lowQualScore : 1 3333333
lowQualScore : 77 2 6 6 444 0000000 444 33 33 2 7 5 33
lowQualScore : .. . . . ... ....... ... .. .. . . . ..
lowQualScore : 99 6 0 9 444 9999999 111 22 22 4 5 7 44
consensus : GTATAAAAA--ATGTGATGTTCTTGTAG---AAGACT------AC---ATT--AAAATCATAATAT--TAAAAAA-TCTCCAAAC-TTTTCC--CCCAAATATTTCTTT
Reference ( gi|4 ) : GTATAAAAA--ATGTGGTGTTTTTGAAG---AAGACT------TC---ATT--AAAATCATAATAT--TAAAAAA-TCTCCAAAC-TTTCCC--CCCAAATATTTCTTT
gi|3 : GTATAAAAATAATGTGATGTTCTTGTAG---AAGACTACAA--TC---ATT--AAAGTCATAAAAT--TAAAAAA-TCTCCAAA--TTTCCC--CCCAAATATTT
gi|6 : GTATAAAAATAATGTGATGTTCT---AG---AAGACTACAA--TC---ATT--AAAGTCATAAAAT--TAAAAAA-TCTCCAAA--TTTCCC--CCCAAATATT
gi|11 : tGTATAAAAA--CTGCGATGTTCTTGTAG---AAGACT------TC---ATT--AAAATTATAATAT--CAAAAAA-TCT-------TTTCCC--ACCTAATATTTCTTT
gi|2 : tGTATAAAAA--ATGTGATGTTCTTGTAG---AAGACT------AC---ATCAAAAAATCACAATAC--TAAAAAT-TATCAAAAC-TTTTCC--TCCAAGTA-TTCTTT
gi|5 : tTATAAAAA--TTGTGATGTTCTTGTAG---GTGACT------AC---ATT--AAAATCATAATAT--TTAAAAA-TCTCTAAAC-TTTACC--CCCAAATATTTCTTT
gi|7 : TATAAAAA--GTGTGATGTTCTTGTAG---GAGACT------AC---ATT--AAAATTATAATAT--TTAAAAA-TCTCC-AAC-TTTTCC--CACAAATATTTCTT
gi|13 : TATAAAAA--ATGTGATGTTCTTGTAG---ATTATT------AC---ATT--AAAATCATAATAT--TAAAAAA-TCTTCAGAT-TTTTCG--TCCAAATA
gi|17 : TATAAAAA--ATGTGATGTTCTTATAG---AAGACT------AT---ATT--AAAATCATAATAT--CAAAAAA-GCTCCAact
gi|1 : aaATAAAAA--ACGTGATGTTCTTGTAG---AAAAATGCAGTGTC---ATT--AAAACCATAATAT--TAAAAAA-TCTTCAAAC-TTT-TC--CAAAAATACTTCTTT
gi|14 : ATAAAAA--ATGTGG---CCCTGTAGTGCAAGACT------AC---CTT----AATCATAATATAAAAAAAAA-TCCTCAAAT-TTTTCC--
gi|12 : gaAAAA--ATGTGATGGTCTTGTAG---AAGACT------GC---ATT--AAAATCATAATAT--TAAAAAA-TCTCCAAAC-TTTTCCAAAACGAATATTTCtgaata
gi|9 : AAAA--GTGTGGTGTTCTTGTAG---AAGACC------AC---ATT--AAAATAATAATTT--AAAAAAA-TATCCAAACTTTTTCC--CCTAAATATTTCTTTc
gi|8 : tAAAA--GTGTGGTGTTCTTGTAG---AAGACC------AC---ATT--AAAATAATAATTT--AAAAAAA-TATCCAAACTTTTTCC--CCTAAATATTTCTT
gi|10 : atAAA--ATGCGACGTTCATGTAG---AAGACT------AC---ATT--AAAATCATAATAT--TTAAAAA-TCTACAAAC-TTCTCC--CCCAAATATTTCTTT
gi|16 : acTGTTCTTGTAG---AAGACT------AC---ATT--TAAATCATAATAT--TAAAAAA-TCTCCAAACATTTTCC--CATAATAATTTGTT
gi|15 : TGTTCATGTAG---AAGACTATG---TCGACATT--AAA-TCATAATAT--TTAAAAA-TATCCAAAC-TTTTCC--ACCAAATATTTCTT
gi|18 : aC---ATT--TAAATCATAATAT--TAAAAAAATCTCAAAAC-TTTTCC--TCCAAATATTTCT
Alignments
lowQualScore : 111111
lowQualScore : 77 444 666666 555555 33 33 2 7 33 2
lowQualScore : .. ... ...... ...... .. .. . . .. .
lowQualScore : 33 111 444444 888888 11 11 2 1 22 4
consensus : GTATAAAAA--ATGTGATGTTCTTGTAG---AAGACTA------CA------TT--AAAATCATAATAT--TAAAAAA-TCTCCAAAC-TTTTCC--C-CCAAATATTTCTTT
Reference ( family-1432 ) : GTATAAAAA--ATGTGATGTTCTTGTAG---AAGACTA------CA------TT--AAAATCATAATAT--TAAAAAA-TCTCCAAAC-TTTTCC--C-CCAAATATTTCTTT
gi|1 : ATAAAAA--ACGTGATGTTCTTGTAG---AAAAATG------CAGTGTCATT--AAAACCATAATAT--TAAAAAA-TCTTCAAAC-TTTT-C--C-AAAAATACTTCTTT
gi|10 : AAA--ATGCGACGTTCATGTAG---AAGACTA------CA------TT--AAAATCATAATAT--TTAAAAA-TCTACAAAC-TTCTCC--C-CCAAATATTTCTTT
gi|11 : acGTATAAAAA--CTGCGATGTTCTTGTAG---AAGACTT------CA------TT--AAAATTATAATAT--CAAAAAA-T-------C-TTTTCC--CACCTAATATTTCTTT
gi|12 : tAAAA--ATGTGATGGTCTTGTAG---AAGACTG------CA------TT--AAAATCATAATAT--TAAAAAA-TCTCCAAAC-TTTTCCAAA-ACGAATATTTC
gi|13 : TATAAAAA--ATGTGATGTTCTTGTAG---ATTATTA------CA------TT--AAAATCATAATAT--TAAAAAA-TCTTCAGAT-TTTTCG--T-CCAAATAc
gi|14 : ATAAAAA--ATGTGG---CCCTGTAGTGCAAGACTA------CC------TT----AATCATAATATAAAAAAAAA-TCCTCAAAT-TTTTCC--C-act
gi|15 : gaATGTTCATGTAG---AAGACTATGTCGACA------TT--AAA-TCATAATAT--TTAAAAA-TATCCAAAC-TTTTCC--A-CCAAATATTTCTTtgaata
gi|16 : TGTTCTTGTAG---AAGACTA------CA------TT--TAAATCATAATAT--TAAAAAA-TCTCCAAACATTTTCC--C-ATAATAATTTGTT
gi|17 : TATAAAAA--ATGTGATGTTCTTATAG---AAGACTA------TA------TT--AAAATCATAATAT--CAAAAAA-GCTCCA
gi|18 : aaA------CA------TT--TAAATCATAATAT--TAAAAAAATCTCAAAAC-TTTTCC--T-CCAAATATTTCT
gi|2 : GTATAAAAA--ATGTGATGTTCTTGTAG---AAGACTA------CA------TCAAAAAATCACAATAC--TAAAAAT-TATCAAAAC-TTTTCC--T-CCAAGTA-TTCTTT
gi|3 : tGTATAAAAATAATGTGATGTTCTTGTAG---AAGACTA------CAATCA--TT--AAAGTCATAAAAT--TAAAAAA-TCTCCAAA--TTTCCC--C-CCAAATATTT
gi|4 : GTATAAAAA--ATGTGGTGTTTTTGAAG---AAGACTT------CA------TT--AAAATCATAATAT--TAAAAAA-TCTCCAAAC-TTTCCC--C-CCAAATATTTCTTT
gi|5 : TATAAAAA--TTGTGATGTTCTTGTAG---GTGACTA------CA------TT--AAAATCATAATAT--TTAAAAA-TCTCTAAAC-TTTACC--C-CCAAATATTTCTTT
gi|6 : GTATAAAAATAATGTGATGTTCT---AG---AAGACTA------CAATCA--TT--AAAGTCATAAAAT--TAAAAAA-TCTCCAAA--TTTCCC--C-CCAAATATT
gi|7 : tTATAAAAA--GTGTGATGTTCTTGTAG---GAGACTA------CA------TT--AAAATTATAATAT--TTAAAAA-TCTCC-AAC-TTTTCC--C-ACAAATATTTCTT
gi|8 : AAAA--GTGTGGTGTTCTTGTAG---AAGACCA------CA------TT--AAAATAATAATTT--AAAAAAA-TATCCAAACTTTTTCC--C-CTAAATATTTCTT
gi|9 : atAAAA--GTGTGGTGTTCTTGTAG---AAGACCA------CA------TT--AAAATAATAATTT--AAAAAAA-TATCCAAACTTTTTCC--C-CTAAATATTTCTTT
Alignments
lowQualScore : 111111
lowQualScore : 77 444 666666 555555 33 33 2 7 33 2
lowQualScore : .. ... ...... ...... .. .. . . .. .
lowQualScore : 33 111 444444 888888 11 11 2 1 22 4
consensus : GTATAAAAA--ATGTGATGTTCTTGTAG---AAGACTA------CA------TT--AAAATCATAATAT--TAAAAAA-TCTCCAAAC-TTTTCC--C-CCAAATATTTCTTT
Reference ( family-1432 ) : GTATAAAAA--ATGTGATGTTCTTGTAG---AAGACTA------CA------TT--AAAATCATAATAT--TAAAAAA-TCTCCAAAC-TTTTCC--C-CCAAATATTTCTTT
gi|1 : ATAAAAA--ACGTGATGTTCTTGTAG---AAAAATG------CAGTGTCATT--AAAACCATAATAT--TAAAAAA-TCTTCAAAC-TTTT-C--C-AAAAATACTTCTTT
gi|10 : AAA--ATGCGACGTTCATGTAG---AAGACTA------CA------TT--AAAATCATAATAT--TTAAAAA-TCTACAAAC-TTCTCC--C-CCAAATATTTCTTT
gi|11 : acGTATAAAAA--CTGCGATGTTCTTGTAG---AAGACTT------CA------TT--AAAATTATAATAT--CAAAAAA-T-------C-TTTTCC--CACCTAATATTTCTTT
gi|12 : tAAAA--ATGTGATGGTCTTGTAG---AAGACTG------CA------TT--AAAATCATAATAT--TAAAAAA-TCTCCAAAC-TTTTCCAAA-ACGAATATTTC
gi|13 : TATAAAAA--ATGTGATGTTCTTGTAG---ATTATTA------CA------TT--AAAATCATAATAT--TAAAAAA-TCTTCAGAT-TTTTCG--T-CCAAATAc
gi|14 : ATAAAAA--ATGTGG---CCCTGTAGTGCAAGACTA------CC------TT----AATCATAATATAAAAAAAAA-TCCTCAAAT-TTTTCC--C-act
gi|15 : gaATGTTCATGTAG---AAGACTATGTCGACA------TT--AAA-TCATAATAT--TTAAAAA-TATCCAAAC-TTTTCC--A-CCAAATATTTCTTtgaata
gi|16 : TGTTCTTGTAG---AAGACTA------CA------TT--TAAATCATAATAT--TAAAAAA-TCTCCAAACATTTTCC--C-ATAATAATTTGTT
gi|17 : TATAAAAA--ATGTGATGTTCTTATAG---AAGACTA------TA------TT--AAAATCATAATAT--CAAAAAA-GCTCCA
gi|18 : aaA------CA------TT--TAAATCATAATAT--TAAAAAAATCTCAAAAC-TTTTCC--T-CCAAATATTTCT
gi|2 : GTATAAAAA--ATGTGATGTTCTTGTAG---AAGACTA------CA------TCAAAAAATCACAATAC--TAAAAAT-TATCAAAAC-TTTTCC--T-CCAAGTA-TTCTTT
gi|3 : tGTATAAAAATAATGTGATGTTCTTGTAG---AAGACTA------CAATCA--TT--AAAGTCATAAAAT--TAAAAAA-TCTCCAAA--TTTCCC--C-CCAAATATTT
gi|4 : GTATAAAAA--ATGTGGTGTTTTTGAAG---AAGACTT------CA------TT--AAAATCATAATAT--TAAAAAA-TCTCCAAAC-TTTCCC--C-CCAAATATTTCTTT
gi|5 : TATAAAAA--TTGTGATGTTCTTGTAG---GTGACTA------CA------TT--AAAATCATAATAT--TTAAAAA-TCTCTAAAC-TTTACC--C-CCAAATATTTCTTT
gi|6 : GTATAAAAATAATGTGATGTTCT---AG---AAGACTA------CAATCA--TT--AAAGTCATAAAAT--TAAAAAA-TCTCCAAA--TTTCCC--C-CCAAATATT
gi|7 : tTATAAAAA--GTGTGATGTTCTTGTAG---GAGACTA------CA------TT--AAAATTATAATAT--TTAAAAA-TCTCC-AAC-TTTTCC--C-ACAAATATTTCTT
gi|8 : AAAA--GTGTGGTGTTCTTGTAG---AAGACCA------CA------TT--AAAATAATAATTT--AAAAAAA-TATCCAAACTTTTTCC--C-CTAAATATTTCTT
gi|9 : atAAAA--GTGTGGTGTTCTTGTAG---AAGACCA------CA------TT--AAAATAATAATTT--AAAAAAA-TATCCAAACTTTTTCC--C-CTAAATATTTCTTT
blockSeqs : TA TGC TGTCGA ATCA AA AA A A AA A
blockSeqs : TA . . ATCA . . . T . .
blockSeqs : . . . . . . . T . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . .
blockSeqCons : ******
originalCons : GTATAAAAA--ATGTGATGTTCTTGTAG---AAGACTA------CA------TT--AAAATCATAATAT--TAAAAAA-TCTCCAAAC-TTTTCC--C-CCAAATATTTCTTT
finalCons : GTATAAAAA--ATGTGATGTTCTTGTAG---AAGACTA------CA------TT--AAAATCATAATAT--TAAAAAA-TCTCCAAAC-TTTTCC--C-CCAAATATTTCTTT
Alignments
lowQualScore : 111111
lowQualScore : 77 444 666666 555555 33 33 2 7 33 2
lowQualScore : .. ... ...... ...... .. .. . . .. .
lowQualScore : 33 111 444444 888888 11 11 2 1 22 4
consensus : GTATAAAAA--ATGTGATGTTCTTGTAG---AAGACTA------CA------TT--AAAATCATAATAT--TAAAAAA-TCTCCAAAC-TTTTCC--C-CCAAATATTTCTTT
Reference ( family-1432 ) : GTATAAAAA--ATGTGATGTTCTTGTAG---AAGACTA------CA------TT--AAAATCATAATAT--TAAAAAA-TCTCCAAAC-TTTTCC--C-CCAAATATTTCTTT
gi|1 : ATAAAAA--ACGTGATGTTCTTGTAG---AAAAATG------CAGTGTCATT--AAAACCATAATAT--TAAAAAA-TCTTCAAAC-TTTT-C--C-AAAAATACTTCTTT
gi|10 : AAA--ATGCGACGTTCATGTAG---AAGACTA------CA------TT--AAAATCATAATAT--TTAAAAA-TCTACAAAC-TTCTCC--C-CCAAATATTTCTTT
gi|11 : acGTATAAAAA--CTGCGATGTTCTTGTAG---AAGACTT------CA------TT--AAAATTATAATAT--CAAAAAA-T-------C-TTTTCC--CACCTAATATTTCTTT
gi|12 : tAAAA--ATGTGATGGTCTTGTAG---AAGACTG------CA------TT--AAAATCATAATAT--TAAAAAA-TCTCCAAAC-TTTTCCAAA-ACGAATATTTC
gi|13 : TATAAAAA--ATGTGATGTTCTTGTAG---ATTATTA------CA------TT--AAAATCATAATAT--TAAAAAA-TCTTCAGAT-TTTTCG--T-CCAAATAc
gi|14 : ATAAAAA--ATGTGG---CCCTGTAGTGCAAGACTA------CC------TT----AATCATAATATAAAAAAAAA-TCCTCAAAT-TTTTCC--C-act
gi|15 : gaATGTTCATGTAG---AAGACTATGTCGACA------TT--AAA-TCATAATAT--TTAAAAA-TATCCAAAC-TTTTCC--A-CCAAATATTTCTTtgaata
gi|16 : TGTTCTTGTAG---AAGACTA------CA------TT--TAAATCATAATAT--TAAAAAA-TCTCCAAACATTTTCC--C-ATAATAATTTGTT
gi|17 : TATAAAAA--ATGTGATGTTCTTATAG---AAGACTA------TA------TT--AAAATCATAATAT--CAAAAAA-GCTCCA
gi|18 : aaA------CA------TT--TAAATCATAATAT--TAAAAAAATCTCAAAAC-TTTTCC--T-CCAAATATTTCT
gi|2 : GTATAAAAA--ATGTGATGTTCTTGTAG---AAGACTA------CA------TCAAAAAATCACAATAC--TAAAAAT-TATCAAAAC-TTTTCC--T-CCAAGTA-TTCTTT
gi|3 : tGTATAAAAATAATGTGATGTTCTTGTAG---AAGACTA------CAATCA--TT--AAAGTCATAAAAT--TAAAAAA-TCTCCAAA--TTTCCC--C-CCAAATATTT
gi|4 : GTATAAAAA--ATGTGGTGTTTTTGAAG---AAGACTT------CA------TT--AAAATCATAATAT--TAAAAAA-TCTCCAAAC-TTTCCC--C-CCAAATATTTCTTT
gi|5 : TATAAAAA--TTGTGATGTTCTTGTAG---GTGACTA------CA------TT--AAAATCATAATAT--TTAAAAA-TCTCTAAAC-TTTACC--C-CCAAATATTTCTTT
gi|6 : GTATAAAAATAATGTGATGTTCT---AG---AAGACTA------CAATCA--TT--AAAGTCATAAAAT--TAAAAAA-TCTCCAAA--TTTCCC--C-CCAAATATT
gi|7 : tTATAAAAA--GTGTGATGTTCTTGTAG---GAGACTA------CA------TT--AAAATTATAATAT--TTAAAAA-TCTCC-AAC-TTTTCC--C-ACAAATATTTCTT
gi|8 : AAAA--GTGTGGTGTTCTTGTAG---AAGACCA------CA------TT--AAAATAATAATTT--AAAAAAA-TATCCAAACTTTTTCC--C-CTAAATATTTCTT
gi|9 : atAAAA--GTGTGGTGTTCTTGTAG---AAGACCA------CA------TT--AAAATAATAATTT--AAAAAAA-TATCCAAACTTTTTCC--C-CTAAATATTTCTTT