-ATTGGTTAAATA--ACATTATTTATTGAACG-CCCCTCcttttctggcttaatccaatgcactacacataaatctatctgactgtcgaacttttcgaaataacatttcgtattttattggttaaataacattatttattgaacgcccctc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TATTGATAATAACATGAAAACAAGAAGTTATAACCTGATGATATTTAATTCTTACCACCAAAGTAATCTTC