lowQualScore : 1 3333333 1 33333 2222 7777777777777777777777777777777777 111 111 22 1111 2 77777777777777777777 222 11 1 33333333333 11 1111 66666666666666666666666666666666666666 11 222222 111 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 111 777777777777777777777777777777777777777777
lowQualScore : 7 5555555 99 6 66666 1111 4444444444444444444444444444444444 99 222 111 55 33 8888 1 2 3 9999999 777 0 99 4 3 22222222222222222222 7 3 3 0 666 4 5 22 1 5 6 6 88888888888 1 9 55 0 3 5 4 3 6 5 88 2222 99 00000000000000000000000000000000000000 55 0 1 999999 333 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 444 4 111111111111111111111111111111111111111111 6 6
lowQualScore : . ....... .. . ..... .... .................................. .. ... ... .. .. .... . . . ....... ... . .. . . .................... . . . . ... . . .. . . . . ........... . . .. . . . . . . . .. .... .. ...................................... .. . . ...... ... ........................................................................................................... ... . .......................................... . .
lowQualScore : 0 2222222 22 2 77777 8888 5555555555555555555555555555555555 22 777 777 77 55 5555 0 8 5 0000000 888 5 22 8 7 88888888888888888888 8 2 2 2 555 0 0 99 0 7 5 7 66666666666 4 9 77 4 4 0 0 0 0 4 77 1111 33 33333333333333333333333333333333333333 77 4 6 888888 111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 666 0 333333333333333333333333333333333333333333 0 0
consensus : TTAAAGGGA-----GTAT--ATCAGGAAAAAACGCTTATAAATGTCT-T--AAAAT----------ATAAAATTA-TTTTGAAAA-N--GAT--AAAAAGCATCCCATTATCATTAATAAAATAA-A--TCCGAATGGTTTGGTATGTCAA-ATCCACCAAAACGTGACAAAATCG--ATATTTAAATTGGAGTG----AA---ACTT------GAAACGAAATCCNCATTCTAAAAATAGACAT--NACNTA-ANNACGGAT-CAAA-TTGAAATCAAAA-CGAAATC--ACGCGACTCATTTNATACGTCACAAAATATGTTGCAATTTTAA-GCGGGAAATCTATTTTAGTCTAACCTNGGCGCGTAGCCCAA-GTTAGGA----AA-TCCC----TNT---T-CAATATA-----------------TTAT--TTTGGCATGTTTAAATAGATATCCATTT--GGCAATACGGGGTCAGTGA--------------GTATATA---TAGGCA----C---GA-TATAT-------TGG-A-A----AAAAAT-ATN---TT---GG---CCAATTTTAA---NAT----TTTGAAAAATCCTGATA-A-ATTNC--------------CTTTAA----TTGAAGGTGCAATACCCTTTTCCAACACT
Reference ( gi|3 ) : TTTAAGGGA-----TCAT--ATCAGGGAAAAACGCTTATGAATGTCT-C--AAAAT----------ATGAAATTA-TTATAAAGA-A--GAT--AAATAGCATCTCATTATCATTAATAAGATAA-A--TCCAAATGGTTTGATATGTCAA-ATTCACCAAAACATGACATAATCG--ATATTTGAATTGGAGTGC--AAA---ACTC------GAAACGAAGTCCCCATTCTAAAAATAGACAT--CACATA-ATTACGGAT-CATA-TTGAAATCAAAA-TGTAATG--GCGTGACTCATTTGATACTTCACAAAATATGTTGCAATTTTAA-GCGGGAAATCTATTTTAGTCTAACCTAGGCGCGTAACTCAA-GTTAGGA----AA-TCCT----TGT---T-CAATCTA-----------------ATAT--TTTGGCATGTTTAAATAGATATCCGTTA--GGCAATGCAGGGTCAGTGA--------------GTATATA---TAGGGA----C---GA-TATAT-------TGG-ATA----AAAAAT-ATG---TT---AG---CCAATTTCAA---TTT----TTTGAAAAATCCTGATA-A-ATTCC--------------CTTTAA----CTGAAA-TGCAAT---CTTTTTCAATATTTTTAACAACTTCCGAAATATGTTTTCATAGTTTGTATT
gi|4 : TTAAAGGAA-----AAAT--ATCATG-AAAATTGCA-ATAAATGTCT-T--AAAAA----------GTAAAATTA-GTATTAA-A-ATTGAT--AAAAAGCATCCCATTATCATAAATA-GATAAGA--CCCGAATGGTTTGGTTTATTAA-GTCCACCAAA-CGTGACAGAAACG--ATGTTTCAGTCGGAGTGATGAAATTGACTCTAAGATGAAACAAATTTTCCAACATAAAAA----CCT---GTATA-A---CGGAT-TTAA-TTAAAATCAAAA-TAAAATC--CCGTGACAAATTTAATACGTCACAAAAAAT-TTGCCATTTTAA-GCGGGAAATACATTCTAGTCTTACTTCGGTGCGTAGCCCGA-GTTTGGA----AA--CCT----T-T---T-TAACATA-----------------TTAG--TTTGGCATGTT-------------------GG--------GGTCAATGA--------------GTTTAT---------------------TATAT-------AGG--------AAAAATGATT---TT---GG---TCAATTTTAA---AAT----TTTGAAAAACCCTGATA-T-ATTTC--------------CCT
gi|2 : TTAAAGGGA-----GTAT--ATCAGACAAAAACGCTC-TAACTGTCT-TTAAAAAT----------ATATATTTT-TTTTAAA-A-T--GGTTAAAATA-CATCTCATTATCATTGATAA-ATAA-AA-TCCGAATGACTTAGTATGTAAA-ATCCACCAAAATGTGACAACATTG--ATATTTAAATTGGAGTGG--TAA---TCTT------GAAACGAAATCCACATTCTAAAAATAGACAT--AACTTA-A
gi|10 : AATGGA-----GTAT--ATCAGGGAAAAACGC-TATAAATGTCTAT--AAAATGTCTAAAGAAATAAAATTATTTTTAAAAA-T--GAC--ATAAAGCATCCAATTATGATTAATAAATTAA-A--TTGTAATTGTTTGGTATG-------TCGCC-AAACATGACAAACTTGATATATTTGAATT---GT-----AA---ACTT------GAAACGAAATCCTCATTCTAAAGATAGACAG--TACTTA-AATACTGAT-aaactacaagacggcatcattattcttactctttctaagattaactagtgtttactagttgtaaacttgtataactaatcaaaattgaaatcaaaatgaaatcacgtgactcatttaatacgtcacaaaatatgttgcaatttaagcagggaatcaattttagttttacctaggcgcgtagcccaattaggaaatcccttttcaatacattattttggcatttttaaatatatgttcttttggcaataacgcgtaagtgagtataagtggtttattgggaaggaaatgctcaaagccaattttaaaagttttaaaaatcctgataaattggcttt
gi|12 : aAAGAGA-----GTAT--ATCAAT-AAAAAC--------ATGTCT-T--AAAA-----------ATTAAATTATTTTTGAAAT-G--GAT--AAAAAACAT---ATCATC-TTCATA----AA-G--TCCGAAAGGTTTGGAATGTTGA-AACCATTAAA--ATGACAAAATCA--ATATTTAAATTAGAGTG------------------------GTAATCCAGATTCTAAAAAtgaagacattcacatcatcat
gi|9 : taAAGGGAATGTATCATCTATCAAGATAAAACGCTT-TTAATGTCT-T--AAA------------------------------A-A--AAT--AAAT---------TTAT--TTA-TAAAATGG-G--TAAAAACATTACAATATATCACTATCTAGCAAAACGTGGCAAACTCG--ATATTTAAAATGTAGTAT--CCA---ACTT------GAAATGAAAACCCAATTCTAAAAATAAAAATAGCACTTA-AATACa
gi|5 : taa--ATCAGGAAAAAATGCT-ATAATCACCT-T--AAAAT----------AT--AATTA-TTTTGAAAATG--GAT--AAAAAGCACCTTATTTTCATTAATAA-ATAA-AATTGCAAATGGTTTGGTATGTCAA-ATAAACCAAAATGTGAAA-AATCG--ATATATAAACTAGAGTtgcttgacaatctttaggactctttctaagatgaaacaatttttactacacttgaaagttatcagt
gi|6 : tattaaagagagtatatcactagaACATGTATGACGGATACA-A-CTGAAATCAAAA-TGAAATA--ACGTGACTCATTTAATACGTCACAAATTATGTTGCCATTATAAAGCAAGAAATCTATTTTAGTCTAATCTAGGAGCGTAGCCCAA-ATAAGGA----AA-GCCC----TTT---T-AAATATA-----------------TTAT--TTTTGCATGTTNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTA-ATA---CGGGGT----CAGTGAGTATATAATGCCATGGTATATTGGAAAAAA-ATA---TTTA-AG---TCAA-----------T----TTTGAAAAATCCTGATA-T-ATTagacagcacttaaatactgcttgatgaccttcaaatcaccacacaaacaattttaactatgtgtaaacctgtataacagattatataaataaaaaacgaaatcacgtgattcattttatacgtaacaaagtatactgcaatcttaagcaggaaatctatttaagtctatccttggcgcatagcacaattttaggaaatcccgttacaatatattatttcggaatgttttaatagatatccatttggcaatatggggtc
gi|2 : taaacaatttttactacgtttaaATA-ACTA---AT-CAAAATTGAAATCAAAA-TGAAATC--ACGTGACTCATTTAATACGTCACAAAATATGTTGCAA-TTTAA-GCAGGGAATCAATTTTAGTTTTACCTAGGCGCGTAGCCCAA--TTAGGA----AA-TCCC----TTT---T-CAATACA-----------------TTAT--TTTGGCATTTTTAAATATATGTTCTTTT--GGCAATAACGCGTAAGTGA--------------GTATA------AG-------T---GG-TTTAT-------TGG-G-A----AGGAA--ATG---CTCAAAG---CCAATTTTAAAAGTTT----T---AAAAATCCTGATA-A-ATTGG--------------CTTTttattttagtcataaagatgttactgagggtgtaagtgatgcagattttattttgtctgtacattaa
gi|8 : ttaaagggagtatatcagacaaaaacgctctaactgtctttaaaaatatatattttttttaaaatggttaaaatacatctcattatcattgataaataaaatccgaatgacttagtatgtaaaatccaccaaaatgtgacaacattgatatttaaattggagtggtaatcttgaaacgaaatccacattctaaaaatagacataacttaaaaactacaagacggcatcattattcttactctttctaagattaactagtgtttactagttgtaaacttgt-ATAACGGAT-CAAA-TTGAAATCA--------------CGCAACTCATTTTATAAGTCACAAAATGTGTTGCACTTTTAA-ACGGGAAATCTATTTTAATCTAACCCTGA-ATGTAGCTCAA-GTTAGGA----AA-TCCC----TAT---T-CAATATA-----------------TTAT--TTTGGCATGTTTAAATAGATATTCATTT--TGTAATTCAGGGTCAGTGA--------------GTATATA---TGGACA----T---GA-TATAT-------TAG--------AAAAAT-ATGTTTTT---AG---CAAATTTTAA---AAG----ATTGAACAATTCTGATA-A-AATCC--------------CTTAAA----
gi|5 : -ATAACAGAT-TATA-T--AAATAAAAAACGAAATC--ACGTGATTCATTTTATACGTAACAAAGTATACTGCAATCTTAA-GCAGGAAATCTATTTAAGTCTATCCTTGGCGCATAGCACAATTTTAGGA----AA-TCC-----CGT---TACAATATA-----------------TTAT--TTCGGAATGTTTTAATAGATATCCATTT--GGCAATATGGGGTCatat
gi|1 : tattaaagagagtatatcactagaatcaggaaaaaatgctataatcaccttaaaatataattattttgaaaatggataaaaagcaccttattttcattaataaataaaattgcaaatggtttggtatgtcaaataaaccaaaatgtgaaaaatcgatatataaactagagtagacagcacttaaatactgcttgatgaccttcaaatcaccacacaaacaattttaactatgtgtaaacctgtAT-CAAA-TTGAAATCAAAA-TGAAATG-----CGACTC-TTTTATG--TCA-ATAA-ATGTTTCAATTC-AA-GCAGGAAATCTATTTCAGTCTAACCTGGGCACGTAGGCCAA-GTTAGGAATTTAA-CCCGGGCATGTAGGC-CAAGCTAGGAATAACCTTATCAGTATATTATTTCATATGTTTGAATAGATATCC--TAATGACAGTACAGGACCAGGTA--------------ATATAAA---TCGGAA----T---CA-TATTG-------TGG-AAA----AAAAAT-GTT---TT---GGGGACCAA-----------T----TTTAAAAAACCCTGATATA-GTTGCATTGTTGTAGATAACTTTAAACGTTTAAAAGTGCAATACCCTTTTCCAA
gi|7 : ttttcataaaaaaatgttttaaatgttcaacaaatgaaatttattcatcaaagacagtatatcaggaaaaattgcttaattgtctaaaaattcgttttaaaattcgataaaaaaggatctcatttgcatgaagatgtaaaaacaatatttcaatttaagtcggaggaaattgaaacaaaatttctaactctaaaaatagatagcacactaatactgcttaatgacctttacctcatcattcggactttttctaagatggaaataaattctacaatatgtagcctatttgatgtATCAAAA-C--AATTTCACGTGA----TTTAATACGTCACCAAATAATTGGCACTTTTAA-GAGGGGAATCTTCTTTAATATGACCTAGGCGCGTAGCCAAA-GTTAGGA----AACTCCT----T-T---T-AAAT--------------------ATATTGTTTGGTTTGTTTAAATAGATATACATTT--GACAATACGGAGTCAGTGA--------------GTATATA---TAGCCA----T---AA-TATTT-------TG----A----AAAAATGATT---TT---TG-------TTTTAT---TATAAAATTTGAAAAATCCTGATC-A-ATTTC--------------CTTTAA----
gi|13 : atgaactctaactattacgaaaccatttaactacctataaacctatatagctaattaaaatttctATAAAATATATTGCACTTTTGA-TAAGGAAACTTATTTTAATCTAAatatgacaagaaatgttatattaatatgattatatgtaatccggacagttaccgttattttgtggatattt
gi|11 : actcaacttttttgattggatTAGCCTGGTTAAATAGGTATCC-TTAC-GGCAATATGTGGCCAGTGA--------------GTATATAATATAGGCATAATC---GA-TAAAT-------TTG-A------AAACAT-GTT---TT---GG---TCAATATCAA---AGT----TTTGAAAAATCCCGATA-T-ACTTC--------------CTT--------TGAAG-T-CA-------TTTTCAACAC
gi|15 : agtttagac---GA-TATAT-------TTG-AAA----AAGAA----A---TT---AA---C----TTAAA---TTT----TTTGAAAAATCCTGATATATATTCC--------------CTTTAgagtatcaaaaatttatataagatttccagctttattg
gi|16 : ----AAAAAT-AC-----T---GG---TCAATCTTAA---AAT----TTTGAAAAATCCTGATA-
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): ACATTTTATAAGCGATAAATCTGGACGATATGTCACGGGTACTCCATTTTTTTGAAAATAGTT
Unaligned ( gi|17 ): ATTTTTATCATGAACATGAAATATCACATAAAAAA
Alignments
lowQualScore : 11111 222222222 22222 33333333333333333 11 1111 1111 1111 555555555555555555555555555555555 111111 111 22222222 11111111 22222222222 2222222222222222 1111111111111111 111 33333333333333 2222222 11 33333
lowQualScore : 66 22222 000000000 33 99999 6 8888 33333333333333333 5 77 3333 5 5 0 888 0 0000 5 0 0000 0 77 1 1 77 1 555555555555555555555555555555555 0 666666 1 11 5 111 5 66666666 1 8 22 5 3 88 2 0 2 1 66666666 11111111111 3 0 9999 4 777 1 1 66 5 5 1 0 0 0 5 0 5555555555555555 777 4 0000000000000000 777 222 1 00000000000000 8888888 77 2 55555 0
lowQualScore : .. ..... ......... .. ..... . .... ................. . .. .... . . . ... . .... . . .... . .. . . .. . ................................. . ...... . .. . ... . ........ . . .. . . .. . . . . ........ ........... . . .... . ... . . .. . . . . . . . . ................ ... . ................ ... ... . .............. ....... .. . ..... .
lowQualScore : 99 55555 000000000 66 44444 6 0000 00000000000000000 0 44 5555 0 0 4 111 1 6666 5 1 1111 4 11 4 7 99 7 777777777777777777777777777777777 4 444444 7 77 7 777 2 88888888 0 9 00 0 0 11 5 7 0 0 11111111 11111111111 7 7 4444 4 888 0 4 44 0 2 0 4 1 2 6 5 6666666666666666 000 0 0000000000000000 000 111 0 66666666666666 7777777 00 5 00000 7
consensus : TTAAAGGGA--GTAT-----ATCA---------GGAAAAAACGCTT---ATAAATGTCT-T--AAAAT----------ATAAAATTATT-TT-AAAAA--NG-AT-AAAAAGCATCTCATTATCATTAA----TAAAATAA-A--TCCGAATGGTTTGGTATGTCGA-ATCCACCAAAACGTGACAAAATCG--ATATTTAAATTGGAGTG--A--A----ACTTG------AA---------ACGA------AATCCNCATTCT-AAAAAT---AGACAT--N-----ACTTA-ATAACGGATCAAA-TTGAAATCAAAA-CGAAATCACGCGACTCATTTNAT--------ACGT-----------CACAAAATATGTTGCAATTT----TAA-GCGGGAAATCTATTTTAG---TCTAACCTNGGCGCGTAGCCCAA-GTTAGGAA-ATCCCTTTTCAATATATTATTTTGGCATGTTTAAATAGATATCCNTTTGGCAATACGGGGTCAGTGAGTATATA---TAGGCA----TGATATATTGG-A-AAAA-AAT-A-TTTT---GG---CCAATTTTAAAATTTTGAAAAATCCTGATA-A-ATTCC--------------CTTTAA----T--TGAAGATGCAAT---CTTTTTCAACACT
Reference ( family-1473 ) : TTAAAGGGA--GTAT-----ATCA---------GGAAAAAACGCTT---ATAAATGTCT-T--AAAAT----------ATAAAATTATT-TT-GAAAA--NG-AT-AAAAAGCATCCCATTATCATTAA----TAAAATAA-A--TCCGAATGGTTTGGTATGTCAA-ATCCACCAAAACGTGACAAAATCG--ATATTTAAATTGGAGTG--A--A----ACTTG------AA---------ACGA------AATCCNCATTCT-AAAAAT---AGACAT--N-----ACNTA-ANNACGGATCAAA-TTGAAATCAAAA-CGAAATCACGCGACTCATTTNAT--------ACGT-----------CACAAAATATGTTGCAATTT----TAA-GCGGGAAATCTATTTTAG---TCTAACCTNGGCGCGTAGCCCAA-GTTAGGAA-ATCCCTNTTCAATATATTATTTTGGCATGTTTAAATAGATATCCATTTGGCAATACGGGGTCAGTGAGTATATA---TAGGCA----CGATATATTGG-A-AAAA-AAT-A-TNTT---GG---CCAATTTTAANATTTTGAAAAATCCTGATA-A-ATTNC--------------CTTTAA----T--TGAAGGTGCAATACCCTTTTCCAACACT
gi|1 : TCAAAGACA--GTAT-----ATCA---------GGAAAAATTGCT-----TAATTGTCT-A--AAAAT----------------TCGTT-TT--AAAATTCG-ATAAAAAAGGATCTCATTTGCATGAAGATGTAAAA
gi|1 : ttttcataaaaaaatgttttaaatgttcaacaaatgaaatttattcaATCAAA-TTGAAATCAAAA-TGAAAT---GCGACTC-TTTTATGTCAATAAATGTTTCAATTCAAGCAGGAAATCTATTTCAGTCTAACCTGG-GCACGTAGGCCAAGTTAGGAATTTAACCCGGGCATGTAGGCCAA-GCTAGGAATAACCTTAT-CAGTATATTATTTCA-TATGTTTGAATAGATATCCTAATGACAGTACAGGACCAGGTAATATAAA---TCGGAA----TCATATTGTGGAA-AAAA-AAT-G-TTTT---GGGGACCAATTTTA--------AAAAACCCTGATATA-GTTGCATTGTTGTAGATAACTTTAAACGTT--TAAAAGTGCAATACCCTTTTCCAAacaatatttcaatttaagtcggaggaaattgaaacaaaatttctaactctaaaaatagatagcacactaatactgcttaatgacctttacctcatcattcggactttttctaagatggaaataaattctacaatatgtagcctatttgatgtatcaaattgaaatcaaaatgaaatgcgactcttttatgtcaataaatgtttcaattcaagcaggaaatctatttcagtctaacctgggcacgtaggccaagttaggaatttaacccgggcatgtaggccaagctaggaataaccttatcagtatattatttcatatgtttgaatagatatcctaatgacagtacaggaccaggtaatataaatcggaatcatattgtggaaaaaaaatgttttggggaccaattttaaaaaaccctgatatagttgcattgttgtagataactttaaacgtttaaaagtgcaatacccttttccaa
gi|10 : ttttcataaaaaaatgttttaaatgttcaacaaatgaaatttattcatcaaagacagtatatcaggaaaaattgcttaattgtctaaaaattcgttttaaaattcgataaaaaaggatctcatttgcatgaagatgtaaaaacaatatttcaatttaagtcggaggaaattgaaacaaaatttctaactctaaaaatagatagcacactaatactgcttaatgacctttacctcatcattcggactttttctaagatggaaataaattctacaatatgtagcctatttgatgtAAATGGA--GTAT-----ATCA---------GGGAAAAACGCT----ATAAATGTCTAT--AAAATGTCTAAAGAAATAAAATTATT-TTTAAAAA--TG-AC-ATAAAGCATCCAATTATGATTAA----TAAATTAA-A--TTGTAATTGTTTGGTATGTCG----CC----AAACATGACAAACTTGATATATTTGAATT---GT---A--A----ACTTG------AA---------ACGA------AATCCTCATTCT-AAAGAT---AGACAG--T-----ACTTA-AATACTGATTGAA-
gi|11 : TAGCCTGGTTAAATAGGTATCCTTACGGCAATATGTGGCCAGTGAGTATATAATATAGGCATAATCGATAAATTTG-A-AAAC-A-T-G-TTTT---GG---TCAATATCAAAGTTTTGAAAAATCCCGATA-T-ACTTC--------------CTTT----------GAAG-T-CA-------TTTTCAACACTgacattcacatcatcat
gi|12 : agtttagacTAAAGAGA--GTAT-----ATCA---------ATAAAAA---C---------ATGTCT-T--AAAA-----------ATTAAATTATT-TTTGAAAT--GG-AT-AAAAAACAT---ATCATC-TTCA----TAAAGT-------CCGAAAGGTTTGGAATGTTGA-AACCATTAAAA--TGACAAAATCA--ATATTTAAATTAGAGTG----------------------------------GT------AATCCAGATTCT-AAAAAgagtatcaaaaatttatataagatttccagctttattg
gi|13 : ACTCAACTTTTTTGAT--------TGGA-----------TATAAAATATATTGCACTTT----TGA-TAAGGAAACTTATTTTAA---TCTAAa
gi|15 : GATATATTTG-A-AAAA-GAA-A-TT------------AACTTAAATTTTTTGAAAAATCCTGATATATATTCC--------------CTTTA
gi|16 : AAA-AAT-A-C--T---GG---TCAATCTTAAAATTTTGAAAAATCCTGATA-
gi|2 : gtTTAAAGGGA--GTAT-----ATCA---------GACAAAAACGCTC----TAACTGTCT-TTAAAAAT----------ATATATTTTTT-TT-AAAAT--GG-TT-AAAATACATCTCATTATCATTGA----TAAATAAA-A--TCCGAATGACTTAGTATGTAAA-ATCCACCAAAATGTGACAACATTG--ATATTTAAATTGGAGTGGTA--A----TCTTG------AA---------ACGA------AATCCACATTCT-AAAAAT---AGACAT--A-----ACTTA-AAAACt
gi|2 : -ATAACTAATCAAAATTGAAATCAAAA-TGAAATCACGTGACTCATTTAAT--------ACGT-----------CACAAAATATGTTGCAA-TT----TAA-GCAGGGAATCAATTTTAG---TTTTACCTAGGCGCGTAGCCCAA--TTAGGAA-ATCCCTTTTCAATACATTATTTTGGCATTTTTAAATATATGTTCTTTTGGCAATAACGCGTAAGTGAGTATA------AG-------TGGTTTATTGG-G-AAGG-AA--A-TGCTCAAAG---CCAATTTTAAAAGTTTTAAAAATCCTGATA-A-ATTGG--------------CTTTtacaagacggcatcattattcttactctttctaagattaactagtgtttactagttgtaaacttgtataactaatcaaaattgaaatcaaaatgaaatcacgtgactcatttaatacgtcacaaaatatgttgcaatttaagcagggaatcaattttagttttacctaggcgcgtagcccaattaggaaatcccttttcaatacattattttggcatttttaaatatatgttcttttggcaataacgcgtaagtgagtataagtggtttattgggaaggaaatgctcaaagccaattttaaaagttttaaaaatcctgataaattggcttt
gi|3 : ttaaagggagtatatcagacaaaaacgctctaactgtctttaaaaatatatattttttttaaaatggttaaaatacatctcattatcattgataaataaaatccgaatgacttagtatgtaaaatccaccaaaatgtgacaacattgatatttaaattggagtggtaatcttgaaacgaaatccacattctaaaaatagacataacttaaaaactacaagacggcatcattattcttactctttctaagattaactagtgtttactagttgtaaacttgtTTTAAGGGA--TCAT-----ATCA---------GGGAAAAACGCTT---ATGAATGTCT-C--AAAAT----------ATGAAATTATT-AT-AAAGA--AG-AT-AAATAGCATCTCATTATCATTAA----TAAGATAA-A--TCCAAATGGTTTGATATGTCAA-ATTCACCAAAACATGACATAATCG--ATATTTGAATTGGAGTGCAA--A----ACTCG------AA---------ACGA------AGTCCCCATTCT-AAAAAT---AGACAT--C-----ACATA-ATTACGGATCATA-TTGAAATCAAAA-TGTAATGGCGTGACTCATTTGAT--------ACTT-----------CACAAAATATGTTGCAATTT----TAA-GCGGGAAATCTATTTTAG---TCTAACCTAGGCGCGTAACTCAA-GTTAGGAA-ATCCTTGTTCAATCTAATATTTTGGCATGTTTAAATAGATATCCGTTAGGCAATGCAGGGTCAGTGAGTATATA---TAGGGA----CGATATATTGG-ATAAAA-AAT-A-TGTT---AG---CCAATTTCAATTTTTTGAAAAATCCTGATA-A-ATTCC--------------CTTTAA----C--TGAA-ATGCAAT---CTTTTTCAATATT
gi|4 : TTAAAGGAA--AAAT-----ATCA---------TGAAAA-----TTGCAATAAATGTCT-T--AAAAA----------GTAAAATTAGTATT-AAAAT--TG-AT-AAAAAGCATCCCATTATCATAAA----T-AGATAAGA--CCCGAATGGTTTGGTTTATTAA-GTCCACC-AAACGTGACAGAAACG--ATGTTTCAGTCGGAGTG--ATGA----AATTGACTCTAAG---------ATGA------AA--CAAATTTTCCAACAT---AAA-----A-----ACCTGTATAACGGATTTAA-TTAAAATCAAAA-TAAAATCCCGTGACAAATTTAAT--------ACGT-----------CACAAAAAAT-TTGCCATTT----TAA-GCGGGAAATACATTCTAG---TCTTACTTCGGTGCGTAGCCCGA-GTTTGGAA-A--CCTTTTTAACATATTAGTTTGGCATGTT-------------------------GGGGTCAATGAGTTTAT-----------------TATATAGG----AAA-AATGA-TTTT---GG---TCAATTTTAAAATTTTGAAAAACCCTGATA-T-ATTTC--------------CCTtttaacaacttccgaaatatgttttcatagtttgtatt
gi|5 : TTAAAGAGA--GTAT-----ATCACTAGAATCAGGAAAAAATGCT----ATAATCACCT-T--AAAAT----------ATAA--TTATT-TT-GAAAA--TGGAT-AAAAAGCACCTTATTTTCATTAA----TAAA-TAA-AATTGCAAATGGTTTGGTATGTCAA-ATAAACCAAAATGTGA-AAAATCG--ATATATAAACTAGAGTA--G--ACAGCACTTA------AATACTGCTTGATGACCTTCAAATCACCACACA-AACAATTTTAACTAT--GTGTAAACCTGTATAACAGATTATA-T--AAATAAAAAACGAAATCACGTGATTCATTTTAT--------ACGT-----------AACAAAGTATACTGCAATCT----TAA-GCAGGAAATCTATTTAAG---TCTATCCTTGGCGCATAGCACAATTTTAGGAA-ATCCCGTTACAATATATTATTTCGGAATGTTTTAATAGATATCCATTTGGCAATATGGGGTC
gi|6 : ta-ATGACGGATACAA-CTGAAATCAAAA-TGAAATAACGTGACTCATTTAAT--------ACGT-----------CACAAATTATGTTGCCATTA----TAAAGCAAGAAATCTATTTTAG---TCTAATCTAGGAGCGTAGCCCAA-ATAAGGAA-AGCCCTTTTAAATATATTATTTTTGCATGTT
gi|6 : taaacaatttttactacgtttaaacatgtGTAATACGGGGTCAGTGAGTATATA---ATGCCA----TGGTATATTGG-A-AAAA-AAT-A-TTTA---AG---TCA--------ATTTTGAAAAATCCTGATA-T-ATTTTA-------------TTTTAG----TCATAAAGATGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgtaatacggggtcagtgagtatataatgccatggtatattggaaaaaaatatttaagtcaattttgaaaaatcctgatatattttattttagtcataaagatgttactgagggtgtaagtgatgcagattttattttgtctgtacattaa
gi|7 : taaacaatttttactacgtttaaacatgtatgacggatacaactgaaatcaaaatgaaataacgtgactcatttaatacgtcacaaattatgttgccattataaagcaagaaatctattttagtctaatctaggagcgtagcccaaataaggaaagcccttttaaatatattatttttgcatgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncATCAAAA-CAATTTCACGTGA----TTTAAT--------ACGT-----------CACCAAATAATTGGCACTTT----TAA-GAGGGGAATCTTCTTTAA---TATGACCTAGGCGCGTAGCCAAA-GTTAGGAA-ACTCCTTTTAAATATATTG-TTTGGTTTGTTTAAATAGATATACATTTGACAATACGGAGTCAGTGAGTATATA---TAGCCA----TAATATTTTGA-A-AAAATGAT---TTTT---GT---TTTATTATAAAA-TTTGAAAAATCCTGATC-A-ATTTC--------------CTTTAA----ttactgagggtgtaagtgatgcagattttattttgtctgtacattaa
gi|8 : atgaactctaactattacgaaaccatttaactacctataaacctatatagctaattaaaatttct-ATAACGGATCAAA-TT------------GAAATCACGCAACTCATTTTAT--------AAGT-----------CACAAAATGTGTTGCACTTT----TAA-ACGGGAAATCTATTTTAA---TCTAACCCTGA-ATGTAGCTCAA-GTTAGGAA-ATCCCTATTCAATATATTATTTTGGCATGTTTAAATAGATATTCATTTTGTAATTCAGGGTCAGTGAGTATATA---TGGACA----TGATATATTAG-A-AAAA-TAT-GTTTTT---AG---CAAATTTTAAAAGATTGAACAATTCTGATA-A-AATCC--------------CTTAAA----atatgacaagaaatgttatattaatatgattatatgtaatccggacagttaccgttattttgtggatattt
gi|9 : AAAGGGAATGTATCATCTATCA---------AGATAAAACGCTT---TTAA-TGTCT-T--AA-----------------------------AAAA-----AT-AAA-----T----TTAT--TTA-----TAAAATGG-G--TAAAAACATTACAATATATCACTATCTAGCAAAACGTGGCAAACTCG--ATATTTAAAATGTAGTATCC--A----ACTTG------AA---------ATGA------AAACCCAATTCT-AAAAAT---AAAAATAGC-----ACTTA-AATACatat
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): ACATTTTATAAGCGATAAATCTGGACGATATGTCACGGGTACTCCATTTTTTTGAAAATAGTT
Unaligned ( gi|17 ): ATTTTTATCATGAACATGAAATATCACATAAAAAA
Alignments
lowQualScore : 11111 222222222 22222 2222222222222 111 1 1111 555555555555555555555555555555555 111111 111 22222222222 1 11111111 22222222222 1111111111111111 111 33333333333333 2222222 11 222
lowQualScore : 66 22222 000000000 33 99999 6 8888 9999999999999 33 5 5 5 000 0 5 0 0 0 0 0000 0 5 8888 22 0 555 1 1 77 1 555555555555555555555555555555555 0 666666 1 11 5 888 000 55555555555 4 2 0 8 4 88 2 0 2 1 66666666 11111111111 3 0 9999 4 777 1 1 66 5 0 0 2 0 7777777777777777 4 555 4 999 888888888 33 222 2 00000000000000 2222222 33 333
lowQualScore : .. ..... ......... .. ..... . .... ............. .. . . . ... . . . . . . .... . . .... .. . ... . . .. . ................................. . ...... . .. . ... ... ........... . . . . . .. . . . . ........ ........... . . .... . ... . . .. . . . . . ................ . ... . ... ......... .. ... . .............. ....... .. ...
lowQualScore : 99 55555 000000000 66 44444 6 0000 5555555555555 66 0 0 0 000 0 0 2 8 1 2 6666 1 5 0000 44 7 999 4 7 99 7 777777777777777777777777777777777 4 444444 7 77 0 888 000 77777777777 5 6 1 9 5 11 5 7 0 0 11111111 11111111111 7 7 4444 4 888 0 4 44 2 1 2 8 5 2222222222222222 4 333 0 999 777777777 22 111 7 66666666666666 7777777 55 333
consensus : TTAAAGGGA--GTAT-----ATCA---------GGAAAAAACGCTT---ATAAATGTCT-T--AAAAT----------A-TAAAATTATT-T-T-AAAA-NNG-AT-AAAAAGCATCTCATTATCATTAA----TAAAATAA-A--TCCGAATGGTTTGGTATGTCGAATCCACCAAAACGTGACAAAATCG--ATATTTAAATTGGAGTG--A--A----ACTTG------AA---------ACGA------AATCCNCATTCT-AAAA---AT---AGACAT--N-----ACTTG-ATAACGGATCAAA-TTGAAATCAAAA-CGAAATCACGCGACTCATTTNAT--------ACGT-----------CACAAAATATGTTGCAATTT----TAA-GCGGGAAATCTATTTTAG---TCTAACCTNGGCGCGTAGCCCAA-GTTAGGAAATCCCTTTTCAATATATTATTTTGGCATGTTTAAATAGATATCCNTTTGGCAATACGGGGTCAGTGAGTATATA---TAGGCAT----GATATATT-GG-A-AAAA-AAT-G-TTT-TGG---CCAATTTTAAAATTTTGAAAAATCCTGATA-A-ATTCC--------------CTTTAA----T--TGAAGATGCAAT---CTTTTTCAACACT
Reference ( family-1473 ) : TTAAAGGGA--GTAT-----ATCA---------GGAAAAAACGCTT---ATAAATGTCT-T--AAAAT----------A-TAAAATTATT-T-T-AAAA-ANG-AT-AAAAAGCATCTCATTATCATTAA----TAAAATAA-A--TCCGAATGGTTTGGTATGTCGAATCCACCAAAACGTGACAAAATCG--ATATTTAAATTGGAGTG--A--A----ACTTG------AA---------ACGA------AATCCNCATTCT-AAAA---AT---AGACAT--N-----ACTTA-ATAACGGATCAAA-TTGAAATCAAAA-CGAAATCACGCGACTCATTTNAT--------ACGT-----------CACAAAATATGTTGCAATTT----TAA-GCGGGAAATCTATTTTAG---TCTAACCTNGGCGCGTAGCCCAA-GTTAGGAAATCCCTTTTCAATATATTATTTTGGCATGTTTAAATAGATATCCNTTTGGCAATACGGGGTCAGTGAGTATATA---TAGGCAT----GATATATT-GG-A-AAAA-AAT-A-TTT-TGG---CCAATTTTAAAATTTTGAAAAATCCTGATA-A-ATTCC--------------CTTTAA----T--TGAAGATGCAAT---CTTTTTCAACACT
gi|1 : TCAAAGACA--GTAT-----ATCA---------GGAAAAATTGCT-----TAATTGTCT-A--AAAAT-----------------TCGTT-T-T-AAAATTCG-ATAAAAAAGGATCTCATTTGCATGAAGATGTAAAA
gi|1 : ttttcataaaaaaatgttttaaatgttcaacaaatgaaatttattcaATTCT-ACAATATGT---AGCC----T-----ATTTG-AT---GTATCAAA-TTGAAATCAAAA-TGAAAT---GCGACTC-TTTTATGTCAATAAATGTTTCAATTCAAGCAGGAAATCTATTTCAGTCTAACCTGG-GCACGTAGGCCAAGTTAGGAATTTAACCCGGGCATGTAGGCCAA-GCTAGGAATAACCTTATCAGTATATTATTTCA-TATGTTTGAATAGATATCCTAATGACAGTACAGGACCAGGTAATATAAA---TCGGAAT----CATATTGT-GGAA-AAAA-AAT-G-TTT-TGGGGACCAATTTTA--------AAAAACCCTGATATA-GTTGCATTGTTGTAGATAACTTTAAACGTT--TAAAAGTGCAATACCCTTTTCCAAacaatatttcaatttaagtcggaggaaattgaaacaaaatttctaactctaaaaatagatagcacactaatactgcttaatgacctttacctcatcattcggactttttctaagatggaaataaattctacaatatgtagcctatttgatgtatcaaattgaaatcaaaatgaaatgcgactcttttatgtcaataaatgtttcaattcaagcaggaaatctatttcagtctaacctgggcacgtaggccaagttaggaatttaacccgggcatgtaggccaagctaggaataaccttatcagtatattatttcatatgtttgaatagatatcctaatgacagtacaggaccaggtaatataaatcggaatcatattgtggaaaaaaaatgttttggggaccaattttaaaaaaccctgatatagttgcattgttgtagataactttaaacgtttaaaagtgcaatacccttttccaa
gi|10 : ttttcataaaaaaatgttttaaatgttcaacaaatgaaatttattcatcaaagacagtatatcaggaaaaattgcttaattgtctaaaaattcgttttaaaattcgataaaaaaggatctcatttgcatgaagatgtaaaaacaatatttcaatttaagtcggaggaaattgaaacaaaatttctaactctaaaaatagatagcacactaatactgcttaatgacctttacctcatcattcggactttttctaagatggaaataaAAATGGA--GTAT-----ATCA---------GGGAAAAACGCT----ATAAATGTCTAT--AAAATGTCTAAAGAAA-TAAAATTATT-T-TTAAAA-ATG-AC-ATAAAGCATCCAATTATGATTAA----TAAATTAA-A--TTGTAATTGTTTGGTATGTCG---CC----AAACATGACAAACTTGATATATTTGAATT---GT---A--A----ACTTG------AA---------ACGA------AATCCTCATTCT-AAAG---AT---AGACAG--T-----ACTTA-AATACTGATTGAA-
gi|11 : TAGCCTGGTTAAATAGGTATCCTTACGGCAATATGTGGCCAGTGAGTATATAATATAGGCATAATCGATAAATT-TG-A-AAAC-A-T-G-TTT-TGG---TCAATATCAAAGTTTTGAAAAATCCCGATA-T-ACTTC--------------CT--------T--TGAAG------T---CATTTTCAACACTgacattcacatcatcat
gi|12 : agtttagacTAAAGAGA--GTAT-----ATCA---------ATAAAAA---C---------ATGTCT-T--AAAA-----------A-TTAAATTATT-T-T-TGAA-ATGGAT-AAAAAACAT---ATCATC-TTCA----TAAAGT-------CCGAAAGGTTTGGAATGTTGAAACCATTAAAA--TGACAAAATCA--ATATTTAAATTAGAGTG----------------------------------GT------AATCCAGATTCT-AAAA---Agagtatcaaaaatttatataagatttccagctttattg
gi|13 : ACTCAACTTTTTTGAT--------TGGA-----------TATAAAATATATTGCACTTT----TGA-TAAGGAAACTTATTTTAA---TCTAAa
gi|15 : ----GATATATT-TG-A-AAAA-GAA-A-TT----------AACTTAAATTTTTTGAAAAATCCTGATATATATTCC--------------CTTTA
gi|16 : AAA-AAT-A-CT---GG---TCAATCTTAAAATTTTGAAAAATCCTGATA-
gi|2 : gtTTAAAGGGA--GTAT-----ATCA---------GACAAAAACGCTC----TAACTGTCT-TTAAAAAT----------A-TATATTTTTT-T-T-AAAA-TGG-TT-AAAATACATCTCATTATCATTGA----TAAATAAA-A--TCCGAATGACTTAGTATGTAAAATCCACCAAAATGTGACAACATTG--ATATTTAAATTGGAGTGGTA--A----TCTTG------AA---------ACGA------AATCCACATTCT-AAAA---AT---AGACAT--A-----ACTTA-AAAACt
gi|2 : -----ACTTGTATAACTAATCAAAATTGAAATCAAAA-TGAAATCACGTGACTCATTTAAT--------ACGT-----------CACAAAATATGTTGCAA-TT----TAA-GCAGGGAATCAATTTTAG---TTTTACCTAGGCGCGTAGCCCAA--TTAGGAAATCCCTTTTCAATACATTATTTTGGCATTTTTAAATATATGTTCTTTTGGCAATAACGCGTAAGTGAGTATA------AG---T----GGTTTATTGGG-A-AGGA-AAT-G-CTCAAAG---CCAATTTTAAAAGTTTTAAAAATCCTGATA-A-ATTGG--------------CTTTtacaagacggcatcattattcttactctttctaagattaactagtgtttactagttgtaaacttgtataactaatcaaaattgaaatcaaaatgaaatcacgtgactcatttaatacgtcacaaaatatgttgcaatttaagcagggaatcaattttagttttacctaggcgcgtagcccaattaggaaatcccttttcaatacattattttggcatttttaaatatatgttcttttggcaataacgcgtaagtgagtataagtggtttattgggaaggaaatgctcaaagccaattttaaaagttttaaaaatcctgataaattggcttt
gi|3 : ttaaagggagtatatcagacaaaaacgctctaactgtctttaaaaatatatattttttttaaaatggttaaaatacatctcattatcattgataaataaaatccgaatgacttagtatgtaaaatccaccaaaatgtgacaacattgatatttaaattggagtggtaatcttgaaacgaaatccacattctaaaaatagacataacttaaaaactacaagacggcatcattattcttactctttctaagattaactagtgtttactagttgtaaTTTAAGGGA--TCAT-----ATCA---------GGGAAAAACGCTT---ATGAATGTCT-C--AAAAT----------A-TGAAATTATT-A-T-AAAG-AAG-AT-AAATAGCATCTCATTATCATTAA----TAAGATAA-A--TCCAAATGGTTTGATATGTCAAATTCACCAAAACATGACATAATCG--ATATTTGAATTGGAGTGCAA--A----ACTCG------AA---------ACGA------AGTCCCCATTCT-AAAA---AT---AGACAT--C-----ACATA-ATTACGGATCATA-TTGAAATCAAAA-TGTAATGGCGTGACTCATTTGAT--------ACTT-----------CACAAAATATGTTGCAATTT----TAA-GCGGGAAATCTATTTTAG---TCTAACCTAGGCGCGTAACTCAA-GTTAGGAAATCCTTGTTCAATCTAATATTTTGGCATGTTTAAATAGATATCCGTTAGGCAATGCAGGGTCAGTGAGTATATA---TAGGGAC----GATATATT-GG-ATAAAA-AAT-A-TGT-TAG---CCAATTTCAATTTTTTGAAAAATCCTGATA-A-ATTCC--------------CTTTAA----C--TGAA-ATGCAAT---CTTTTTCAATATT
gi|4 : TTAAAGGAA--AAAT-----ATCA---------TGAAAA-----TTGCAATAAATGTCT-T--AAAAA----------G-TAAAATTAGTAT-T-AAAA-TTG-AT-AAAAAGCATCCCATTATCATAAA----T-AGATAAGA--CCCGAATGGTTTGGTTTATTAAGTCCACC-AAACGTGACAGAAACG--ATGTTTCAGTCGGAGTG--ATGA----AATTGACTCTAAG---------ATGA------AA--CAAATTTTCCAAC---AT---AAA-----A-----ACCTGTATAACGGATTTAA-TTAAAATCAAAA-TAAAATCCCGTGACAAATTTAAT--------ACGT-----------CACAAAAAAT-TTGCCATTT----TAA-GCGGGAAATACATTCTAG---TCTTACTTCGGTGCGTAGCCCGA-GTTTGGAAA--CCTTTTTAACATATTAGTTTGGCATGTT-------------------------GGGGTCAATGAGTTTAT-----------------TATATA-GG----AAA-AATGA-TTT-TGG---TCAATTTTAAAATTTTGAAAAACCCTGATA-T-ATTTC--------------CCTtttaacaacttccgaaatatgttttcatagtttgtatt
gi|5 : TTAAAGAGA--GTAT-----ATCACTAGAATCAGGAAAAAATGCT----ATAATCACCT-T--AAAAT----------A-TAA--TTATT-T-T-GAAA-ATGGAT-AAAAAGCACCTTATTTTCATTAA----TAAA-TAA-AATTGCAAATGGTTTGGTATGTCAAATAAACCAAAATGTGA-AAAATCG--ATATATAAACTAGAGTA--G--ACAGCACTTA------AATACTGCTTGATGACCTTCAAATCACCACACA-AACA---ATTTTAACTAT--GTGTAAACCTGTATAACAGATTATA-T--AAATAAAAAACGAAATCACGTGATTCATTTTAT--------ACGT-----------AACAAAGTATACTGCAATCT----TAA-GCAGGAAATCTATTTAAG---TCTATCCTTGGCGCATAGCACAATTTTAGGAAATCCCGTTACAATATATTATTTCGGAATGTTTTAATAGATATCCATTTGGCAATATGGGGTC
gi|6 : ta-ATGACGGATACAA-CTGAAATCAAAA-TGAAATAACGTGACTCATTTAAT--------ACGT-----------CACAAATTATGTTGCCATTA----TAAAGCAAGAAATCTATTTTAG---TCTAATCTAGGAGCGTAGCCCAA-ATAAGGAAAGCCCTTTTAAATATATTATTTTTGCATGTT
gi|6 : taaacaatttttactacgtttaaacatgtGTAATACGGGGTCAGTGAGTATATA---ATGCCAT----GGTATATT-GG-A-AAAA-AAT-A-TTT-AAG---TC--------AATTTTGAAAAATCCTGATA-T-ATTTTA-------------TTTTAG----TCATAAAGATGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgtaatacggggtcagtgagtatataatgccatggtatattggaaaaaaatatttaagtcaattttgaaaaatcctgatatattttattttagtcataaagatgttactgagggtgtaagtgatgcagattttattttgtctgtacattaa
gi|7 : taaacaatttttactacgtttaaacatgtatgacggatacaactgaaatcaaaatgaaataacgtgactcatttaatacgtcacaaattatgttgccattataaagcaagaaatctattttagtctaatctaggagcgtagcccaaataaggaaagcccttttaaatatattatttttgcatgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnc-----ACCTATATAGCTAATTAAAATTTCTATCAAAA-CAATTTCACGTGA----TTTAAT--------ACGT-----------CACCAAATAATTGGCACTTT----TAA-GAGGGGAATCTTCTTTAA---TATGACCTAGGCGCGTAGCCAAA-GTTAGGAAACTCCTTTTAAATATATTG-TTTGGTTTGTTTAAATAGATATACATTTGACAATACGGAGTCAGTGAGTATATA---TAGCCAT----AATATTTT-GA-A-AAAATGAT---TTT-TGT---TTTATTATAAAA-TTTGAAAAATCCTGATC-A-ATTTC--------------CTTTAA----ttactgagggtgtaagtgatgcagattttattttgtctgtacattaa
gi|8 : atgaactctaactattacgaaaccatttaactacctataa-ATAACGGATCAAA-TT------------GAAATCACGCAACTCATTTTAT--------AAGT-----------CACAAAATGTGTTGCACTTT----TAA-ACGGGAAATCTATTTTAA---TCTAACCCTGA-ATGTAGCTCAA-GTTAGGAAATCCCTATTCAATATATTATTTTGGCATGTTTAAATAGATATTCATTTTGTAATTCAGGGTCAGTGAGTATATA---TGGACAT----GATATATT-AG-A-AAAA-TAT-GTTTT-TAG---CAAATTTTAAAAGATTGAACAATTCTGATA-A-AATCC--------------CTTAAA----atatgacaagaaatgttatattaatatgattatatgtaatccggacagttaccgttattttgtggatattt
gi|9 : AAAGGGAATGTATCATCTATCA---------AGATAAAACGCTT---TTAA-TGTCT-T--AAAAA----------AATAAATTTATT-TAT-AAAA-TGG-GT-AAAAA------CATTAC-------------AATAT-A--TC--ACT---------------ATCTAGCAAAACGTGGCAAACTCG--ATATTTAAAATGTAGTATCC--A----ACTTG------AA---------ATGA------AAACCCAATTCT-AAAA---AT---AAAAATAGC-----ACTTA-Aatat
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): ACATTTTATAAGCGATAAATCTGGACGATATGTCACGGGTACTCCATTTTTTTGAAAATAGTT
Unaligned ( gi|17 ): ATTTTTATCATGAACATGAAATATCACATAAAAAA
Alignments
lowQualScore : 11111 222222222 22222 2222222222222 1 1111 1 555555555555555555555555555555555 111111 111 111 22222222222 1 11111111 22222222222 1111111111111111 11 111 33333333333333 2222222 11 222
lowQualScore : 66 22222 000000000 33 99999 6 8888 9999999999999 33 5 5 5 0 777 5 0 0 0 0 0000 2 2 5 77 22 0 555 1 77 1 555555555555555555555555555555555 0 666666 1 11 333 000 77777777777 2 3 5 3 88 2 0 2 1 66666666 11111111111 3 0 9999 4 777 1 1 66 5 0 0 2 0 7777777777777777 4 888 33 888888888 33 222 2 00000000000000 2222222 33 333
lowQualScore : .. ..... ......... .. ..... . .... ............. .. . . . . ... . . . . . .... . . . .. .. . ... . .. . ................................. . ...... . .. ... ... ........... . . . . .. . . . . ........ ........... . . .... . ... . . .. . . . . . ................ . ... .. ......... .. ... . .............. ....... .. ...
lowQualScore : 99 55555 000000000 66 44444 6 0000 5555555555555 66 0 0 0 0 000 0 2 8 1 2 6666 0 8 7 99 44 7 999 7 99 7 777777777777777777777777777777777 4 444444 7 77 888 000 11111111111 0 9 0 0 11 5 7 0 0 11111111 11111111111 7 7 4444 4 888 0 4 44 2 1 2 8 5 2222222222222222 4 000 55 777777777 22 111 7 66666666666666 7777777 55 333
consensus : TTAAAGGGA--GTAT-----ATCA---------GGAAAAAACGCTT---ATAAATGTCT-T--AAAAT----------A-TAAAATTA-TT-T-T-AAAA-TGGAT-AAAAAGCATCTCATTATCATTAA----TAAA-TAA-A--TCCGAATGGTTTGGTATGTCGAATCCACCAAAACGTGACAAAATCG--ATATTTAAATTGGAGTG--A--A----ACTTGA------A---------ACGA------AATCCNCATTCTAAAA---AT---AGACAT--N-----ACTTG-ATAACGGATCAAA-TTGAAATCAAAA-CGAAATCACGCGACTCATTTNAT--------ACGT-----------CACAAAATATGTTGCAATTT----TAA-GCGGGAAATCTATTTTAG---TCTAACCTNGGCGCGTAGCCCAA-GTTAGGAAATCCCTTTTCAATATATTATTTTGGCATGTTTAAATAGATATCCNTTTGGCAATACGGGGTCAGTGAGTATATA---TAGGCAT----GATATATT-GG-A-AAAAAATG--TTT-TGG---CCAATTTTAAAATTTTGAAAAATCCTGATA-A-ATTCC--------------CTTTAA----T--TGAAGATGCAAT---CTTTTTCAACACT
Reference ( family-1473 ) : TTAAAGGGA--GTAT-----ATCA---------GGAAAAAACGCTT---ATAAATGTCT-T--AAAAT----------A-TAAAATTA-TT-T-T-AAAA-NNGAT-AAAAAGCATCTCATTATCATTAA----TAAAATAA-A--TCCGAATGGTTTGGTATGTCGAATCCACCAAAACGTGACAAAATCG--ATATTTAAATTGGAGTG--A--A----ACTTGA------A---------ACGA------AATCCNCATTCTAAAA---AT---AGACAT--N-----ACTTG-ATAACGGATCAAA-TTGAAATCAAAA-CGAAATCACGCGACTCATTTNAT--------ACGT-----------CACAAAATATGTTGCAATTT----TAA-GCGGGAAATCTATTTTAG---TCTAACCTNGGCGCGTAGCCCAA-GTTAGGAAATCCCTTTTCAATATATTATTTTGGCATGTTTAAATAGATATCCNTTTGGCAATACGGGGTCAGTGAGTATATA---TAGGCAT----GATATATT-GG-A-AAAAAATG--TTT-TGG---CCAATTTTAAAATTTTGAAAAATCCTGATA-A-ATTCC--------------CTTTAA----T--TGAAGATGCAAT---CTTTTTCAACACT
gi|1 : TCAAAGACA--GTAT-----ATCA---------GGAAAAATTGCT-----TAATTGTCT-A--AAAAT-----------------TCG-TT-T-T-AAAATTCGATAAAAAAGGATCTCATTTGCATGAAGATGTAAAA
gi|1 : ttttcataaaaaaatgttttaaatgttcaacaaatgaaatttattcaATTCTACAATATGT---AGCC----T-----ATTTG-AT---GTATCAAA-TTGAAATCAAAA-TGAAAT---GCGACTC-TTTTATGTCAATAAATGTTTCAATTCAAGCAGGAAATCTATTTCAGTCTAACCTGG-GCACGTAGGCCAAGTTAGGAATTTAACCCGGGCATGTAGGCCAA-GCTAGGAATAACCTTATCAGTATATTATTTCA-TATGTTTGAATAGATATCCTAATGACAGTACAGGACCAGGTAATATAAA---TCGGAAT----CATATTGT-GGAA-AAAAAATG--TTT-TGGGGACCAATTTTA--------AAAAACCCTGATATA-GTTGCATTGTTGTAGATAACTTTAAACGTT--TAAAAGTGCAATACCCTTTTCCAAacaatatttcaatttaagtcggaggaaattgaaacaaaatttctaactctaaaaatagatagcacactaatactgcttaatgacctttacctcatcattcggactttttctaagatggaaataaattctacaatatgtagcctatttgatgtatcaaattgaaatcaaaatgaaatgcgactcttttatgtcaataaatgtttcaattcaagcaggaaatctatttcagtctaacctgggcacgtaggccaagttaggaatttaacccgggcatgtaggccaagctaggaataaccttatcagtatattatttcatatgtttgaatagatatcctaatgacagtacaggaccaggtaatataaatcggaatcatattgtggaaaaaaaatgttttggggaccaattttaaaaaaccctgatatagttgcattgttgtagataactttaaacgtttaaaagtgcaatacccttttccaa
gi|10 : ttttcataaaaaaatgttttaaatgttcaacaaatgaaatttattcatcaaagacagtatatcaggaaaaattgcttaattgtctaaaaattcgttttaaaattcgataaaaaaggatctcatttgcatgaagatgtaaaaacaatatttcaatttaagtcggaggaaattgaaacaaaatttctaactctaaaaatagatagcacactaatactgcttaatgacctttacctcatcattcggactttttctaagatggaaataaAAATGGA--GTAT-----ATCA---------GGGAAAAACGCT----ATAAATGTCTAT--AAAATGTCTAAAGAAA-TAAAATTA-TT-T-TTAAAA-ATGAC-ATAAAGCATCCAATTATGATTAA----TAAATTAA-A--TTGTAATTGTTTGGTATGTCG---CC----AAACATGACAAACTTGATATATTTGAATT---GT---A--A----ACTTGA------A---------ACGA------AATCCTCATTCTAAAG---AT---AGACAG--T-----ACTTA-AATACTGATTGAA-
gi|11 : TAGCCTGGTTAAATAGGTATCCTTACGGCAATATGTGGCCAGTGAGTATATAATATAGGCATAATCGATAAATT-TG-A-AAACA-TG--TTT-TGG---TCAATATCAAAGTTTTGAAAAATCCCGATA-T-ACTTC--------------CT--------T--TGAAG------T---CATTTTCAACACTgacattcacatcatcat
gi|12 : agtttagacTAAAGAGA--GTAT-----ATCA---------ATAAAAA---C---------ATGTCT-T--AAAA-----------A-TTAAATTATTT-T-T-GAAA-TGGAT-AAAAAACAT---ATCATC-TTCA----TA----AA-G--TCCGAAAGGTTTGGAATGTTGAAACCATTAAAA--TGACAAAATCA--ATATTTAAATTAGAGTG----------------------------------GT------AATCCAGATTCTAAAA---Agagtatcaaaaatttatataagatttccagctttattg
gi|13 : ACTCAACTTTTTTGAT--------TGGA-----------TATAAAATATATTGCACTTT----TGA-TAAGGAAACTTATTTTAA---TCTAAa
gi|15 : ----GATATATT-TG-A-AAAAGAAA--TT----------AACTTAAATTTTTTGAAAAATCCTGATATATATTCC--------------CTTTA
gi|16 : AAAAATA--CT---GG---TCAATCTTAAAATTTTGAAAAATCCTGATA-
gi|2 : gtTTAAAGGGA--GTAT-----ATCA---------GACAAAAACGCTC----TAACTGTCT-TTAAAAAT----------A-TATATTTT-TT-T-T-AAAA-TGGTT-AAAATACATCTCATTATCATTGA----TAAATAAA-A--TCCGAATGACTTAGTATGTAAAATCCACCAAAATGTGACAACATTG--ATATTTAAATTGGAGTGGTA--A----TCTTGA------A---------ACGA------AATCCACATTCTAAAA---AT---AGACAT--A-----ACTTA-AAAACt
gi|2 : -----ACTTGTATAACTAATCAAAATTGAAATCAAAA-TGAAATCACGTGACTCATTTAAT--------ACGT-----------CACAAAATATGTTGCAA-TT----TAA-GCAGGGAATCAATTTTAG---TTTTACCTAGGCGCGTAGCCCAA--TTAGGAAATCCCTTTTCAATACATTATTTTGGCATTTTTAAATATATGTTCTTTTGGCAATAACGCGTAAGTGAGTATA------AG---T----GGTTTATTGGG-A-AGGAAATG--CTCAAAG---CCAATTTTAAAAGTTTTAAAAATCCTGATA-A-ATTGG--------------CTTTtacaagacggcatcattattcttactctttctaagattaactagtgtttactagttgtaaacttgtataactaatcaaaattgaaatcaaaatgaaatcacgtgactcatttaatacgtcacaaaatatgttgcaatttaagcagggaatcaattttagttttacctaggcgcgtagcccaattaggaaatcccttttcaatacattattttggcatttttaaatatatgttcttttggcaataacgcgtaagtgagtataagtggtttattgggaaggaaatgctcaaagccaattttaaaagttttaaaaatcctgataaattggcttt
gi|3 : ttaaagggagtatatcagacaaaaacgctctaactgtctttaaaaatatatattttttttaaaatggttaaaatacatctcattatcattgataaataaaatccgaatgacttagtatgtaaaatccaccaaaatgtgacaacattgatatttaaattggagtggtaatcttgaaacgaaatccacattctaaaaatagacataacttaaaaactacaagacggcatcattattcttactctttctaagattaactagtgtttactagttgtaaTTTAAGGGA--TCAT-----ATCA---------GGGAAAAACGCTT---ATGAATGTCT-C--AAAAT----------A-TGAAATTA-TT-A-T-AAAG-AAGAT-AAATAGCATCTCATTATCATTAA----TAAGATAA-A--TCCAAATGGTTTGATATGTCAAATTCACCAAAACATGACATAATCG--ATATTTGAATTGGAGTGCAA--A----ACTCGA------A---------ACGA------AGTCCCCATTCTAAAA---AT---AGACAT--C-----ACATA-ATTACGGATCATA-TTGAAATCAAAA-TGTAATGGCGTGACTCATTTGAT--------ACTT-----------CACAAAATATGTTGCAATTT----TAA-GCGGGAAATCTATTTTAG---TCTAACCTAGGCGCGTAACTCAA-GTTAGGAAATCCTTGTTCAATCTAATATTTTGGCATGTTTAAATAGATATCCGTTAGGCAATGCAGGGTCAGTGAGTATATA---TAGGGAC----GATATATT-GG-ATAAAAAATA--TGT-TAG---CCAATTTCAATTTTTTGAAAAATCCTGATA-A-ATTCC--------------CTTTAA----C--TGAA-ATGCAAT---CTTTTTCAATATT
gi|4 : TTAAAGGAA--AAAT-----ATCA---------TGAAAA-----TTGCAATAAATGTCT-T--AAAAA----------G-TAAAATTA-GTAT-T-AAAA-TTGAT-AAAAAGCATCCCATTATCATAAA----TAGA-TAAGA--CCCGAATGGTTTGGTTTATTAAGTCCACCAAA-CGTGACAGAAACG--ATGTTTCAGTCGGAGTG--ATGA----AATTGACTCTAAG---------ATGA------AA--CAAATTTTCCAAC--AT---AAA-----A-----ACCTGTATAACGGATTTAA-TTAAAATCAAAA-TAAAATCCCGTGACAAATTTAAT--------ACGT-----------CACAAAAAAT-TTGCCATTT----TAA-GCGGGAAATACATTCTAG---TCTTACTTCGGTGCGTAGCCCGA-GTTTGGAAA--CCTTTTTAACATATTAGTTTGGCATGTT-------------------------GGGGTCAATGAGTTTAT-----------------TATATA-GG----AAAAATGA-TTT-TGG---TCAATTTTAAAATTTTGAAAAACCCTGATA-T-ATTTC--------------CCTtttaacaacttccgaaatatgttttcatagtttgtatt
gi|5 : TTAAAGAGA--GTAT-----ATCACTAGAATCAGGAAAAAATGCT----ATAATCACCT-T--AAAAT----------A-TAA--TTA-TT-T-TGAAAA-TGGAT-AAAAAGCACCTTATTTTCATTAA----TAAA-TAA-AATTGCAAATGGTTTGGTATGTCAAATAAACCAAAATGTGA-AAAATCG--ATATATAAACTAGAGTA--G--ACAGCACTTAA------ATACTGCTTGATGACCTTCAAATCACCACACAAACA---ATTTTAACTAT--GTGTAAACCTGTATAACAGATTATA-T--AAATAAAAAACGAAATCACGTGATTCATTTTAT--------ACGT-----------AACAAAGTATACTGCAATCT----TAA-GCAGGAAATCTATTTAAG---TCTATCCTTGGCGCATAGCACAATTTTAGGAAATCCCGTTACAATATATTATTTCGGAATGTTTTAATAGATATCCATTTGGCAATATGGGGTC
gi|6 : ta-ATGACGGATACAA-CTGAAATCAAAA-TGAAATAACGTGACTCATTTAAT--------ACGT-----------CACAAATTATGTTGCCATTA----TAAAGCAAGAAATCTATTTTAG---TCTAATCTAGGAGCGTAGCCCAA-ATAAGGAAAGCCCTTTTAAATATATTATTTTTGCATGTT
gi|6 : taaacaatttttactacgtttaaacatgtGTAATACGGGGTCAGTGAGTATATA---ATGCCAT----GGTATATT-GG-A-AAAAAATA--TTT-AAG---TC--------AATTTTGAAAAATCCTGATA-T-ATTTTA-------------TTTTAG----TCATAAAGATGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgtaatacggggtcagtgagtatataatgccatggtatattggaaaaaaatatttaagtcaattttgaaaaatcctgatatattttattttagtcataaagatgttactgagggtgtaagtgatgcagattttattttgtctgtacattaa
gi|7 : taaacaatttttactacgtttaaacatgtatgacggatacaactgaaatcaaaatgaaataacgtgactcatttaatacgtcacaaattatgttgccattataaagcaagaaatctattttagtctaatctaggagcgtagcccaaataaggaaagcccttttaaatatattatttttgcatgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncATCAAAA-CAATTTCACGTGA----TTTAAT--------ACGT-----------CACCAAATAATTGGCACTTT----TAA-GAGGGGAATCTTCTTTAA---TATGACCTAGGCGCGTAGCCAAA-GTTAGGAAACTCCTTTTAAATATATTG-TTTGGTTTGTTTAAATAGATATACATTTGACAATACGGAGTCAGTGAGTATATA---TAGCCAT----AATATTTT-G----AAAAAATGATTTT-TGT---TTTATTATAAAA-TTTGAAAAATCCTGATC-A-ATTTC--------------CTTTAA----ttactgagggtgtaagtgatgcagattttattttgtctgtacattaa
gi|8 : atgaactctaactattacgaaaccatttaactacctataaacctatatagctaattaaaatttct-ATAACGGATCAAA-TT------------GAAATCACGCAACTCATTTTAT--------AAGT-----------CACAAAATGTGTTGCACTTT----TAA-ACGGGAAATCTATTTTAA---TCTAACCCTGA-ATGTAGCTCAA-GTTAGGAAATCCCTATTCAATATATTATTTTGGCATGTTTAAATAGATATTCATTTTGTAATTCAGGGTCAGTGAGTATATA---TGGACAT----GATATATT-AG-A-AAAATATGT-TTT-TAG---CAAATTTTAAAAGATTGAACAATTCTGATA-A-AATCC--------------CTTAAA----atatgacaagaaatgttatattaatatgattatatgtaatccggacagttaccgttattttgtggatattt
gi|9 : AAAGGGAATGTATCATCTATCA---------AGATAAAACGCTT---TTAA-TGTCT-T--AAAAA----------AATAAATTTA-TT-TAT-AAAA-TGGGT-AAAAA------CATTAC-------------AATAT-A--TC--ACT---------------ATCTAGCAAAACGTGGCAAACTCG--ATATTTAAAATGTAGTATCC--A----ACTTGA------A---------ATGA------AAACCCAATTCTAAAA---AT---AAAAATAGC-----ACTTA-Aatat
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): ACATTTTATAAGCGATAAATCTGGACGATATGTCACGGGTACTCCATTTTTTTGAAAATAGTT
Unaligned ( gi|17 ): ATTTTTATCATGAACATGAAATATCACATAAAAAA
Alignments
lowQualScore : 11111 222222222 22222 2222222222222 11 11 555555555555555555555555555555555 111111 111 111 22222222222 1 11111111 22222222222 1111111111111111 11 111 33333333333333 2222222 11 222
lowQualScore : 66 22222 000000000 33 99999 6 8888 9999999999999 33 5 5 5 11 5 5 0 0 0 0 77 5 5 11 22 0 555 66 77 0 555555555555555555555555555555555 0 666666 1 11 333 000 77777777777 2 3 5 3 88 2 0 2 1 66666666 11111111111 3 0 9999 4 777 1 1 66 5 0 0 2 0 7777777777777777 4 888 33 888888888 33 222 2 00000000000000 2222222 33 333
lowQualScore : .. ..... ......... .. ..... . .... ............. .. . . . .. . . . . . . .. . . .. .. . ... .. .. . ................................. . ...... . .. ... ... ........... . . . . .. . . . . ........ ........... . . .... . ... . . .. . . . . . ................ . ... .. ......... .. ... . .............. ....... .. ...
lowQualScore : 99 55555 000000000 66 44444 6 0000 5555555555555 66 0 0 0 99 0 0 2 8 1 2 22 0 0 99 44 7 999 77 99 7 777777777777777777777777777777777 4 444444 7 77 888 000 11111111111 0 9 0 0 11 5 7 0 0 11111111 11111111111 7 7 4444 4 888 0 4 44 2 1 2 8 5 2222222222222222 4 000 55 777777777 22 111 7 66666666666666 7777777 55 333
consensus : TTAAAGGGA--GTAT-----ATCA---------GGAAAAAACGCTT---ATAAATGTCT-T--AAAAT----------A-TAAAATTA-TT-T-T--AAAA-TGGAT-AAAAAGCATCTCATTATCATTAATAA-AT-AA-A--TCCGAATGGTTTGGTATGTCGAATCCACCAAAACGTGACAAAATCGATAT--TTAAATTGGAGTG--A--A----ACTTGA------A---------ACGA------AATCCNCATTCTAAAA---AT---AGACAT--N-----ACTTG-ATAACGGATCAAA-TTGAAATCAAAA-CGAAATCACGCGACTCATTTNAT--------ACGT-----------CACAAAATATGTTGCAATTT----TAA-GCGGGAAATCTATTTTAG---TCTAACCTNGGCGCGTAGCCCAA-GTTAGGAAATCCCTTTTCAATATATTATTTTGGCATGTTTAAATAGATATCCNTTTGGCAATACGGGGTCAGTGAGTATATA---TAGGCAT----GATATATT-GG-A-AAAAAATG--TTT-TGG---CCAATTTTAAAATTTTGAAAAATCCTGATA-A-ATTCC--------------CTTTAA----T--TGAAGATGCAAT---CTTTTTCAACACT
Reference ( family-1473 ) : TTAAAGGGA--GTAT-----ATCA---------GGAAAAAACGCTT---ATAAATGTCT-T--AAAAT----------A-TAAAATTA-TT-T-T--AAAA-TGGAT-AAAAAGCATCTCATTATCATTAATAA-AT-AA-A--TCCGAATGGTTTGGTATGTCGAATCCACCAAAACGTGACAAAATCGATAT--TTAAATTGGAGTG--A--A----ACTTGA------A---------ACGA------AATCCNCATTCTAAAA---AT---AGACAT--N-----ACTTG-ATAACGGATCAAA-TTGAAATCAAAA-CGAAATCACGCGACTCATTTNAT--------ACGT-----------CACAAAATATGTTGCAATTT----TAA-GCGGGAAATCTATTTTAG---TCTAACCTNGGCGCGTAGCCCAA-GTTAGGAAATCCCTTTTCAATATATTATTTTGGCATGTTTAAATAGATATCCNTTTGGCAATACGGGGTCAGTGAGTATATA---TAGGCAT----GATATATT-GG-A-AAAAAATG--TTT-TGG---CCAATTTTAAAATTTTGAAAAATCCTGATA-A-ATTCC--------------CTTTAA----T--TGAAGATGCAAT---CTTTTTCAACACT
gi|1 : TCAAAGACA--GTAT-----ATCA---------GGAAAAATTGCT-----TAATTGTCT-A--AAAAT-----------------TCG-TT-T-T--AAAATTCGATAAAAAAGGATCTCATTTGCATGAAGAT-GT-AA-A--
gi|1 : ttttcataaaaaaatgttttaaatgttcaacaaatgaaatttattcaATTCTACAATATGT---AGCC----T-----ATTTG-AT---GTATCAAA-TTGAAATCAAAA-TGAAAT---GCGACTC-TTTTATGTCAATAAATGTTTCAATTCAAGCAGGAAATCTATTTCAGTCTAACCTGG-GCACGTAGGCCAAGTTAGGAATTTAACCCGGGCATGTAGGCCAA-GCTAGGAATAACCTTATCAGTATATTATTTCA-TATGTTTGAATAGATATCCTAATGACAGTACAGGACCAGGTAATATAAA---TCGGAAT----CATATTGT-GGAA-AAAAAATG--TTT-TGGGGACCAATTTTA--------AAAAACCCTGATATA-GTTGCATTGTTGTAGATAACTTTAAACGTT--TAAAAGTGCAATACCCTTTTCCAAaacaatatttcaatttaagtcggaggaaattgaaacaaaatttctaactctaaaaatagatagcacactaatactgcttaatgacctttacctcatcattcggactttttctaagatggaaataaattctacaatatgtagcctatttgatgtatcaaattgaaatcaaaatgaaatgcgactcttttatgtcaataaatgtttcaattcaagcaggaaatctatttcagtctaacctgggcacgtaggccaagttaggaatttaacccgggcatgtaggccaagctaggaataaccttatcagtatattatttcatatgtttgaatagatatcctaatgacagtacaggaccaggtaatataaatcggaatcatattgtggaaaaaaaatgttttggggaccaattttaaaaaaccctgatatagttgcattgttgtagataactttaaacgtttaaaagtgcaatacccttttccaa
gi|10 : ttttcataaaaaaatgttttaaatgttcaacaaatgaaatttattcatcaaagacagtatatcaggaaaaattgcttaattgtctaaaaattcgttttaaaattcgataaaaaaggatctcatttgcatgaagatgtaaaaacaatatttcaatttaagtcggaggaaattgaaacaaaatttctaactctaaaaatagatagcacactaatactgcttaatgacctttacctcatcattcggactttttctaagatggaaataaAAATGGA--GTAT-----ATCA---------GGGAAAAACGCT----ATAAATGTCTAT--AAAATGTCTAAAGAAA-TAAAATTA-TT-T-TTAAAAA-TG-AC-ATAAAGCATCCAATTATGATTAATAA-ATTAA-A--TTGTAATTGTTTGGTATGTCG------CCAAA-CATGACAAACTTGATATATTTGAATTG---T---A--A----ACTTGA------A---------ACGA------AATCCTCATTCTAAAG---AT---AGACAG--T-----ACTTA-AATACTGATTGAA-
gi|11 : TAGCCTGGTTAAATAGGTATCCTTACGGCAATATGTGGCCAGTGAGTATATAATATAGGCATAATCGATAAATT-TG-A-AAACA-TG--TTT-TGG---TCAATATCAAAGTTTTGAAAAATCCCGATA-T-ACTTC--------------CT--------T--TGAAG------T---CATTTTCAACACTgacattcacatcatcat
gi|12 : agtttagacTAAAGAGA--GTAT-----ATCA---------ATAAAAA---C---------ATGTCT-T--AAAA-----------A-TTAAATTATTT-T-T--GAAA-TGGAT-AAAAAACAT---ATCATC-TTCATA-----AA-G--TCCGAAAGGTTTGGAATGTTGAAACCATTAAAA--TGACAAAATCAATAT--TTAAATTAGAGTG----------------------------------GT------AATCCAGATTCTAAAA---Agagtatcaaaaatttatataagatttccagctttattg
gi|13 : ACTCAACTTTTTTGAT--------TGGA-----------TATAAAATATATTGCACTTT----TGA-TAAGGAAACTTATTTTAA---TCTAAa
gi|15 : ----GATATATT-TG-A-AAAAGAAA--TT----------AACTTAAATTTTTTGAAAAATCCTGATATATATTCC--------------CTTTA
gi|16 : AAAAATA--CT---GG---TCAATCTTAAAATTTTGAAAAATCCTGATA-
gi|2 : gtTTAAAGGGA--GTAT-----ATCA---------GACAAAAACGCTC----TAACTGTCT-TTAAAAAT----------A-TATATTTT-TT-T-T--AAAA-TGGTT-AAAATACATCTCATTATCATTGATAA-AT-AA-AA-TCCGAATGACTTAGTATGTAAAATCCACCAAAATGTGACAACATTGATAT--TTAAATTGGAGTGGTA--A----TCTTGA------A---------ACGA------AATCCACATTCTAAAA---AT---AGACAT--A-----ACTTA-AAAACt
gi|2 : -----ACTTGTATAACTAATCAAAATTGAAATCAAAA-TGAAATCACGTGACTCATTTAAT--------ACGT-----------CACAAAATATGTTGCAA-TT----TAA-GCAGGGAATCAATTTTAG---TTTTACCTAGGCGCGTAGCCCAA--TTAGGAAATCCCTTTTCAATACATTATTTTGGCATTTTTAAATATATGTTCTTTTGGCAATAACGCGTAAGTGAGTATA------AG---T----GGTTTATTGGG-A-AGGAAATG--CTCAAAG---CCAATTTTAAAAGTTTTAAAAATCCTGATA-A-ATTGG--------------CTTTtacaagacggcatcattattcttactctttctaagattaactagtgtttactagttgtaaacttgtataactaatcaaaattgaaatcaaaatgaaatcacgtgactcatttaatacgtcacaaaatatgttgcaatttaagcagggaatcaattttagttttacctaggcgcgtagcccaattaggaaatcccttttcaatacattattttggcatttttaaatatatgttcttttggcaataacgcgtaagtgagtataagtggtttattgggaaggaaatgctcaaagccaattttaaaagttttaaaaatcctgataaattggcttt
gi|3 : ttaaagggagtatatcagacaaaaacgctctaactgtctttaaaaatatatattttttttaaaatggttaaaatacatctcattatcattgataaataaaatccgaatgacttagtatgtaaaatccaccaaaatgtgacaacattgatatttaaattggagtggtaatcttgaaacgaaatccacattctaaaaatagacataacttaaaaactacaagacggcatcattattcttactctttctaagattaactagtgtttactagttgtaaTTTAAGGGA--TCAT-----ATCA---------GGGAAAAACGCTT---ATGAATGTCT-C--AAAAT----------A-TGAAATTA-TT-A-T--AAAG-AAGAT-AAATAGCATCTCATTATCATTAATAAGAT-AA-A--TCCAAATGGTTTGATATGTCAAATTCACCAAAACATGACATAATCGATAT--TTGAATTGGAGTGCAA--A----ACTCGA------A---------ACGA------AGTCCCCATTCTAAAA---AT---AGACAT--C-----ACATA-ATTACGGATCATA-TTGAAATCAAAA-TGTAATGGCGTGACTCATTTGAT--------ACTT-----------CACAAAATATGTTGCAATTT----TAA-GCGGGAAATCTATTTTAG---TCTAACCTAGGCGCGTAACTCAA-GTTAGGAAATCCTTGTTCAATCTAATATTTTGGCATGTTTAAATAGATATCCGTTAGGCAATGCAGGGTCAGTGAGTATATA---TAGGGAC----GATATATT-GG-ATAAAAAATA--TGT-TAG---CCAATTTCAATTTTTTGAAAAATCCTGATA-A-ATTCC--------------CTTTAA----C--TGAA-ATGCAAT---CTTTTTCAATATT
gi|4 : TTAAAGGAA--AAAT-----ATCA---------TGAAAA-----TTGCAATAAATGTCT-T--AAAAA----------G-TAAAATTA-GTAT-T--AAAA-TTGAT-AAAAAGCATCCCATTATCATAAATAG-AT-AAGA--CCCGAATGGTTTGGTTTATTAAGTCCACCAAA-CGTGACAGAAACGATGT--TTCAGTCGGAGTG--ATGA----AATTGACTCTAAG---------ATGA------AA--CAAATTTTCCAAC--AT---AAA-----A-----ACCTGTATAACGGATTTAA-TTAAAATCAAAA-TAAAATCCCGTGACAAATTTAAT--------ACGT-----------CACAAAAAAT-TTGCCATTT----TAA-GCGGGAAATACATTCTAG---TCTTACTTCGGTGCGTAGCCCGA-GTTTGGAAA--CCTTTTTAACATATTAGTTTGGCATGTT-------------------------GGGGTCAATGAGTTTAT-----------------TATATA-GG----AAAAATGA-TTT-TGG---TCAATTTTAAAATTTTGAAAAACCCTGATA-T-ATTTC--------------CCTtttaacaacttccgaaatatgttttcatagtttgtatt
gi|5 : TTAAAGAGA--GTAT-----ATCACTAGAATCAGGAAAAAATGCT----ATAATCACCT-T--AAAAT----------A-TAA--TTA-TT-T-TG-AAAA-TGGAT-AAAAAGCACCTTATTTTCATTAATAA-AT-AA-AATTGCAAATGGTTTGGTATGTCAAATAAACCAAAATGTGA-AAAATCGATAT--ATAAACTAGAGTA--G--ACAGCACTTAA------ATACTGCTTGATGACCTTCAAATCACCACACAAACA---ATTTTAACTAT--GTGTAAACCTGTATAACAGATTATA-T--AAATAAAAAACGAAATCACGTGATTCATTTTAT--------ACGT-----------AACAAAGTATACTGCAATCT----TAA-GCAGGAAATCTATTTAAG---TCTATCCTTGGCGCATAGCACAATTTTAGGAAATCCCGTTACAATATATTATTTCGGAATGTTTTAATAGATATCCATTTGGCAATATGGGGTC
gi|6 : ta-ATGACGGATACAA-CTGAAATCAAAA-TGAAATAACGTGACTCATTTAAT--------ACGT-----------CACAAATTATGTTGCCATTA----TAAAGCAAGAAATCTATTTTAG---TCTAATCTAGGAGCGTAGCCCAA-ATAAGGAAAGCCCTTTTAAATATATTATTTTTGCATGTT
gi|6 : taaacaatttttactacgtttaaacatgtGTAATACGGGGTCAGTGAGTATATA---ATGCCAT----GGTATATT-GG-A-AAAAAATA--TTT-AAG---TC--------AATTTTGAAAAATCCTGATA-T-ATTTTA-------------TTTTAG----TCATAAAGATGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgtaatacggggtcagtgagtatataatgccatggtatattggaaaaaaatatttaagtcaattttgaaaaatcctgatatattttattttagtcataaagatgttactgagggtgtaagtgatgcagattttattttgtctgtacattaa
gi|7 : taaacaatttttactacgtttaaacatgtatgacggatacaactgaaatcaaaatgaaataacgtgactcatttaatacgtcacaaattatgttgccattataaagcaagaaatctattttagtctaatctaggagcgtagcccaaataaggaaagcccttttaaatatattatttttgcatgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncATCAAAA-CAATTTCACGTGA----TTTAAT--------ACGT-----------CACCAAATAATTGGCACTTT----TAA-GAGGGGAATCTTCTTTAA---TATGACCTAGGCGCGTAGCCAAA-GTTAGGAAACTCCTTTTAAATATATTG-TTTGGTTTGTTTAAATAGATATACATTTGACAATACGGAGTCAGTGAGTATATA---TAGCCAT----AATATTTT-G----AAAAAATGATTTT-TGT---TTTATTATAAAA-TTTGAAAAATCCTGATC-A-ATTTC--------------CTTTAA----ttactgagggtgtaagtgatgcagattttattttgtctgtacattaa
gi|8 : atgaactctaactattacgaaaccatttaactacctataaacctatatagctaattaaaatttct-ATAACGGATCAAA-TT------------GAAATCACGCAACTCATTTTAT--------AAGT-----------CACAAAATGTGTTGCACTTT----TAA-ACGGGAAATCTATTTTAA---TCTAACCCTGA-ATGTAGCTCAA-GTTAGGAAATCCCTATTCAATATATTATTTTGGCATGTTTAAATAGATATTCATTTTGTAATTCAGGGTCAGTGAGTATATA---TGGACAT----GATATATT-AG-A-AAAATATGT-TTT-TAG---CAAATTTTAAAAGATTGAACAATTCTGATA-A-AATCC--------------CTTAAA----atatgacaagaaatgttatattaatatgattatatgtaatccggacagttaccgttattttgtggatattt
gi|9 : AAAGGGAATGTATCATCTATCA---------AGATAAAACGCTT---TTAA-TGTCT-T--AAAAA----------AATAAATTTA-TT-TAT--AAAA-TGGGT-AAAAA------CATTAC--------A-AT-AT-A--TC--ACT---------------ATCTAGCAAAACGTGGCAAACTCGATAT--TTAAAATGTAGTATCC--A----ACTTGA------A---------ATGA------AAACCCAATTCTAAAA---AT---AAAAATAGC-----ACTTA-Aatat
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): ACATTTTATAAGCGATAAATCTGGACGATATGTCACGGGTACTCCATTTTTTTGAAAATAGTT
Unaligned ( gi|17 ): ATTTTTATCATGAACATGAAATATCACATAAAAAA
Alignments
lowQualScore : 11111 222222222 22222 2222222222222 11 11 555555555555555555555555555555555 111111 111 111 22222222222 1 11111111 22222222222 1111111111111111 11 111 33333333333333 2222222 11 222
lowQualScore : 66 22222 000000000 33 99999 6 8888 9999999999999 33 5 5 5 11 5 5 0 0 0 0 77 5 5 11 22 0 555 66 77 0 555555555555555555555555555555555 0 666666 1 11 333 000 77777777777 2 3 5 3 88 2 0 2 1 66666666 11111111111 3 0 9999 4 777 1 1 66 5 0 0 2 0 7777777777777777 4 888 33 888888888 33 222 2 00000000000000 2222222 33 333
lowQualScore : .. ..... ......... .. ..... . .... ............. .. . . . .. . . . . . . .. . . .. .. . ... .. .. . ................................. . ...... . .. ... ... ........... . . . . .. . . . . ........ ........... . . .... . ... . . .. . . . . . ................ . ... .. ......... .. ... . .............. ....... .. ...
lowQualScore : 99 55555 000000000 66 44444 6 0000 5555555555555 66 0 0 0 99 0 0 2 8 1 2 22 0 0 99 44 7 999 77 99 7 777777777777777777777777777777777 4 444444 7 77 888 000 11111111111 0 9 0 0 11 5 7 0 0 11111111 11111111111 7 7 4444 4 888 0 4 44 2 1 2 8 5 2222222222222222 4 000 55 777777777 22 111 7 66666666666666 7777777 55 333
consensus : TTAAAGGGA--GTAT-----ATCA---------GGAAAAAACGCTT---ATAAATGTCT-T--AAAAT----------A-TAAAATTA-TT-T-T--AAAA-TGGAT-AAAAAGCATCTCATTATCATTAATAA-AT-AA-A--TCCGAATGGTTTGGTATGTCGAATCCACCAAAACGTGACAAAATCGATAT--TTAAATTGGAGTG--A--A----ACTTGA------A---------ACGA------AATCCNCATTCTAAAA---AT---AGACAT--N-----ACTTG-ATAACGGATCAAA-TTGAAATCAAAA-CGAAATCACGCGACTCATTTNAT--------ACGT-----------CACAAAATATGTTGCAATTT----TAA-GCGGGAAATCTATTTTAG---TCTAACCTNGGCGCGTAGCCCAA-GTTAGGAAATCCCTTTTCAATATATTATTTTGGCATGTTTAAATAGATATCCNTTTGGCAATACGGGGTCAGTGAGTATATA---TAGGCAT----GATATATT-GG-A-AAAAAATG--TTT-TGG---CCAATTTTAAAATTTTGAAAAATCCTGATA-A-ATTCC--------------CTTTAA----T--TGAAGATGCAAT---CTTTTTCAACACT
Reference ( family-1473 ) : TTAAAGGGA--GTAT-----ATCA---------GGAAAAAACGCTT---ATAAATGTCT-T--AAAAT----------A-TAAAATTA-TT-T-T--AAAA-TGGAT-AAAAAGCATCTCATTATCATTAATAA-AT-AA-A--TCCGAATGGTTTGGTATGTCGAATCCACCAAAACGTGACAAAATCGATAT--TTAAATTGGAGTG--A--A----ACTTGA------A---------ACGA------AATCCNCATTCTAAAA---AT---AGACAT--N-----ACTTG-ATAACGGATCAAA-TTGAAATCAAAA-CGAAATCACGCGACTCATTTNAT--------ACGT-----------CACAAAATATGTTGCAATTT----TAA-GCGGGAAATCTATTTTAG---TCTAACCTNGGCGCGTAGCCCAA-GTTAGGAAATCCCTTTTCAATATATTATTTTGGCATGTTTAAATAGATATCCNTTTGGCAATACGGGGTCAGTGAGTATATA---TAGGCAT----GATATATT-GG-A-AAAAAATG--TTT-TGG---CCAATTTTAAAATTTTGAAAAATCCTGATA-A-ATTCC--------------CTTTAA----T--TGAAGATGCAAT---CTTTTTCAACACT
gi|1 : TCAAAGACA--GTAT-----ATCA---------GGAAAAATTGCT-----TAATTGTCT-A--AAAAT-----------------TCG-TT-T-T--AAAATTCGATAAAAAAGGATCTCATTTGCATGAAGAT-GT-AA-A--
gi|1 : ttttcataaaaaaatgttttaaatgttcaacaaatgaaatttattcaATTCTACAATATGT---AGCC----T-----ATTTG-AT---GTATCAAA-TTGAAATCAAAA-TGAAAT---GCGACTC-TTTTATGTCAATAAATGTTTCAATTCAAGCAGGAAATCTATTTCAGTCTAACCTGG-GCACGTAGGCCAAGTTAGGAATTTAACCCGGGCATGTAGGCCAA-GCTAGGAATAACCTTATCAGTATATTATTTCA-TATGTTTGAATAGATATCCTAATGACAGTACAGGACCAGGTAATATAAA---TCGGAAT----CATATTGT-GGAA-AAAAAATG--TTT-TGGGGACCAATTTTA--------AAAAACCCTGATATA-GTTGCATTGTTGTAGATAACTTTAAACGTT--TAAAAGTGCAATACCCTTTTCCAAaacaatatttcaatttaagtcggaggaaattgaaacaaaatttctaactctaaaaatagatagcacactaatactgcttaatgacctttacctcatcattcggactttttctaagatggaaataaattctacaatatgtagcctatttgatgtatcaaattgaaatcaaaatgaaatgcgactcttttatgtcaataaatgtttcaattcaagcaggaaatctatttcagtctaacctgggcacgtaggccaagttaggaatttaacccgggcatgtaggccaagctaggaataaccttatcagtatattatttcatatgtttgaatagatatcctaatgacagtacaggaccaggtaatataaatcggaatcatattgtggaaaaaaaatgttttggggaccaattttaaaaaaccctgatatagttgcattgttgtagataactttaaacgtttaaaagtgcaatacccttttccaa
gi|10 : ttttcataaaaaaatgttttaaatgttcaacaaatgaaatttattcatcaaagacagtatatcaggaaaaattgcttaattgtctaaaaattcgttttaaaattcgataaaaaaggatctcatttgcatgaagatgtaaaaacaatatttcaatttaagtcggaggaaattgaaacaaaatttctaactctaaaaatagatagcacactaatactgcttaatgacctttacctcatcattcggactttttctaagatggaaataaAAATGGA--GTAT-----ATCA---------GGGAAAAACGCT----ATAAATGTCTAT--AAAATGTCTAAAGAAA-TAAAATTA-TT-T-TTAAAAA-TG-AC-ATAAAGCATCCAATTATGATTAATAA-ATTAA-A--TTGTAATTGTTTGGTATGTCG------CCAAA-CATGACAAACTTGATATATTTGAATTG---T---A--A----ACTTGA------A---------ACGA------AATCCTCATTCTAAAG---AT---AGACAG--T-----ACTTA-AATACTGATTGAA-
gi|11 : TAGCCTGGTTAAATAGGTATCCTTACGGCAATATGTGGCCAGTGAGTATATAATATAGGCATAATCGATAAATT-TG-A-AAACA-TG--TTT-TGG---TCAATATCAAAGTTTTGAAAAATCCCGATA-T-ACTTC--------------CT--------T--TGAAG------T---CATTTTCAACACTgacattcacatcatcat
gi|12 : agtttagacTAAAGAGA--GTAT-----ATCA---------ATAAAAA---C---------ATGTCT-T--AAAA-----------A-TTAAATTATTT-T-T--GAAA-TGGAT-AAAAAACAT---ATCATC-TTCATA-----AA-G--TCCGAAAGGTTTGGAATGTTGAAACCATTAAAA--TGACAAAATCAATAT--TTAAATTAGAGTG----------------------------------GT------AATCCAGATTCTAAAA---Agagtatcaaaaatttatataagatttccagctttattg
gi|13 : ACTCAACTTTTTTGAT--------TGGA-----------TATAAAATATATTGCACTTT----TGA-TAAGGAAACTTATTTTAA---TCTAAa
gi|15 : ----GATATATT-TG-A-AAAAGAAA--TT----------AACTTAAATTTTTTGAAAAATCCTGATATATATTCC--------------CTTTA
gi|16 : AAAAATA--CT---GG---TCAATCTTAAAATTTTGAAAAATCCTGATA-
gi|2 : gtTTAAAGGGA--GTAT-----ATCA---------GACAAAAACGCTC----TAACTGTCT-TTAAAAAT----------A-TATATTTT-TT-T-T--AAAA-TGGTT-AAAATACATCTCATTATCATTGATAA-AT-AA-AA-TCCGAATGACTTAGTATGTAAAATCCACCAAAATGTGACAACATTGATAT--TTAAATTGGAGTGGTA--A----TCTTGA------A---------ACGA------AATCCACATTCTAAAA---AT---AGACAT--A-----ACTTA-AAAACt
gi|2 : -----ACTTGTATAACTAATCAAAATTGAAATCAAAA-TGAAATCACGTGACTCATTTAAT--------ACGT-----------CACAAAATATGTTGCAA-TT----TAA-GCAGGGAATCAATTTTAG---TTTTACCTAGGCGCGTAGCCCAA--TTAGGAAATCCCTTTTCAATACATTATTTTGGCATTTTTAAATATATGTTCTTTTGGCAATAACGCGTAAGTGAGTATA------AG---T----GGTTTATTGGG-A-AGGAAATG--CTCAAAG---CCAATTTTAAAAGTTTTAAAAATCCTGATA-A-ATTGG--------------CTTTtacaagacggcatcattattcttactctttctaagattaactagtgtttactagttgtaaacttgtataactaatcaaaattgaaatcaaaatgaaatcacgtgactcatttaatacgtcacaaaatatgttgcaatttaagcagggaatcaattttagttttacctaggcgcgtagcccaattaggaaatcccttttcaatacattattttggcatttttaaatatatgttcttttggcaataacgcgtaagtgagtataagtggtttattgggaaggaaatgctcaaagccaattttaaaagttttaaaaatcctgataaattggcttt
gi|3 : ttaaagggagtatatcagacaaaaacgctctaactgtctttaaaaatatatattttttttaaaatggttaaaatacatctcattatcattgataaataaaatccgaatgacttagtatgtaaaatccaccaaaatgtgacaacattgatatttaaattggagtggtaatcttgaaacgaaatccacattctaaaaatagacataacttaaaaactacaagacggcatcattattcttactctttctaagattaactagtgtttactagttgtaaTTTAAGGGA--TCAT-----ATCA---------GGGAAAAACGCTT---ATGAATGTCT-C--AAAAT----------A-TGAAATTA-TT-A-T--AAAG-AAGAT-AAATAGCATCTCATTATCATTAATAAGAT-AA-A--TCCAAATGGTTTGATATGTCAAATTCACCAAAACATGACATAATCGATAT--TTGAATTGGAGTGCAA--A----ACTCGA------A---------ACGA------AGTCCCCATTCTAAAA---AT---AGACAT--C-----ACATA-ATTACGGATCATA-TTGAAATCAAAA-TGTAATGGCGTGACTCATTTGAT--------ACTT-----------CACAAAATATGTTGCAATTT----TAA-GCGGGAAATCTATTTTAG---TCTAACCTAGGCGCGTAACTCAA-GTTAGGAAATCCTTGTTCAATCTAATATTTTGGCATGTTTAAATAGATATCCGTTAGGCAATGCAGGGTCAGTGAGTATATA---TAGGGAC----GATATATT-GG-ATAAAAAATA--TGT-TAG---CCAATTTCAATTTTTTGAAAAATCCTGATA-A-ATTCC--------------CTTTAA----C--TGAA-ATGCAAT---CTTTTTCAATATT
gi|4 : TTAAAGGAA--AAAT-----ATCA---------TGAAAA-----TTGCAATAAATGTCT-T--AAAAA----------G-TAAAATTA-GTAT-T--AAAA-TTGAT-AAAAAGCATCCCATTATCATAAATAG-AT-AAGA--CCCGAATGGTTTGGTTTATTAAGTCCACCAAA-CGTGACAGAAACGATGT--TTCAGTCGGAGTG--ATGA----AATTGACTCTAAG---------ATGA------AA--CAAATTTTCCAAC--AT---AAA-----A-----ACCTGTATAACGGATTTAA-TTAAAATCAAAA-TAAAATCCCGTGACAAATTTAAT--------ACGT-----------CACAAAAAAT-TTGCCATTT----TAA-GCGGGAAATACATTCTAG---TCTTACTTCGGTGCGTAGCCCGA-GTTTGGAAA--CCTTTTTAACATATTAGTTTGGCATGTT-------------------------GGGGTCAATGAGTTTAT-----------------TATATA-GG----AAAAATGA-TTT-TGG---TCAATTTTAAAATTTTGAAAAACCCTGATA-T-ATTTC--------------CCTtttaacaacttccgaaatatgttttcatagtttgtatt
gi|5 : TTAAAGAGA--GTAT-----ATCACTAGAATCAGGAAAAAATGCT----ATAATCACCT-T--AAAAT----------A-TAA--TTA-TT-T-TG-AAAA-TGGAT-AAAAAGCACCTTATTTTCATTAATAA-AT-AA-AATTGCAAATGGTTTGGTATGTCAAATAAACCAAAATGTGA-AAAATCGATAT--ATAAACTAGAGTA--G--ACAGCACTTAA------ATACTGCTTGATGACCTTCAAATCACCACACAAACA---ATTTTAACTAT--GTGTAAACCTGTATAACAGATTATA-T--AAATAAAAAACGAAATCACGTGATTCATTTTAT--------ACGT-----------AACAAAGTATACTGCAATCT----TAA-GCAGGAAATCTATTTAAG---TCTATCCTTGGCGCATAGCACAATTTTAGGAAATCCCGTTACAATATATTATTTCGGAATGTTTTAATAGATATCCATTTGGCAATATGGGGTC
gi|6 : ta-ATGACGGATACAA-CTGAAATCAAAA-TGAAATAACGTGACTCATTTAAT--------ACGT-----------CACAAATTATGTTGCCATTA----TAAAGCAAGAAATCTATTTTAG---TCTAATCTAGGAGCGTAGCCCAA-ATAAGGAAAGCCCTTTTAAATATATTATTTTTGCATGTT
gi|6 : taaacaatttttactacgtttaaacatgtGTAATACGGGGTCAGTGAGTATATA---ATGCCAT----GGTATATT-GG-A-AAAAAATA--TTT-AAG---TC--------AATTTTGAAAAATCCTGATA-T-ATTTTA-------------TTTTAG----TCATAAAGATGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgtaatacggggtcagtgagtatataatgccatggtatattggaaaaaaatatttaagtcaattttgaaaaatcctgatatattttattttagtcataaagatgttactgagggtgtaagtgatgcagattttattttgtctgtacattaa
gi|7 : taaacaatttttactacgtttaaacatgtatgacggatacaactgaaatcaaaatgaaataacgtgactcatttaatacgtcacaaattatgttgccattataaagcaagaaatctattttagtctaatctaggagcgtagcccaaataaggaaagcccttttaaatatattatttttgcatgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncATCAAAA-CAATTTCACGTGA----TTTAAT--------ACGT-----------CACCAAATAATTGGCACTTT----TAA-GAGGGGAATCTTCTTTAA---TATGACCTAGGCGCGTAGCCAAA-GTTAGGAAACTCCTTTTAAATATATTG-TTTGGTTTGTTTAAATAGATATACATTTGACAATACGGAGTCAGTGAGTATATA---TAGCCAT----AATATTTT-G----AAAAAATGATTTT-TGT---TTTATTATAAAA-TTTGAAAAATCCTGATC-A-ATTTC--------------CTTTAA----ttactgagggtgtaagtgatgcagattttattttgtctgtacattaa
gi|8 : atgaactctaactattacgaaaccatttaactacctataaacctatatagctaattaaaatttct-ATAACGGATCAAA-TT------------GAAATCACGCAACTCATTTTAT--------AAGT-----------CACAAAATGTGTTGCACTTT----TAA-ACGGGAAATCTATTTTAA---TCTAACCCTGA-ATGTAGCTCAA-GTTAGGAAATCCCTATTCAATATATTATTTTGGCATGTTTAAATAGATATTCATTTTGTAATTCAGGGTCAGTGAGTATATA---TGGACAT----GATATATT-AG-A-AAAATATGT-TTT-TAG---CAAATTTTAAAAGATTGAACAATTCTGATA-A-AATCC--------------CTTAAA----atatgacaagaaatgttatattaatatgattatatgtaatccggacagttaccgttattttgtggatattt
gi|9 : AAAGGGAATGTATCATCTATCA---------AGATAAAACGCTT---TTAA-TGTCT-T--AAAAA----------AATAAATTTA-TT-TAT--AAAA-TGGGT-AAAAA------CATTAC--------A-AT-AT-A--TC--ACT---------------ATCTAGCAAAACGTGGCAAACTCGATAT--TTAAAATGTAGTATCC--A----ACTTGA------A---------ATGA------AAACCCAATTCTAAAA---AT---AAAAATAGC-----ACTTA-Aatat
blockSeqs : AT CATCT CTAGAATCA AC TGCAA A TTA TGTCTAAAGAAA AA T A A TA . . AG T G AT CG TGA AT . AGACAGCACTTAAATACTGCTTG CCTTCA T AG C TTT TATGTGTAA T T A G AC C T G . . A . A . A C TT T T TAATATAGGCATAATC G AT AT CAAAGC GT TAT T A TCA GA .
blockSeqs : . . . AC TA A AT AAA AA . . . G . . A . . A CG AAA AC . GATGAAATTGACTCTAAG . T AC . . AATAGC T A . G T G A A . . G . . . A C G T T TATAGGGAC . A A TTGGT TT T C . T G .
blockSeqs : . . . AC TT C T TA AT . . . . . . A . . . CA CAA AT . GGTAATCTTGAA . T CC . . CAGT T A . A T C A G . . G . . . C T G T G TAATGCCAT . A T TTAGC AT A G . C A
blockSeqs : . . . AT A A C TA AA . . . . . . G . . . CG TAA AC . GCAAAACTCGAA . T AA . . CATA . T . G T C A A . . A . . . T C A G A TATAGCCAT . A . TTGGT AG A C .
blockSeqs : . . . AC C A T AG AA . . . . . . A . . . CA CAA A . ATCCAACTTGAA . A CC . . CATC . A . . T A A T . . G . . . A A G C A TATGGACAT . A . TAAGT TT T T .
blockSeqs : . . . . A T T TA AT . . . . . . A . . . . . C . G . . CA . . A . A . . C C A A . . T . . . A C G T A AGT . A . TTGTT AT T T .
blockSeqs : . . . . . . T A . . . . . . . . . . . . . G . . C A A . . G . . . T . . . . T . . . TTAGC AT A T .
blockSeqs : . A . T . . . . . . . . . GGT AG A C .
blockSeqs : . . . A
blockSeqCons : TA*** TA*********** AA CAA AC ** GNNAAACTTGAA********************* *** CATA******* ******** *********** **** *** A** TTGGT**** AT N** **************
originalCons : TTAAAGGGA--GTAT-----ATCA---------GGAAAAAACGCTT---ATAAATGTCT-T--AAAAT----------A-TAAAATTA-TT-T-T--AAAA-TGGAT-AAAAAGCATCTCATTATCATTAATAA-AT-AA-A--TCCGAATGGTTTGGTATGTCGAATCCACCAAAACGTGACAAAATCGATAT--TTAAATTGGAGTG--A--A----ACTTGA------A---------ACGA------AATCCNCATTCTAAAA---AT---AGACAT--N-----ACTTG-ATAACGGATCAAA-TTGAAATCAAAA-CGAAATCACGCGACTCATTTNAT--------ACGT-----------CACAAAATATGTTGCAATTT----TAA-GCGGGAAATCTATTTTAG---TCTAACCTNGGCGCGTAGCCCAA-GTTAGGAAATCCCTTTTCAATATATTATTTTGGCATGTTTAAATAGATATCCNTTTGGCAATACGGGGTCAGTGAGTATATA---TAGGCAT----GATATATT-GG-A-AAAAAATG--TTT-TGG---CCAATTTTAAAATTTTGAAAAATCCTGATA-A-ATTCC--------------CTTTAA----T--TGAAGATGCAAT---CTTTTTCAACACT
finalCons : TTAAAGGGA--GTAT-----ATCA---------GGAAAAAACGCTTA---TAAATGTCT-T--AAAATA-----------TAAAATTA-TT-T-T--AAAA-TGGAT-AAAAAGCATCTCATTATCATTAATAA-AT-AA-A--TCCGAATGGTTTGGTATGTCAAATCCACCAAAACGTGACAAAATCGATAT--TTAAATTGGAGTGNNAAACTTGAA---------------------ACGA------AATCCNCATTCTAAAA---AT---AGACATA-------ACTTG-ATAACGGATCAAA-TTGAAATCAAAA-CGAAATCACGCGACTCATTTNAT--------ACGT-----------CACAAAATATGTTGCAATTT----TAA-GCGGGAAATCTATTTTAG---TCTAACCTNGGCGCGTAGCCCAA-GTTAGGAAATCCCTTTTCAATATATTATTTTGGCATGTTTAAATAGATATCCNTTTGGCAATACGGGGTCAGTGAGTATATA---TAGGCAT----GATATATT-GGA--AAAAAATG--TTTTGGT----CAATTTTAAAATTTTGAAAAATCCTGATAN--ATTCC--------------CTTTAA----T--TGAAGATGCAAT---CTTTTTCAACACT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): ACATTTTATAAGCGATAAATCTGGACGATATGTCACGGGTACTCCATTTTTTTGAAAATAGTT
Unaligned ( gi|17 ): ATTTTTATCATGAACATGAAATATCACATAAAAAA
Alignments
lowQualScore : 11111 222222222 33333 1111 22222222222 11 11 1111111 3333333333333333 111111 111 11111111 1 11111111 22222222222 1111111111111111 11 33333333333333 2222222 11 222
lowQualScore : 66 22222 000000000 33 22222 0 3333 55555555555 33 5 5 5 11 5 5 0 0 0 0 77 5 5 11 22 1 888 66 77 0 1111111 5555555555555555 0 666666 1 11 5 111 5 55555555 0 6 3 5 3 88 2 0 2 1 66666666 11111111111 3 0 9999 4 777 1 1 66 5 0 0 2 0 7777777777777777 4 888 33 88888888 33 55 1 4 2 00000000000000 2222222 33 333
lowQualScore : .. ..... ......... .. ..... . .... ........... .. . . . .. . . . . . . .. . . .. .. . ... .. .. . ....... ................ . ...... . .. . ... . ........ . . . . . .. . . . . ........ ........... . . .... . ... . . .. . . . . . ................ . ... .. ........ .. .. . . . .............. ....... .. ...
lowQualScore : 99 55555 000000000 66 22222 5 0000 55555555555 66 0 0 0 99 0 0 2 8 1 2 22 0 0 99 44 7 999 77 99 7 4444444 9999999999999999 4 444444 7 77 7 777 2 99999999 1 0 9 0 0 11 5 7 0 0 11111111 11111111111 7 7 4444 4 888 0 4 44 2 1 2 8 5 2222222222222222 4 000 55 22222222 22 55 0 4 7 66666666666666 7777777 55 333
consensus : TTAAAGGGA--GTAT-----ATCA---------GGAAAAAACGCTT---ATAAATGTCT-T--AAAAT----------ATAAAATTA-TT-T-T--AAAA-TGGAT-AAAAAGCATCTCATTATCATTAATAA-AT-AA-A--TCCGAATGGTTTGGTATGTCGAATCCACCAAAACGTGACAAAATCGATAT--TTAAATTGGAGT-GNTAA-ACTTGA------A---------ACGA------AATCCNCATTCTAAAA-AT---AGACAT-----A--ACTTGTATAACGGATCAAA-TTGAAATCAAAA-CGAAATCACGCGACTCATTTNAT--------ACGT-----------CACAAAATATGTTGCAATTT----TAA-GCGGGAAATCTATTTTAG---TCTAACCTNGGCGCGTAGCCCAA-GTTAGGAAATCCCTTTTCAATATATTATTTTGGCATGTTTAAATAGATATCCNTTTGGCAATACGGGGTCAGTGAGTATATA---TAGGCAT----GATATATT-GG-A-AAAAAATG--TTT-TGG---CCAATTTTAAAATTTTGAAAAATCCTG--ATANA-TTCC--------------CTTTAA----T--TGAAGATGCAAT---CTTTTTCAACACT
Reference ( family-1473 ) : TTAAAGGGA--GTAT-----ATCA---------GGAAAAAACGCTT---ATAAATGTCT-T--AAAAT----------ATAAAATTA-TT-T-T--AAAA-TGGAT-AAAAAGCATCTCATTATCATTAATAA-AT-AA-A--TCCGAATGGTTTGGTATGTCAAATCCACCAAAACGTGACAAAATCGATAT--TTAAATTGGAGT-GNNAA-ACTTGA------A---------ACGA------AATCCNCATTCTAAAA-AT---AGACAT-----A--ACTTG-ATAACGGATCAAA-TTGAAATCAAAA-CGAAATCACGCGACTCATTTNAT--------ACGT-----------CACAAAATATGTTGCAATTT----TAA-GCGGGAAATCTATTTTAG---TCTAACCTNGGCGCGTAGCCCAA-GTTAGGAAATCCCTTTTCAATATATTATTTTGGCATGTTTAAATAGATATCCNTTTGGCAATACGGGGTCAGTGAGTATATA---TAGGCAT----GATATATT-GG-A-AAAAAATG--TTT-TGG---TCAATTTTAAAATTTTGAAAAATCCTG--ATANA-TTCC--------------CTTTAA----T--TGAAGATGCAAT---CTTTTTCAACACT
gi|1 : TCAAAGACA--GTAT-----ATCA---------GGAAAAATTGCT-----TAATTGTCT-A--AAAAT----------------TCG-TT-T-T--AAAATTCGATAAAAAAGGATCTCATTTGCATGAAGAT-GT-AA-A--
gi|1 : ttttcataaaaaaatgttttaaatgttcaacaaatgaaatttattca--ATTTG-AT---GTATCAAA-TTGAAATCAAAA-TGAAAT---GCGACTC-TTTTATGTCAATAAATGTTTCAATTCAAGCAGGAAATCTATTTCAGTCTAACCTGG-GCACGTAGGCCAAGTTAGGAATTTAACCCGGGCATGTAGGCCAA-GCTAGGAATAACCTTATCAGTATATTATTTCA-TATGTTTGAATAGATATCCTAATGACAGTACAGGACCAGGTAATATAAA---TCGGAAT----CATATTGT-GGAA-AAAAAATG--TTT-TGGGGACCAATTTTA--------AAAAACCCTG--ATATAGTTGCATTGTTGTAGATAACTTTAAACGTT--TAAAAGTGCAATACCCTTTTCCAAaacaatatttcaatttaagtcggaggaaattgaaacaaaatttctaactctaaaaatagatagcacactaatactgcttaatgacctttacctcatcattcggactttttctaagatggaaataaattctacaatatgtagcctatttgatgtatcaaattgaaatcaaaatgaaatgcgactcttttatgtcaataaatgtttcaattcaagcaggaaatctatttcagtctaacctgggcacgtaggccaagttaggaatttaacccgggcatgtaggccaagctaggaataaccttatcagtatattatttcatatgtttgaatagatatcctaatgacagtacaggaccaggtaatataaatcggaatcatattgtggaaaaaaaatgttttggggaccaattttaaaaaaccctgatatagttgcattgttgtagataactttaaacgtttaaaagtgcaatacccttttccaa
gi|10 : ttttcataaaaaaatgttttaaatgttcaacaaatgaaatttattcatcaaagacagtatatcaggaaaaattgcttaattgtctaaaaattcgttttaaaattcgataaaaaaggatctcatttgcatgaagatgtaaaaacaatatttcaatttaagtcggaggaaattgaaacaaaatttctaactctaaaaatagatagcacactaatactgcttaatgacctttacctcatcattcggactttttctaagatggaaataaattctacaatatgtagcctAAATGGA--GTAT-----ATCA---------GGGAAAAACGCT----ATAAATGTCTAT--AAAATGTCTAAAGAAATAAAATTA-TT-T-TTAAAAA-TG-AC-ATAAAGCATCCAATTATGATTAATAA-ATTAA-A--TTGTAATTGTTTGGTATGTCG------CCAAA-CATGACAAACTTGATATATTTGAATTG-------TAA-ACTTGA------A---------ACGA------AATCCTCATTCTAAAG-AT---AGACAG-----T--ACTTA-AATACTGATTGAA-
gi|11 : TAGCCTGGTTAAATAGGTATCCTTACGGCAATATGTGGCCAGTGAGTATATAATATAGGCATAATCGATAAATT-TG-A-AAACA-TG--TTT-TGG---TCAATATCAAAGTTTTGAAAAATCCCG--ATATA-CTTC--------------CT--------T--TGAAG------T---CATTTTCAACACTgacattcacatcatcat
gi|12 : agtttagacTAAAGAGA--GTAT-----ATCA---------ATAAAAA---C---------ATGTCT-T--AAAA-----------ATTAAATTATTT-T-T--GAAA-TGGAT-AAAAAACAT---ATCATC-TTCATA-----AA-G--TCCGAAAGGTTTGGAATGTTGAAACCATTAAAA--TGACAAAATCAATAT--TTAAATTAGAGT-GGT-----------------------------------AATCCAGATTCTAAAA-Agagtatcaaaaatttatataagatttccagctttattg
gi|13 : ACTCAACTTTTTTGAT--------TGGA-----------TATAAAATATATTGCACTTT----TGA-TAAGGAAACTTATTTTAA---TCTAAa
gi|15 : ----GATATATT-TG-A-AAAAGAAA--TT----------AACTTAAATTTTTTGAAAAATCCTGATATATA-TTCC--------------CTTTA
gi|16 : AAAAATA--CT---GG---TCAATCTTAAAATTTTGAAAAATCCTG--ATA
gi|2 : gtTTAAAGGGA--GTAT-----ATCA---------GACAAAAACGCTC----TAACTGTCT-TTAAAAAT----------ATATATTTT-TT-T-T--AAAA-TGGTT-AAAATACATCTCATTATCATTGATAA-AT-AA-AA-TCCGAATGACTTAGTATGTAAAATCCACCAAAATGTGACAACATTGATAT--TTAAATTGGAGT-GGTAA-TCTTGA------A---------ACGA------AATCCACATTCTAAAA-AT---AGACAT-----A--ACTTA-AAAACt
gi|2 : -----A--ACTTGTATAACTAATCAAAATTGAAATCAAAA-TGAAATCACGTGACTCATTTAAT--------ACGT-----------CACAAAATATGTTGCAA-TT----TAA-GCAGGGAATCAATTTTAG---TTTTACCTAGGCGCGTAGCCCAA--TTAGGAAATCCCTTTTCAATACATTATTTTGGCATTTTTAAATATATGTTCTTTTGGCAATAACGCGTAAGTGAGTATA------AG---T----GGTTTATTGGG-A-AGGAAATG--CTCAAAG---CCAATTTTAAAAGTTTTAAAAATCCTG--ATAAA-TTGG--------------CTTTtacaagacggcatcattattcttactctttctaagattaactagtgtttactagttgtaaacttgtataactaatcaaaattgaaatcaaaatgaaatcacgtgactcatttaatacgtcacaaaatatgttgcaatttaagcagggaatcaattttagttttacctaggcgcgtagcccaattaggaaatcccttttcaatacattattttggcatttttaaatatatgttcttttggcaataacgcgtaagtgagtataagtggtttattgggaaggaaatgctcaaagccaattttaaaagttttaaaaatcctgataaattggcttt
gi|3 : ttaaagggagtatatcagacaaaaacgctctaactgtctttaaaaatatatattttttttaaaatggttaaaatacatctcattatcattgataaataaaatccgaatgacttagtatgtaaaatccaccaaaatgtgacaacattgatatttaaattggagtggtaatcttgaaacgaaatccacattctaaaaatagacataacttaaaaactacaagacggcatcattattcttactctttctaagattaactagtgtttactagttgtaTTTAAGGGA--TCAT-----ATCA---------GGGAAAAACGCTT---ATGAATGTCT-C--AAAAT----------ATGAAATTA-TT-A-T--AAAG-AAGAT-AAATAGCATCTCATTATCATTAATAAGAT-AA-A--TCCAAATGGTTTGATATGTCAAATTCACCAAAACATGACATAATCGATAT--TTGAATTGGAGT-GCAAA-ACTCGA------A---------ACGA------AGTCCCCATTCTAAAA-AT---AGACAT-----C--ACATA-ATTACGGATCATA-TTGAAATCAAAA-TGTAATGGCGTGACTCATTTGAT--------ACTT-----------CACAAAATATGTTGCAATTT----TAA-GCGGGAAATCTATTTTAG---TCTAACCTAGGCGCGTAACTCAA-GTTAGGAAATCCTTGTTCAATCTAATATTTTGGCATGTTTAAATAGATATCCGTTAGGCAATGCAGGGTCAGTGAGTATATA---TAGGGAC----GATATATT-GG-ATAAAAAATA--TGT-TAG---CCAATTTCAATTTTTTGAAAAATCCTG--ATAAA-TTCC--------------CTTTAA----C--TGAA-ATGCAAT---CTTTTTCAATATT
gi|4 : TTAAAGGAA--AAAT-----ATCA---------TGAAAA-----TTGCAATAAATGTCT-T--AAAAA----------GTAAAATTA-GTAT-T--AAAA-TTGAT-AAAAAGCATCCCATTATCATAAATAG-AT-AAGA--CCCGAATGGTTTGGTTTATTAAGTCCACCAAA-CGTGACAGAAACGATGT--TTCAGTCGGAGT-GATGA-AATTGACTCTAAG---------ATGA------AA--CAAATTTTCCAACAT---AAA--------A--ACCTGTATAACGGATTTAA-TTAAAATCAAAA-TAAAATCCCGTGACAAATTTAAT--------ACGT-----------CACAAAAAAT-TTGCCATTT----TAA-GCGGGAAATACATTCTAG---TCTTACTTCGGTGCGTAGCCCGA-GTTTGGAAA--CCTTTTTAACATATTAGTTTGGCATGTT-------------------------GGGGTCAATGAGTTTAT-----------------TATATA-GG----AAAAATGA-TTT-TGG---TCAATTTTAAAATTTTGAAAAACCCTG--ATATA-TTTC--------------CCTtttaacaacttccgaaatatgttttcatagtttgtatt
gi|5 : TTAAAGAGA--GTAT-----ATCACTAGAATCAGGAAAAAATGCT----ATAATCACCT-T--AAAAT----------ATAA--TTA-TT-T-TG-AAAA-TGGAT-AAAAAGCACCTTATTTTCATTAATAA-AT-AA-AATTGCAAATGGTTTGGTATGTCAAATAAACCAAAATGTGA-AAAATCGATAT--ATAAACTAGAGTAGACAGCACTTAA------ATACTGCTTGATGACCTTCAAATCACCACACAAACA-ATTTTAACTATGTGTAA--ACCTGTATAACAGATTATA-T--AAATAAAAAACGAAATCACGTGATTCATTTTAT--------ACGT-----------AACAAAGTATACTGCAATCT----TAA-GCAGGAAATCTATTTAAG---TCTATCCTTGGCGCATAGCACAATTTTAGGAAATCCCGTTACAATATATTATTTCGGAATGTTTTAATAGATATCCATTTGGCAATATGGGGTC
gi|6 : ta-----A--ACATGTATGACGGATACAA-CTGAAATCAAAA-TGAAATAACGTGACTCATTTAAT--------ACGT-----------CACAAATTATGTTGCCATTA----TAAAGCAAGAAATCTATTTTAG---TCTAATCTAGGAGCGTAGCCCAA-ATAAGGAAAGCCCTTTTAAATATATTATTTTTGCATGTT
gi|6 : taaacaatttttactacgtttaGTAATACGGGGTCAGTGAGTATATA---ATGCCAT----GGTATATT-GG-A-AAAAAATA--TTT-AAG---TC--------AATTTTGAAAAATCCTG--ATATA-TTTTA-------------TTTTAG----TCATAAAGATGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgtaatacggggtcagtgagtatataatgccatggtatattggaaaaaaatatttaagtcaattttgaaaaatcctgatatattttattttagtcataaagatgttactgagggtgtaagtgatgcagattttattttgtctgtacattaa
gi|7 : taaacaatttttactacgtttaaacatgtatgacggatacaactgaaatcaaaatgaaataacgtgactcatttaatacgtcacaaattatgttgccattataaagcaagaaatctattttagtctaatctaggagcgtagcccaaataaggaaagcccttttaaatatattatttttgcatgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncATCAAAA-CAATTTCACGTGA----TTTAAT--------ACGT-----------CACCAAATAATTGGCACTTT----TAA-GAGGGGAATCTTCTTTAA---TATGACCTAGGCGCGTAGCCAAA-GTTAGGAAACTCCTTTTAAATATATTG-TTTGGTTTGTTTAAATAGATATACATTTGACAATACGGAGTCAGTGAGTATATA---TAGCCAT----AATATTTT-G----AAAAAATGATTTT-TGT---TTTATTATAAAA-TTTGAAAAATCCTG--ATCAA-TTTC--------------CTTTAA----ttactgagggtgtaagtgatgcagattttattttgtctgtacattaa
gi|8 : atgaactctaactattacgaaaccatttaactacctataaacctatatagctaattaaaatttct-ATAACGGATCAAA-TT------------GAAATCACGCAACTCATTTTAT--------AAGT-----------CACAAAATGTGTTGCACTTT----TAA-ACGGGAAATCTATTTTAA---TCTAACCCTGA-ATGTAGCTCAA-GTTAGGAAATCCCTATTCAATATATTATTTTGGCATGTTTAAATAGATATTCATTTTGTAATTCAGGGTCAGTGAGTATATA---TGGACAT----GATATATT-AG-A-AAAATATGT-TTT-TAG---CAAATTTTAAAAGATTGAACAATTCTG--ATAAA-ATCC--------------CTTAAA----atatgacaagaaatgttatattaatatgattatatgtaatccggacagttaccgttattttgtggatattt
gi|9 : AAAGGGAATGTATCATCTATCA---------AGATAAAACGCTT----TTAATGTCT-TA-AAAAA----------ATAAATTTA-TT-TAT--AAAA-TGGGT-AAAAA------CATTAC--------A-AT-AT-A--TC---ACTATCTAG-----CAAA---------ACGTGGCAAACTCGATAT--TTAAAATGTAGT-ATCCA-ACTTGA------A---------ATGA------AAACCCAATTCTAAAA-AT---AAAAAT-----AGCACTTA-Aatat
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): ACATTTTATAAGCGATAAATCTGGACGATATGTCACGGGTACTCCATTTTTTTGAAAATAGTT
Unaligned ( gi|17 ): ATTTTTATCATGAACATGAAATATCACATAAAAAA